Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588690 | XP_024636922.1 | 94.578 | 498 | 21 | 1 | 1 | 492 | 1 | 498 | 0.0 | 937 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588690 | sp|F4KGN5|S40A2_ARATH | 57.769 | 502 | 194 | 2 | 3 | 486 | 2 | 503 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0164560 | Msa0588690 | 0.800064 | 1.717628e-48 | -8.615850e-47 |
| Msa0405200 | Msa0588690 | 0.813402 | 2.606291e-51 | -8.615850e-47 |
| Msa0415010 | Msa0588690 | 0.824740 | 6.851777e-54 | -8.615850e-47 |
| Msa0433090 | Msa0588690 | 0.802988 | 4.320553e-49 | -8.615850e-47 |
| Msa0449500 | Msa0588690 | 0.815827 | 7.573727e-52 | -8.615850e-47 |
| Msa0459930 | Msa0588690 | 0.831108 | 2.012626e-55 | -8.615850e-47 |
| Msa0303900 | Msa0588690 | 0.802671 | 5.022135e-49 | -8.615850e-47 |
| Msa0333770 | Msa0588690 | 0.801902 | 7.231848e-49 | -8.615850e-47 |
| Msa0345050 | Msa0588690 | 0.813817 | 2.112494e-51 | -8.615850e-47 |
| Msa0497680 | Msa0588690 | 0.822647 | 2.117623e-53 | -8.615850e-47 |
| Msa0524710 | Msa0588690 | 0.805656 | 1.201456e-49 | -8.615850e-47 |
| Msa0531050 | Msa0588690 | 0.802321 | 5.929448e-49 | -8.615850e-47 |
| Msa0588650 | Msa0588690 | 0.964649 | 1.359481e-123 | -8.615850e-47 |
| Msa0588690 | Msa0603310 | 0.819149 | 1.351632e-52 | -8.615850e-47 |
| Msa0588690 | Msa0628830 | 0.816977 | 4.186028e-52 | -8.615850e-47 |
| Msa0588690 | Msa0644340 | 0.808967 | 2.387579e-50 | -8.615850e-47 |
| Msa0588690 | Msa0682160 | 0.800987 | 1.113687e-48 | -8.615850e-47 |
| Msa0588690 | Msa0699800 | 0.812063 | 5.119672e-51 | -8.615850e-47 |
| Msa0588690 | Msa0829990 | 0.811108 | 8.255608e-51 | -8.615850e-47 |
| Msa0588690 | Msa0873910 | 0.809505 | 1.830181e-50 | -8.615850e-47 |
| Msa0588690 | Msa0906660 | 0.811943 | 5.436703e-51 | -8.615850e-47 |
| Msa0588690 | Msa1007900 | 0.816149 | 6.416115e-52 | -8.615850e-47 |
| Msa0588690 | Msa1062060 | 0.803926 | 2.761372e-49 | -8.615850e-47 |
| Msa0588690 | Msa1085820 | 0.804876 | 1.750064e-49 | -8.615850e-47 |
| Msa0588690 | Msa1107220 | 0.817665 | 2.931279e-52 | -8.615850e-47 |
| Msa0588690 | Msa1121720 | -0.807986 | 3.866250e-50 | -8.615850e-47 |
| Msa0588690 | Msa1136690 | 0.805192 | 1.503417e-49 | -8.615850e-47 |
| Msa0588690 | Msa1150760 | 0.803770 | 2.974250e-49 | -8.615850e-47 |
| Msa0588690 | Msa1174280 | 0.835433 | 1.682800e-56 | -8.615850e-47 |
| Msa0588690 | Msa1202110 | 0.807216 | 5.632673e-50 | -8.615850e-47 |
| Msa0588690 | Msa1254870 | 0.808649 | 2.792598e-50 | -8.615850e-47 |
| Msa0588690 | Msa1328430 | 0.807645 | 4.568071e-50 | -8.615850e-47 |
| Msa0588690 | Msa1356100 | -0.808359 | 3.219984e-50 | -8.615850e-47 |
| Msa0588690 | Msa1364690 | 0.810953 | 8.920694e-51 | -8.615850e-47 |
| Msa0588690 | Msa1437590 | 0.807303 | 5.398849e-50 | -8.615850e-47 |
| Msa0588690 | Msa1459920 | 0.807307 | 5.387251e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588690 | MtrunA17_Chr4g0004881 | 94.578 | 498 | 21 | 1 | 1 | 492 | 1 | 498 | 0.0 | 937 |
| Msa0588690 | MtrunA17_Chr4g0004871 | 88.072 | 503 | 50 | 3 | 1 | 493 | 1 | 503 | 0.0 | 872 |
| Msa0588690 | MtrunA17_Chr1g0192831 | 24.540 | 489 | 296 | 15 | 8 | 470 | 126 | 567 | 9.60e-19 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588690 | AT5G03570.2 | 57.769 | 502 | 194 | 2 | 3 | 486 | 2 | 503 | 0.0 | 584 |
| Msa0588690 | AT5G03570.1 | 57.769 | 502 | 194 | 2 | 3 | 486 | 2 | 503 | 0.0 | 584 |
| Msa0588690 | AT2G38460.3 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588690 | AT2G38460.8 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588690 | AT2G38460.7 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588690 | AT2G38460.4 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588690 | AT2G38460.1 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588690 | AT2G38460.6 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588690 | AT5G03570.3 | 54.924 | 528 | 194 | 3 | 3 | 486 | 2 | 529 | 0.0 | 570 |
| Msa0588690 | AT5G03570.4 | 59.780 | 455 | 177 | 1 | 38 | 486 | 4 | 458 | 0.0 | 554 |
| Msa0588690 | AT2G38460.2 | 58.160 | 337 | 135 | 1 | 156 | 486 | 26 | 362 | 4.97e-136 | 398 |
| Msa0588690 | AT2G38460.5 | 58.160 | 337 | 135 | 1 | 156 | 486 | 26 | 362 | 4.97e-136 | 398 |
| Msa0588690 | AT5G26820.1 | 26.446 | 484 | 294 | 16 | 26 | 486 | 152 | 596 | 1.24e-22 | 101 |
Find 115 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTGAATTGTTCCTTTC+TGG | 0.073729 | 4_2:-11135116 | None:intergenic |
| GAGTTCACTTCAGTCCTTTA+TGG | 0.111551 | 4_2:+11136328 | Msa0588690:CDS |
| AAGTTATAGCAGATGCTTTA+AGG | 0.153997 | 4_2:-11134968 | None:intergenic |
| TAAATAACTGCATTGGATTA+TGG | 0.172820 | 4_2:+11136927 | Msa0588690:three_prime_UTR |
| TCAGTCCTTTATGGATTTAT+TGG | 0.177636 | 4_2:+11136337 | Msa0588690:CDS |
