Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628830 | XP_024636922.1 | 83.133 | 498 | 22 | 4 | 1 | 436 | 1 | 498 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628830 | sp|F4KGN5|S40A2_ARATH | 50.497 | 503 | 173 | 7 | 3 | 430 | 2 | 503 | 9.54e-165 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0588650 | Msa0628830 | 0.808621 | 2.830086e-50 | -8.615850e-47 |
| Msa0588690 | Msa0628830 | 0.816977 | 4.186028e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628830 | MtrunA17_Chr4g0004881 | 83.133 | 498 | 22 | 4 | 1 | 436 | 1 | 498 | 0.0 | 795 |
| Msa0628830 | MtrunA17_Chr4g0004871 | 76.938 | 503 | 50 | 6 | 1 | 437 | 1 | 503 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628830 | AT5G03570.2 | 50.497 | 503 | 173 | 7 | 3 | 430 | 2 | 503 | 9.70e-166 | 476 |
| Msa0628830 | AT5G03570.1 | 50.497 | 503 | 173 | 7 | 3 | 430 | 2 | 503 | 9.70e-166 | 476 |
| Msa0628830 | AT2G38460.3 | 49.793 | 484 | 177 | 7 | 13 | 430 | 24 | 507 | 5.61e-159 | 459 |
| Msa0628830 | AT2G38460.8 | 49.793 | 484 | 177 | 7 | 13 | 430 | 24 | 507 | 5.61e-159 | 459 |
| Msa0628830 | AT2G38460.7 | 49.793 | 484 | 177 | 7 | 13 | 430 | 24 | 507 | 5.61e-159 | 459 |
| Msa0628830 | AT2G38460.4 | 49.793 | 484 | 177 | 7 | 13 | 430 | 24 | 507 | 5.61e-159 | 459 |
| Msa0628830 | AT2G38460.1 | 49.793 | 484 | 177 | 7 | 13 | 430 | 24 | 507 | 5.61e-159 | 459 |
| Msa0628830 | AT2G38460.6 | 49.793 | 484 | 177 | 7 | 13 | 430 | 24 | 507 | 5.61e-159 | 459 |
| Msa0628830 | AT5G03570.4 | 51.754 | 456 | 156 | 6 | 38 | 430 | 4 | 458 | 1.34e-154 | 446 |
| Msa0628830 | AT5G03570.3 | 44.802 | 529 | 190 | 10 | 3 | 430 | 2 | 529 | 2.83e-138 | 407 |
| Msa0628830 | AT2G38460.2 | 47.917 | 336 | 124 | 5 | 146 | 430 | 27 | 362 | 9.39e-102 | 308 |
| Msa0628830 | AT2G38460.5 | 47.917 | 336 | 124 | 5 | 146 | 430 | 27 | 362 | 9.39e-102 | 308 |
Find 109 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCACTTCAGTCCTTTA+TGG | 0.111551 | 4_3:-9539978 | Msa0628830:CDS |
| TCAGTCCTTTATGGATTTAT+TGG | 0.177636 | 4_3:-9539969 | Msa0628830:CDS |
| GTTGAGTTTATTATCATTTC+TGG | 0.179167 | 4_3:-9539723 | Msa0628830:CDS |
| GTTTATATATGATCAGTATT+TGG | 0.251156 | 4_3:-9542692 | Msa0628830:CDS |
| TACCTTGTTTAGCTGCAATA+TGG | 0.269742 | 4_3:-9540283 | Msa0628830:CDS |
| AAAGCCTTTCTGTTCTTCTT+TGG | 0.279511 | 4_3:+9541226 | None:intergenic |
| GGATTTATTGGCCTATGTTA+TGG | 0.283833 | 4_3:-9539957 | Msa0628830:CDS |
| ACCACAAGTAATAAGAAAAC+TGG | 0.292874 | 4_3:+9541982 | None:intergenic |
| TTCTCTCAAGCCCTTACTTT+AGG | 0.297365 | 4_3:+9539423 | None:intergenic |
| GGTATACCTGCATATGTTAT+TGG | 0.306448 | 4_3:-9540670 | Msa0628830:CDS |
| AACTTCTGAGAGTGATAGTT+TGG | 0.316090 | 4_3:-9541172 | Msa0628830:CDS |
| GATTTATTGGCCTATGTTAT+GGG | 0.325753 | 4_3:-9539956 | Msa0628830:CDS |
| GAACTGGACTTTGGTCTATC+TGG | 0.326980 | 4_3:-9540564 | Msa0628830:CDS |
| CATTGTCTCGGCTTGGACTC+TGG | 0.329902 | 4_3:-9540214 | Msa0628830:CDS |
| TATGTCACATTCAGGAGTTC+TGG | 0.331887 | 4_3:-9539748 | Msa0628830:intron |
| TTGGAATGGTGTTTCTGTTT+GGG | 0.333175 | 4_3:-9541307 | Msa0628830:CDS |
| ACAATCAAACGATCCGATTC+AGG | 0.333555 | 4_3:+9540013 | None:intergenic |
| TCTGCTTCCATTGCACTGTT+TGG | 0.337388 | 4_3:-9542627 | Msa0628830:CDS |
| GACAGGTGCAAGAAGCTTGC+AGG | 0.343176 | 4_3:+9541389 | None:intergenic |
| CTGCTGTATGCAGCAATATA+TGG | 0.350292 | 4_3:-9542660 | Msa0628830:CDS |
| TTTGGAATGGTGTTTCTGTT+TGG | 0.356948 | 4_3:-9541308 | Msa0628830:CDS |
| GGAGTACTTTCAACTCTTGC+TGG | 0.363166 | 4_3:-9541934 | Msa0628830:intron |
| AGAAGGAAAATCTTGTTCAT+TGG | 0.375283 | 4_3:+9543142 | None:intergenic |
| CATAGGAGGCCGAGTAAGTT+TGG | 0.377647 | 4_3:-9539453 | Msa0628830:three_prime_UTR |
| GAATCGGATCGTTTGATTGT+TGG | 0.385722 | 4_3:-9540010 | Msa0628830:CDS |
| GCTGCAATATGGATCTATAA+TGG | 0.389933 | 4_3:-9540272 | Msa0628830:CDS |
| TGCATGATCGTTGTAAGCTA+TGG | 0.390324 | 4_3:-9539606 | Msa0628830:exon |
| TTGATCACTTATTTATACTT+TGG | 0.394825 | 4_3:-9543116 | Msa0628830:CDS |
| GCACTGTTTGGTCCTTTGAT+TGG | 0.396123 | 4_3:-9542615 | Msa0628830:CDS |
| CTTCTTGCACCTGTCATAAC+CGG | 0.401032 | 4_3:-9541381 | Msa0628830:intron |
