AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589210 MtrunA17_Chr4g0005491 97.317 410 11 0 1 410 1 410 0.0 839
Msa0589210 MtrunA17_Chr7g0243301 78.431 408 85 1 6 410 5 412 0.0 686
Msa0589210 MtrunA17_Chr4g0005481 55.096 363 153 4 45 407 94 446 7.56e-146 422
Msa0589210 MtrunA17_Chr3g0114101 51.862 349 162 3 62 409 89 432 4.23e-134 391
Msa0589210 MtrunA17_Chr5g0437601 51.576 349 163 3 62 409 83 426 2.16e-133 389
Msa0589210 MtrunA17_Chr8g0360521 46.135 401 195 7 21 408 18 410 1.30e-124 367
Msa0589210 MtrunA17_Chr3g0113671 49.284 349 169 5 62 407 106 449 2.93e-120 357
Msa0589210 MtrunA17_Chr4g0006991 45.714 350 180 6 61 407 85 427 1.08e-109 329
Msa0589210 MtrunA17_Chr5g0437291 45.070 355 184 6 62 410 165 514 1.51e-108 329
Msa0589210 MtrunA17_Chr7g0242701 45.559 349 182 5 61 407 85 427 4.11e-104 315
Msa0589210 MtrunA17_Chr1g0175671 39.335 361 199 8 57 410 165 512 4.25e-85 269
Msa0589210 MtrunA17_Chr4g0068111 36.915 363 207 8 54 408 106 454 3.74e-81 257
Msa0589210 MtrunA17_Chr1g0210771 36.723 354 202 9 54 407 51 382 3.13e-80 252
Msa0589210 MtrunA17_Chr3g0105301 34.463 354 212 7 60 409 41 378 5.92e-80 251
Msa0589210 MtrunA17_Chr5g0413271 38.571 350 197 8 61 408 144 477 6.22e-80 254
Msa0589210 MtrunA17_Chr7g0258851 37.673 361 205 8 57 410 243 590 1.71e-79 256
Msa0589210 MtrunA17_Chr5g0430371 35.180 361 208 7 60 409 56 401 3.62e-78 247
Msa0589210 MtrunA17_Chr8g0368461 37.566 378 203 9 50 408 166 529 7.64e-78 250
Msa0589210 MtrunA17_Chr1g0171171 36.571 350 199 9 58 407 49 375 1.29e-77 244
Msa0589210 MtrunA17_Chr7g0269991 38.701 354 192 9 62 410 137 470 1.16e-75 243
Msa0589210 MtrunA17_Chr3g0097891 34.121 381 216 9 25 405 3 348 1.17e-74 236
Msa0589210 MtrunA17_Chr2g0287901 38.567 363 190 13 57 405 92 435 5.13e-74 238
Msa0589210 MtrunA17_Chr2g0314801 35.677 384 207 11 26 407 8 353 1.04e-73 234
Msa0589210 MtrunA17_Chr7g0259711 35.870 368 206 8 56 410 85 435 3.78e-73 236
Msa0589210 MtrunA17_Chr3g0085081 36.034 358 194 9 52 407 24 348 5.19e-72 229
Msa0589210 MtrunA17_Chr4g0045951 32.225 391 236 10 17 407 1 362 5.41e-70 224
Msa0589210 MtrunA17_Chr3g0091031 35.180 361 198 9 49 407 22 348 5.57e-70 224
Msa0589210 MtrunA17_Chr3g0085071 34.262 359 204 8 49 407 37 363 5.74e-70 224
Msa0589210 MtrunA17_Chr1g0213281 34.278 353 217 7 62 409 175 517 7.74e-70 229
Msa0589210 MtrunA17_Chr4g0045941 34.746 354 203 8 54 407 25 350 1.17e-69 223
Msa0589210 MtrunA17_Chr5g0413851 33.938 386 224 13 21 405 2 357 1.19e-68 221
Msa0589210 MtrunA17_Chr4g0071391 35.294 357 205 10 58 405 105 444 1.34e-68 224
Msa0589210 MtrunA17_Chr4g0041011 33.046 348 204 9 62 409 47 365 7.33e-66 214
Msa0589210 MtrunA17_Chr2g0325481 33.429 350 202 10 60 408 48 367 4.30e-65 212
Msa0589210 MtrunA17_Chr2g0283581 33.526 346 201 9 62 407 42 358 1.34e-63 208
Msa0589210 MtrunA17_Chr2g0314791 31.486 397 214 12 19 408 1 346 3.26e-62 204
Msa0589210 MtrunA17_Chr3g0126021 30.811 370 223 7 50 410 117 462 1.04e-61 206
Msa0589210 MtrunA17_Chr8g0384151 29.810 369 228 8 46 408 74 417 3.94e-58 196
Msa0589210 MtrunA17_Chr6g0456681 31.566 396 238 13 26 403 24 404 7.90e-46 163
Msa0589210 MtrunA17_Chr5g0414091 31.025 361 212 15 62 403 85 427 1.63e-41 152
Msa0589210 MtrunA17_Chr5g0414061 32.065 368 209 13 60 407 92 438 1.67e-41 152
Msa0589210 MtrunA17_Chr6g0456691 30.645 372 221 14 49 403 64 415 1.36e-40 149
Msa0589210 MtrunA17_Chr8g0347321 29.301 372 224 15 51 403 84 435 2.36e-40 149
Msa0589210 MtrunA17_Chr1g0209921 30.645 248 161 5 48 294 30 267 2.49e-39 142
Msa0589210 MtrunA17_Chr6g0476041 28.571 371 235 13 53 407 158 514 5.02e-39 146
Msa0589210 MtrunA17_Chr4g0070341 28.571 364 218 12 62 407 132 471 6.38e-39 145
Msa0589210 MtrunA17_Chr7g0226991 30.952 378 222 15 46 403 40 398 6.80e-39 144
Msa0589210 MtrunA17_Chr1g0188191 29.315 365 226 13 60 407 232 581 6.70e-38 144
Msa0589210 MtrunA17_Chr8g0384421 27.577 388 218 16 50 407 118 472 4.91e-37 140
Msa0589210 MtrunA17_Chr5g0414041 31.200 375 216 15 50 403 76 429 9.71e-37 139
Msa0589210 MtrunA17_Chr8g0391481 29.894 378 235 16 41 403 6 368 4.32e-36 136
Msa0589210 MtrunA17_Chr1g0178081 35.545 211 123 5 49 248 42 250 6.79e-36 135
Msa0589210 MtrunA17_Chr1g0178081 38.889 108 56 2 303 410 247 344 8.41e-16 78.2
Msa0589210 MtrunA17_Chr5g0414051 29.330 358 221 13 62 403 75 416 3.46e-35 134
Msa0589210 MtrunA17_Chr3g0140371 30.194 361 211 16 62 403 18 356 1.86e-33 128