| GTTGAGTTTATTATCATTTC+TGG | 0.179167 | 4_2:+11136583 | Msa0588690:CDS |
| TTGGCTTCACAATATTTAAT+AGG | 0.186744 | 4_2:-11137093 | None:intergenic |
| GAACTGGACTTTGGTCTATT+TGG | 0.205127 | 4_2:+11135740 | Msa0588690:CDS |
| CAGCAAGAAGTTGTGCTTCC+TGG | 0.222666 | 4_2:+11135263 | Msa0588690:CDS |
| GTTTATATATGATCAGTATT+TGG | 0.251156 | 4_2:+11133580 | Msa0588690:CDS |
| TACCTTGTTTAGCTGCAATA+TGG | 0.269742 | 4_2:+11136023 | Msa0588690:CDS |
| GGTATACCTGCATATGTAAT+TGG | 0.278402 | 4_2:+11135634 | Msa0588690:CDS |
| GGATTTATTGGCCTATGTTA+TGG | 0.283833 | 4_2:+11136349 | Msa0588690:CDS |
| ACCACAAGTAATAAGAAAAC+TGG | 0.292874 | 4_2:-11134285 | None:intergenic |
| TGGCTTCACAATATTTAATA+GGG | 0.319413 | 4_2:-11137092 | None:intergenic |
| GATTTATTGGCCTATGTTAT+GGG | 0.325753 | 4_2:+11136350 | Msa0588690:CDS |
| CATTGTCTCGGCTTGGACTC+TGG | 0.329902 | 4_2:+11136092 | Msa0588690:CDS |
| TATGTCACATTCAGGAGTTC+TGG | 0.331887 | 4_2:+11136558 | Msa0588690:intron |
| TTGGAATGGTGTTTCTGTTT+GGG | 0.333175 | 4_2:+11134998 | Msa0588690:CDS |
| ACAATCAAACGATCCGATTC+AGG | 0.333555 | 4_2:-11136293 | None:intergenic |
| TCTGCTTCCATTGCACTGTT+TGG | 0.337388 | 4_2:+11133645 | Msa0588690:CDS |
| GACAGGTGCAAGAAGCTTGC+AGG | 0.343176 | 4_2:-11134916 | None:intergenic |
| CTGCTGTATGCAGCAATATA+TGG | 0.350292 | 4_2:+11133612 | Msa0588690:CDS |
| AGTTATAGCAGATGCTTTAA+GGG | 0.354740 | 4_2:-11134967 | None:intergenic |
| TTTGGAATGGTGTTTCTGTT+TGG | 0.356948 | 4_2:+11134997 | Msa0588690:CDS |
| GGAGTACTTTCAACTCTTGC+TGG | 0.363166 | 4_2:+11134333 | Msa0588690:CDS |
| AGAAGGAAAATCTTGTTCAT+TGG | 0.375283 | 4_2:-11133120 | None:intergenic |
| GAATCGGATCGTTTGATTGT+TGG | 0.385722 | 4_2:+11136296 | Msa0588690:CDS |
| GCTGCAATATGGATCTATAA+TGG | 0.389933 | 4_2:+11136034 | Msa0588690:CDS |
| TGCATGATCGTTGTAAGCTA+TGG | 0.390324 | 4_2:+11136700 | Msa0588690:exon |
| TTGATCACTTATTTATACTT+TGG | 0.394825 | 4_2:+11133146 | Msa0588690:CDS |
| GCACTGTTTGGTCCTTTGAT+TGG | 0.396123 | 4_2:+11133657 | Msa0588690:CDS |
| CTGCTATAACTTTAGCACTT+TGG | 0.399038 | 4_2:+11134979 | Msa0588690:CDS |
| CTTCTTGCACCTGTCATAAC+CGG | 0.401032 | 4_2:+11134924 | Msa0588690:CDS |
| GATAGTTTGCTTCATGATAC+TGG | 0.408681 | 4_2:+11135146 | Msa0588690:CDS |
| TTTCTGTTTGGGTGGAGTAT+TGG | 0.409671 | 4_2:+11135009 | Msa0588690:CDS |
| ACTTTGGTCTATTTGGTCTC+AGG | 0.413716 | 4_2:+11135747 | Msa0588690:CDS |
| ATCAATATCTGTGGTGGCAT+TGG | 0.415810 | 4_2:+11134312 | Msa0588690:CDS |
| CGAGGAATAAGCGCTGTAAT+CGG | 0.427494 | 4_2:+11135664 | Msa0588690:CDS |
| GCATGATCGTTGTAAGCTAT+GGG | 0.427896 | 4_2:+11136701 | Msa0588690:exon |
| CATATATCAGCTATTAGAAC+TGG | 0.435345 | 4_2:+11135724 | Msa0588690:CDS |
| GCTGCATACAGCAGTGAGTC+TGG | 0.436769 | 4_2:-11133603 | None:intergenic |
| AAGGTTTCTCCACTTACTCT+AGG | 0.438174 | 4_2:+11137064 | Msa0588690:three_prime_UTR |
| TGATGACAGCCACTTTAGAA+TGG | 0.438528 | 4_2:+11135608 | Msa0588690:CDS |
| ATTTAAGTCTCAACTTTCCT+TGG | 0.440646 | 4_2:-11136729 | None:intergenic |
| CTTAAATCTCAGCGAGGCCT+CGG | 0.442287 | 4_2:+11136745 | Msa0588690:three_prime_UTR |
| GGTGAAATCATGAGATTAGT+AGG | 0.444642 | 4_2:+11136827 | Msa0588690:three_prime_UTR |
| TACAAAGCTTATAATGAAAC+CGG | 0.445020 | 4_2:-11134943 | None:intergenic |
| TTGCAGCTAAACAAGGTAGA+AGG | 0.448541 | 4_2:-11136018 | None:intergenic |
| TTTGTTCGAAAATAGACATC+TGG | 0.449289 | 4_2:+11136981 | Msa0588690:three_prime_UTR |
| TGTGCTTCCTGGACTAGCTC+TGG | 0.453209 | 4_2:+11135274 | Msa0588690:CDS |
| ACAAATCATAAAGAGAGGTT+TGG | 0.467475 | 4_2:+11136773 | Msa0588690:three_prime_UTR |
| ATAGGCCAATAAATCCATAA+AGG | 0.474038 | 4_2:-11136342 | None:intergenic |
| AAATCTCTTATGTTGATGCT+TGG | 0.474778 | 4_2:+11135228 | Msa0588690:CDS |
| ACAGAACCTTGTTCCTGAAT+CGG | 0.475223 | 4_2:+11136280 | Msa0588690:intron |
| CAGCTATTAGAACTGGACTT+TGG | 0.486368 | 4_2:+11135731 | Msa0588690:CDS |
| TGCTTCATGATACTGGTGAT+AGG | 0.489279 | 4_2:+11135153 | Msa0588690:CDS |
| GATGACAGCCACTTTAGAAT+GGG | 0.490653 | 4_2:+11135609 | Msa0588690:CDS |
| TGGGGAGTGTCGCATTGTCT+CGG | 0.490686 | 4_2:+11136080 | Msa0588690:CDS |
| GCTATTCCAATTACATATGC+AGG | 0.500880 | 4_2:-11135640 | None:intergenic |
| CAGTTCGGATGGTTGACCTT+CGG | 0.504389 | 4_2:-11134853 | None:intergenic |
| ATTCATCTTCGTCAGCAGTT+CGG | 0.505045 | 4_2:-11134868 | None:intergenic |
| CAAAGATGAGTAGACAAGTA+AGG | 0.506015 | 4_2:-11134247 | None:intergenic |
| ACTCCCCATCAAAATATATG+AGG | 0.506164 | 4_2:-11136065 | None:intergenic |
| ACGTTTCTAAATAACTGCAT+TGG | 0.510356 | 4_2:+11136920 | Msa0588690:intron |
| TCGGATCGTTTGATTGTTGG+AGG | 0.514780 | 4_2:+11136299 | Msa0588690:CDS |
| TACTGGTGATAGGTCAGAAT+TGG | 0.515128 | 4_2:+11135163 | Msa0588690:CDS |
| AGTGTCGCATTGTCTCGGCT+TGG | 0.524086 | 4_2:+11136085 | Msa0588690:CDS |