| TTTCTGTTTGGGTGGAGTAT+TGG | 0.409671 | 4_3:-9541296 | Msa0628830:CDS |
| GATAGTTTGGTTCATGATAC+TGG | 0.413590 | 4_3:-9541159 | Msa0628830:CDS |
| ATCAATATCTGTGGTGGCAT+TGG | 0.415810 | 4_3:-9541955 | Msa0628830:CDS |
| CTTGTTCATAGGATAGGATA+TGG | 0.425348 | 4_3:-9543198 | Msa0628830:exon |
| GCATGATCGTTGTAAGCTAT+GGG | 0.427896 | 4_3:-9539605 | Msa0628830:exon |
| CGAGGAATAAGCGCTGTAAT+CGG | 0.434606 | 4_3:-9540640 | Msa0628830:CDS |
| CATATATCAGCTATTAGAAC+TGG | 0.435345 | 4_3:-9540580 | Msa0628830:CDS |
| GCTGCATACAGCAGTGAGTC+TGG | 0.436769 | 4_3:+9542669 | None:intergenic |
| TGATGACAGCCACTTTAGAA+TGG | 0.438528 | 4_3:-9540696 | Msa0628830:CDS |
| ATTTAAGTCTCAACTTTCCT+TGG | 0.440646 | 4_3:+9539577 | None:intergenic |
| CTTAAATCTCAGCGAGGCCT+CGG | 0.442287 | 4_3:-9539561 | Msa0628830:three_prime_UTR |
| GGTGAAATCATGAGATTAGT+AGG | 0.444642 | 4_3:-9539479 | Msa0628830:three_prime_UTR |
| CTGCTATAACATTAGCACTT+TGG | 0.444855 | 4_3:-9541326 | Msa0628830:CDS |
| TGGTTCATGATACTGGTGAT+AGG | 0.447481 | 4_3:-9541152 | Msa0628830:CDS |
| TTGCAGCTAAACAAGGTAGA+AGG | 0.448541 | 4_3:+9540288 | None:intergenic |
| GATATATGATACTCTAGAAC+AGG | 0.456595 | 4_3:+9540595 | None:intergenic |
| TTGGCCGAGGTCCTAAAGTA+AGG | 0.463055 | 4_3:-9539434 | Msa0628830:three_prime_UTR |
| ACAAATCATAAAGAGAGGTT+TGG | 0.467475 | 4_3:-9539533 | Msa0628830:three_prime_UTR |
| ATAGGCCAATAAATCCATAA+AGG | 0.474038 | 4_3:+9539964 | None:intergenic |
| ACAGAACCTTGTTCCTGAAT+CGG | 0.475223 | 4_3:-9540026 | Msa0628830:intron |
| CAGCTATTAGAACTGGACTT+TGG | 0.486368 | 4_3:-9540573 | Msa0628830:CDS |
| CATCACAAAGTGATCTAGAA+AGG | 0.489388 | 4_3:-9541203 | Msa0628830:CDS |
| GATGACAGCCACTTTAGAAT+GGG | 0.490653 | 4_3:-9540695 | Msa0628830:CDS |
| TGGGGAGTGTCGCATTGTCT+CGG | 0.490686 | 4_3:-9540226 | Msa0628830:CDS |
| GGACCTCGGCCAAACTTACT+CGG | 0.493103 | 4_3:+9539444 | None:intergenic |
| TGGCTACTTTGATACAAAGC+TGG | 0.503719 | 4_3:+9541246 | None:intergenic |
| CAGTTCGGATGGTTGACCTT+CGG | 0.504389 | 4_3:+9541452 | None:intergenic |
| ATTCATCTTCGTCAGCAGTT+CGG | 0.505045 | 4_3:+9541437 | None:intergenic |
| ACTCCCCATCAAAATATATG+AGG | 0.506164 | 4_3:+9540241 | None:intergenic |
| ACTTTGGTCTATCTGGTCTC+AGG | 0.506958 | 4_3:-9540557 | Msa0628830:intron |
| GCTATTCCAATAACATATGC+AGG | 0.507380 | 4_3:+9540664 | None:intergenic |
| TCGGATCGTTTGATTGTTGG+AGG | 0.514780 | 4_3:-9540007 | Msa0628830:CDS |
| AGTGTCGCATTGTCTCGGCT+TGG | 0.524086 | 4_3:-9540221 | Msa0628830:CDS |
| TGATAAGTTGACTTACCAAA+AGG | 0.525992 | 4_3:-9542583 | Msa0628830:intron |
| TTGGTCCTTTGATTGGAACA+TGG | 0.526875 | 4_3:-9542608 | Msa0628830:CDS |
| TGGTCCTTTGATTGGAACAT+GGG | 0.527558 | 4_3:-9542607 | Msa0628830:CDS |
| GAATGGTGTTTCTGTTTGGG+TGG | 0.530211 | 4_3:-9541304 | Msa0628830:CDS |
| TGGTGATAGGTCAGAGTTGG+TGG | 0.535528 | 4_3:-9541139 | Msa0628830:CDS |
| ATCTTCGTCAGCAGTTCGGA+TGG | 0.536068 | 4_3:+9541441 | None:intergenic |
| ATGAGATTAGTAGGCTACAT+AGG | 0.545405 | 4_3:-9539470 | Msa0628830:three_prime_UTR |
| AAATAAGTGATCAAAGAAGA+AGG | 0.551934 | 4_3:+9543125 | None:intergenic |
| CACTTTGACAAACTATGGTG+TGG | 0.553784 | 4_3:-9539638 | Msa0628830:CDS |
| TCAACCCATGTTCCAATCAA+AGG | 0.557514 | 4_3:+9542603 | None:intergenic |
| ATAATGAAACCGGTTATGAC+AGG | 0.563001 | 4_3:+9541372 | None:intergenic |
| TTTGTTGGACTTCAGAGTGA+AGG | 0.563142 | 4_3:-9539500 | Msa0628830:three_prime_UTR |
| TATTATGATTCCCATAACAT+AGG | 0.572039 | 4_3:+9539946 | None:intergenic |
| TATACCTTCCCATTCTAAAG+TGG | 0.572385 | 4_3:+9540687 | None:intergenic |
| ATAACATTAGCACTTTGGAA+TGG | 0.574492 | 4_3:-9541321 | Msa0628830:CDS |
| GAGACTCTTGTTCATAGGAT+AGG | 0.575494 | 4_3:-9543204 | Msa0628830:five_prime_UTR |
| AATCATAATATCTGATCCAA+AGG | 0.575547 | 4_3:-9539933 | Msa0628830:intron |
| TGGCCGAGGTCCTAAAGTAA+GGG | 0.584285 | 4_3:-9539433 | Msa0628830:three_prime_UTR |
| CCACAAGTAATAAGAAAACT+GGG | 0.585329 | 4_3:+9541983 | None:intergenic |
| GCTTCCGCACGCAGAACACA+TGG | 0.585382 | 4_3:+9539669 | None:intergenic |
| AGGCCGAGTAAGTTTGGCCG+AGG | 0.586249 | 4_3:-9539447 | Msa0628830:three_prime_UTR |