Msa0589210 MtrunA17_Chr8g0387921 26.575 365 224 16 61 403 73 415 5.37e-33 128
Msa0589210 MtrunA17_Chr4g0049421 29.551 379 200 16 62 407 48 392 1.97e-32 126
Msa0589210 MtrunA17_Chr2g0283851 27.224 371 232 14 50 403 47 396 2.97e-29 117
Msa0589210 MtrunA17_Chr6g0451321 25.753 365 229 11 62 407 116 457 6.75e-29 117
Msa0589210 MtrunA17_Chr6g0455901 29.570 372 210 16 62 407 71 416 1.23e-27 113
Msa0589210 MtrunA17_Chr7g0221271 37.857 140 76 3 56 191 73 205 8.07e-24 98.2
Msa0589210 MtrunA17_Chr7g0221291 44.792 96 52 1 56 151 73 167 1.26e-22 94.0
Msa0589210 MtrunA17_Chr2g0287931 39.496 119 63 3 123 234 2 118 1.14e-19 84.3
Msa0589210 MtrunA17_Chr3g0085101 37.383 107 62 2 259 365 4 105 3.57e-16 74.3
Msa0589210 MtrunA17_Chr2g0287911 48.387 62 24 2 57 118 56 109 2.75e-14 68.9
Msa0589210 MtrunA17_Chr5g0414081 36.090 133 70 5 277 403 72 195 6.81e-13 67.4
Msa0589210 MtrunA17_Chr5g0429191 57.447 47 17 1 354 400 2 45 6.31e-12 60.1
Msa0589210 MtrunA17_Chr1g0209931 40.000 80 34 2 329 408 28 93 7.97e-12 61.6
Msa0589210 MtrunA17_Chr7g0221281 25.738 237 153 10 178 403 8 232 6.99e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589210 AT2G38320.1 65.829 398 129 3 17 408 9 405 0.0 552
Msa0589210 AT2G38320.2 70.279 323 94 2 87 408 1 322 1.96e-171 483
Msa0589210 AT5G01620.2 55.460 348 147 4 61 407 109 449 2.33e-144 418
Msa0589210 AT5G01620.1 55.460 348 147 4 61 407 109 449 2.33e-144 418
Msa0589210 AT5G01620.3 55.460 348 147 4 61 407 117 457 4.70e-144 418
Msa0589210 AT2G40320.1 51.862 349 162 3 62 409 81 424 2.05e-134 392
Msa0589210 AT3G11030.1 49.570 349 171 3 62 409 106 450 2.72e-126 372
Msa0589210 AT2G40150.1 49.304 359 168 5 61 410 70 423 4.15e-125 369
Msa0589210 AT3G55990.1 50.141 355 165 6 61 410 139 486 2.93e-123 366
Msa0589210 AT1G73140.1 49.432 352 167 6 62 410 67 410 2.20e-121 358
Msa0589210 AT5G01360.2 45.559 349 183 4 61 407 35 378 1.66e-112 335
Msa0589210 AT5G01360.1 45.559 349 183 4 61 407 91 434 5.23e-112 335
Msa0589210 AT2G40160.2 45.109 368 187 8 51 410 66 426 1.83e-108 327
Msa0589210 AT2G40160.1 45.109 368 187 8 51 410 66 426 4.64e-108 325
Msa0589210 AT3G54260.1 36.111 396 221 10 22 408 3 375 1.33e-82 258
Msa0589210 AT5G06700.1 40.223 358 192 9 56 405 249 592 3.63e-82 264
Msa0589210 AT5G58600.1 36.723 354 205 7 60 409 64 402 4.38e-81 255
Msa0589210 AT5G49340.1 37.500 360 207 8 56 408 94 442 4.14e-80 254
Msa0589210 AT1G60790.1 35.385 390 234 8 25 408 156 533 1.12e-79 255
Msa0589210 AT3G12060.1 38.265 392 214 11 28 408 162 536 1.13e-79 256
Msa0589210 AT3G06080.2 39.167 360 194 10 57 405 98 443 4.71e-79 252
Msa0589210 AT5G19160.1 37.260 365 197 9 57 405 94 442 3.13e-77 247
Msa0589210 AT3G62390.1 35.338 399 229 10 20 410 97 474 8.37e-77 246
Msa0589210 AT2G40160.3 46.988 249 126 5 51 295 66 312 2.59e-76 239
Msa0589210 AT1G78710.1 34.375 352 204 8 57 408 33 357 7.47e-76 240
Msa0589210 AT2G30010.1 36.288 361 203 11 60 409 54 398 4.51e-74 237
Msa0589210 AT2G30010.2 36.288 361 203 11 60 409 97 441 8.43e-74 237
Msa0589210 AT3G14850.2 35.328 351 202 8 57 407 29 354 2.12e-73 234
Msa0589210 AT5G20590.1 36.639 363 201 9 57 408 136 480 2.67e-72 234
Msa0589210 AT1G29050.1 32.620 374 223 8 34 407 34 378 4.66e-72 231
Msa0589210 AT2G30900.1 35.328 351 198 10 62 409 43 367 2.71e-70 226
Msa0589210 AT5G06230.2 35.294 374 213 7 49 408 7 365 2.88e-70 226
Msa0589210 AT5G06230.1 35.294 374 213 7 49 408 48 406 7.80e-70 226
Msa0589210 AT2G34070.1 33.524 349 203 9 60 407 63 383 1.96e-68 222
Msa0589210 AT2G31110.2 33.247 388 230 10 21 407 3 362 2.85e-66 215
Msa0589210 AT3G11570.1 35.191 341 192 8 79 408 98 420 7.74e-65 214
Msa0589210 AT2G42570.1 32.665 349 207 8 60 408 45 365 5.67e-64 209
Msa0589210 AT1G48880.1 31.852 405 234 11 19 410 67 442 1.65e-59 200
Msa0589210 AT5G19160.2 39.754 244 141 2 57 295 94 336 4.07e-59 196
Msa0589210 AT3G06080.1 40.486 247 135 5 57 295 98 340 1.09e-56 190
Msa0589210 AT1G78710.2 30.966 352 163 10 57 408 26 297 6.37e-56 186
Msa0589210 AT5G58600.2 38.397 237 136 5 60 295 64 291 3.71e-53 179
Msa0589210 AT3G62390.2 35.106 282 174 5 20 296 97 374 1.77e-52 181
Msa0589210 AT5G20590.2 36.400 250 141 4 57 295 136 378 4.47e-48 168
Msa0589210 AT5G06230.3 34.749 259 156 4 49 295 48 305 4.40e-47 164
Msa0589210 AT3G14850.1 33.818 275 158 7 133 407 1 251 2.21e-46 160
Msa0589210 AT2G30900.2 34.513 226 138 5 62 286 43 259 4.60e-43 152