| TGATAAGTTGACTTACCAAA+AGG | 0.525992 | 4_2:+11133689 | Msa0588690:CDS |
| GCTTCCGCACGCGGAACACA+TGG | 0.526869 | 4_2:-11136637 | None:intergenic |
| TTGGTCCTTTGATTGGAACA+TGG | 0.526875 | 4_2:+11133664 | Msa0588690:CDS |
| TGGTCCTTTGATTGGAACAT+GGG | 0.527558 | 4_2:+11133665 | Msa0588690:CDS |
| AGGGTCGACCCTAGAGTAAG+TGG | 0.529920 | 4_2:-11137073 | None:intergenic |
| GAATGGTGTTTCTGTTTGGG+TGG | 0.530211 | 4_2:+11135001 | Msa0588690:CDS |
| ATAACTTTAGCACTTTGGAA+TGG | 0.530900 | 4_2:+11134984 | Msa0588690:CDS |
| GATATATGATACTCTAGAGC+AGG | 0.531831 | 4_2:-11135709 | None:intergenic |
| ATCTTCGTCAGCAGTTCGGA+TGG | 0.536068 | 4_2:-11134864 | None:intergenic |
| CTATCTTGATAGAAAGAGAA+TGG | 0.536593 | 4_2:+11134358 | Msa0588690:CDS |
| TGGCTACTTCGACACAAAGC+AGG | 0.542689 | 4_2:-11135059 | None:intergenic |
| ATGAGATTAGTAGGCTACAT+AGG | 0.545405 | 4_2:+11136836 | Msa0588690:three_prime_UTR |
| TGGTGATAGGTCAGAATTGG+TGG | 0.551356 | 4_2:+11135166 | Msa0588690:CDS |
| AAATAAGTGATCAAAGAAGA+AGG | 0.551934 | 4_2:-11133137 | None:intergenic |
| CACTTTGACAAACTATGGTG+TGG | 0.553784 | 4_2:+11136668 | Msa0588690:CDS |
| AGCAAAGCCAGAGCTAGTCC+AGG | 0.555663 | 4_2:-11135281 | None:intergenic |
| TCAACCCATGTTCCAATCAA+AGG | 0.557514 | 4_2:-11133669 | None:intergenic |
| AGGTTTCTCCACTTACTCTA+GGG | 0.559198 | 4_2:+11137065 | Msa0588690:three_prime_UTR |
| ATAATGAAACCGGTTATGAC+AGG | 0.563001 | 4_2:-11134933 | None:intergenic |
| TTTGTTGGACTTCAGAGTGA+AGG | 0.563142 | 4_2:+11136806 | Msa0588690:three_prime_UTR |
| TATTATGATTCCCATAACAT+AGG | 0.572039 | 4_2:-11136360 | None:intergenic |
| TATACCTTCCCATTCTAAAG+TGG | 0.572385 | 4_2:-11135617 | None:intergenic |
| AATCATAATATCTGATCCAA+AGG | 0.575547 | 4_2:+11136373 | Msa0588690:CDS |
| CCACAAGTAATAAGAAAACT+GGG | 0.585329 | 4_2:-11134284 | None:intergenic |
| GTAGCCAAAGGAGAAAAGAA+AGG | 0.585350 | 4_2:+11135075 | Msa0588690:CDS |
| CAACACAAAGTGATCCAGAA+AGG | 0.589772 | 4_2:+11135102 | Msa0588690:CDS |
| AGATGAATTCAGTTACGAGA+AGG | 0.591940 | 4_2:+11134883 | Msa0588690:CDS |
| CAAAGGACCAAACAGTGCAA+TGG | 0.594682 | 4_2:-11133652 | None:intergenic |
| GCATCCATGTGTTCCGCGTG+CGG | 0.599991 | 4_2:+11136633 | Msa0588690:CDS |
| GTAAGCTATGGGGCGAACCA+AGG | 0.606777 | 4_2:+11136712 | Msa0588690:three_prime_UTR |
| ATCCATATTGCAGCTAAACA+AGG | 0.618571 | 4_2:-11136025 | None:intergenic |
| AGTGAACAAATCATAAAGAG+AGG | 0.621723 | 4_2:+11136768 | Msa0588690:three_prime_UTR |
| GGAACACATGGATGCAGTAG+AGG | 0.622725 | 4_2:-11136625 | None:intergenic |
| AGGTTGTTAGTTATATCCGA+AGG | 0.628706 | 4_2:+11134837 | Msa0588690:intron |
| TTTATGATTTGTTCACTCCG+AGG | 0.642993 | 4_2:-11136762 | None:intergenic |
| AACGATCCGATTCAGGAACA+AGG | 0.643629 | 4_2:-11136286 | None:intergenic |
| GATAGGTCAGAATTGGTGGA+TGG | 0.649913 | 4_2:+11135170 | Msa0588690:CDS |
| CTTTGTGTCGAAGTAGCCAA+AGG | 0.650218 | 4_2:+11135063 | Msa0588690:CDS |
| TTCGAAAATAGACATCTGGA+CGG | 0.651364 | 4_2:+11136985 | Msa0588690:three_prime_UTR |
| ACAGCCACTTTAGAATGGGA+AGG | 0.656412 | 4_2:+11135613 | Msa0588690:CDS |
| GTGATAATCAATATCTGTGG+TGG | 0.661957 | 4_2:+11134306 | Msa0588690:CDS |
| AGATTAGTAGGCTACATAGG+AGG | 0.662514 | 4_2:+11136839 | Msa0588690:three_prime_UTR |
| TATGTAATTGGAATAGCGCG+AGG | 0.670079 | 4_2:+11135646 | Msa0588690:CDS |
| CATGATCGTTGTAAGCTATG+GGG | 0.688810 | 4_2:+11136702 | Msa0588690:exon |
| GACAAGTAAGGTAACTACAG+TGG | 0.693740 | 4_2:-11134235 | None:intergenic |
| GTGGTGATAATCAATATCTG+TGG | 0.725103 | 4_2:+11134303 | Msa0588690:CDS |
| TTGAGACTTAAATCTCAGCG+AGG | 0.732086 | 4_2:+11136739 | Msa0588690:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATCAATTTTCATTAA+AGG | - | chr4_2:11134398-11134417 | None:intergenic | 10.0% |
| !! | AAATTGAAATAAAAATAATC+AGG | - | chr4_2:11136254-11136273 | None:intergenic | 10.0% |
| !! | AATTAAATCAAAGAAAAAGA+GGG | - | chr4_2:11133273-11133292 | None:intergenic | 15.0% |
| !!! | ATATATACTTTAATTTCTTG+AGG | + | chr4_2:11133377-11133396 | Msa0588690:intron | 15.0% |
| !!! | AAGAAATTTAAGACATTTTT+CGG | - | chr4_2:11135523-11135542 | None:intergenic | 15.0% |
| !! | TAAATTTCTTTGATGTAAAT+TGG | + | chr4_2:11135533-11135552 | Msa0588690:intron | 15.0% |
| !! | TTGATCACTTATTTATACTT+TGG | + | chr4_2:11133146-11133165 | Msa0588690:CDS | 20.0% |
| !! | CAATTAAATCAAAGAAAAAG+AGG | - | chr4_2:11133274-11133293 | None:intergenic | 20.0% |
| !! | GTAAAAAAGTTGAAATTATG+TGG | - | chr4_2:11133297-11133316 | None:intergenic | 20.0% |
| !! | GCACAAAATTATTATTTCAT+AGG | - | chr4_2:11133434-11133453 | None:intergenic | 20.0% |
| !!! | GAAATAATAATTTTGTGCAA+TGG | + | chr4_2:11133436-11133455 | Msa0588690:intron | 20.0% |
| !! | GTTTATATATGATCAGTATT+TGG | + | chr4_2:11133580-11133599 | Msa0588690:CDS | 20.0% |