| AAGCCCTTACTTTAGGACCT+CGG | 0.587957 | 4_3:+9539430 | None:intergenic |
| AGATGAATTCAGTTACGAGA+AGG | 0.591940 | 4_3:-9541422 | Msa0628830:CDS |
| ATGCAGTTATTTAGAAACGT+GGG | 0.592134 | 4_3:+9539389 | None:intergenic |
| CAAAGGACCAAACAGTGCAA+TGG | 0.594682 | 4_3:+9542620 | None:intergenic |
| GATAGGTCAGAGTTGGTGGA+TGG | 0.599483 | 4_3:-9541135 | Msa0628830:CDS |
| GTAAGCTATGGGGCGAACCA+AGG | 0.606777 | 4_3:-9539594 | Msa0628830:three_prime_UTR |
| AGAACACATGGATGCAGTAG+AGG | 0.614709 | 4_3:+9539681 | None:intergenic |
| ATCCATATTGCAGCTAAACA+AGG | 0.618571 | 4_3:+9540281 | None:intergenic |
| AGTGAACAAATCATAAAGAG+AGG | 0.621723 | 4_3:-9539538 | Msa0628830:three_prime_UTR |
| GTAGCCAAAGAAGAACAGAA+AGG | 0.625888 | 4_3:-9541230 | Msa0628830:CDS |
| AGGTTGTTAGTTATATCCGA+AGG | 0.628706 | 4_3:-9541468 | Msa0628830:intron |
| TACTGGTGATAGGTCAGAGT+TGG | 0.641284 | 4_3:-9541142 | Msa0628830:CDS |
| GCATCCATGTGTTCTGCGTG+CGG | 0.641952 | 4_3:-9539673 | Msa0628830:CDS |
| TTTATGATTTGTTCACTCCG+AGG | 0.642993 | 4_3:+9539544 | None:intergenic |
| AACGATCCGATTCAGGAACA+AGG | 0.643629 | 4_3:+9540020 | None:intergenic |
| TGCAGTTATTTAGAAACGTG+GGG | 0.644482 | 4_3:+9539390 | None:intergenic |
| AATGCAGTTATTTAGAAACG+TGG | 0.652262 | 4_3:+9539388 | None:intergenic |
| ACAGCCACTTTAGAATGGGA+AGG | 0.656412 | 4_3:-9540691 | Msa0628830:CDS |
| GTGATAATCAATATCTGTGG+TGG | 0.661957 | 4_3:-9541961 | Msa0628830:CDS |
| AGATTAGTAGGCTACATAGG+AGG | 0.662514 | 4_3:-9539467 | Msa0628830:three_prime_UTR |
| CATGATCGTTGTAAGCTATG+GGG | 0.688810 | 4_3:-9539604 | Msa0628830:exon |
| GACAAGTAAAGAAACTACAG+TGG | 0.708838 | 4_3:+9542032 | None:intergenic |
| TATGTTATTGGAATAGCACG+AGG | 0.719824 | 4_3:-9540658 | Msa0628830:CDS |
| GTGGTGATAATCAATATCTG+TGG | 0.725103 | 4_3:-9541964 | Msa0628830:CDS |
| TTGAGACTTAAATCTCAGCG+AGG | 0.732086 | 4_3:-9539567 | Msa0628830:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATCAATTTTCATTAA+AGG | + | chr4_3:9540728-9540747 | None:intergenic | 10.0% |
| !! | AAATTGAAATAAAAATAATC+AGG | + | chr4_3:9542545-9542564 | None:intergenic | 10.0% |
| !! | AATTAAATCAAAGAAAAAGA+GGG | + | chr4_3:9539608-9539627 | None:intergenic | 15.0% |
| !!! | ATATATACTTTAATTTCTTG+AGG | - | chr4_3:9539702-9539721 | Msa0628830:CDS | 15.0% |
| !! | GAGTTAACAATAATATATTT+GGG | + | chr4_3:9540046-9540065 | None:intergenic | 15.0% |
| !! | GTATATAAATTAATCTCTTT+CGG | + | chr4_3:9540997-9541016 | None:intergenic | 15.0% |
| !!! | AGAAATTTAAGACATTTTTT+CGG | + | chr4_3:9541815-9541834 | None:intergenic | 15.0% |
| !! | TAAATTTCTTTGATGTAAAT+TGG | - | chr4_3:9541826-9541845 | Msa0628830:intron | 15.0% |
| !! | TTGATCACTTATTTATACTT+TGG | - | chr4_3:9539481-9539500 | Msa0628830:three_prime_UTR | 20.0% |
| !! | CAATTAAATCAAAGAAAAAG+AGG | + | chr4_3:9539609-9539628 | None:intergenic | 20.0% |
| !! | GTAAAAAAGTTGAAATTATG+TGG | + | chr4_3:9539632-9539651 | None:intergenic | 20.0% |
| !! | GCACAAAATTATTATTTCAT+AGG | + | chr4_3:9539759-9539778 | None:intergenic | 20.0% |
| !!! | GAAATAATAATTTTGTGCAA+TGG | - | chr4_3:9539761-9539780 | Msa0628830:intron | 20.0% |
| !! | GTTTATATATGATCAGTATT+TGG | - | chr4_3:9539905-9539924 | Msa0628830:intron | 20.0% |
| !! | GGAGTTAACAATAATATATT+TGG | + | chr4_3:9540047-9540066 | None:intergenic | 20.0% |
| !!! | GTTTACTTTTTATCTTTCTA+CGG | + | chr4_3:9540235-9540254 | None:intergenic | 20.0% |
| !! | TAAGCATATGTTATGATTAA+CGG | + | chr4_3:9540325-9540344 | None:intergenic | 20.0% |
| !!! | AAAACCCTTCATTTTTTTAT+TGG | - | chr4_3:9540487-9540506 | Msa0628830:intron | 20.0% |
| !!! | TTTTTCATTTTTCATCATCA+TGG | - | chr4_3:9540843-9540862 | Msa0628830:intron | 20.0% |
| !!! | TAAATTTTGAGAGATTGTAA+AGG | + | chr4_3:9540872-9540891 | None:intergenic | 20.0% |
| !! | ATAAAGACAACAAAAAATCA+AGG | - | chr4_3:9541646-9541665 | Msa0628830:intron | 20.0% |
| !! | TAAAGACAACAAAAAATCAA+GGG | - | chr4_3:9541647-9541666 | Msa0628830:intron | 20.0% |
| !! | ATAATAGCATAAACACTTAT+AGG | - | chr4_3:9541699-9541718 | Msa0628830:intron | 20.0% |