Msa0589210 AT2G31110.3 32.584 267 169 5 21 286 3 259 9.18e-43 151
Msa0589210 AT2G34070.2 31.159 276 162 8 133 407 1 249 2.31e-42 149
Msa0589210 AT5G64020.1 29.810 369 219 15 62 407 57 408 2.35e-42 154
Msa0589210 AT5G20680.6 29.570 372 204 12 62 407 118 457 1.03e-41 153
Msa0589210 AT5G20680.2 29.570 372 204 12 62 407 194 533 3.57e-41 153
Msa0589210 AT5G20680.4 29.570 372 204 12 62 407 212 551 4.03e-41 153
Msa0589210 AT5G20680.1 29.570 372 204 12 62 407 212 551 4.03e-41 153
Msa0589210 AT5G20680.3 29.570 372 204 12 62 407 212 551 4.03e-41 153
Msa0589210 AT5G20680.5 29.570 372 204 12 62 407 212 551 4.03e-41 153
Msa0589210 AT3G02440.1 30.226 354 219 11 62 403 127 464 3.13e-40 149
Msa0589210 AT2G37720.1 29.428 367 211 16 62 407 143 482 3.32e-40 149
Msa0589210 AT3G02440.2 30.226 354 219 11 62 403 135 472 3.39e-40 149
Msa0589210 AT5G51640.1 27.865 384 228 14 51 407 127 488 2.42e-39 147
Msa0589210 AT4G25360.1 28.125 384 222 13 53 407 166 524 4.25e-39 147
Msa0589210 AT4G25360.2 28.125 384 222 13 53 407 166 524 4.25e-39 147
Msa0589210 AT1G01430.1 28.421 380 232 15 53 410 89 450 3.46e-38 143
Msa0589210 AT5G64470.3 29.759 373 222 15 53 408 46 395 1.02e-37 141
Msa0589210 AT5G15890.1 27.822 381 213 13 49 403 174 518 3.36e-37 142
Msa0589210 AT1G70230.1 27.887 355 217 11 62 403 79 407 4.34e-37 140
Msa0589210 AT5G64470.2 29.443 377 224 16 53 408 46 401 2.99e-36 137
Msa0589210 AT4G01080.1 27.696 408 247 13 23 410 54 433 3.73e-35 135
Msa0589210 AT2G14530.1 27.100 369 226 13 60 407 60 406 3.52e-34 132
Msa0589210 AT5G15900.1 26.716 408 261 14 19 407 21 409 8.50e-34 131
Msa0589210 AT5G15900.2 26.716 408 261 14 19 407 40 428 1.11e-33 131
Msa0589210 AT4G11090.1 26.902 368 232 16 59 407 76 425 1.65e-33 130
Msa0589210 AT4G23790.1 27.838 370 228 16 59 407 76 427 3.56e-33 129
Msa0589210 AT2G31110.1 32.759 232 131 7 174 405 6 212 2.55e-31 119
Msa0589210 AT3G28150.1 25.485 412 269 14 13 407 20 410 9.61e-30 119
Msa0589210 AT5G64470.4 28.626 262 163 11 53 299 46 298 1.04e-21 95.5
Msa0589210 AT5G64470.1 28.626 262 163 11 53 299 46 298 1.18e-21 95.5

Find 108 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAATCTGCATAAGATTT+TGG 0.172517 4_2:+11797080 None:intergenic
AGTAGTGTTACACACCAATT+TGG 0.225456 4_2:-11799726 Msa0589210:CDS
AGTGATTCTGATTCCCAAAT+TGG 0.231314 4_2:+11799712 None:intergenic
TTGAATGCAAATGGCAATTA+AGG 0.251462 4_2:-11799759 Msa0589210:exon
TATCAAATGTTTGTCATCTA+TGG 0.258736 4_2:+11796997 None:intergenic
GATATTTGCTCTTCTGTTAG+AGG 0.262790 4_2:+11797107 None:intergenic
CCGTCCTATCTGCCACCTTA+TGG 0.266201 4_2:+11798296 None:intergenic
CATTGCTTCCTATTTATTGA+TGG 0.274273 4_2:+11797134 None:intergenic
GGGTCTTGTTACGATTAATA+TGG 0.277488 4_2:+11797561 None:intergenic
TCTGCCACCTTATGGTTTAC+TGG 0.295188 4_2:+11798304 None:intergenic
AAGGCCATCCATCAATAAAT+AGG 0.314371 4_2:-11797142 Msa0589210:CDS
ATGCAACCATCGAGTTCTAT+TGG 0.320185 4_2:-11798360 Msa0589210:CDS
AATTTGATTCTACAAGTAAT+GGG 0.332243 4_2:+11798335 None:intergenic
TCCTTCTTGTGTTAGATATA+TGG 0.335216 4_2:+11799643 None:intergenic
GAGGCTTCCACCTCCAATTC+TGG 0.343204 4_2:+11799447 None:intergenic
TCCCTGGTGTGCCGGATACT+TGG 0.349590 4_2:-11797046 Msa0589210:CDS
ACAAGAGGCTTGTGTTTGTT+GGG 0.354831 4_2:-11798844 Msa0589210:CDS
TAAGTTCATGTCTGATCAAT+TGG 0.361245 4_2:-11799504 Msa0589210:CDS
ATGAAATGGCCTTGAGGACT+TGG 0.367437 4_2:-11797601 Msa0589210:CDS
CCCTAATGGAGTATACAAAA+AGG 0.372808 4_2:-11797642 Msa0589210:CDS
CTTATGCAGATTGCATTCAT+TGG 0.381074 4_2:-11797073 Msa0589210:CDS
TGGTGTGTAACACTACTATT+TGG 0.394186 4_2:+11799732 None:intergenic
CAGAGGACAATGGGTTTCAA+TGG 0.399093 4_2:-11798810 Msa0589210:CDS
TTGCATGGATTTGAGACTTA+GGG 0.400745 4_2:+11798763 None:intergenic
GAAGAGGGATATAGTGGAAA+TGG 0.403660 4_2:-11797275 Msa0589210:CDS
AACAAGAGGCTTGTGTTTGT+TGG 0.403969 4_2:-11798845 Msa0589210:CDS
GAATTTGATTCTACAAGTAA+TGG 0.406884 4_2:+11798334 None:intergenic
CAATTGGCTTGTGAGAAGTT+TGG 0.411007 4_2:-11799488 Msa0589210:CDS
AGGATCTTAGCTACCAGAAT+TGG 0.416193 4_2:-11799460 Msa0589210:CDS
CCTTGAGGACTTGGTCAGAT+TGG 0.419862 4_2:-11797592 Msa0589210:CDS
TTGTCATCTATGGAAAATAT+AGG 0.423330 4_2:+11797007 None:intergenic
CAAGTGGTAGAAAATGTTCT+AGG 0.431915 4_2:-11797233 Msa0589210:CDS
ATTAAAGAAGAGGGATATAG+TGG 0.432155 4_2:-11797281 Msa0589210:CDS
TGCAACCATCGAGTTCTATT+GGG 0.434606 4_2:-11798359 Msa0589210:CDS