| !! | GAAGAGTTAACAATATATTT+GGG | - | chr4_2:11133721-11133740 | None:intergenic | 20.0% |
| !! | AGAAGAGTTAACAATATATT+TGG | - | chr4_2:11133722-11133741 | None:intergenic | 20.0% |
| !! | TAAGCATATGTTATGATTAA+CGG | - | chr4_2:11133996-11134015 | None:intergenic | 20.0% |
| !!! | AAAACCCTTCATTTTTTTAT+TGG | + | chr4_2:11134157-11134176 | Msa0588690:intron | 20.0% |
| !!! | TTTTTCATTTTTCATCATCA+TGG | + | chr4_2:11134513-11134532 | Msa0588690:intron | 20.0% |
| !!! | TAAATTTTGAGAGATTGTAA+AGG | - | chr4_2:11134542-11134561 | None:intergenic | 20.0% |
| !! | ATAAAGACAACAAAAAATCA+AGG | + | chr4_2:11135354-11135373 | Msa0588690:intron | 20.0% |
| !! | TAAAGACAACAAAAAATCAA+GGG | + | chr4_2:11135355-11135374 | Msa0588690:intron | 20.0% |
| !! | ATAATAGCATAAACACTTAT+AGG | + | chr4_2:11135407-11135426 | Msa0588690:intron | 20.0% |
| !!! | AGTAATTGAAATTTTATCAG+CGG | - | chr4_2:11135569-11135588 | None:intergenic | 20.0% |
| !! | TTATGTATGACTTCAAAAAA+TGG | + | chr4_2:11135815-11135834 | Msa0588690:intron | 20.0% |
| !!! | TAAAAAAACTTTTGATGTAG+CGG | - | chr4_2:11135860-11135879 | None:intergenic | 20.0% |
| !!! | ATAACCAAGGTTTTAAATTA+CGG | - | chr4_2:11135905-11135924 | None:intergenic | 20.0% |
| !! | ATACATGTTTATGTATGATT+TGG | + | chr4_2:11135981-11136000 | Msa0588690:intron | 20.0% |
| !!! | TTTATCCTCATATATTTTGA+TGG | + | chr4_2:11136060-11136079 | Msa0588690:CDS | 20.0% |
| !!! | TTATCCTCATATATTTTGAT+GGG | + | chr4_2:11136061-11136080 | Msa0588690:CDS | 20.0% |
| !! | ATTTCACATTTGAAAGAATA+TGG | - | chr4_2:11136175-11136194 | None:intergenic | 20.0% |
| ! | AAATAAGTGATCAAAGAAGA+AGG | - | chr4_2:11133140-11133159 | None:intergenic | 25.0% |
| !!! | ATAGAGCATGTTTTGATAAA+AGG | - | chr4_2:11133345-11133364 | None:intergenic | 25.0% |
| !! | CTTTAATTTCTTGAGGAAAA+AGG | + | chr4_2:11133384-11133403 | Msa0588690:intron | 25.0% |
| !!! | ATTTTTGTTTATGCAGAATG+TGG | + | chr4_2:11133544-11133563 | Msa0588690:intron | 25.0% |
| !!! | TTTTTGTTTATGCAGAATGT+GGG | + | chr4_2:11133545-11133564 | Msa0588690:intron | 25.0% |
| !! | AATCTGTCTTTTATTATTGC+TGG | + | chr4_2:11134210-11134229 | Msa0588690:CDS | 25.0% |
| ! | TTTGTGTACCATACATAAAT+CGG | - | chr4_2:11134607-11134626 | None:intergenic | 25.0% |
| ! | GAGCAAAAAAGTAATTTGAT+TGG | - | chr4_2:11134749-11134768 | None:intergenic | 25.0% |
| !!! | TATAGTTTTAACTAGGCATT+TGG | - | chr4_2:11134779-11134798 | None:intergenic | 25.0% |
| ! | AAATGCCTAGTTAAAACTAT+AGG | + | chr4_2:11134778-11134797 | Msa0588690:intron | 25.0% |
| !!! | TTCTTCCTATAGTTTTAACT+AGG | - | chr4_2:11134786-11134805 | None:intergenic | 25.0% |
| !!! | AAGTATGTTTTATTCTGTAC+AGG | + | chr4_2:11134817-11134836 | Msa0588690:intron | 25.0% |
| ! | TACAAAGCTTATAATGAAAC+CGG | - | chr4_2:11134946-11134965 | None:intergenic | 25.0% |
| !!! | ACTTGCAAATGTTTTTAGTA+AGG | - | chr4_2:11135331-11135350 | None:intergenic | 25.0% |
| ! | TCAAAAAAATCAATCCAAAC+AGG | - | chr4_2:11135381-11135400 | None:intergenic | 25.0% |
| !!! | AGCACTTTAAAATCATTTGT+GGG | - | chr4_2:11135779-11135798 | None:intergenic | 25.0% |
| !!! | TATCCTCATATATTTTGATG+GGG | + | chr4_2:11136062-11136081 | Msa0588690:CDS | 25.0% |
| ! | TTATGAAGAAAAAGGAACAT+TGG | - | chr4_2:11136222-11136241 | None:intergenic | 25.0% |
| ! | CAAGATGATTATGAAGAAAA+AGG | - | chr4_2:11136230-11136249 | None:intergenic | 25.0% |
| !! | CTTTTTCTTCATAATCATCT+TGG | + | chr4_2:11136228-11136247 | Msa0588690:intron | 25.0% |
| ! | TATTATGATTCCCATAACAT+AGG | - | chr4_2:11136363-11136382 | None:intergenic | 25.0% |
| ! | AATCATAATATCTGATCCAA+AGG | + | chr4_2:11136373-11136392 | Msa0588690:CDS | 25.0% |
| !!! | TTAGTTTTAAAACTCACCTT+TGG | - | chr4_2:11136392-11136411 | None:intergenic | 25.0% |
| ! | TAGTATATACATATTTGGGT+TGG | - | chr4_2:11136427-11136446 | None:intergenic | 25.0% |
| ! | AACCCAAATATGTATATACT+AGG | + | chr4_2:11136426-11136445 | Msa0588690:intron | 25.0% |
| ! | ACCCAAATATGTATATACTA+GGG | + | chr4_2:11136427-11136446 | Msa0588690:intron | 25.0% |
| ! | ACCCTAGTATATACATATTT+GGG | - | chr4_2:11136431-11136450 | None:intergenic | 25.0% |
| ! | AACCCTAGTATATACATATT+TGG | - | chr4_2:11136432-11136451 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTATCATTTC+TGG | + | chr4_2:11136583-11136602 | Msa0588690:CDS | 25.0% |
| !! | TTTTTCACTTTGACAAACTA+TGG | + | chr4_2:11136663-11136682 | Msa0588690:CDS | 25.0% |
| ! | TAAATAACTGCATTGGATTA+TGG | + | chr4_2:11136927-11136946 | Msa0588690:three_prime_UTR | 25.0% |
| ! | TGGATGAAAGAGAAATTTTG+AGG | + | chr4_2:11133084-11133103 | Msa0588690:CDS | 30.0% |
| ! | GGATGAAAGAGAAATTTTGA+GGG | + | chr4_2:11133085-11133104 | Msa0588690:CDS | 30.0% |
| AGAAGGAAAATCTTGTTCAT+TGG | - | chr4_2:11133123-11133142 | None:intergenic | 30.0% | |