| !!! | AGTAATTGAAATTTTATCAG+CGG | + | chr4_3:9541862-9541881 | None:intergenic | 20.0% |
| !! | TTATGTATGACTTCAAAAAA+TGG | - | chr4_3:9542108-9542127 | Msa0628830:intron | 20.0% |
| !!! | ATAACCAAGGTTTTAAATTA+CGG | + | chr4_3:9542196-9542215 | None:intergenic | 20.0% |
| !! | ATACATGTTTATGTATGATT+TGG | - | chr4_3:9542272-9542291 | Msa0628830:intron | 20.0% |
| !!! | TTTATCCTCATATATTTTGA+TGG | - | chr4_3:9542351-9542370 | Msa0628830:intron | 20.0% |
| !!! | TTATCCTCATATATTTTGAT+GGG | - | chr4_3:9542352-9542371 | Msa0628830:intron | 20.0% |
| !! | ATTTCACATTTGAAAGAATA+TGG | + | chr4_3:9542466-9542485 | None:intergenic | 20.0% |
| ! | AAATAAGTGATCAAAGAAGA+AGG | + | chr4_3:9539475-9539494 | None:intergenic | 25.0% |
| !!! | ATAGAGCATGTTTTGATAAA+AGG | + | chr4_3:9539680-9539699 | None:intergenic | 25.0% |
| !! | CTTTAATTTCTTGAGGAAAA+AGG | - | chr4_3:9539709-9539728 | Msa0628830:CDS | 25.0% |
| !!! | ATTTTTGTTTATGCAGAATG+TGG | - | chr4_3:9539869-9539888 | Msa0628830:intron | 25.0% |
| !!! | TTTTTGTTTATGCAGAATGT+GGG | - | chr4_3:9539870-9539889 | Msa0628830:intron | 25.0% |
| !! | AAATCTCGATTTGTTCAAAA+AGG | + | chr4_3:9540068-9540087 | None:intergenic | 25.0% |
| !! | AATCTGTCTTTTATTATTGC+TGG | - | chr4_3:9540540-9540559 | Msa0628830:intron | 25.0% |
| ! | GAGCAAAAAAGTAATTTGAT+TGG | + | chr4_3:9541041-9541060 | None:intergenic | 25.0% |
| !!! | TATAGTTTTAACTAGGCATT+TGG | + | chr4_3:9541071-9541090 | None:intergenic | 25.0% |
| ! | AAATGCCTAGTTAAAACTAT+AGG | - | chr4_3:9541070-9541089 | Msa0628830:intron | 25.0% |
| !!! | TTCTTCCTATAGTTTTAACT+AGG | + | chr4_3:9541078-9541097 | None:intergenic | 25.0% |
| !!! | AAGTATGTTTTATTCTGTAC+AGG | - | chr4_3:9541109-9541128 | Msa0628830:intron | 25.0% |
| ! | TACAAAGCTTATAATGAAAC+CGG | + | chr4_3:9541238-9541257 | None:intergenic | 25.0% |
| ! | TCAAAAAAATCAATCCAAAC+AGG | + | chr4_3:9541673-9541692 | None:intergenic | 25.0% |
| !!! | AGCACTTTAAAATCATATGT+GGG | + | chr4_3:9542072-9542091 | None:intergenic | 25.0% |
| !! | CAAAAAAACTTTTGATGTAG+CGG | + | chr4_3:9542153-9542172 | None:intergenic | 25.0% |
| !!! | TATCCTCATATATTTTGATG+GGG | - | chr4_3:9542353-9542372 | Msa0628830:intron | 25.0% |
| ! | TTATGAAGAAAAAGGAACAT+TGG | + | chr4_3:9542513-9542532 | None:intergenic | 25.0% |
| ! | CAAGATGATTATGAAGAAAA+AGG | + | chr4_3:9542521-9542540 | None:intergenic | 25.0% |
| !! | CTTTTTCTTCATAATCATCT+TGG | - | chr4_3:9542519-9542538 | Msa0628830:intron | 25.0% |
| ! | TATTATGATTCCCATAACAT+AGG | + | chr4_3:9542654-9542673 | None:intergenic | 25.0% |
| ! | AATCATAATATCTGATCCAA+AGG | - | chr4_3:9542664-9542683 | Msa0628830:CDS | 25.0% |
| !!! | TTAGTTTTAAAACTCACCTT+TGG | + | chr4_3:9542683-9542702 | None:intergenic | 25.0% |
| ! | TAGTATATACATATTTGGGT+TGG | + | chr4_3:9542718-9542737 | None:intergenic | 25.0% |
| ! | AACCCAAATATGTATATACT+AGG | - | chr4_3:9542717-9542736 | Msa0628830:intron | 25.0% |
| ! | ACCCAAATATGTATATACTA+GGG | - | chr4_3:9542718-9542737 | Msa0628830:intron | 25.0% |
| ! | ACCCTAGTATATACATATTT+GGG | + | chr4_3:9542722-9542741 | None:intergenic | 25.0% |
| ! | AACCCTAGTATATACATATT+TGG | + | chr4_3:9542723-9542742 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTATCATTTC+TGG | - | chr4_3:9542874-9542893 | Msa0628830:intron | 25.0% |
| !! | TTTTTCACTTTGACAAACTA+TGG | - | chr4_3:9542954-9542973 | Msa0628830:intron | 25.0% |
| ! | TGGATGAAAGAGAAATTTTG+AGG | - | chr4_3:9539419-9539438 | Msa0628830:three_prime_UTR | 30.0% |
| ! | GGATGAAAGAGAAATTTTGA+GGG | - | chr4_3:9539420-9539439 | Msa0628830:three_prime_UTR | 30.0% |
| AGAAGGAAAATCTTGTTCAT+TGG | + | chr4_3:9539458-9539477 | None:intergenic | 30.0% | |
| ! | ATTTTGTGCAATGGAACAAA+AGG | - | chr4_3:9539770-9539789 | Msa0628830:intron | 30.0% |
| ! | TTTTGTGCAATGGAACAAAA+GGG | - | chr4_3:9539771-9539790 | Msa0628830:intron | 30.0% |
| ! | TGATAAGTTGACTTACCAAA+AGG | - | chr4_3:9540014-9540033 | Msa0628830:CDS | 30.0% |
| !!! | CAAATCGAGATTTTAGTTTG+CGG | - | chr4_3:9540075-9540094 | Msa0628830:intron | 30.0% |
| ! | GGTACTTGACATCAAAATTT+TGG | + | chr4_3:9540177-9540196 | None:intergenic | 30.0% |