GCTTCCTATTTATTGATGGA+TGG 0.437140 4_2:+11797138 None:intergenic
TAATTTCAGGGCTCATGAAT+GGG 0.444735 4_2:-11797345 Msa0589210:intron
TTCACTCAACAGAGGACAAT+GGG 0.446487 4_2:-11798819 Msa0589210:CDS
TTGTCTTCAACACATTCCTT+TGG 0.448621 4_2:-11798219 Msa0589210:CDS
ATCAATAAATAGGAAGCAAT+GGG 0.457806 4_2:-11797132 Msa0589210:CDS
ATACTTAGCATGTTTCTCAA+TGG 0.461652 4_2:+11798261 None:intergenic
TTCCAAGTATCCGGCACACC+AGG 0.465893 4_2:+11797044 None:intergenic
GGGTCATTTGGAAACCCTAA+TGG 0.467150 4_2:-11797656 Msa0589210:CDS
TGCATTCATTGGTGTCTCCC+TGG 0.467577 4_2:-11797062 Msa0589210:CDS
ACCATTGGCAATGGTTTGCA+TGG 0.470878 4_2:+11798748 None:intergenic
GTAGTGTTACACACCAATTT+GGG 0.474579 4_2:-11799725 Msa0589210:CDS
AGAAGCTCATTCCAAGTATC+CGG 0.475107 4_2:+11797035 None:intergenic
TTTGCATGGATTTGAGACTT+AGG 0.475132 4_2:+11798762 None:intergenic
TTGAGAAACATGCTAAGTAT+TGG 0.480376 4_2:-11798258 Msa0589210:CDS
TCTTCAACACATTCCTTTGG+TGG 0.480477 4_2:-11798216 Msa0589210:CDS
AGAGATCAAATTAAAGAAGA+GGG 0.483913 4_2:-11797290 Msa0589210:CDS
ACACATTCCTTTGGTGGAGA+AGG 0.487193 4_2:-11798210 Msa0589210:CDS
ATAATTTCAGGGCTCATGAA+TGG 0.487252 4_2:-11797346 Msa0589210:intron
TCATGAATGGGGAGGAGCAA+AGG 0.487502 4_2:-11797333 Msa0589210:CDS
GTGACTTATTCGATGGTAAG+TGG 0.487950 4_2:-11799571 Msa0589210:CDS
ATGCCACAACATTGCTTGAA+AGG 0.488238 4_2:-11798874 Msa0589210:CDS
TTATCAGAGTACAGAAAAGA+AGG 0.495371 4_2:-11797161 Msa0589210:CDS
ATCTTAGCTACCAGAATTGG+AGG 0.500091 4_2:-11799457 Msa0589210:CDS
CATGAATGGGGAGGAGCAAA+GGG 0.500571 4_2:-11797332 Msa0589210:CDS
TTTGGCCTTGAAAATGTTGA+GGG 0.501664 4_2:+11798724 None:intergenic
GAGGACTTGGTCAGATTGGT+TGG 0.501914 4_2:-11797588 Msa0589210:CDS
GAAAATGTTGAGGGAACCAT+TGG 0.502111 4_2:+11798733 None:intergenic
CATTGTTGTTCTTTGTAGAG+TGG 0.508085 4_2:+11799527 None:intergenic
CATCAATAAATAGGAAGCAA+TGG 0.508880 4_2:-11797133 Msa0589210:CDS
AAGAGATCAAATTAAAGAAG+AGG 0.510723 4_2:-11797291 Msa0589210:CDS
AATGGTTAGAGTCTATGAAA+TGG 0.510756 4_2:-11797615 Msa0589210:CDS
TTGCTTTCCTTCTCCACCAA+AGG 0.511894 4_2:+11798203 None:intergenic
CAAGAGGCTTGTGTTTGTTG+GGG 0.515415 4_2:-11798843 Msa0589210:CDS
CTTTGGCCTTGAAAATGTTG+AGG 0.517150 4_2:+11798723 None:intergenic
TTGGTGTCTCCCTGGTGTGC+CGG 0.525281 4_2:-11797054 Msa0589210:CDS
GTGGTTTATAATACCTTGGT+AGG 0.527159 4_2:+11799414 None:intergenic
TAAACCATAAGGTGGCAGAT+AGG 0.527182 4_2:-11798300 Msa0589210:CDS
AGTAAGGTAAACAAGTATCA+TGG 0.533812 4_2:+11796794 None:intergenic
CTAGGAGATTTGAAAACAAG+AGG 0.536954 4_2:-11797215 Msa0589210:CDS
AGATGATCCAGTAAACCATA+AGG 0.539645 4_2:-11798311 Msa0589210:CDS
GGCTTGTGAGAAGTTTGGAA+GGG 0.546607 4_2:-11799483 Msa0589210:CDS
GTTGAGGGAACCATTGGCAA+TGG 0.550716 4_2:+11798739 None:intergenic
TAGCCTTTCAAGCAATGTTG+TGG 0.553731 4_2:+11798871 None:intergenic
GCCATATATCTAACACAAGA+AGG 0.556284 4_2:-11799644 Msa0589210:CDS
CTTGATGTTGACTGAGGTGA+GGG 0.559073 4_2:-11796912 Msa0589210:three_prime_UTR
CAACATTGCTTGAAAGGCTA+AGG 0.559276 4_2:-11798868 Msa0589210:CDS
TCAAAATGTGACTTATTCGA+TGG 0.564211 4_2:-11799578 Msa0589210:CDS
TTCACATACCTTTGGTGAGT+AGG 0.571938 4_2:+11797515 None:intergenic
TGGCTTGTGAGAAGTTTGGA+AGG 0.575467 4_2:-11799484 Msa0589210:CDS
CCAATCTGACCAAGTCCTCA+AGG 0.575479 4_2:+11797592 None:intergenic
TGACTTATTCGATGGTAAGT+GGG 0.583755 4_2:-11799570 Msa0589210:CDS
TTGTGAGAAGTTTGGAAGGG+AGG 0.590066 4_2:-11799480 Msa0589210:CDS
TTGAAAGGCTAAGGAACAAG+AGG 0.590198 4_2:-11798859 Msa0589210:CDS
TCTTGATGTTGACTGAGGTG+AGG 0.592402 4_2:-11796913 Msa0589210:three_prime_UTR
CTCATCAATGTGACCTACCA+AGG 0.596342 4_2:-11799427 Msa0589210:intron
TTAGCTACCAGAATTGGAGG+TGG 0.598246 4_2:-11799454 Msa0589210:CDS
CCATAAGGTGGCAGATAGGA+CGG 0.601582 4_2:-11798296 Msa0589210:CDS
TGCATGGATTTGAGACTTAG+GGG 0.614048 4_2:+11798764 None:intergenic
TGTTCCTAAAATGATGCAAG+TGG 0.616326 4_2:-11797249 Msa0589210:CDS
TCCATGCAAACCATTGCCAA+TGG 0.622962 4_2:-11798749 Msa0589210:CDS
GAGTCTATGAAATGGCCTTG+AGG 0.624297 4_2:-11797607 Msa0589210:CDS
ATTCACTCAACAGAGGACAA+TGG 0.631990 4_2:-11798820 Msa0589210:CDS
CTATGTCACCTACTCACCAA+AGG 0.632176 4_2:-11797523 Msa0589210:intron
ATTTGATTCTACAAGTAATG+GGG 0.634322 4_2:+11798336 None:intergenic
AATTTCAGGGCTCATGAATG+GGG 0.634606 4_2:-11797344 Msa0589210:intron
CTTGGTAGGTCACATTGATG+AGG 0.636464 4_2:+11799428 None:intergenic
TTCAGGGCTCATGAATGGGG+AGG 0.654405 4_2:-11797341 Msa0589210:intron