| ! | ATTTTGTGCAATGGAACAAA+AGG | + | chr4_2:11133445-11133464 | Msa0588690:intron | 30.0% |
| ! | TTTTGTGCAATGGAACAAAA+GGG | + | chr4_2:11133446-11133465 | Msa0588690:intron | 30.0% |
| ! | TGATAAGTTGACTTACCAAA+AGG | + | chr4_2:11133689-11133708 | Msa0588690:CDS | 30.0% |
| !!! | CAAATCGAGATTTTAGTTTG+CGG | + | chr4_2:11133747-11133766 | Msa0588690:intron | 30.0% |
| ! | GGTACTTGACATCAAAATTT+TGG | - | chr4_2:11133849-11133868 | None:intergenic | 30.0% |
| CACATAAAACCCAAATTACA+CGG | - | chr4_2:11133870-11133889 | None:intergenic | 30.0% | |
| !! | TTGGGTTTTATGTGTGTTTT+TGG | + | chr4_2:11133876-11133895 | Msa0588690:intron | 30.0% |
| CCTGCCAATAAAAAAATGAA+GGG | - | chr4_2:11134164-11134183 | None:intergenic | 30.0% | |
| ACCTGCCAATAAAAAAATGA+AGG | - | chr4_2:11134165-11134184 | None:intergenic | 30.0% | |
| CCACAAGTAATAAGAAAACT+GGG | - | chr4_2:11134287-11134306 | None:intergenic | 30.0% | |
| ACCACAAGTAATAAGAAAAC+TGG | - | chr4_2:11134288-11134307 | None:intergenic | 30.0% | |
| CTATCTTGATAGAAAGAGAA+TGG | + | chr4_2:11134358-11134377 | Msa0588690:CDS | 30.0% | |
| TTCACAGTATGACTTCTTAA+AGG | + | chr4_2:11134662-11134681 | Msa0588690:intron | 30.0% | |
| GTATGACTTCTTAAAGGAAA+TGG | + | chr4_2:11134668-11134687 | Msa0588690:intron | 30.0% | |
| AGTTATAGCAGATGCTTTAA+GGG | - | chr4_2:11134970-11134989 | None:intergenic | 30.0% | |
| AAGTTATAGCAGATGCTTTA+AGG | - | chr4_2:11134971-11134990 | None:intergenic | 30.0% | |
| ! | ATAACTTTAGCACTTTGGAA+TGG | + | chr4_2:11134984-11135003 | Msa0588690:CDS | 30.0% |
| AAATCTCTTATGTTGATGCT+TGG | + | chr4_2:11135228-11135247 | Msa0588690:CDS | 30.0% | |
| CATATATCAGCTATTAGAAC+TGG | + | chr4_2:11135724-11135743 | Msa0588690:CDS | 30.0% | |
| !! | GAGCACTTTAAAATCATTTG+TGG | - | chr4_2:11135780-11135799 | None:intergenic | 30.0% |
| TTCACTAGAATTCATAACCA+AGG | - | chr4_2:11135918-11135937 | None:intergenic | 30.0% | |
| TCAGTCCTTTATGGATTTAT+TGG | + | chr4_2:11136337-11136356 | Msa0588690:CDS | 30.0% | |
| ATAGGCCAATAAATCCATAA+AGG | - | chr4_2:11136345-11136364 | None:intergenic | 30.0% | |
| ! | GATTTATTGGCCTATGTTAT+GGG | + | chr4_2:11136350-11136369 | Msa0588690:CDS | 30.0% |
| ATTTAAGTCTCAACTTTCCT+TGG | - | chr4_2:11136732-11136751 | None:intergenic | 30.0% | |
| AGTGAACAAATCATAAAGAG+AGG | + | chr4_2:11136768-11136787 | Msa0588690:three_prime_UTR | 30.0% | |
| ACAAATCATAAAGAGAGGTT+TGG | + | chr4_2:11136773-11136792 | Msa0588690:three_prime_UTR | 30.0% | |
| ATGCAGTTATTTAGAAACGT+GGG | - | chr4_2:11136920-11136939 | None:intergenic | 30.0% | |
| AATGCAGTTATTTAGAAACG+TGG | - | chr4_2:11136921-11136940 | None:intergenic | 30.0% | |
| ACGTTTCTAAATAACTGCAT+TGG | + | chr4_2:11136920-11136939 | Msa0588690:intron | 30.0% | |
| TTTGTTCGAAAATAGACATC+TGG | + | chr4_2:11136981-11137000 | Msa0588690:three_prime_UTR | 30.0% | |
| ! | CAGAAAAACTGTGTTTTATC+TGG | + | chr4_2:11137008-11137027 | Msa0588690:three_prime_UTR | 30.0% |
| GCATGATGAGAAATATTACC+TGG | - | chr4_2:11133195-11133214 | None:intergenic | 35.0% | |
| TTTGTGCAATGGAACAAAAG+GGG | + | chr4_2:11133447-11133466 | Msa0588690:intron | 35.0% | |
| ! | AGAATGTGGGAATTTTCTGT+TGG | + | chr4_2:11133558-11133577 | Msa0588690:intron | 35.0% |
| !! | ATATTTGGGATCACACCTTT+TGG | - | chr4_2:11133707-11133726 | None:intergenic | 35.0% |
| ! | ATGTCAAGTACCGTGTAATT+TGG | + | chr4_2:11133857-11133876 | Msa0588690:intron | 35.0% |
| ! | TGTCAAGTACCGTGTAATTT+GGG | + | chr4_2:11133858-11133877 | Msa0588690:intron | 35.0% |
| !!! | CCCTTCATTTTTTTATTGGC+AGG | + | chr4_2:11134161-11134180 | Msa0588690:intron | 35.0% |
| !!! | ATTGGCAGGTTTTGAAATTG+TGG | + | chr4_2:11134175-11134194 | Msa0588690:intron | 35.0% |
| CAAAGATGAGTAGACAAGTA+AGG | - | chr4_2:11134250-11134269 | None:intergenic | 35.0% | |
| ! | CCCAGTTTTCTTATTACTTG+TGG | + | chr4_2:11134284-11134303 | Msa0588690:CDS | 35.0% |
| GTGGTGATAATCAATATCTG+TGG | + | chr4_2:11134303-11134322 | Msa0588690:CDS | 35.0% | |
| GTGATAATCAATATCTGTGG+TGG | + | chr4_2:11134306-11134325 | Msa0588690:CDS | 35.0% | |
| GAAGTCATACTGTGAAACAT+TGG | - | chr4_2:11134658-11134677 | None:intergenic | 35.0% | |
| AGGTTGTTAGTTATATCCGA+AGG | + | chr4_2:11134837-11134856 | Msa0588690:intron | 35.0% | |
| AGATGAATTCAGTTACGAGA+AGG | + | chr4_2:11134883-11134902 | Msa0588690:CDS | 35.0% | |
| ATAATGAAACCGGTTATGAC+AGG | - | chr4_2:11134936-11134955 | None:intergenic | 35.0% | |
| CTGCTATAACTTTAGCACTT+TGG | + | chr4_2:11134979-11134998 | Msa0588690:CDS | 35.0% | |
| ! | TTTGGAATGGTGTTTCTGTT+TGG | + | chr4_2:11134997-11135016 | Msa0588690:CDS | 35.0% |
| ! | TTGGAATGGTGTTTCTGTTT+GGG | + | chr4_2:11134998-11135017 | Msa0588690:CDS | 35.0% |
| !!! | GGAGTATTGGCTTTTTACAT+CGG | + | chr4_2:11135022-11135041 | Msa0588690:CDS | 35.0% |