| CACATAAAACCCAAATTACA+CGG | + | chr4_3:9540198-9540217 | None:intergenic | 30.0% | |
| !! | TTGGGTTTTATGTGTGTTTT+TGG | - | chr4_3:9540204-9540223 | Msa0628830:CDS | 30.0% |
| CCTGCCAATAAAAAAATGAA+GGG | + | chr4_3:9540494-9540513 | None:intergenic | 30.0% | |
| ACCTGCCAATAAAAAAATGA+AGG | + | chr4_3:9540495-9540514 | None:intergenic | 30.0% | |
| CCACAAGTAATAAGAAAACT+GGG | + | chr4_3:9540617-9540636 | None:intergenic | 30.0% | |
| ACCACAAGTAATAAGAAAAC+TGG | + | chr4_3:9540618-9540637 | None:intergenic | 30.0% | |
| CTATCTTGATAGAAAGAGAA+TGG | - | chr4_3:9540688-9540707 | Msa0628830:CDS | 30.0% | |
| TTCACAGTATGACTTCTTAA+AGG | - | chr4_3:9540959-9540978 | Msa0628830:intron | 30.0% | |
| GTATGACTTCTTAAAGGAAA+TGG | - | chr4_3:9540965-9540984 | Msa0628830:intron | 30.0% | |
| TGTTATAGCAGATGCTTTAA+GGG | + | chr4_3:9541262-9541281 | None:intergenic | 30.0% | |
| ATGTTATAGCAGATGCTTTA+AGG | + | chr4_3:9541263-9541282 | None:intergenic | 30.0% | |
| ! | ATAACATTAGCACTTTGGAA+TGG | - | chr4_3:9541276-9541295 | Msa0628830:CDS | 30.0% |
| AAATCTCTTATGTTGATGCT+TGG | - | chr4_3:9541520-9541539 | Msa0628830:intron | 30.0% | |
| !!! | ACTTGCGAATGTTTTTAGTA+AGG | + | chr4_3:9541623-9541642 | None:intergenic | 30.0% |
| !! | GATATATGATACTCTAGAAC+AGG | + | chr4_3:9542005-9542024 | None:intergenic | 30.0% |
| CATATATCAGCTATTAGAAC+TGG | - | chr4_3:9542017-9542036 | Msa0628830:CDS | 30.0% | |
| !! | GAGCACTTTAAAATCATATG+TGG | + | chr4_3:9542073-9542092 | None:intergenic | 30.0% |
| TTCACTAGAATTCATAACCA+AGG | + | chr4_3:9542209-9542228 | None:intergenic | 30.0% | |
| TCAGTCCTTTATGGATTTAT+TGG | - | chr4_3:9542628-9542647 | Msa0628830:CDS | 30.0% | |
| ATAGGCCAATAAATCCATAA+AGG | + | chr4_3:9542636-9542655 | None:intergenic | 30.0% | |
| ! | GATTTATTGGCCTATGTTAT+GGG | - | chr4_3:9542641-9542660 | Msa0628830:CDS | 30.0% |
| ATTTAAGTCTCAACTTTCCT+TGG | + | chr4_3:9543023-9543042 | None:intergenic | 30.0% | |
| AGTGAACAAATCATAAAGAG+AGG | - | chr4_3:9543059-9543078 | Msa0628830:intron | 30.0% | |
| ACAAATCATAAAGAGAGGTT+TGG | - | chr4_3:9543064-9543083 | Msa0628830:intron | 30.0% | |
| CTTGTTCATAGGATAGGATA+TGG | - | chr4_3:9539399-9539418 | Msa0628830:three_prime_UTR | 35.0% | |
| GCATGATGAGAAATATTACC+TGG | + | chr4_3:9539530-9539549 | None:intergenic | 35.0% | |
| TTTGTGCAATGGAACAAAAG+GGG | - | chr4_3:9539772-9539791 | Msa0628830:intron | 35.0% | |
| ! | AGAATGTGGGAATTTTCTGT+TGG | - | chr4_3:9539883-9539902 | Msa0628830:intron | 35.0% |
| !! | ATATTTGGGATCACACCTTT+TGG | + | chr4_3:9540032-9540051 | None:intergenic | 35.0% |
| ! | ATGTCAAGTACCGTGTAATT+TGG | - | chr4_3:9540185-9540204 | Msa0628830:intron | 35.0% |
| ! | TGTCAAGTACCGTGTAATTT+GGG | - | chr4_3:9540186-9540205 | Msa0628830:intron | 35.0% |
| !!! | CCCTTCATTTTTTTATTGGC+AGG | - | chr4_3:9540491-9540510 | Msa0628830:intron | 35.0% |
| !!! | ATTGGCAGGTTTTGAAATTG+TGG | - | chr4_3:9540505-9540524 | Msa0628830:intron | 35.0% |
| GACAAGTAAAGAAACTACAG+TGG | + | chr4_3:9540568-9540587 | None:intergenic | 35.0% | |
| ! | CCCAGTTTTCTTATTACTTG+TGG | - | chr4_3:9540614-9540633 | Msa0628830:CDS | 35.0% |
| GTGGTGATAATCAATATCTG+TGG | - | chr4_3:9540633-9540652 | Msa0628830:CDS | 35.0% | |
| GTGATAATCAATATCTGTGG+TGG | - | chr4_3:9540636-9540655 | Msa0628830:CDS | 35.0% | |
| GAAGTCATACTGTGAAACAT+TGG | + | chr4_3:9540955-9540974 | None:intergenic | 35.0% | |
| AGGTTGTTAGTTATATCCGA+AGG | - | chr4_3:9541129-9541148 | Msa0628830:CDS | 35.0% | |
| AGATGAATTCAGTTACGAGA+AGG | - | chr4_3:9541175-9541194 | Msa0628830:CDS | 35.0% | |
| ATAATGAAACCGGTTATGAC+AGG | + | chr4_3:9541228-9541247 | None:intergenic | 35.0% | |
| CTGCTATAACATTAGCACTT+TGG | - | chr4_3:9541271-9541290 | Msa0628830:CDS | 35.0% | |
| ! | TTTGGAATGGTGTTTCTGTT+TGG | - | chr4_3:9541289-9541308 | Msa0628830:CDS | 35.0% |
| ! | TTGGAATGGTGTTTCTGTTT+GGG | - | chr4_3:9541290-9541309 | Msa0628830:CDS | 35.0% |
| !!! | GGAGTATTGGCTTTTTACAT+CGG | - | chr4_3:9541314-9541333 | Msa0628830:CDS | 35.0% |
| ! | CTTTTTACATCGGTGTATAG+TGG | - | chr4_3:9541324-9541343 | Msa0628830:CDS | 35.0% |