TGGGGCCCAATAGAACTCGA+TGG 0.666596 4_2:+11798354 None:intergenic
TAACACAAGAAGGAGGACAA+TGG 0.671835 4_2:-11799634 Msa0589210:CDS
TCCAAGTATCCGGCACACCA+GGG 0.673081 4_2:+11797045 None:intergenic
TGATCCAGTAAACCATAAGG+TGG 0.673124 4_2:-11798308 Msa0589210:CDS
GTTGGGGATTCACTCAACAG+AGG 0.678403 4_2:-11798827 Msa0589210:CDS
GGGGAATTGAAGATTCAACA+AGG 0.704401 4_2:+11798783 None:intergenic
ATATATCTAACACAAGAAGG+AGG 0.717732 4_2:-11799641 Msa0589210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCTATAATTTATTATATTT+AGG + chr4_2:11799130-11799149 None:intergenic 10.0%
!!! AAATTTTTGAAATGAGAATA+TGG - chr4_2:11797576-11797595 Msa0589210:CDS 15.0%
!!! ACTTTGTTTATGTTAATATA+AGG - chr4_2:11797718-11797737 Msa0589210:intron 15.0%
!!! AAATATTTTAAAATTCGAGC+CGG - chr4_2:11797348-11797367 Msa0589210:intron 20.0%
!!! TTAGTCATAAAACATTTTGT+AGG + chr4_2:11798134-11798153 None:intergenic 20.0%
!!! TTAGTCATAAAACATTTTGT+AGG + chr4_2:11798134-11798153 None:intergenic 20.0%
!! AATTTGATTCTACAAGTAAT+GGG + chr4_2:11798287-11798306 None:intergenic 20.0%
!!! AAACTCAATCTATAATGTTT+TGG + chr4_2:11798604-11798623 None:intergenic 20.0%
!!! TTGTTGATAGACAATTTTTA+AGG + chr4_2:11798815-11798834 None:intergenic 20.0%
!! TATTACAACACTATCATATA+TGG + chr4_2:11798855-11798874 None:intergenic 20.0%
!! CATAGAAACAAAAAACAATT+GGG + chr4_2:11799081-11799100 None:intergenic 20.0%
!! ACATAGAAACAAAAAACAAT+TGG + chr4_2:11799082-11799101 None:intergenic 20.0%
!! ACCTAAGATAAAATAATTTC+AGG - chr4_2:11799261-11799280 Msa0589210:intron 20.0%
!! CCTAAGATAAAATAATTTCA+GGG - chr4_2:11799262-11799281 Msa0589210:intron 20.0%
! CTTAAAAAAGGATATTGCTA+TGG - chr4_2:11796816-11796835 Msa0589210:three_prime_UTR 25.0%
! CAAAAAAAGTTGAATGCAAA+TGG - chr4_2:11796851-11796870 Msa0589210:three_prime_UTR 25.0%
! TTGAACCGTATAATTAAATC+CGG + chr4_2:11797370-11797389 None:intergenic 25.0%
!! GGAAATCAATTTAGGTTATA+TGG + chr4_2:11797551-11797570 None:intergenic 25.0%
!! CTCATTTCAAAAATTTGCTT+GGG + chr4_2:11797572-11797591 None:intergenic 25.0%
!! TCTCATTTCAAAAATTTGCT+TGG + chr4_2:11797573-11797592 None:intergenic 25.0%
! GAATTGACACATTTAATCAA+AGG - chr4_2:11798230-11798249 Msa0589210:CDS 25.0%
! ATTTGATTCTACAAGTAATG+GGG + chr4_2:11798286-11798305 None:intergenic 25.0%
! GAATTTGATTCTACAAGTAA+TGG + chr4_2:11798288-11798307 None:intergenic 25.0%
! ACTAAAAGAGTTGTTGATAT+AGG + chr4_2:11798485-11798504 None:intergenic 25.0%
! ATTGTTCGAAACTTTAATGA+GGG + chr4_2:11798747-11798766 None:intergenic 25.0%
! AATTGTTCGAAACTTTAATG+AGG + chr4_2:11798748-11798767 None:intergenic 25.0%
!!! TTGATAGACAATTTTTAAGG+TGG + chr4_2:11798812-11798831 None:intergenic 25.0%
! GATAGGAATCATTCTATATT+TGG + chr4_2:11798884-11798903 None:intergenic 25.0%
!!! CCCTGAAATTATTTTATCTT+AGG + chr4_2:11799265-11799284 None:intergenic 25.0%
! AAGAGATCAAATTAAAGAAG+AGG - chr4_2:11799328-11799347 Msa0589210:intron 25.0%
! AGAGATCAAATTAAAGAAGA+GGG - chr4_2:11799329-11799348 Msa0589210:intron 25.0%
! ATCAATAAATAGGAAGCAAT+GGG - chr4_2:11799487-11799506 Msa0589210:CDS 25.0%
! TTGTCATCTATGGAAAATAT+AGG + chr4_2:11799615-11799634 None:intergenic 25.0%
! TATCAAATGTTTGTCATCTA+TGG + chr4_2:11799625-11799644 None:intergenic 25.0%
TTGAATGCAAATGGCAATTA+AGG - chr4_2:11796860-11796879 Msa0589210:three_prime_UTR 30.0%
TCCTTCTTGTGTTAGATATA+TGG + chr4_2:11796979-11796998 None:intergenic 30.0%
ATATATCTAACACAAGAAGG+AGG - chr4_2:11796978-11796997 Msa0589210:three_prime_UTR 30.0%
!!! TTTTGACATTGATTCAGAAG+TGG + chr4_2:11797027-11797046 None:intergenic 30.0%
TCAAAATGTGACTTATTCGA+TGG - chr4_2:11797041-11797060 Msa0589210:CDS 30.0%
TAAGTTCATGTCTGATCAAT+TGG - chr4_2:11797115-11797134 Msa0589210:CDS 30.0%
TGATGTGGTTTATAATACCT+TGG + chr4_2:11797212-11797231 None:intergenic 30.0%
TTATCTGATCAACATTGATG+TGG + chr4_2:11797227-11797246 None:intergenic 30.0%
!! CAACTTGTTAAACCAAGAAA+CGG - chr4_2:11797387-11797406 Msa0589210:intron 30.0%
! TATGGTGCAGTTTGTTTAAT+TGG + chr4_2:11797533-11797552 None:intergenic 30.0%
TTTGCTTGGGAAATCAATTT+AGG + chr4_2:11797559-11797578 None:intergenic 30.0%
ATACTTAGCATGTTTCTCAA+TGG + chr4_2:11798361-11798380 None:intergenic 30.0%
TTGAGAAACATGCTAAGTAT+TGG - chr4_2:11798361-11798380 Msa0589210:CDS 30.0%
ACCTGAGACAATAATATGAT+TGG - chr4_2:11798562-11798581 Msa0589210:intron 30.0%
ACCAATCATATTATTGTCTC+AGG + chr4_2:11798566-11798585 None:intergenic 30.0%
