Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174320 | XP_003591419.1 | 95.455 | 66 | 3 | 0 | 14 | 79 | 125 | 190 | 4.69e-38 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174320 | G7IDR9 | 95.455 | 66 | 3 | 0 | 14 | 79 | 125 | 190 | 2.24e-38 | 136 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022550 | Msa0174320 | 0.803110 | 4.076834e-49 | -8.615850e-47 |
| Msa0025330 | Msa0174320 | 0.808465 | 3.056016e-50 | -8.615850e-47 |
| Msa0026910 | Msa0174320 | 0.805522 | 1.281921e-49 | -8.615850e-47 |
| Msa0028170 | Msa0174320 | 0.947093 | 1.311817e-105 | -8.615850e-47 |
| Msa0072900 | Msa0174320 | 0.816418 | 5.588130e-52 | -8.615850e-47 |
| Msa0081710 | Msa0174320 | 0.903765 | 2.473585e-79 | -8.615850e-47 |
| Msa0084380 | Msa0174320 | 0.818236 | 2.178331e-52 | -8.615850e-47 |
| Msa0109900 | Msa0174320 | 0.804152 | 2.477541e-49 | -8.615850e-47 |
| Msa0121090 | Msa0174320 | 0.803850 | 2.862500e-49 | -8.615850e-47 |
| Msa0128220 | Msa0174320 | 0.953278 | 3.897495e-111 | -8.615850e-47 |
| Msa0136100 | Msa0174320 | 0.804035 | 2.620093e-49 | -8.615850e-47 |
| Msa0152400 | Msa0174320 | 0.802619 | 5.148937e-49 | -8.615850e-47 |
| Msa0160130 | Msa0174320 | 0.822355 | 2.476825e-53 | -8.615850e-47 |
| Msa0170570 | Msa0174320 | 0.803238 | 3.835018e-49 | -8.615850e-47 |
| Msa0174320 | Msa0211150 | 0.817148 | 3.831368e-52 | -8.615850e-47 |
| Msa0174320 | Msa0212040 | 0.818618 | 1.784710e-52 | -8.615850e-47 |
| Msa0174320 | Msa0212990 | 0.801663 | 8.097313e-49 | -8.615850e-47 |
| Msa0174320 | Msa0213520 | 0.815317 | 9.834141e-52 | -8.615850e-47 |
| Msa0174320 | Msa0218810 | 0.823239 | 1.541776e-53 | -8.615850e-47 |
| Msa0174320 | Msa0220580 | 0.810704 | 1.009989e-50 | -8.615850e-47 |
| Msa0174320 | Msa0222620 | 0.801235 | 9.908107e-49 | -8.615850e-47 |
| Msa0174320 | Msa0252540 | 0.817918 | 2.570036e-52 | -8.615850e-47 |
| Msa0174320 | Msa0254790 | 0.819742 | 9.900832e-53 | -8.615850e-47 |
| Msa0174320 | Msa0258310 | 0.808823 | 2.562278e-50 | -8.615850e-47 |
| Msa0174320 | Msa0259430 | 0.800429 | 1.447156e-48 | -8.615850e-47 |
| Msa0174320 | Msa0264780 | 0.804826 | 1.792582e-49 | -8.615850e-47 |
| Msa0174320 | Msa0267920 | 0.816801 | 4.586461e-52 | -8.615850e-47 |
| Msa0174320 | Msa0277450 | 0.803966 | 2.708165e-49 | -8.615850e-47 |
| Msa0174320 | Msa0283450 | 0.801181 | 1.016441e-48 | -8.615850e-47 |
| Msa0174320 | Msa0291400 | 0.814307 | 1.646573e-51 | -8.615850e-47 |
| Msa0174320 | Msa0305610 | 0.805375 | 1.376368e-49 | -8.615850e-47 |
| Msa0174320 | Msa0317730 | 0.807898 | 4.035961e-50 | -8.615850e-47 |
| Msa0174320 | Msa0326520 | 0.813312 | 2.727818e-51 | -8.615850e-47 |
| Msa0174320 | Msa0329400 | 0.834015 | 3.826595e-56 | -8.615850e-47 |
| Msa0174320 | Msa0332000 | 0.804866 | 1.758322e-49 | -8.615850e-47 |
| Msa0174320 | Msa0333920 | 0.800230 | 1.588934e-48 | -8.615850e-47 |
| Msa0174320 | Msa0333930 | 0.808322 | 3.279124e-50 | -8.615850e-47 |
| Msa0174320 | Msa0342010 | 0.800854 | 1.185325e-48 | -8.615850e-47 |
| Msa0174320 | Msa0345970 | 0.802565 | 5.280962e-49 | -8.615850e-47 |
| Msa0174320 | Msa0358890 | 0.831699 | 1.439424e-55 | -8.615850e-47 |
| Msa0174320 | Msa0376630 | 0.802872 | 4.565027e-49 | -8.615850e-47 |
| Msa0174320 | Msa0425170 | 0.802001 | 6.900833e-49 | -8.615850e-47 |
| Msa0174320 | Msa0437560 | 0.807240 | 5.568537e-50 | -8.615850e-47 |
| Msa0174320 | Msa0452710 | 0.835293 | 1.825356e-56 | -8.615850e-47 |