| ! | CTTTTTACATCGGTGTATAG+TGG | + | chr4_2:11135032-11135051 | Msa0588690:CDS | 35.0% |
| ! | AAAGCCTTTCTTTTCTCCTT+TGG | - | chr4_2:11135082-11135101 | None:intergenic | 35.0% |
| GAAGTTGAATTGTTCCTTTC+TGG | - | chr4_2:11135119-11135138 | None:intergenic | 35.0% | |
| !! | GATAGTTTGCTTCATGATAC+TGG | + | chr4_2:11135146-11135165 | Msa0588690:CDS | 35.0% |
| !!! | TGCTATTTTTCACTGTACTC+AGG | + | chr4_2:11135300-11135319 | Msa0588690:CDS | 35.0% |
| !! | AGACATTTTTCGGTAGTGTT+TGG | - | chr4_2:11135513-11135532 | None:intergenic | 35.0% |
| TCAATTACTTGCTTCAGCTT+TGG | + | chr4_2:11135580-11135599 | Msa0588690:intron | 35.0% | |
| ! | TATACCTTCCCATTCTAAAG+TGG | - | chr4_2:11135620-11135639 | None:intergenic | 35.0% |
| GGTATACCTGCATATGTAAT+TGG | + | chr4_2:11135634-11135653 | Msa0588690:CDS | 35.0% | |
| GCTATTCCAATTACATATGC+AGG | - | chr4_2:11135643-11135662 | None:intergenic | 35.0% | |
| !! | GATATATGATACTCTAGAGC+AGG | - | chr4_2:11135712-11135731 | None:intergenic | 35.0% |
| ! | TATGTATGATTTGGATGCAG+TGG | + | chr4_2:11135990-11136009 | Msa0588690:intron | 35.0% |
| ! | TACCTTGTTTAGCTGCAATA+TGG | + | chr4_2:11136023-11136042 | Msa0588690:CDS | 35.0% |
| ATCCATATTGCAGCTAAACA+AGG | - | chr4_2:11136028-11136047 | None:intergenic | 35.0% | |
| GCTGCAATATGGATCTATAA+TGG | + | chr4_2:11136034-11136053 | Msa0588690:CDS | 35.0% | |
| ACTCCCCATCAAAATATATG+AGG | - | chr4_2:11136068-11136087 | None:intergenic | 35.0% | |
| ! | GGATTTATTGGCCTATGTTA+TGG | + | chr4_2:11136349-11136368 | Msa0588690:CDS | 35.0% |
| !! | TTTATGATTTGTTCACTCCG+AGG | - | chr4_2:11136765-11136784 | None:intergenic | 35.0% |
| ! | TTTGGCTGTGCAATTTTTGT+TGG | + | chr4_2:11136791-11136810 | Msa0588690:three_prime_UTR | 35.0% |
| GGTGAAATCATGAGATTAGT+AGG | + | chr4_2:11136827-11136846 | Msa0588690:three_prime_UTR | 35.0% | |
| ATGAGATTAGTAGGCTACAT+AGG | + | chr4_2:11136836-11136855 | Msa0588690:three_prime_UTR | 35.0% | |
| TGCAGTTATTTAGAAACGTG+GGG | - | chr4_2:11136919-11136938 | None:intergenic | 35.0% | |
| TTCGAAAATAGACATCTGGA+CGG | + | chr4_2:11136985-11137004 | Msa0588690:three_prime_UTR | 35.0% | |
| !! | TACTTTCGAAGTGCTTTTGA+AGG | + | chr4_2:11137036-11137055 | Msa0588690:three_prime_UTR | 35.0% |
| !!! | TTGGCCACTTTTTAGCTAGA+TGG | + | chr4_2:11133165-11133184 | Msa0588690:CDS | 40.0% |
| !!! | TGGCCACTTTTTAGCTAGAT+GGG | + | chr4_2:11133166-11133185 | Msa0588690:CDS | 40.0% |
| AACCCCATCTAGCTAAAAAG+TGG | - | chr4_2:11133172-11133191 | None:intergenic | 40.0% | |
| TTGTGCAATGGAACAAAAGG+GGG | + | chr4_2:11133448-11133467 | Msa0588690:intron | 40.0% | |
| !!! | AAGGGGGTCACTTTTTGTTT+TGG | + | chr4_2:11133464-11133483 | Msa0588690:intron | 40.0% |
| CTGCTGTATGCAGCAATATA+TGG | + | chr4_2:11133612-11133631 | Msa0588690:CDS | 40.0% | |
| TTGGTCCTTTGATTGGAACA+TGG | + | chr4_2:11133664-11133683 | Msa0588690:CDS | 40.0% | |
| TGGTCCTTTGATTGGAACAT+GGG | + | chr4_2:11133665-11133684 | Msa0588690:CDS | 40.0% | |
| TCAACCCATGTTCCAATCAA+AGG | - | chr4_2:11133672-11133691 | None:intergenic | 40.0% | |
| CCAAATTCATAGCAGCAACA+AGG | - | chr4_2:11134125-11134144 | None:intergenic | 40.0% | |
| CCTTGTTGCTGCTATGAATT+TGG | + | chr4_2:11134122-11134141 | Msa0588690:intron | 40.0% | |
| !!! | GCAGGTTTTGAAATTGTGGT+TGG | + | chr4_2:11134179-11134198 | Msa0588690:intron | 40.0% |
| GACAAGTAAGGTAACTACAG+TGG | - | chr4_2:11134238-11134257 | None:intergenic | 40.0% | |
| ATCAATATCTGTGGTGGCAT+TGG | + | chr4_2:11134312-11134331 | Msa0588690:CDS | 40.0% | |
| ATTCATCTTCGTCAGCAGTT+CGG | - | chr4_2:11134871-11134890 | None:intergenic | 40.0% | |
| TTTCTGTTTGGGTGGAGTAT+TGG | + | chr4_2:11135009-11135028 | Msa0588690:CDS | 40.0% | |
| GTAGCCAAAGGAGAAAAGAA+AGG | + | chr4_2:11135075-11135094 | Msa0588690:CDS | 40.0% | |
| CAACACAAAGTGATCCAGAA+AGG | + | chr4_2:11135102-11135121 | Msa0588690:CDS | 40.0% | |
| TGCTTCATGATACTGGTGAT+AGG | + | chr4_2:11135153-11135172 | Msa0588690:CDS | 40.0% | |
| TACTGGTGATAGGTCAGAAT+TGG | + | chr4_2:11135163-11135182 | Msa0588690:CDS | 40.0% | |
| ! | AATTGGTGGATGGAAAAAGC+AGG | + | chr4_2:11135180-11135199 | Msa0588690:CDS | 40.0% |
| !! | GCAGGAAAACAATTTTCGAG+TGG | + | chr4_2:11135198-11135217 | Msa0588690:CDS | 40.0% |
| CAAAAAATCAAGGGCCTGTT+TGG | + | chr4_2:11135364-11135383 | Msa0588690:intron | 40.0% | |
| ! | GGACTATTTGAGAGAGCTTT+TGG | + | chr4_2:11135428-11135447 | Msa0588690:intron | 40.0% |
| ! | ACATGTCCATAAGCTGCTTT+CGG | + | chr4_2:11135463-11135482 | Msa0588690:intron | 40.0% |
| ! | GTTTGGAACTTGAGAGCTTA+TGG | - | chr4_2:11135496-11135515 | None:intergenic | 40.0% |
| ! | TGATGACAGCCACTTTAGAA+TGG | + | chr4_2:11135608-11135627 | Msa0588690:CDS | 40.0% |
| !! | GATGACAGCCACTTTAGAAT+GGG | + | chr4_2:11135609-11135628 | Msa0588690:CDS | 40.0% |