ACAACACTATCATATATGGT+GGG + chr4_2:11798851-11798870 None:intergenic 30.0%
TACAACACTATCATATATGG+TGG + chr4_2:11798852-11798871 None:intergenic 30.0%
! AAAATCAAGTTGCTAACTAG+TGG + chr4_2:11798913-11798932 None:intergenic 30.0%
! CCTTTTTGTATACTCCATTA+GGG + chr4_2:11798980-11798999 None:intergenic 30.0%
! ACCTTTTTGTATACTCCATT+AGG + chr4_2:11798981-11799000 None:intergenic 30.0%
AGTATACAAAAAGGTAGCAA+TGG - chr4_2:11798986-11799005 Msa0589210:intron 30.0%
AATGGTTAGAGTCTATGAAA+TGG - chr4_2:11799004-11799023 Msa0589210:intron 30.0%
! TATTTAGGTTCACATACCTT+TGG + chr4_2:11799115-11799134 None:intergenic 30.0%
ATTAAAGAAGAGGGATATAG+TGG - chr4_2:11799338-11799357 Msa0589210:intron 30.0%
TTATCAGAGTACAGAAAAGA+AGG - chr4_2:11799458-11799477 Msa0589210:CDS 30.0%
CATTGCTTCCTATTTATTGA+TGG + chr4_2:11799488-11799507 None:intergenic 30.0%
CATCAATAAATAGGAAGCAA+TGG - chr4_2:11799486-11799505 Msa0589210:CDS 30.0%
! ATGCAATCTGCATAAGATTT+TGG + chr4_2:11799542-11799561 None:intergenic 30.0%
!!! TGCATGTTTTTTGAGGATTA+GGG + chr4_2:11799760-11799779 None:intergenic 30.0%
!!! ATGCATGTTTTTTGAGGATT+AGG + chr4_2:11799761-11799780 None:intergenic 30.0%
!!! TAGCATATGCATGTTTTTTG+AGG + chr4_2:11799767-11799786 None:intergenic 30.0%
TGGTGTGTAACACTACTATT+TGG + chr4_2:11796890-11796909 None:intergenic 35.0%
AGTAGTGTTACACACCAATT+TGG - chr4_2:11796893-11796912 Msa0589210:three_prime_UTR 35.0%
GTAGTGTTACACACCAATTT+GGG - chr4_2:11796894-11796913 Msa0589210:three_prime_UTR 35.0%
AGTGATTCTGATTCCCAAAT+TGG + chr4_2:11796910-11796929 None:intergenic 35.0%
GCCATATATCTAACACAAGA+AGG - chr4_2:11796975-11796994 Msa0589210:three_prime_UTR 35.0%
TGACTTATTCGATGGTAAGT+GGG - chr4_2:11797049-11797068 Msa0589210:CDS 35.0%
! CATTGTTGTTCTTTGTAGAG+TGG + chr4_2:11797095-11797114 None:intergenic 35.0%
GTGGTTTATAATACCTTGGT+AGG + chr4_2:11797208-11797227 None:intergenic 35.0%
AGTCAAATGATCTCGACAAT+TGG + chr4_2:11797323-11797342 None:intergenic 35.0%
TCGAGCCGGATTTAATTATA+CGG - chr4_2:11797362-11797381 Msa0589210:intron 35.0%
TTAGCAAATTGACCGTTTCT+TGG + chr4_2:11797402-11797421 None:intergenic 35.0%
!! GAAACGGTCAATTTGCTAAT+TGG - chr4_2:11797403-11797422 Msa0589210:intron 35.0%
GATCTTCATCATACGTAGTA+TGG - chr4_2:11797429-11797448 Msa0589210:intron 35.0%
! TTGCATGGATTTGAGACTTA+GGG + chr4_2:11797859-11797878 None:intergenic 35.0%
! TTTGCATGGATTTGAGACTT+AGG + chr4_2:11797860-11797879 None:intergenic 35.0%
!! TTTGGCCTTGAAAATGTTGA+GGG + chr4_2:11797898-11797917 None:intergenic 35.0%
TAGAGACTAAGTAGAAGAGA+GGG + chr4_2:11798057-11798076 None:intergenic 35.0%
AGATGATCCAGTAAACCATA+AGG - chr4_2:11798308-11798327 Msa0589210:CDS 35.0%
TTGTCTTCAACACATTCCTT+TGG - chr4_2:11798400-11798419 Msa0589210:intron 35.0%
ACTTTAATGAGGGTTGACAT+CGG + chr4_2:11798737-11798756 None:intergenic 35.0%
!!! ATTTTTAAGGTGGCATGATG+TGG + chr4_2:11798802-11798821 None:intergenic 35.0%
!! TATATGGTGGGTGGAAATAT+TGG + chr4_2:11798839-11798858 None:intergenic 35.0%
!!! GTGACATTTTAACTACAAGC+AGG - chr4_2:11798937-11798956 Msa0589210:intron 35.0%
!!! ACATTTTAACTACAAGCAGG+TGG - chr4_2:11798940-11798959 Msa0589210:intron 35.0%
!!! CATTTTAACTACAAGCAGGT+GGG - chr4_2:11798941-11798960 Msa0589210:intron 35.0%
!!! ATTTTAACTACAAGCAGGTG+GGG - chr4_2:11798942-11798961 Msa0589210:intron 35.0%
CCCTAATGGAGTATACAAAA+AGG - chr4_2:11798977-11798996 Msa0589210:intron 35.0%
!! GGGTCTTGTTACGATTAATA+TGG + chr4_2:11799061-11799080 None:intergenic 35.0%
ATAATTTCAGGGCTCATGAA+TGG - chr4_2:11799273-11799292 Msa0589210:intron 35.0%
TAATTTCAGGGCTCATGAAT+GGG - chr4_2:11799274-11799293 Msa0589210:intron 35.0%
TGTTCCTAAAATGATGCAAG+TGG - chr4_2:11799370-11799389 Msa0589210:intron 35.0%
! TCTACCACTTGCATCATTTT+AGG + chr4_2:11799377-11799396 None:intergenic 35.0%
CAAGTGGTAGAAAATGTTCT+AGG - chr4_2:11799386-11799405 Msa0589210:intron 35.0%
CTAGGAGATTTGAAAACAAG+AGG - chr4_2:11799404-11799423 Msa0589210:intron 35.0%
AAGGCCATCCATCAATAAAT+AGG - chr4_2:11799477-11799496 Msa0589210:CDS 35.0%
GCTTCCTATTTATTGATGGA+TGG + chr4_2:11799484-11799503 None:intergenic 35.0%
GATATTTGCTCTTCTGTTAG+AGG + chr4_2:11799515-11799534 None:intergenic 35.0%
CTTATGCAGATTGCATTCAT+TGG - chr4_2:11799546-11799565 Msa0589210:CDS 35.0%
!! TTTTCTCTTGATGTTGACTG+AGG - chr4_2:11799701-11799720 Msa0589210:CDS 35.0%
TAACACAAGAAGGAGGACAA+TGG - chr4_2:11796985-11797004 Msa0589210:three_prime_UTR 40.0%