| Msa0174320 | Msa0471670 | 0.824112 | 9.627540e-54 | -8.615850e-47 |
| Msa0174320 | Msa0479170 | 0.821618 | 3.669008e-53 | -8.615850e-47 |
| Msa0174320 | Msa0484780 | 0.840338 | 9.232284e-58 | -8.615850e-47 |
| Msa0174320 | Msa0488560 | 0.803804 | 2.926370e-49 | -8.615850e-47 |
| Msa0174320 | Msa0538910 | 0.810583 | 1.072382e-50 | -8.615850e-47 |
| Msa0174320 | Msa0548620 | 0.821670 | 3.567842e-53 | -8.615850e-47 |
| Msa0174320 | Msa0566310 | 0.804000 | 2.665053e-49 | -8.615850e-47 |
| Msa0174320 | Msa0574390 | 0.818818 | 1.607526e-52 | -8.615850e-47 |
| Msa0174320 | Msa0576680 | 0.809424 | 1.905299e-50 | -8.615850e-47 |
| Msa0174320 | Msa0589210 | 0.801509 | 8.705456e-49 | -8.615850e-47 |
| Msa0174320 | Msa0604510 | 0.804011 | 2.650548e-49 | -8.615850e-47 |
| Msa0174320 | Msa0624470 | 0.813251 | 2.813118e-51 | -8.615850e-47 |
| Msa0174320 | Msa0626090 | 0.828381 | 9.277456e-55 | -8.615850e-47 |
| Msa0174320 | Msa0662340 | 0.811396 | 7.148004e-51 | -8.615850e-47 |
| Msa0174320 | Msa0667050 | 0.800330 | 1.516109e-48 | -8.615850e-47 |
| Msa0174320 | Msa0684500 | 0.820363 | 7.135335e-53 | -8.615850e-47 |
| Msa0174320 | Msa0688480 | 0.810655 | 1.034537e-50 | -8.615850e-47 |
| Msa0174320 | Msa0692060 | 0.804964 | 1.677631e-49 | -8.615850e-47 |
| Msa0174320 | Msa0693380 | 0.810967 | 8.856605e-51 | -8.615850e-47 |
| Msa0174320 | Msa0697030 | 0.821251 | 4.458707e-53 | -8.615850e-47 |
| Msa0174320 | Msa0717890 | 0.807247 | 5.548622e-50 | -8.615850e-47 |
| Msa0174320 | Msa0721280 | 0.821018 | 5.045978e-53 | -8.615850e-47 |
| Msa0174320 | Msa0740510 | 0.800990 | 1.111975e-48 | -8.615850e-47 |
| Msa0174320 | Msa0810220 | 0.802508 | 5.426872e-49 | -8.615850e-47 |
| Msa0174320 | Msa0816710 | 0.810705 | 1.009476e-50 | -8.615850e-47 |
| Msa0174320 | Msa0820770 | 0.802762 | 4.809726e-49 | -8.615850e-47 |
| Msa0174320 | Msa0820850 | 0.800471 | 1.418926e-48 | -8.615850e-47 |
| Msa0174320 | Msa0824660 | 0.814347 | 1.613259e-51 | -8.615850e-47 |
| Msa0174320 | Msa0828850 | 0.812966 | 3.249710e-51 | -8.615850e-47 |
| Msa0174320 | Msa0843780 | -0.804039 | 2.615310e-49 | -8.615850e-47 |
| Msa0174320 | Msa0861090 | 0.804496 | 2.100700e-49 | -8.615850e-47 |
| Msa0174320 | Msa0861130 | 0.800007 | 1.763756e-48 | -8.615850e-47 |
| Msa0174320 | Msa0863930 | 0.802575 | 5.256303e-49 | -8.615850e-47 |
| Msa0174320 | Msa0866520 | 0.802029 | 6.809996e-49 | -8.615850e-47 |
| Msa0174320 | Msa0878510 | 0.803787 | 2.951332e-49 | -8.615850e-47 |
| Msa0174320 | Msa0898750 | 0.800892 | 1.164514e-48 | -8.615850e-47 |
| Msa0174320 | Msa0928130 | 0.807267 | 5.494385e-50 | -8.615850e-47 |
| Msa0174320 | Msa0934890 | 0.802185 | 6.325876e-49 | -8.615850e-47 |
| Msa0174320 | Msa0938220 | 0.803460 | 3.449728e-49 | -8.615850e-47 |
| Msa0174320 | Msa0962840 | 0.822306 | 2.542102e-53 | -8.615850e-47 |
| Msa0174320 | Msa0964310 | 0.815587 | 8.566262e-52 | -8.615850e-47 |
| Msa0174320 | Msa0980880 | 0.803920 | 2.768433e-49 | -8.615850e-47 |
| Msa0174320 | Msa0989220 | 0.815399 | 9.432074e-52 | -8.615850e-47 |
| Msa0174320 | Msa1002850 | 0.821834 | 3.271119e-53 | -8.615850e-47 |
| Msa0174320 | Msa1004840 | 0.808549 | 2.932102e-50 | -8.615850e-47 |
| Msa0174320 | Msa1024740 | 0.838076 | 3.564022e-57 | -8.615850e-47 |
| Msa0174320 | Msa1031930 | 0.822148 | 2.766361e-53 | -8.615850e-47 |
| Msa0174320 | Msa1035960 | 0.812769 | 3.589455e-51 | -8.615850e-47 |