| TATGTAATTGGAATAGCGCG+AGG | + | chr4_2:11135646-11135665 | Msa0588690:CDS | 40.0% | |
| CAGCTATTAGAACTGGACTT+TGG | + | chr4_2:11135731-11135750 | Msa0588690:CDS | 40.0% | |
| GAACTGGACTTTGGTCTATT+TGG | + | chr4_2:11135740-11135759 | Msa0588690:CDS | 40.0% | |
| ACTTTGGTCTATTTGGTCTC+AGG | + | chr4_2:11135747-11135766 | Msa0588690:CDS | 40.0% | |
| TTGCAGCTAAACAAGGTAGA+AGG | - | chr4_2:11136021-11136040 | None:intergenic | 40.0% | |
| GTCTGTACTTCAACAAATGC+AGG | + | chr4_2:11136126-11136145 | Msa0588690:intron | 40.0% | |
| ACAGAACCTTGTTCCTGAAT+CGG | + | chr4_2:11136280-11136299 | Msa0588690:intron | 40.0% | |
| ACAATCAAACGATCCGATTC+AGG | - | chr4_2:11136296-11136315 | None:intergenic | 40.0% | |
| GAATCGGATCGTTTGATTGT+TGG | + | chr4_2:11136296-11136315 | Msa0588690:CDS | 40.0% | |
| GAGTTCACTTCAGTCCTTTA+TGG | + | chr4_2:11136328-11136347 | Msa0588690:CDS | 40.0% | |
| GAATGTGACATACAGAGAAC+AGG | - | chr4_2:11136550-11136569 | None:intergenic | 40.0% | |
| GTTCTCTGTATGTCACATTC+AGG | + | chr4_2:11136550-11136569 | Msa0588690:intron | 40.0% | |
| TATGTCACATTCAGGAGTTC+TGG | + | chr4_2:11136558-11136577 | Msa0588690:intron | 40.0% | |
| CACTTTGACAAACTATGGTG+TGG | + | chr4_2:11136668-11136687 | Msa0588690:CDS | 40.0% | |
| TGCATGATCGTTGTAAGCTA+TGG | + | chr4_2:11136700-11136719 | Msa0588690:exon | 40.0% | |
| GCATGATCGTTGTAAGCTAT+GGG | + | chr4_2:11136701-11136720 | Msa0588690:exon | 40.0% | |
| CATGATCGTTGTAAGCTATG+GGG | + | chr4_2:11136702-11136721 | Msa0588690:exon | 40.0% | |
| TTGAGACTTAAATCTCAGCG+AGG | + | chr4_2:11136739-11136758 | Msa0588690:three_prime_UTR | 40.0% | |
| TTTGTTGGACTTCAGAGTGA+AGG | + | chr4_2:11136806-11136825 | Msa0588690:three_prime_UTR | 40.0% | |
| AGATTAGTAGGCTACATAGG+AGG | + | chr4_2:11136839-11136858 | Msa0588690:three_prime_UTR | 40.0% | |
| TTCTCTCAAGCCCTTACTTT+AGG | - | chr4_2:11136886-11136905 | None:intergenic | 40.0% | |
| !! | TTTCGAAGTGCTTTTGAAGG+CGG | + | chr4_2:11137039-11137058 | Msa0588690:three_prime_UTR | 40.0% |
| AAGGTTTCTCCACTTACTCT+AGG | + | chr4_2:11137064-11137083 | Msa0588690:three_prime_UTR | 40.0% | |
| AGGTTTCTCCACTTACTCTA+GGG | + | chr4_2:11137065-11137084 | Msa0588690:three_prime_UTR | 40.0% | |
| !!! | GGCCACTTTTTAGCTAGATG+GGG | + | chr4_2:11133167-11133186 | Msa0588690:CDS | 45.0% |
| !! | TTTTAGCTAGATGGGGTTCC+AGG | + | chr4_2:11133174-11133193 | Msa0588690:CDS | 45.0% |
| TCTGCTTCCATTGCACTGTT+TGG | + | chr4_2:11133645-11133664 | Msa0588690:CDS | 45.0% | |
| CAAAGGACCAAACAGTGCAA+TGG | - | chr4_2:11133655-11133674 | None:intergenic | 45.0% | |
| GCACTGTTTGGTCCTTTGAT+TGG | + | chr4_2:11133657-11133676 | Msa0588690:CDS | 45.0% | |
| GTCAAATGTGATTCGCGTTG+TGG | + | chr4_2:11133811-11133830 | Msa0588690:intron | 45.0% | |
| ! | GGAGTACTTTCAACTCTTGC+TGG | + | chr4_2:11134333-11134352 | Msa0588690:CDS | 45.0% |
| CTTCTTGCACCTGTCATAAC+CGG | + | chr4_2:11134924-11134943 | Msa0588690:CDS | 45.0% | |
| ! | GAATGGTGTTTCTGTTTGGG+TGG | + | chr4_2:11135001-11135020 | Msa0588690:CDS | 45.0% |
| CTTTGTGTCGAAGTAGCCAA+AGG | + | chr4_2:11135063-11135082 | Msa0588690:CDS | 45.0% | |
| TGGTGATAGGTCAGAATTGG+TGG | + | chr4_2:11135166-11135185 | Msa0588690:CDS | 45.0% | |
| GATAGGTCAGAATTGGTGGA+TGG | + | chr4_2:11135170-11135189 | Msa0588690:CDS | 45.0% | |
| GATAAGCCGAAAGCAGCTTA+TGG | - | chr4_2:11135472-11135491 | None:intergenic | 45.0% | |
| !! | ACAGCCACTTTAGAATGGGA+AGG | + | chr4_2:11135613-11135632 | Msa0588690:CDS | 45.0% |
| ! | CGAGGAATAAGCGCTGTAAT+CGG | + | chr4_2:11135664-11135683 | Msa0588690:CDS | 45.0% |
| ATGTCTCTGCAACTGTATCG+CGG | + | chr4_2:11135879-11135898 | Msa0588690:intron | 45.0% | |
| ! | GCGGCCGTAATTTAAAACCT+TGG | + | chr4_2:11135898-11135917 | Msa0588690:intron | 45.0% |
| AACGATCCGATTCAGGAACA+AGG | - | chr4_2:11136289-11136308 | None:intergenic | 45.0% | |
| TCGGATCGTTTGATTGTTGG+AGG | + | chr4_2:11136299-11136318 | Msa0588690:CDS | 45.0% | |
| GAAAAATATGCTTCCGCACG+CGG | - | chr4_2:11136649-11136668 | None:intergenic | 45.0% | |
| !! | AAGCCCTTACTTTAGGACCT+CGG | - | chr4_2:11136879-11136898 | None:intergenic | 45.0% |
| !! | TTCGAAGTGCTTTTGAAGGC+GGG | + | chr4_2:11137040-11137059 | Msa0588690:three_prime_UTR | 45.0% |
| ! | CAGGCTGGCCGATTTATGTA+TGG | + | chr4_2:11134596-11134615 | Msa0588690:intron | 50.0% |
| CAGTTCGGATGGTTGACCTT+CGG | - | chr4_2:11134856-11134875 | None:intergenic | 50.0% | |
| ATCTTCGTCAGCAGTTCGGA+TGG | - | chr4_2:11134867-11134886 | None:intergenic | 50.0% | |
| TGGCTACTTCGACACAAAGC+AGG | - | chr4_2:11135062-11135081 | None:intergenic | 50.0% | |
| CAGCAAGAAGTTGTGCTTCC+TGG | + | chr4_2:11135263-11135282 | Msa0588690:CDS | 50.0% | |
| AGCGGCTTAGATCGCTATCA+TGG | - | chr4_2:11135842-11135861 | None:intergenic | 50.0% | |