GTGACTTATTCGATGGTAAG+TGG - chr4_2:11797048-11797067 Msa0589210:CDS 40.0%
!! CAATTGGCTTGTGAGAAGTT+TGG - chr4_2:11797131-11797150 Msa0589210:CDS 40.0%
AGGATCTTAGCTACCAGAAT+TGG - chr4_2:11797159-11797178 Msa0589210:CDS 40.0%
ATCTTAGCTACCAGAATTGG+AGG - chr4_2:11797162-11797181 Msa0589210:CDS 40.0%
ATGCCACAACATTGCTTGAA+AGG - chr4_2:11797745-11797764 Msa0589210:intron 40.0%
TAGCCTTTCAAGCAATGTTG+TGG + chr4_2:11797751-11797770 None:intergenic 40.0%
CAACATTGCTTGAAAGGCTA+AGG - chr4_2:11797751-11797770 Msa0589210:intron 40.0%
TTGAAAGGCTAAGGAACAAG+AGG - chr4_2:11797760-11797779 Msa0589210:intron 40.0%
AACAAGAGGCTTGTGTTTGT+TGG - chr4_2:11797774-11797793 Msa0589210:intron 40.0%
ACAAGAGGCTTGTGTTTGTT+GGG - chr4_2:11797775-11797794 Msa0589210:intron 40.0%
ATTCACTCAACAGAGGACAA+TGG - chr4_2:11797799-11797818 Msa0589210:intron 40.0%
TTCACTCAACAGAGGACAAT+GGG - chr4_2:11797800-11797819 Msa0589210:intron 40.0%
GGGGAATTGAAGATTCAACA+AGG + chr4_2:11797839-11797858 None:intergenic 40.0%
! TGCATGGATTTGAGACTTAG+GGG + chr4_2:11797858-11797877 None:intergenic 40.0%
GAAAATGTTGAGGGAACCAT+TGG + chr4_2:11797889-11797908 None:intergenic 40.0%
! TGGTTCCCTCAACATTTTCA+AGG - chr4_2:11797890-11797909 Msa0589210:intron 40.0%
!! CTTTGGCCTTGAAAATGTTG+AGG + chr4_2:11797899-11797918 None:intergenic 40.0%
AGAGAGGGTGATATAGTTGA+TGG + chr4_2:11798042-11798061 None:intergenic 40.0%
GTAGAGACTAAGTAGAAGAG+AGG + chr4_2:11798058-11798077 None:intergenic 40.0%
ATGCAACCATCGAGTTCTAT+TGG - chr4_2:11798259-11798278 Msa0589210:CDS 40.0%
TGCAACCATCGAGTTCTATT+GGG - chr4_2:11798260-11798279 Msa0589210:CDS 40.0%
TGATCCAGTAAACCATAAGG+TGG - chr4_2:11798311-11798330 Msa0589210:CDS 40.0%
TAAACCATAAGGTGGCAGAT+AGG - chr4_2:11798319-11798338 Msa0589210:CDS 40.0%
TCTTCAACACATTCCTTTGG+TGG - chr4_2:11798403-11798422 Msa0589210:intron 40.0%
! ACACTATCATATATGGTGGG+TGG + chr4_2:11798848-11798867 None:intergenic 40.0%
CTAACTAGTGGAGTTAGGAT+AGG + chr4_2:11798901-11798920 None:intergenic 40.0%
AGTTGCTAACTAGTGGAGTT+AGG + chr4_2:11798906-11798925 None:intergenic 40.0%
!! TTTTAACTACAAGCAGGTGG+GGG - chr4_2:11798943-11798962 Msa0589210:intron 40.0%
TTCACATACCTTTGGTGAGT+AGG + chr4_2:11799107-11799126 None:intergenic 40.0%
AATTTCAGGGCTCATGAATG+GGG - chr4_2:11799275-11799294 Msa0589210:intron 40.0%
! GAAGAGGGATATAGTGGAAA+TGG - chr4_2:11799344-11799363 Msa0589210:intron 40.0%
AGAAGCTCATTCCAAGTATC+CGG + chr4_2:11799587-11799606 None:intergenic 40.0%
! TGGCTTGTGAGAAGTTTGGA+AGG - chr4_2:11797135-11797154 Msa0589210:CDS 45.0%
GGCTTGTGAGAAGTTTGGAA+GGG - chr4_2:11797136-11797155 Msa0589210:CDS 45.0%
TTGTGAGAAGTTTGGAAGGG+AGG - chr4_2:11797139-11797158 Msa0589210:CDS 45.0%
TTAGCTACCAGAATTGGAGG+TGG - chr4_2:11797165-11797184 Msa0589210:CDS 45.0%
CTTGGTAGGTCACATTGATG+AGG + chr4_2:11797194-11797213 None:intergenic 45.0%
CTCATCAATGTGACCTACCA+AGG - chr4_2:11797192-11797211 Msa0589210:CDS 45.0%
! CAAGAGGCTTGTGTTTGTTG+GGG - chr4_2:11797776-11797795 Msa0589210:intron 45.0%
! CAGAGGACAATGGGTTTCAA+TGG - chr4_2:11797809-11797828 Msa0589210:intron 45.0%
TCCATGCAAACCATTGCCAA+TGG - chr4_2:11797870-11797889 Msa0589210:intron 45.0%
! ACCATTGGCAATGGTTTGCA+TGG + chr4_2:11797874-11797893 None:intergenic 45.0%
!! TTTTCAAGGCCAAAGTGCGT+AGG - chr4_2:11797904-11797923 Msa0589210:intron 45.0%
TCCTATAGACCTACGCACTT+TGG + chr4_2:11797916-11797935 None:intergenic 45.0%
TCTGCCACCTTATGGTTTAC+TGG + chr4_2:11798318-11798337 None:intergenic 45.0%
ACACATTCCTTTGGTGGAGA+AGG - chr4_2:11798409-11798428 Msa0589210:intron 45.0%
TTGCTTTCCTTCTCCACCAA+AGG + chr4_2:11798419-11798438 None:intergenic 45.0%
GGGTCATTTGGAAACCCTAA+TGG - chr4_2:11798963-11798982 Msa0589210:intron 45.0%
! GAGTCTATGAAATGGCCTTG+AGG - chr4_2:11799012-11799031 Msa0589210:intron 45.0%
! ATGAAATGGCCTTGAGGACT+TGG - chr4_2:11799018-11799037 Msa0589210:intron 45.0%
CTATGTCACCTACTCACCAA+AGG - chr4_2:11799096-11799115 Msa0589210:intron 45.0%
! TCTTGATGTTGACTGAGGTG+AGG - chr4_2:11799706-11799725 Msa0589210:CDS 45.0%
! CTTGATGTTGACTGAGGTGA+GGG - chr4_2:11799707-11799726 Msa0589210:CDS 45.0%
!!! TTTTTTTAAATAATTAAGTT+TGG - chr4_2:11797660-11797679 Msa0589210:CDS 5.0%
GTTGGGGATTCACTCAACAG+AGG - chr4_2:11797792-11797811 Msa0589210:intron 50.0%
GTTGAGGGAACCATTGGCAA+TGG + chr4_2:11797883-11797902 None:intergenic 50.0%
GCCAAAGTGCGTAGGTCTAT+AGG - chr4_2:11797912-11797931 Msa0589210:intron 50.0%