| Msa0174320 | Msa1045200 | 0.816154 | 6.399422e-52 | -8.615850e-47 |
| Msa0174320 | Msa1063500 | 0.811622 | 6.384760e-51 | -8.615850e-47 |
| Msa0174320 | Msa1078170 | 0.800325 | 1.519735e-48 | -8.615850e-47 |
| Msa0174320 | Msa1082500 | 0.822053 | 2.909479e-53 | -8.615850e-47 |
| Msa0174320 | Msa1087980 | 0.817983 | 2.484526e-52 | -8.615850e-47 |
| Msa0174320 | Msa1093840 | 0.806146 | 9.475923e-50 | -8.615850e-47 |
| Msa0174320 | Msa1108790 | 0.825560 | 4.385596e-54 | -8.615850e-47 |
| Msa0174320 | Msa1113800 | 0.817448 | 3.280687e-52 | -8.615850e-47 |
| Msa0174320 | Msa1123380 | 0.812555 | 3.996119e-51 | -8.615850e-47 |
| Msa0174320 | Msa1139890 | 0.801293 | 9.639161e-49 | -8.615850e-47 |
| Msa0174320 | Msa1152510 | 0.823831 | 1.120826e-53 | -8.615850e-47 |
| Msa0174320 | Msa1152990 | 0.811225 | 7.789154e-51 | -8.615850e-47 |
| Msa0174320 | Msa1193290 | 0.833035 | 6.721124e-56 | -8.615850e-47 |
| Msa0174320 | Msa1197590 | 0.805339 | 1.400035e-49 | -8.615850e-47 |
| Msa0174320 | Msa1205370 | 0.817753 | 2.800374e-52 | -8.615850e-47 |
| Msa0174320 | Msa1205960 | 0.809623 | 1.726826e-50 | -8.615850e-47 |
| Msa0174320 | Msa1208220 | 0.801620 | 8.261669e-49 | -8.615850e-47 |
| Msa0174320 | Msa1221050 | 0.838272 | 3.173823e-57 | -8.615850e-47 |
| Msa0174320 | Msa1250290 | 0.807402 | 5.144670e-50 | -8.615850e-47 |
| Msa0174320 | Msa1258170 | 0.801764 | 7.717551e-49 | -8.615850e-47 |
| Msa0174320 | Msa1276660 | 0.807687 | 4.474420e-50 | -8.615850e-47 |
| Msa0174320 | Msa1303250 | 0.803072 | 4.151284e-49 | -8.615850e-47 |
| Msa0174320 | Msa1340710 | 0.821583 | 3.738120e-53 | -8.615850e-47 |
| Msa0174320 | Msa1353470 | 0.848073 | 7.732189e-60 | -8.615850e-47 |
| Msa0174320 | Msa1353980 | 0.836696 | 8.043621e-57 | -8.615850e-47 |
| Msa0174320 | Msa1357890 | 0.818874 | 1.560995e-52 | -8.615850e-47 |
| Msa0174320 | Msa1368430 | 0.819144 | 1.355131e-52 | -8.615850e-47 |
| Msa0174320 | Msa1382400 | 0.806434 | 8.242013e-50 | -8.615850e-47 |
| Msa0174320 | Msa1383230 | 0.805339 | 1.400292e-49 | -8.615850e-47 |
| Msa0174320 | Msa1386710 | 0.802864 | 4.581617e-49 | -8.615850e-47 |
| Msa0174320 | Msa1389400 | 0.803181 | 3.940368e-49 | -8.615850e-47 |
| Msa0174320 | Msa1398090 | 0.801339 | 9.435308e-49 | -8.615850e-47 |
| Msa0174320 | Msa1409870 | 0.804322 | 2.284138e-49 | -8.615850e-47 |
| Msa0174320 | Msa1410210 | 0.823573 | 1.288099e-53 | -8.615850e-47 |
| Msa0174320 | Msa1411020 | 0.822974 | 1.777750e-53 | -8.615850e-47 |
| Msa0174320 | Msa1420490 | 0.818829 | 1.597950e-52 | -8.615850e-47 |
| Msa0174320 | Msa1423390 | 0.822462 | 2.338441e-53 | -8.615850e-47 |
| Msa0174320 | Msa1424290 | 0.821860 | 3.224545e-53 | -8.615850e-47 |
| Msa0174320 | Msa1424450 | 0.809043 | 2.299359e-50 | -8.615850e-47 |
| Msa0174320 | Msa1434350 | 0.816135 | 6.462525e-52 | -8.615850e-47 |
| Msa0174320 | Msa1439320 | 0.822102 | 2.835287e-53 | -8.615850e-47 |
| Msa0174320 | Msa1440370 | 0.817448 | 3.280625e-52 | -8.615850e-47 |
| Msa0174320 | Msa1440810 | 0.811352 | 7.307637e-51 | -8.615850e-47 |
| Msa0174320 | Msa1451160 | 0.819468 | 1.143414e-52 | -8.615850e-47 |
| Msa0174320 | Msa1463900 | 0.820578 | 6.368803e-53 | -8.615850e-47 |
| Msa0174320 | Msa1466540 | 0.816230 | 6.154112e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174320 | MtrunA17_Chr1g0194831 | 95.455 | 66 | 3 | 0 | 14 | 79 | 110 | 175 | 5.34e-42 | 135 |