| GGAACACATGGATGCAGTAG+AGG | - | chr4_2:11136628-11136647 | None:intergenic | 50.0% | |
| CTTAAATCTCAGCGAGGCCT+CGG | + | chr4_2:11136745-11136764 | Msa0588690:three_prime_UTR | 50.0% | |
| CATAGGAGGCCGAGTAAGTT+TGG | + | chr4_2:11136853-11136872 | Msa0588690:intron | 50.0% | |
| TTGGCCGAGGTCCTAAAGTA+AGG | + | chr4_2:11136872-11136891 | Msa0588690:intron | 50.0% | |
| TGGCCGAGGTCCTAAAGTAA+GGG | + | chr4_2:11136873-11136892 | Msa0588690:intron | 50.0% | |
| !! | AGTGCTTTTGAAGGCGGGAA+AGG | + | chr4_2:11137045-11137064 | Msa0588690:three_prime_UTR | 50.0% |
| GCTGCATACAGCAGTGAGTC+TGG | - | chr4_2:11133606-11133625 | None:intergenic | 55.0% | |
| CTAGGTGTGACCGTGTGAGT+CGG | - | chr4_2:11134575-11134594 | None:intergenic | 55.0% | |
| ATAAATCGGCCAGCCTGCCT+AGG | - | chr4_2:11134593-11134612 | None:intergenic | 55.0% | |
| GACAGGTGCAAGAAGCTTGC+AGG | - | chr4_2:11134919-11134938 | None:intergenic | 55.0% | |
| !! | TGTGCTTCCTGGACTAGCTC+TGG | + | chr4_2:11135274-11135293 | Msa0588690:CDS | 55.0% |
| AGCAAAGCCAGAGCTAGTCC+AGG | - | chr4_2:11135284-11135303 | None:intergenic | 55.0% | |
| !! | TGGGGAGTGTCGCATTGTCT+CGG | + | chr4_2:11136080-11136099 | Msa0588690:CDS | 55.0% |
| AGTGTCGCATTGTCTCGGCT+TGG | + | chr4_2:11136085-11136104 | Msa0588690:CDS | 55.0% | |
| !! | CATTGTCTCGGCTTGGACTC+TGG | + | chr4_2:11136092-11136111 | Msa0588690:CDS | 55.0% |
| GTAAGCTATGGGGCGAACCA+AGG | + | chr4_2:11136712-11136731 | Msa0588690:three_prime_UTR | 55.0% | |
| GGACCTCGGCCAAACTTACT+CGG | - | chr4_2:11136865-11136884 | None:intergenic | 55.0% | |
| AGGGTCGACCCTAGAGTAAG+TGG | - | chr4_2:11137076-11137095 | None:intergenic | 55.0% | |
| ! | ACTCGTCCAGCCGACTCACA+CGG | + | chr4_2:11134562-11134581 | Msa0588690:intron | 60.0% |
| CGACTCACACGGTCACACCT+AGG | + | chr4_2:11134573-11134592 | Msa0588690:intron | 60.0% | |
| TCACACGGTCACACCTAGGC+AGG | + | chr4_2:11134577-11134596 | Msa0588690:intron | 60.0% | |
| GCATCCATGTGTTCCGCGTG+CGG | + | chr4_2:11136633-11136652 | Msa0588690:CDS | 60.0% | |
| AGGCCGAGTAAGTTTGGCCG+AGG | + | chr4_2:11136859-11136878 | Msa0588690:intron | 60.0% | |
| GTGTGACCGTGTGAGTCGGC+TGG | - | chr4_2:11134571-11134590 | None:intergenic | 65.0% | |
| ACGGTCACACCTAGGCAGGC+TGG | + | chr4_2:11134581-11134600 | Msa0588690:intron | 65.0% | |
| GCTTCCGCACGCGGAACACA+TGG | - | chr4_2:11136640-11136659 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 11133083 | 11137106 | 11133083 | ID=Msa0588690;Name=Msa0588690 |
| chr4_2 | mRNA | 11133083 | 11137106 | 11133083 | ID=Msa0588690-mRNA-1;Parent=Msa0588690;Name=Msa0588690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.87|0.77|1|0.87|0.77|9|344|493 |
| chr4_2 | exon | 11133083 | 11133195 | 11133083 | ID=Msa0588690-mRNA-1:exon:3216;Parent=Msa0588690-mRNA-1 |
| chr4_2 | exon | 11133560 | 11133710 | 11133560 | ID=Msa0588690-mRNA-1:exon:3217;Parent=Msa0588690-mRNA-1 |
| chr4_2 | exon | 11134183 | 11134379 | 11134183 | ID=Msa0588690-mRNA-1:exon:3218;Parent=Msa0588690-mRNA-1 |
| chr4_2 | exon | 11134839 | 11135321 | 11134839 | ID=Msa0588690-mRNA-1:exon:3219;Parent=Msa0588690-mRNA-1 |
| chr4_2 | exon | 11135597 | 11135768 | 11135597 | ID=Msa0588690-mRNA-1:exon:3220;Parent=Msa0588690-mRNA-1 |
| chr4_2 | exon | 11136010 | 11136129 | 11136010 | ID=Msa0588690-mRNA-1:exon:3221;Parent=Msa0588690-mRNA-1 |
| chr4_2 | exon | 11136284 | 11136394 | 11136284 | ID=Msa0588690-mRNA-1:exon:3222;Parent=Msa0588690-mRNA-1 |
| chr4_2 | exon | 11136572 | 11136865 | 11136572 | ID=Msa0588690-mRNA-1:exon:3223;Parent=Msa0588690-mRNA-1 |
| chr4_2 | exon | 11136922 | 11137106 | 11136922 | ID=Msa0588690-mRNA-1:exon:3224;Parent=Msa0588690-mRNA-1 |
| chr4_2 | CDS | 11133083 | 11133195 | 11133083 | ID=Msa0588690-mRNA-1:cds;Parent=Msa0588690-mRNA-1 |
| chr4_2 | CDS | 11133560 | 11133710 | 11133560 | ID=Msa0588690-mRNA-1:cds;Parent=Msa0588690-mRNA-1 |
| chr4_2 | CDS | 11134183 | 11134379 | 11134183 | ID=Msa0588690-mRNA-1:cds;Parent=Msa0588690-mRNA-1 |
| chr4_2 | CDS | 11134839 | 11135321 | 11134839 | ID=Msa0588690-mRNA-1:cds;Parent=Msa0588690-mRNA-1 |
| chr4_2 | CDS | 11135597 | 11135768 | 11135597 | ID=Msa0588690-mRNA-1:cds;Parent=Msa0588690-mRNA-1 |
| chr4_2 | CDS | 11136010 | 11136129 | 11136010 | ID=Msa0588690-mRNA-1:cds;Parent=Msa0588690-mRNA-1 |
| chr4_2 | CDS | 11136284 | 11136394 | 11136284 | ID=Msa0588690-mRNA-1:cds;Parent=Msa0588690-mRNA-1 |
| chr4_2 | CDS | 11136572 | 11136706 | 11136572 | ID=Msa0588690-mRNA-1:cds;Parent=Msa0588690-mRNA-1 |
| chr4_2 | three_prime_UTR | 11136707 | 11136865 | 11136707 | ID=Msa0588690-mRNA-1:three_prime_utr;Parent=Msa0588690-mRNA-1 |
| chr4_2 | three_prime_UTR | 11136922 | 11137106 | 11136922 | ID=Msa0588690-mRNA-1:three_prime_utr;Parent=Msa0588690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
