AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589230 MtrunA17_Chr4g0005561 99.412 170 1 0 1 170 1 170 1.42e-123 345
Msa0589230 MtrunA17_Chr7g0243261 84.706 170 26 0 1 170 1 170 2.01e-104 296
Msa0589230 MtrunA17_Chr5g0418311 51.205 166 78 1 8 170 15 180 2.03e-59 182
Msa0589230 MtrunA17_Chr4g0061181 46.552 174 89 1 1 170 1 174 1.53e-55 172
Msa0589230 MtrunA17_Chr7g0269431 41.772 79 44 2 56 133 33 110 8.44e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589230 AT3G08890.1 77.059 170 39 0 1 170 1 170 2.14e-99 284
Msa0589230 AT3G08890.2 77.059 170 39 0 1 170 1 170 2.14e-99 284
Msa0589230 AT5G37070.1 78.235 170 37 0 1 170 1 170 2.55e-98 281
Msa0589230 AT5G01610.2 75.294 170 42 0 1 170 1 170 6.13e-96 275
Msa0589230 AT5G01610.1 75.294 170 42 0 1 170 1 170 6.13e-96 275
Msa0589230 AT2G03350.1 49.390 164 80 1 7 167 12 175 7.04e-53 166
Msa0589230 AT1G02816.1 25.217 115 83 2 57 168 35 149 1.23e-12 62.8
Msa0589230 AT4G02370.1 27.368 95 68 1 56 149 34 128 1.34e-11 60.1
Msa0589230 AT4G02360.1 29.358 109 74 3 51 157 25 132 1.68e-11 59.7

Find 59 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTCCTTGCTGGCTTTC+TGG 0.082636 4_2:-11818638 None:intergenic
CGTTTCTTCACCACTGTTAC+TGG 0.210400 4_2:+11822521 Msa0589230:CDS
CACCACTGTTACTGGTTATC+TGG 0.249379 4_2:+11822529 Msa0589230:CDS
TGAAGACAAAAGTTATTATC+TGG 0.261455 4_2:+11822582 Msa0589230:CDS
GCCATTACCAGAGTTGTTAA+AGG 0.295014 4_2:+11822370 Msa0589230:CDS
TGGTTGGTCAACAAAGTAAA+AGG 0.300821 4_2:+11819714 Msa0589230:CDS
AAGTAGTAAATATGTATTTC+AGG 0.304499 4_2:+11822830 Msa0589230:three_prime_UTR
CTTCGATCCCTCAGAGAAAA+TGG 0.322582 4_2:-11822618 None:intergenic
TACTTTGTTGACCAACCATT+TGG 0.339849 4_2:-11819709 None:intergenic
GGTACTGATCCTTGGACCTT+GGG 0.351627 4_2:+11822851 Msa0589230:three_prime_UTR
GACGGAATTAAGCTCCTTGC+TGG 0.370970 4_2:-11818646 None:intergenic
CCATACAAGAAGACCTAAAA+TGG 0.373813 4_2:-11822789 None:intergenic
ATTGTAGAAAGAAGGAGAAA+TGG 0.390997 4_2:+11818578 Msa0589230:exon
TCAACAAGGTTGGATCCTAT+TGG 0.402846 4_2:+11818610 Msa0589230:CDS
AGGTACTGATCCTTGGACCT+TGG 0.412100 4_2:+11822850 Msa0589230:three_prime_UTR
TTTAGGTCTTCTTGTATGGT+TGG 0.417986 4_2:+11822793 Msa0589230:three_prime_UTR
TCCTTTAACAACTCTGGTAA+TGG 0.418016 4_2:-11822371 None:intergenic