| Msa0174320 | MtrunA17_Chr7g0269881 | 62.264 | 53 | 18 | 1 | 28 | 78 | 137 | 189 | 1.02e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAATGTGATTGTGAATT+TGG | 0.218381 | 1_4:+59936429 | None:intergenic |
| GGGATTAGAACATTGATTTA+TGG | 0.229629 | 1_4:-59935558 | Msa0174320:CDS |
| TATTTGAATAGGCAGATTTC+AGG | 0.248523 | 1_4:-59935919 | Msa0174320:CDS |
| TGATTTGGGTTGCGTTATAT+TGG | 0.301838 | 1_4:+59936484 | None:intergenic |
| GATTTGGGTTGCGTTATATT+GGG | 0.309638 | 1_4:+59936485 | None:intergenic |
| GCCTAGCTTGGATACTATTA+AGG | 0.311308 | 1_4:-59935884 | Msa0174320:CDS |
| ATCTGCCTATTCAAATAATC+TGG | 0.371640 | 1_4:+59935925 | None:intergenic |
| GGAAGAGGTGATGGAGGAGA+AGG | 0.379095 | 1_4:-59935998 | Msa0174320:CDS |
| GGAGAATTTGCCGGACATAT+TGG | 0.397303 | 1_4:-59935956 | Msa0174320:CDS |
| GGTTGCGTTATATTGGGGTT+GGG | 0.407877 | 1_4:+59936491 | None:intergenic |
| ACTAGTTATTATCTTTAAGA+TGG | 0.414570 | 1_4:-59936406 | Msa0174320:exon |
| TTTCGTCCTTCAGATTCAAC+AGG | 0.424376 | 1_4:-59936369 | Msa0174320:intron |
| GGAGGCCAGATTATTTGAAT+AGG | 0.439315 | 1_4:-59935930 | Msa0174320:CDS |
| GGGTTGCGTTATATTGGGGT+TGG | 0.450106 | 1_4:+59936490 | None:intergenic |
| CTAGTTATTATCTTTAAGAT+GGG | 0.465652 | 1_4:-59936405 | Msa0174320:exon |
| GAAGAGGTGATGGAGGAGAA+GGG | 0.490391 | 1_4:-59935997 | Msa0174320:CDS |
| TTTAATTTAGTGAAATCAGA+AGG | 0.505259 | 1_4:-59935579 | Msa0174320:intron |
| GAAAGGGTGGAAGCCTAGCT+TGG | 0.506451 | 1_4:-59935896 | Msa0174320:CDS |
| TCGGAGGAAGGAAGAGGTGA+TGG | 0.513945 | 1_4:-59936007 | Msa0174320:CDS |
| ATTTGAATAGGCAGATTTCA+GGG | 0.521145 | 1_4:-59935918 | Msa0174320:CDS |
| AATAGGCAGATTTCAGGGAA+AGG | 0.530769 | 1_4:-59935913 | Msa0174320:CDS |
| GGCCTCCCTTCCAATATGTC+CGG | 0.533242 | 1_4:+59935946 | None:intergenic |
| ATAGGCAGATTTCAGGGAAA+GGG | 0.549284 | 1_4:-59935912 | Msa0174320:CDS |
| GGAGCCTCGGAGGAAGGAAG+AGG | 0.553960 | 1_4:-59936013 | Msa0174320:CDS |
| ACTTTACCTGTTGAATCTGA+AGG | 0.560942 | 1_4:+59936363 | None:intergenic |
| AATTTGCCGGACATATTGGA+AGG | 0.563693 | 1_4:-59935952 | Msa0174320:CDS |
| ATTTGGGTTGCGTTATATTG+GGG | 0.567607 | 1_4:+59936486 | None:intergenic |
| TCCTTAATAGTATCCAAGCT+AGG | 0.569966 | 1_4:+59935883 | None:intergenic |
| AATAGTGGAGCCTCGGAGGA+AGG | 0.571841 | 1_4:-59936019 | Msa0174320:intron |
| ACAGTGAAATAGTGGAGCCT+CGG | 0.582711 | 1_4:-59936026 | Msa0174320:intron |
| GAGGAAGGAAGAGGTGATGG+AGG | 0.589938 | 1_4:-59936004 | Msa0174320:CDS |
| GGCAGATTTCAGGGAAAGGG+TGG | 0.595138 | 1_4:-59935909 | Msa0174320:CDS |
| TTAATTTAGTGAAATCAGAA+GGG | 0.607405 | 1_4:-59935578 | Msa0174320:intron |
| TGCCGGACATATTGGAAGGG+AGG | 0.607569 | 1_4:-59935948 | Msa0174320:CDS |
| GTGAAATAGTGGAGCCTCGG+AGG | 0.619098 | 1_4:-59936023 | Msa0174320:intron |
| ACGTGCATACTTGGGATGCA+TGG | 0.625338 | 1_4:+59935526 | None:intergenic |
| ATTTGCCGGACATATTGGAA+GGG | 0.657578 | 1_4:-59935951 | Msa0174320:CDS |
| ATCACCTCTTCCTTCCTCCG+AGG | 0.665878 | 1_4:+59936009 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAAATAAAGTGTGATTT+GGG | + | chr1_4:59935598-59935617 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAGTGTGATT+TGG | + | chr1_4:59935599-59935618 | None:intergenic | 20.0% |
| !!! | ACTAGTTATTATCTTTAAGA+TGG | - | chr1_4:59935659-59935678 | Msa0174320:intron | 20.0% |
| !!! | CTAGTTATTATCTTTAAGAT+GGG | - | chr1_4:59935660-59935679 | Msa0174320:intron | 20.0% |
| !!! | TGGTATAGTTATTTTAGTTT+TGG | - | chr1_4:59936257-59936276 | Msa0174320:intron | 20.0% |