| AAAGCCTTTCTGTTCTTCTT+TGG | + | chr4_3:9541374-9541393 | None:intergenic | 35.0% | |
| CATCACAAAGTGATCTAGAA+AGG | - | chr4_3:9541394-9541413 | Msa0628830:CDS | 35.0% | |
| ! | AACTTCTGAGAGTGATAGTT+TGG | - | chr4_3:9541425-9541444 | Msa0628830:CDS | 35.0% |
| ! | GATAGTTTGGTTCATGATAC+TGG | - | chr4_3:9541438-9541457 | Msa0628830:CDS | 35.0% |
| !!! | TGCTATTTTTCACTGTACTC+AGG | - | chr4_3:9541592-9541611 | Msa0628830:intron | 35.0% |
| !!! | GACATTTTTTCGGTAGTGTT+TGG | + | chr4_3:9541805-9541824 | None:intergenic | 35.0% |
| TCAATTACTTGCTTCAGCTT+TGG | - | chr4_3:9541873-9541892 | Msa0628830:intron | 35.0% | |
| ! | TATACCTTCCCATTCTAAAG+TGG | + | chr4_3:9541913-9541932 | None:intergenic | 35.0% |
| GGTATACCTGCATATGTTAT+TGG | - | chr4_3:9541927-9541946 | Msa0628830:intron | 35.0% | |
| GCTATTCCAATAACATATGC+AGG | + | chr4_3:9541936-9541955 | None:intergenic | 35.0% | |
| TATGTTATTGGAATAGCACG+AGG | - | chr4_3:9541939-9541958 | Msa0628830:CDS | 35.0% | |
| ! | TATGTATGATTTGGATGCAG+TGG | - | chr4_3:9542281-9542300 | Msa0628830:intron | 35.0% |
| ! | TACCTTGTTTAGCTGCAATA+TGG | - | chr4_3:9542314-9542333 | Msa0628830:intron | 35.0% |
| ATCCATATTGCAGCTAAACA+AGG | + | chr4_3:9542319-9542338 | None:intergenic | 35.0% | |
| GCTGCAATATGGATCTATAA+TGG | - | chr4_3:9542325-9542344 | Msa0628830:intron | 35.0% | |
| ACTCCCCATCAAAATATATG+AGG | + | chr4_3:9542359-9542378 | None:intergenic | 35.0% | |
| ! | GGATTTATTGGCCTATGTTA+TGG | - | chr4_3:9542640-9542659 | Msa0628830:CDS | 35.0% |
| !! | TTTATGATTTGTTCACTCCG+AGG | + | chr4_3:9543056-9543075 | None:intergenic | 35.0% |
| ! | TTTGGCTGTGCAATTTTTGT+TGG | - | chr4_3:9543082-9543101 | Msa0628830:intron | 35.0% |
| GGTGAAATCATGAGATTAGT+AGG | - | chr4_3:9543118-9543137 | Msa0628830:CDS | 35.0% | |
| ATGAGATTAGTAGGCTACAT+AGG | - | chr4_3:9543127-9543146 | Msa0628830:CDS | 35.0% | |
| GAGACTCTTGTTCATAGGAT+AGG | - | chr4_3:9539393-9539412 | Msa0628830:three_prime_UTR | 40.0% | |
| !!! | TTGGCCACTTTTTAGCTAGA+TGG | - | chr4_3:9539500-9539519 | Msa0628830:three_prime_UTR | 40.0% |
| !!! | TGGCCACTTTTTAGCTAGAT+GGG | - | chr4_3:9539501-9539520 | Msa0628830:three_prime_UTR | 40.0% |
| AACCCCATCTAGCTAAAAAG+TGG | + | chr4_3:9539507-9539526 | None:intergenic | 40.0% | |
| TTGTGCAATGGAACAAAAGG+GGG | - | chr4_3:9539773-9539792 | Msa0628830:intron | 40.0% | |
| !!! | AAGGGGGTCACTTTTTGTTT+TGG | - | chr4_3:9539789-9539808 | Msa0628830:intron | 40.0% |
| CTGCTGTATGCAGCAATATA+TGG | - | chr4_3:9539937-9539956 | Msa0628830:CDS | 40.0% | |
| TTGGTCCTTTGATTGGAACA+TGG | - | chr4_3:9539989-9540008 | Msa0628830:CDS | 40.0% | |
| TGGTCCTTTGATTGGAACAT+GGG | - | chr4_3:9539990-9540009 | Msa0628830:CDS | 40.0% | |
| TCAACCCATGTTCCAATCAA+AGG | + | chr4_3:9539997-9540016 | None:intergenic | 40.0% | |
| CCAAATTCATAGCAGCAACA+AGG | + | chr4_3:9540455-9540474 | None:intergenic | 40.0% | |
| CCTTGTTGCTGCTATGAATT+TGG | - | chr4_3:9540452-9540471 | Msa0628830:intron | 40.0% | |
| !!! | GCAGGTTTTGAAATTGTGGT+TGG | - | chr4_3:9540509-9540528 | Msa0628830:intron | 40.0% |
| ATCAATATCTGTGGTGGCAT+TGG | - | chr4_3:9540642-9540661 | Msa0628830:CDS | 40.0% | |
| GTTTGTGTACCATAGTGAGT+CGG | + | chr4_3:9540905-9540924 | None:intergenic | 40.0% | |
| ATTCATCTTCGTCAGCAGTT+CGG | + | chr4_3:9541163-9541182 | None:intergenic | 40.0% | |
| TTTCTGTTTGGGTGGAGTAT+TGG | - | chr4_3:9541301-9541320 | Msa0628830:CDS | 40.0% | |
| ! | TGGCTACTTTGATACAAAGC+TGG | + | chr4_3:9541354-9541373 | None:intergenic | 40.0% |
| GTAGCCAAAGAAGAACAGAA+AGG | - | chr4_3:9541367-9541386 | Msa0628830:intron | 40.0% | |
| TGGTTCATGATACTGGTGAT+AGG | - | chr4_3:9541445-9541464 | Msa0628830:CDS | 40.0% | |
| !! | GCAGGAAAACAATTTTCGAG+TGG | - | chr4_3:9541490-9541509 | Msa0628830:intron | 40.0% |
| CAAAAAATCAAGGGCCTGTT+TGG | - | chr4_3:9541656-9541675 | Msa0628830:intron | 40.0% | |
| ! | ACATGTCCATAAGCTGCTTT+CGG | - | chr4_3:9541755-9541774 | Msa0628830:intron | 40.0% |
| ! | GTTTGGAACTTGAGAGCTTA+TGG | + | chr4_3:9541788-9541807 | None:intergenic | 40.0% |
| ! | TGATGACAGCCACTTTAGAA+TGG | - | chr4_3:9541901-9541920 | Msa0628830:intron | 40.0% |