CCATAAGGTGGCAGATAGGA+CGG - chr4_2:11798323-11798342 Msa0589210:CDS 50.0%
CCAATCTGACCAAGTCCTCA+AGG + chr4_2:11799030-11799049 None:intergenic 50.0%
! CCTTGAGGACTTGGTCAGAT+TGG - chr4_2:11799027-11799046 Msa0589210:intron 50.0%
! GAGGACTTGGTCAGATTGGT+TGG - chr4_2:11799031-11799050 Msa0589210:intron 50.0%
TCATGAATGGGGAGGAGCAA+AGG - chr4_2:11799286-11799305 Msa0589210:intron 50.0%
CATGAATGGGGAGGAGCAAA+GGG - chr4_2:11799287-11799306 Msa0589210:intron 50.0%
! TGCATTCATTGGTGTCTCCC+TGG - chr4_2:11799557-11799576 Msa0589210:CDS 50.0%
GAGGCTTCCACCTCCAATTC+TGG + chr4_2:11797175-11797194 None:intergenic 55.0%
TGGGGCCCAATAGAACTCGA+TGG + chr4_2:11798268-11798287 None:intergenic 55.0%
CCGTCCTATCTGCCACCTTA+TGG + chr4_2:11798326-11798345 None:intergenic 55.0%
ACAAGCAGGTGGGGGTCATT+TGG - chr4_2:11798951-11798970 Msa0589210:intron 55.0%
TTCAGGGCTCATGAATGGGG+AGG - chr4_2:11799278-11799297 Msa0589210:intron 55.0%
TCCAAGTATCCGGCACACCA+GGG + chr4_2:11799577-11799596 None:intergenic 55.0%
TTCCAAGTATCCGGCACACC+AGG + chr4_2:11799578-11799597 None:intergenic 55.0%
! TTGGTGTCTCCCTGGTGTGC+CGG - chr4_2:11799565-11799584 Msa0589210:CDS 60.0%
TCCCTGGTGTGCCGGATACT+TGG - chr4_2:11799573-11799592 Msa0589210:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 11796805 11799836 11796805 ID=Msa0589210;Name=Msa0589210
chr4_2 mRNA 11796805 11799836 11796805 ID=Msa0589210-mRNA-1;Parent=Msa0589210;Name=Msa0589210-mRNA-1;_AED=0.24;_eAED=0.24;_QI=59|1|1|1|1|1|5|205|410
chr4_2 exon 11796805 11797358 11796805 ID=Msa0589210-mRNA-1:exon:3510;Parent=Msa0589210-mRNA-1
chr4_2 exon 11797524 11797682 11797524 ID=Msa0589210-mRNA-1:exon:3509;Parent=Msa0589210-mRNA-1
chr4_2 exon 11798193 11798389 11798193 ID=Msa0589210-mRNA-1:exon:3508;Parent=Msa0589210-mRNA-1
chr4_2 exon 11798724 11798901 11798724 ID=Msa0589210-mRNA-1:exon:3507;Parent=Msa0589210-mRNA-1
chr4_2 exon 11799428 11799836 11799428 ID=Msa0589210-mRNA-1:exon:3506;Parent=Msa0589210-mRNA-1
chr4_2 five_prime_UTR 11799778 11799836 11799778 ID=Msa0589210-mRNA-1:five_prime_utr;Parent=Msa0589210-mRNA-1
chr4_2 CDS 11799428 11799777 11799428 ID=Msa0589210-mRNA-1:cds;Parent=Msa0589210-mRNA-1
chr4_2 CDS 11798724 11798901 11798724 ID=Msa0589210-mRNA-1:cds;Parent=Msa0589210-mRNA-1
chr4_2 CDS 11798193 11798389 11798193 ID=Msa0589210-mRNA-1:cds;Parent=Msa0589210-mRNA-1
chr4_2 CDS 11797524 11797682 11797524 ID=Msa0589210-mRNA-1:cds;Parent=Msa0589210-mRNA-1
chr4_2 CDS 11797010 11797358 11797010 ID=Msa0589210-mRNA-1:cds;Parent=Msa0589210-mRNA-1
chr4_2 three_prime_UTR 11796805 11797009 11796805 ID=Msa0589210-mRNA-1:three_prime_utr;Parent=Msa0589210-mRNA-1
Gene Sequence

>Msa0589210

ATGCAAATGGCAATTAAGGAACACCAAATAGTAGTGTTACACACCAATTTGGGAATCAGAATCACTTTTCATTCTCTTGTAGCATTTTTAACAACTATTCTAGTTGTCACTGCCATATATCTAACACAAGAAGGAGGACAATGGTCTCTTGAAAAGACTACCACTTCTGAATCAATGTCAAAATGTGACTTATTCGATGGTAAGTGGGTTTTTGACAATGAATCTTATCCACTCTACAAAGAACAACAATGTAAGTTCATGTCTGATCAATTGGCTTGTGAGAAGTTTGGAAGGGAGGATCTTAGCTACCAGAATTGGAGGTGGAAGCCTCATCAATGTGACCTACCAAGGTTCAATGCCACAACATTGCTTGAAAGGCTAAGGAACAAGAGGCTTGTGTTTGTTGGGGATTCACTCAACAGAGGACAATGGGTTTCAATGGTTTGCCTTGTTGAATCTTCAATTCCCCTAAGTCTCAAATCCATGCAAACCATTGCCAATGGTTCCCTCAACATTTTCAAGGCCAAAGAATACAATGCAACCATCGAGTTCTATTGGGCCCCATTACTTGTAGAATCAAATTCAGATGATCCAGTAAACCATAAGGTGGCAGATAGGACGGTGAGAGTTCAAGCCATTGAGAAACATGCTAAGTATTGGACTGATGCTGATATTATTGTCTTCAACACATTCCTTTGGTGGAGAAGGAAAGCAATGAATGTTTTGTGGGGGTCATTTGGAAACCCTAATGGAGTATACAAAAAGGTAGCAATGGTTAGAGTCTATGAAATGGCCTTGAGGACTTGGTCAGATTGGTTGGAAGTCCATATTAATCGTAACAAGACCCAATTGTTTTTTGTTTCTATGTCACCTACTCACCAAAGGGCTCATGAATGGGGAGGAGCAAAGGGTGAAAATTGTTACAAAGAAAGAGATCAAATTAAAGAAGAGGGATATAGTGGAAATGGTTCTGTTCCTAAAATGATGCAAGTGGTAGAAAATGTTCTAGGAGATTTGAAAACAAGAGGTTTGAATGTTGAATTGCTTAACATAACACAGTTATCAGAGTACAGAAAAGAAGGCCATCCATCAATAAATAGGAAGCAATGGGAGCCTCTAACAGAAGAGCAAATATCAAATCCAAAATCTTATGCAGATTGCATTCATTGGTGTCTCCCTGGTGTGCCGGATACTTGGAATGAGCTTCTTTATGCCTATATTTTCCATAGATGA
Protein sequence

>Msa0589210

MQMAIKEHQIVVLHTNLGIRITFHSLVAFLTTILVVTAIYLTQEGGQWSLEKTTTSESMSKCDLFDGKWVFDNESYPLYKEQQCKFMSDQLACEKFGREDLSYQNWRWKPHQCDLPRFNATTLLERLRNKRLVFVGDSLNRGQWVSMVCLVESSIPLSLKSMQTIANGSLNIFKAKEYNATIEFYWAPLLVESNSDDPVNHKVADRTVRVQAIEKHAKYWTDADIIVFNTFLWWRRKAMNVLWGSFGNPNGVYKKVAMVRVYEMALRTWSDWLEVHINRNKTQLFFVSMSPTHQRAHEWGGAKGENCYKERDQIKEEGYSGNGSVPKMMQVVENVLGDLKTRGLNVELLNITQLSEYRKEGHPSINRKQWEPLTEEQISNPKSYADCIHWCLPGVPDTWNELLYAYIFHR*