| !! | GTTATAGTAGTTAAATATTG+TGG | - | chr1_4:59936279-59936298 | Msa0174320:intron | 20.0% |
| !!! | TTAAATATTGTGGATTAATG+TGG | - | chr1_4:59936289-59936308 | Msa0174320:intron | 20.0% |
| !!! | TTTAATTTAGTGAAATCAGA+AGG | - | chr1_4:59936486-59936505 | Msa0174320:five_prime_UTR | 20.0% |
| !! | TTAATTTAGTGAAATCAGAA+GGG | - | chr1_4:59936487-59936506 | Msa0174320:five_prime_UTR | 20.0% |
| !! | CTAAAAATAAAGTGTGATTT+GGG | + | chr1_4:59935598-59935617 | None:intergenic | 20.0% |
| !! | ACTAAAAATAAAGTGTGATT+TGG | + | chr1_4:59935599-59935618 | None:intergenic | 20.0% |
| !!! | ACTAGTTATTATCTTTAAGA+TGG | - | chr1_4:59935659-59935678 | Msa0174320:intron | 20.0% |
| !!! | CTAGTTATTATCTTTAAGAT+GGG | - | chr1_4:59935660-59935679 | Msa0174320:intron | 20.0% |
| !!! | TGGTATAGTTATTTTAGTTT+TGG | - | chr1_4:59936257-59936276 | Msa0174320:intron | 20.0% |
| !! | GTTATAGTAGTTAAATATTG+TGG | - | chr1_4:59936279-59936298 | Msa0174320:intron | 20.0% |
| !!! | TTAAATATTGTGGATTAATG+TGG | - | chr1_4:59936289-59936308 | Msa0174320:intron | 20.0% |
| !!! | TTTAATTTAGTGAAATCAGA+AGG | - | chr1_4:59936486-59936505 | Msa0174320:five_prime_UTR | 20.0% |
| !! | TTAATTTAGTGAAATCAGAA+GGG | - | chr1_4:59936487-59936506 | Msa0174320:five_prime_UTR | 20.0% |
| ! | AATTAACCATCAACAAAACT+CGG | + | chr1_4:59935950-59935969 | None:intergenic | 25.0% |
| ! | TGACATAAATTACTAAACCA+AGG | + | chr1_4:59936017-59936036 | None:intergenic | 25.0% |
| ! | TTGAGAAAAAACATACTCAT+TGG | - | chr1_4:59936213-59936232 | Msa0174320:intron | 25.0% |
| ! | AGACATTATGTTAATGAGTA+TGG | - | chr1_4:59936327-59936346 | Msa0174320:intron | 25.0% |
| ! | TTTAATTGCATGTGTATCTT+AGG | - | chr1_4:59936356-59936375 | Msa0174320:intron | 25.0% |
| ! | AATTAACCATCAACAAAACT+CGG | + | chr1_4:59935950-59935969 | None:intergenic | 25.0% |
| ! | TGACATAAATTACTAAACCA+AGG | + | chr1_4:59936017-59936036 | None:intergenic | 25.0% |
| ! | TTGAGAAAAAACATACTCAT+TGG | - | chr1_4:59936213-59936232 | Msa0174320:intron | 25.0% |
| ! | AGACATTATGTTAATGAGTA+TGG | - | chr1_4:59936327-59936346 | Msa0174320:intron | 25.0% |
| ! | TTTAATTGCATGTGTATCTT+AGG | - | chr1_4:59936356-59936375 | Msa0174320:intron | 25.0% |
| TGTGAATGTGATTGTGAATT+TGG | + | chr1_4:59935639-59935658 | None:intergenic | 30.0% | |
| GGTAAAGTTGTATTCTTAGA+TGG | - | chr1_4:59935717-59935736 | Msa0174320:intron | 30.0% | |
| ATTTGATGAAGCAATAACAG+TGG | - | chr1_4:59935752-59935771 | Msa0174320:intron | 30.0% | |
| !!! | AACTCAACTACTACTTTTTG+TGG | + | chr1_4:59935798-59935817 | None:intergenic | 30.0% |
| GTTCTTATAAGTTTCTTCCT+TGG | - | chr1_4:59935997-59936016 | Msa0174320:CDS | 30.0% | |
| ATGTCATAACAGTGAAATAG+TGG | - | chr1_4:59936031-59936050 | Msa0174320:intron | 30.0% | |
| ATCTGCCTATTCAAATAATC+TGG | + | chr1_4:59936143-59936162 | None:intergenic | 30.0% | |
| TATTTGAATAGGCAGATTTC+AGG | - | chr1_4:59936146-59936165 | Msa0174320:intron | 30.0% | |
| ATTTGAATAGGCAGATTTCA+GGG | - | chr1_4:59936147-59936166 | Msa0174320:intron | 30.0% | |
| !! | TGTTTCTCAAGAGTTTTTAG+TGG | - | chr1_4:59936237-59936256 | Msa0174320:intron | 30.0% |
| ACAAAGAACAAACTGAAGAA+AGG | + | chr1_4:59936461-59936480 | None:intergenic | 30.0% | |
| !! | GGGATTAGAACATTGATTTA+TGG | - | chr1_4:59936507-59936526 | Msa0174320:five_prime_UTR | 30.0% |
| TGTGAATGTGATTGTGAATT+TGG | + | chr1_4:59935639-59935658 | None:intergenic | 30.0% | |