| !! | GATGACAGCCACTTTAGAAT+GGG | - | chr4_3:9541902-9541921 | Msa0628830:intron | 40.0% |
| CAGCTATTAGAACTGGACTT+TGG | - | chr4_3:9542024-9542043 | Msa0628830:CDS | 40.0% | |
| TTGCAGCTAAACAAGGTAGA+AGG | + | chr4_3:9542312-9542331 | None:intergenic | 40.0% | |
| GTCTGTACTTCAACAAATGC+AGG | - | chr4_3:9542417-9542436 | Msa0628830:intron | 40.0% | |
| ACAGAACCTTGTTCCTGAAT+CGG | - | chr4_3:9542571-9542590 | Msa0628830:intron | 40.0% | |
| ACAATCAAACGATCCGATTC+AGG | + | chr4_3:9542587-9542606 | None:intergenic | 40.0% | |
| GAATCGGATCGTTTGATTGT+TGG | - | chr4_3:9542587-9542606 | Msa0628830:CDS | 40.0% | |
| GAGTTCACTTCAGTCCTTTA+TGG | - | chr4_3:9542619-9542638 | Msa0628830:CDS | 40.0% | |
| GAATGTGACATACAGAGAAC+AGG | + | chr4_3:9542841-9542860 | None:intergenic | 40.0% | |
| GTTCTCTGTATGTCACATTC+AGG | - | chr4_3:9542841-9542860 | Msa0628830:intron | 40.0% | |
| TATGTCACATTCAGGAGTTC+TGG | - | chr4_3:9542849-9542868 | Msa0628830:intron | 40.0% | |
| CACTTTGACAAACTATGGTG+TGG | - | chr4_3:9542959-9542978 | Msa0628830:intron | 40.0% | |
| TGCATGATCGTTGTAAGCTA+TGG | - | chr4_3:9542991-9543010 | Msa0628830:intron | 40.0% | |
| GCATGATCGTTGTAAGCTAT+GGG | - | chr4_3:9542992-9543011 | Msa0628830:intron | 40.0% | |
| CATGATCGTTGTAAGCTATG+GGG | - | chr4_3:9542993-9543012 | Msa0628830:intron | 40.0% | |
| TTGAGACTTAAATCTCAGCG+AGG | - | chr4_3:9543030-9543049 | Msa0628830:intron | 40.0% | |
| TTTGTTGGACTTCAGAGTGA+AGG | - | chr4_3:9543097-9543116 | Msa0628830:CDS | 40.0% | |
| AGATTAGTAGGCTACATAGG+AGG | - | chr4_3:9543130-9543149 | Msa0628830:CDS | 40.0% | |
| TTCTCTCAAGCCCTTACTTT+AGG | + | chr4_3:9543177-9543196 | None:intergenic | 40.0% | |
| !!! | GGCCACTTTTTAGCTAGATG+GGG | - | chr4_3:9539502-9539521 | Msa0628830:three_prime_UTR | 45.0% |
| !! | TTTTAGCTAGATGGGGTTCC+AGG | - | chr4_3:9539509-9539528 | Msa0628830:three_prime_UTR | 45.0% |
| TCTGCTTCCATTGCACTGTT+TGG | - | chr4_3:9539970-9539989 | Msa0628830:CDS | 45.0% | |
| CAAAGGACCAAACAGTGCAA+TGG | + | chr4_3:9539980-9539999 | None:intergenic | 45.0% | |
| GCACTGTTTGGTCCTTTGAT+TGG | - | chr4_3:9539982-9540001 | Msa0628830:CDS | 45.0% | |
| GTCAAATGTGATTCGCGTTG+TGG | - | chr4_3:9540139-9540158 | Msa0628830:intron | 45.0% | |
| ! | GGAGTACTTTCAACTCTTGC+TGG | - | chr4_3:9540663-9540682 | Msa0628830:CDS | 45.0% |
| CTTCTTGCACCTGTCATAAC+CGG | - | chr4_3:9541216-9541235 | Msa0628830:CDS | 45.0% | |
| ! | GAATGGTGTTTCTGTTTGGG+TGG | - | chr4_3:9541293-9541312 | Msa0628830:CDS | 45.0% |
| TACTGGTGATAGGTCAGAGT+TGG | - | chr4_3:9541455-9541474 | Msa0628830:CDS | 45.0% | |
| !! | AGTTGGTGGATGGAAAAAGC+AGG | - | chr4_3:9541472-9541491 | Msa0628830:intron | 45.0% |
| ! | GGACTACTTGAGAGAGCTTT+TGG | - | chr4_3:9541720-9541739 | Msa0628830:intron | 45.0% |
| GATAAGCCGAAAGCAGCTTA+TGG | + | chr4_3:9541764-9541783 | None:intergenic | 45.0% | |
| !! | ACAGCCACTTTAGAATGGGA+AGG | - | chr4_3:9541906-9541925 | Msa0628830:intron | 45.0% |
| ! | CGAGGAATAAGCGCTGTAAT+CGG | - | chr4_3:9541957-9541976 | Msa0628830:CDS | 45.0% |
| GAACTGGACTTTGGTCTATC+TGG | - | chr4_3:9542033-9542052 | Msa0628830:CDS | 45.0% | |
| ACTTTGGTCTATCTGGTCTC+AGG | - | chr4_3:9542040-9542059 | Msa0628830:CDS | 45.0% | |
| TTGTCTCTGCAACTGTATCG+CGG | - | chr4_3:9542170-9542189 | Msa0628830:intron | 45.0% | |
| ! | GCGGCCGTAATTTAAAACCT+TGG | - | chr4_3:9542189-9542208 | Msa0628830:intron | 45.0% |
| AACGATCCGATTCAGGAACA+AGG | + | chr4_3:9542580-9542599 | None:intergenic | 45.0% | |
| TCGGATCGTTTGATTGTTGG+AGG | - | chr4_3:9542590-9542609 | Msa0628830:CDS | 45.0% | |
| AGAACACATGGATGCAGTAG+AGG | + | chr4_3:9542919-9542938 | None:intergenic | 45.0% | |
| !! | AAGCCCTTACTTTAGGACCT+CGG | + | chr4_3:9543170-9543189 | None:intergenic | 45.0% |
| CAGTTCGGATGGTTGACCTT+CGG | + | chr4_3:9541148-9541167 | None:intergenic | 50.0% | |
| ATCTTCGTCAGCAGTTCGGA+TGG | + | chr4_3:9541159-9541178 | None:intergenic | 50.0% | |
| TGGTGATAGGTCAGAGTTGG+TGG | - | chr4_3:9541458-9541477 | Msa0628830:CDS | 50.0% | |
| !! | GATAGGTCAGAGTTGGTGGA+TGG | - | chr4_3:9541462-9541481 | Msa0628830:intron | 50.0% |