| GGTAAAGTTGTATTCTTAGA+TGG | - | chr1_4:59935717-59935736 | Msa0174320:intron | 30.0% | |
| ATTTGATGAAGCAATAACAG+TGG | - | chr1_4:59935752-59935771 | Msa0174320:intron | 30.0% | |
| !!! | AACTCAACTACTACTTTTTG+TGG | + | chr1_4:59935798-59935817 | None:intergenic | 30.0% |
| GTTCTTATAAGTTTCTTCCT+TGG | - | chr1_4:59935997-59936016 | Msa0174320:CDS | 30.0% | |
| ATGTCATAACAGTGAAATAG+TGG | - | chr1_4:59936031-59936050 | Msa0174320:intron | 30.0% | |
| ATCTGCCTATTCAAATAATC+TGG | + | chr1_4:59936143-59936162 | None:intergenic | 30.0% | |
| TATTTGAATAGGCAGATTTC+AGG | - | chr1_4:59936146-59936165 | Msa0174320:intron | 30.0% | |
| ATTTGAATAGGCAGATTTCA+GGG | - | chr1_4:59936147-59936166 | Msa0174320:intron | 30.0% | |
| !! | TGTTTCTCAAGAGTTTTTAG+TGG | - | chr1_4:59936237-59936256 | Msa0174320:intron | 30.0% |
| ACAAAGAACAAACTGAAGAA+AGG | + | chr1_4:59936461-59936480 | None:intergenic | 30.0% | |
| !! | GGGATTAGAACATTGATTTA+TGG | - | chr1_4:59936507-59936526 | Msa0174320:five_prime_UTR | 30.0% |
| !! | ATTTGGGTTGCGTTATATTG+GGG | + | chr1_4:59935582-59935601 | None:intergenic | 35.0% |
| !! | GATTTGGGTTGCGTTATATT+GGG | + | chr1_4:59935583-59935602 | None:intergenic | 35.0% |
| !! | TGATTTGGGTTGCGTTATAT+TGG | + | chr1_4:59935584-59935603 | None:intergenic | 35.0% |
| ACTTTACCTGTTGAATCTGA+AGG | + | chr1_4:59935705-59935724 | None:intergenic | 35.0% | |
| ATTCAGCTGTGAACCAAAAA+AGG | - | chr1_4:59935820-59935839 | Msa0174320:intron | 35.0% | |
| TCCTTAATAGTATCCAAGCT+AGG | + | chr1_4:59936185-59936204 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTATATGCAGAAA+AGG | + | chr1_4:59936400-59936419 | None:intergenic | 35.0% |
| !! | ATTTGGGTTGCGTTATATTG+GGG | + | chr1_4:59935582-59935601 | None:intergenic | 35.0% |
| !! | GATTTGGGTTGCGTTATATT+GGG | + | chr1_4:59935583-59935602 | None:intergenic | 35.0% |
| !! | TGATTTGGGTTGCGTTATAT+TGG | + | chr1_4:59935584-59935603 | None:intergenic | 35.0% |
| ACTTTACCTGTTGAATCTGA+AGG | + | chr1_4:59935705-59935724 | None:intergenic | 35.0% | |
| ATTCAGCTGTGAACCAAAAA+AGG | - | chr1_4:59935820-59935839 | Msa0174320:intron | 35.0% | |
| TCCTTAATAGTATCCAAGCT+AGG | + | chr1_4:59936185-59936204 | None:intergenic | 35.0% | |
| !! | GAAGTTGGTATATGCAGAAA+AGG | + | chr1_4:59936400-59936419 | None:intergenic | 35.0% |
| TTTCGTCCTTCAGATTCAAC+AGG | - | chr1_4:59935696-59935715 | Msa0174320:intron | 40.0% | |
| AACAGTGGCAGAGTTAATGA+TGG | - | chr1_4:59935767-59935786 | Msa0174320:intron | 40.0% | |
| !!! | GTAATGGTGTTGGCCTTTTT+TGG | + | chr1_4:59935836-59935855 | None:intergenic | 40.0% |
| !! | CGATTTTTCGGAGAATTTGC+CGG | - | chr1_4:59936100-59936119 | Msa0174320:intron | 40.0% |
| AATTTGCCGGACATATTGGA+AGG | - | chr1_4:59936113-59936132 | Msa0174320:intron | 40.0% | |
| ATTTGCCGGACATATTGGAA+GGG | - | chr1_4:59936114-59936133 | Msa0174320:intron | 40.0% | |
| GGAGGCCAGATTATTTGAAT+AGG | - | chr1_4:59936135-59936154 | Msa0174320:intron | 40.0% | |
| AATAGGCAGATTTCAGGGAA+AGG | - | chr1_4:59936152-59936171 | Msa0174320:intron | 40.0% | |
| ATAGGCAGATTTCAGGGAAA+GGG | - | chr1_4:59936153-59936172 | Msa0174320:intron | 40.0% | |
| GCCTAGCTTGGATACTATTA+AGG | - | chr1_4:59936181-59936200 | Msa0174320:intron | 40.0% | |
| TTGAGCAGCATTACAGAAGT+TGG | + | chr1_4:59936415-59936434 | None:intergenic | 40.0% | |
| TTTCGTCCTTCAGATTCAAC+AGG | - | chr1_4:59935696-59935715 | Msa0174320:intron | 40.0% | |
| AACAGTGGCAGAGTTAATGA+TGG | - | chr1_4:59935767-59935786 | Msa0174320:intron | 40.0% | |