| CAGCAAGAAGTTGTGCTTCC+TGG | - | chr4_3:9541555-9541574 | Msa0628830:intron | 50.0% | |
| AGCGGCTTAGATCGCTATCA+TGG | + | chr4_3:9542135-9542154 | None:intergenic | 50.0% | |
| CTTAAATCTCAGCGAGGCCT+CGG | - | chr4_3:9543036-9543055 | Msa0628830:intron | 50.0% | |
| CATAGGAGGCCGAGTAAGTT+TGG | - | chr4_3:9543144-9543163 | Msa0628830:CDS | 50.0% | |
| TTGGCCGAGGTCCTAAAGTA+AGG | - | chr4_3:9543163-9543182 | Msa0628830:CDS | 50.0% | |
| TGGCCGAGGTCCTAAAGTAA+GGG | - | chr4_3:9543164-9543183 | Msa0628830:CDS | 50.0% | |
| GCTGCATACAGCAGTGAGTC+TGG | + | chr4_3:9539931-9539950 | None:intergenic | 55.0% | |
| GTGTACCATAGTGAGTCGGC+TGG | + | chr4_3:9540901-9540920 | None:intergenic | 55.0% | |
| GACAGGTGCAAGAAGCTTGC+AGG | + | chr4_3:9541211-9541230 | None:intergenic | 55.0% | |
| !! | TGTGCTTCCTGGACTAGCTC+TGG | - | chr4_3:9541566-9541585 | Msa0628830:intron | 55.0% |
| AGCAAAGCCAGAGCTAGTCC+AGG | + | chr4_3:9541576-9541595 | None:intergenic | 55.0% | |
| !! | TGGGGAGTGTCGCATTGTCT+CGG | - | chr4_3:9542371-9542390 | Msa0628830:intron | 55.0% |
| AGTGTCGCATTGTCTCGGCT+TGG | - | chr4_3:9542376-9542395 | Msa0628830:intron | 55.0% | |
| !! | CATTGTCTCGGCTTGGACTC+TGG | - | chr4_3:9542383-9542402 | Msa0628830:intron | 55.0% |
| GCATCCATGTGTTCTGCGTG+CGG | - | chr4_3:9542924-9542943 | Msa0628830:intron | 55.0% | |
| GTAAGCTATGGGGCGAACCA+AGG | - | chr4_3:9543003-9543022 | Msa0628830:intron | 55.0% | |
| GGACCTCGGCCAAACTTACT+CGG | + | chr4_3:9543156-9543175 | None:intergenic | 55.0% | |
| ! | CTCGTCCAGCCGACTCACTA+TGG | - | chr4_3:9540893-9540912 | Msa0628830:intron | 60.0% |
| GCTTCCGCACGCAGAACACA+TGG | + | chr4_3:9542931-9542950 | None:intergenic | 60.0% | |
| AGGCCGAGTAAGTTTGGCCG+AGG | - | chr4_3:9543150-9543169 | Msa0628830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 9539393 | 9543226 | 9539393 | ID=Msa0628830;Name=Msa0628830 |
| chr4_3 | mRNA | 9539393 | 9543226 | 9539393 | ID=Msa0628830-mRNA-1;Parent=Msa0628830;Name=Msa0628830-mRNA-1;_AED=0.34;_eAED=0.34;_QI=25|0.5|0.55|1|0.87|0.77|9|229|437 |
| chr4_3 | exon | 9539393 | 9539756 | 9539393 | ID=Msa0628830-mRNA-1:exon:2893;Parent=Msa0628830-mRNA-1 |
| chr4_3 | exon | 9539934 | 9540044 | 9539934 | ID=Msa0628830-mRNA-1:exon:2892;Parent=Msa0628830-mRNA-1 |
| chr4_3 | exon | 9540199 | 9540318 | 9540199 | ID=Msa0628830-mRNA-1:exon:2891;Parent=Msa0628830-mRNA-1 |
| chr4_3 | exon | 9540558 | 9540729 | 9540558 | ID=Msa0628830-mRNA-1:exon:2890;Parent=Msa0628830-mRNA-1 |
| chr4_3 | exon | 9541111 | 9541351 | 9541111 | ID=Msa0628830-mRNA-1:exon:2889;Parent=Msa0628830-mRNA-1 |
| chr4_3 | exon | 9541382 | 9541480 | 9541382 | ID=Msa0628830-mRNA-1:exon:2888;Parent=Msa0628830-mRNA-1 |
| chr4_3 | exon | 9541935 | 9542106 | 9541935 | ID=Msa0628830-mRNA-1:exon:2887;Parent=Msa0628830-mRNA-1 |
| chr4_3 | exon | 9542584 | 9542734 | 9542584 | ID=Msa0628830-mRNA-1:exon:2886;Parent=Msa0628830-mRNA-1 |
| chr4_3 | exon | 9543089 | 9543226 | 9543089 | ID=Msa0628830-mRNA-1:exon:2885;Parent=Msa0628830-mRNA-1 |
| chr4_3 | five_prime_UTR | 9543202 | 9543226 | 9543202 | ID=Msa0628830-mRNA-1:five_prime_utr;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9543089 | 9543201 | 9543089 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9542584 | 9542734 | 9542584 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9541935 | 9542106 | 9541935 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9541382 | 9541480 | 9541382 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9541111 | 9541351 | 9541111 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9540558 | 9540729 | 9540558 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9540199 | 9540318 | 9540199 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9539934 | 9540044 | 9539934 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | CDS | 9539622 | 9539756 | 9539622 | ID=Msa0628830-mRNA-1:cds;Parent=Msa0628830-mRNA-1 |
| chr4_3 | three_prime_UTR | 9539393 | 9539621 | 9539393 | ID=Msa0628830-mRNA-1:three_prime_utr;Parent=Msa0628830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