| !!! | GTAATGGTGTTGGCCTTTTT+TGG | + | chr1_4:59935836-59935855 | None:intergenic | 40.0% |
| !! | CGATTTTTCGGAGAATTTGC+CGG | - | chr1_4:59936100-59936119 | Msa0174320:intron | 40.0% |
| AATTTGCCGGACATATTGGA+AGG | - | chr1_4:59936113-59936132 | Msa0174320:intron | 40.0% | |
| ATTTGCCGGACATATTGGAA+GGG | - | chr1_4:59936114-59936133 | Msa0174320:intron | 40.0% | |
| GGAGGCCAGATTATTTGAAT+AGG | - | chr1_4:59936135-59936154 | Msa0174320:intron | 40.0% | |
| AATAGGCAGATTTCAGGGAA+AGG | - | chr1_4:59936152-59936171 | Msa0174320:intron | 40.0% | |
| ATAGGCAGATTTCAGGGAAA+GGG | - | chr1_4:59936153-59936172 | Msa0174320:intron | 40.0% | |
| GCCTAGCTTGGATACTATTA+AGG | - | chr1_4:59936181-59936200 | Msa0174320:intron | 40.0% | |
| TTGAGCAGCATTACAGAAGT+TGG | + | chr1_4:59936415-59936434 | None:intergenic | 40.0% | |
| GGTTGCGTTATATTGGGGTT+GGG | + | chr1_4:59935577-59935596 | None:intergenic | 45.0% | |
| ! | TTGTCAGCAGGTAATGGTGT+TGG | + | chr1_4:59935846-59935865 | None:intergenic | 45.0% |
| AGCTTCTTGTCAGCAGGTAA+TGG | + | chr1_4:59935852-59935871 | None:intergenic | 45.0% | |
| ! | ATCTCTAGCTTCTTGTCAGC+AGG | + | chr1_4:59935858-59935877 | None:intergenic | 45.0% |
| TTGATGCTTCCAGTGAAGCA+AGG | - | chr1_4:59935891-59935910 | Msa0174320:CDS | 45.0% | |
| TGATGCTTCCAGTGAAGCAA+GGG | - | chr1_4:59935892-59935911 | Msa0174320:CDS | 45.0% | |
| !! | GGGAAGCCTATTGGTTTAAG+CGG | - | chr1_4:59935912-59935931 | Msa0174320:CDS | 45.0% |
| TCTTCGCCGCTTAAACCAAT+AGG | + | chr1_4:59935921-59935940 | None:intergenic | 45.0% | |
| !!! | AACTCGCCGAGTTTTGTTGA+TGG | - | chr1_4:59935941-59935960 | Msa0174320:CDS | 45.0% |
| ! | ACAGTGAAATAGTGGAGCCT+CGG | - | chr1_4:59936039-59936058 | Msa0174320:intron | 45.0% |
| ! | GGGAGAGAGACACGATTTTT+CGG | - | chr1_4:59936088-59936107 | Msa0174320:intron | 45.0% |
| GGAGAATTTGCCGGACATAT+TGG | - | chr1_4:59936109-59936128 | Msa0174320:intron | 45.0% | |
| GGTTGCGTTATATTGGGGTT+GGG | + | chr1_4:59935577-59935596 | None:intergenic | 45.0% | |
| ! | TTGTCAGCAGGTAATGGTGT+TGG | + | chr1_4:59935846-59935865 | None:intergenic | 45.0% |
| AGCTTCTTGTCAGCAGGTAA+TGG | + | chr1_4:59935852-59935871 | None:intergenic | 45.0% | |
| ! | ATCTCTAGCTTCTTGTCAGC+AGG | + | chr1_4:59935858-59935877 | None:intergenic | 45.0% |
| TTGATGCTTCCAGTGAAGCA+AGG | - | chr1_4:59935891-59935910 | Msa0174320:CDS | 45.0% | |
| TGATGCTTCCAGTGAAGCAA+GGG | - | chr1_4:59935892-59935911 | Msa0174320:CDS | 45.0% | |
| !! | GGGAAGCCTATTGGTTTAAG+CGG | - | chr1_4:59935912-59935931 | Msa0174320:CDS | 45.0% |
| TCTTCGCCGCTTAAACCAAT+AGG | + | chr1_4:59935921-59935940 | None:intergenic | 45.0% | |
| !!! | AACTCGCCGAGTTTTGTTGA+TGG | - | chr1_4:59935941-59935960 | Msa0174320:CDS | 45.0% |
| ! | ACAGTGAAATAGTGGAGCCT+CGG | - | chr1_4:59936039-59936058 | Msa0174320:intron | 45.0% |
| ! | GGGAGAGAGACACGATTTTT+CGG | - | chr1_4:59936088-59936107 | Msa0174320:intron | 45.0% |
| GGAGAATTTGCCGGACATAT+TGG | - | chr1_4:59936109-59936128 | Msa0174320:intron | 45.0% | |
| GGGTTGCGTTATATTGGGGT+TGG | + | chr1_4:59935578-59935597 | None:intergenic | 50.0% | |
| ATAGGCTTCCCTTGCTTCAC+TGG | + | chr1_4:59935903-59935922 | None:intergenic | 50.0% | |
| GTGAAGCAAGGGAAGCCTAT+TGG | - | chr1_4:59935903-59935922 | Msa0174320:CDS | 50.0% | |
| !! | GAAGAGGTGATGGAGGAGAA+GGG | - | chr1_4:59936068-59936087 | Msa0174320:intron | 50.0% |
| GGGTTGCGTTATATTGGGGT+TGG | + | chr1_4:59935578-59935597 | None:intergenic | 50.0% | |
| ATAGGCTTCCCTTGCTTCAC+TGG | + | chr1_4:59935903-59935922 | None:intergenic | 50.0% | |
| GTGAAGCAAGGGAAGCCTAT+TGG | - | chr1_4:59935903-59935922 | Msa0174320:CDS | 50.0% | |
| !! | GAAGAGGTGATGGAGGAGAA+GGG | - | chr1_4:59936068-59936087 | Msa0174320:intron | 50.0% |
| ! | GTGAAATAGTGGAGCCTCGG+AGG | - | chr1_4:59936042-59936061 | Msa0174320:intron | 55.0% |
| ! | AATAGTGGAGCCTCGGAGGA+AGG | - | chr1_4:59936046-59936065 | Msa0174320:intron | 55.0% |
| ATCACCTCTTCCTTCCTCCG+AGG | + | chr1_4:59936059-59936078 | None:intergenic | 55.0% | |
| TCGGAGGAAGGAAGAGGTGA+TGG | - | chr1_4:59936058-59936077 | Msa0174320:intron | 55.0% | |
| ! | GAGGAAGGAAGAGGTGATGG+AGG | - | chr1_4:59936061-59936080 | Msa0174320:intron | 55.0% |
| !! | GGAAGAGGTGATGGAGGAGA+AGG | - | chr1_4:59936067-59936086 | Msa0174320:intron | 55.0% |
| TGCCGGACATATTGGAAGGG+AGG | - | chr1_4:59936117-59936136 | Msa0174320:intron | 55.0% | |
| GGCCTCCCTTCCAATATGTC+CGG | + | chr1_4:59936122-59936141 | None:intergenic | 55.0% | |
| GGCAGATTTCAGGGAAAGGG+TGG | - | chr1_4:59936156-59936175 | Msa0174320:intron | 55.0% | |
| GAAAGGGTGGAAGCCTAGCT+TGG | - | chr1_4:59936169-59936188 | Msa0174320:intron | 55.0% | |
| ! | GTGAAATAGTGGAGCCTCGG+AGG | - | chr1_4:59936042-59936061 | Msa0174320:intron | 55.0% |
| ! | AATAGTGGAGCCTCGGAGGA+AGG | - | chr1_4:59936046-59936065 | Msa0174320:intron | 55.0% |
| ATCACCTCTTCCTTCCTCCG+AGG | + | chr1_4:59936059-59936078 | None:intergenic | 55.0% | |
| TCGGAGGAAGGAAGAGGTGA+TGG | - | chr1_4:59936058-59936077 | Msa0174320:intron | 55.0% | |
| ! | GAGGAAGGAAGAGGTGATGG+AGG | - | chr1_4:59936061-59936080 | Msa0174320:intron | 55.0% |
| !! | GGAAGAGGTGATGGAGGAGA+AGG | - | chr1_4:59936067-59936086 | Msa0174320:intron | 55.0% |
| TGCCGGACATATTGGAAGGG+AGG | - | chr1_4:59936117-59936136 | Msa0174320:intron | 55.0% | |
| GGCCTCCCTTCCAATATGTC+CGG | + | chr1_4:59936122-59936141 | None:intergenic | 55.0% | |
| GGCAGATTTCAGGGAAAGGG+TGG | - | chr1_4:59936156-59936175 | Msa0174320:intron | 55.0% | |
| GAAAGGGTGGAAGCCTAGCT+TGG | - | chr1_4:59936169-59936188 | Msa0174320:intron | 55.0% | |
| GGAGCCTCGGAGGAAGGAAG+AGG | - | chr1_4:59936052-59936071 | Msa0174320:intron | 65.0% | |
| GGAGCCTCGGAGGAAGGAAG+AGG | - | chr1_4:59936052-59936071 | Msa0174320:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 59935536 | 59936551 | 59935536 | ID=Msa0174320;Name=Msa0174320 |
| chr1_4 | mRNA | 59935536 | 59936551 | 59935536 | ID=Msa0174320-mRNA-1;Parent=Msa0174320;Name=Msa0174320-mRNA-1;_AED=0.31;_eAED=0.37;_QI=142|0|0.33|1|0|0|3|0|98 |
| chr1_4 | exon | 59935536 | 59935591 | 59935536 | ID=Msa0174320-mRNA-1:exon:18832;Parent=Msa0174320-mRNA-1 |
| chr1_4 | exon | 59935839 | 59936036 | 59935839 | ID=Msa0174320-mRNA-1:exon:18831;Parent=Msa0174320-mRNA-1 |
| chr1_4 | exon | 59936370 | 59936551 | 59936370 | ID=Msa0174320-mRNA-1:exon:18830;Parent=Msa0174320-mRNA-1 |
| chr1_4 | five_prime_UTR | 59936410 | 59936551 | 59936410 | ID=Msa0174320-mRNA-1:five_prime_utr;Parent=Msa0174320-mRNA-1 |
| chr1_4 | CDS | 59936370 | 59936409 | 59936370 | ID=Msa0174320-mRNA-1:cds;Parent=Msa0174320-mRNA-1 |
| chr1_4 | CDS | 59935839 | 59936036 | 59935839 | ID=Msa0174320-mRNA-1:cds;Parent=Msa0174320-mRNA-1 |
| chr1_4 | CDS | 59935536 | 59935591 | 59935536 | ID=Msa0174320-mRNA-1:cds;Parent=Msa0174320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