GGCTTTCTGGTTGAACCAAT+AGG 0.431914 4_2:-11818625 None:intergenic
GGTCTGCGAAGTAGGCTATA+AGG 0.432562 4_2:+11822484 Msa0589230:CDS
AAGGAGTATGATCTACCAAT+AGG 0.443273 4_2:+11822389 Msa0589230:CDS
TCTTTCTGATTGTAGAAAGA+AGG 0.444898 4_2:+11818570 Msa0589230:five_prime_UTR
AGGAAAGCTAGCAGACATAG+AGG 0.449690 4_2:+11822556 Msa0589230:CDS
GTATTTCAGGTACTGATCCT+TGG 0.456774 4_2:+11822843 Msa0589230:three_prime_UTR
ATTCCTCAGGTCTGCGAAGT+AGG 0.457321 4_2:+11822476 Msa0589230:CDS
AGGTCTTCTTGTATGGTTGG+TGG 0.461285 4_2:+11822796 Msa0589230:three_prime_UTR
TCACGAGGAAAGATTCCTAT+TGG 0.469668 4_2:-11822404 None:intergenic
AAAACAGAAAACAGGGATGA+TGG 0.476992 4_2:-11818536 None:intergenic
GCTTGAAGTCTTCATTCCTC+AGG 0.483186 4_2:+11822463 Msa0589230:CDS
GATCAAGTATTCAACAAGGT+TGG 0.497292 4_2:+11818600 Msa0589230:CDS
CGTAACATCATATGCTTCCC+TGG 0.503981 4_2:-11822675 None:intergenic
GAAGACAAAAGTTATTATCT+GGG 0.508796 4_2:+11822583 Msa0589230:CDS
AAGTTGCCTGCTTATTCGCT+AGG 0.523175 4_2:-11818499 None:intergenic
TCGAAGCTCTATGTGACTGC+TGG 0.534882 4_2:+11822635 Msa0589230:CDS
GTATCGAAGGCGGAACCAAA+TGG 0.539035 4_2:+11819694 Msa0589230:CDS
GTTACTGGTTATCTGGAGAA+AGG 0.540770 4_2:+11822536 Msa0589230:CDS
GCATATGATGTTACGAGAGA+TGG 0.542619 4_2:+11822683 Msa0589230:CDS
TCATACTCCTTTAACAACTC+TGG 0.548889 4_2:-11822377 None:intergenic
TACATTGATTTCATCACCGA+CGG 0.565687 4_2:-11818664 None:intergenic
TAGCGAATAAGCAGGCAACT+TGG 0.569471 4_2:+11818501 Msa0589230:five_prime_UTR
TACGAATTTAACGAAGAGAC+GGG 0.578620 4_2:+11822437 Msa0589230:CDS
CTACGAATTTAACGAAGAGA+CGG 0.579413 4_2:+11822436 Msa0589230:CDS
GCATGAAGAAAACAAGAACC+AGG 0.584014 4_2:+11822657 Msa0589230:CDS
TCGTAGTTTGTTGCATCACG+AGG 0.584895 4_2:-11822419 None:intergenic
AAATCACAACCCAAGGTCCA+AGG 0.587281 4_2:-11822860 None:intergenic
AAAAGTCCTAGCGAATAAGC+AGG 0.587437 4_2:+11818493 Msa0589230:five_prime_UTR
AGCAAGGAGCTTAATTCCGT+CGG 0.601708 4_2:+11818648 Msa0589230:CDS
GGAAAGCTAGCAGACATAGA+GGG 0.604204 4_2:+11822557 Msa0589230:CDS
CGAAGGCGGAACCAAATGGT+TGG 0.621013 4_2:+11819698 Msa0589230:CDS
GTTCAACCAGAAAGCCAGCA+AGG 0.624306 4_2:+11818632 Msa0589230:CDS
ATTTCTCAAATCACAACCCA+AGG 0.635629 4_2:-11822867 None:intergenic
AATGGTCTATAAAACAACAA+AGG 0.640345 4_2:-11822771 None:intergenic
GGGTTGTGATTTGAGAAATG+TGG 0.644526 4_2:+11822871 Msa0589230:three_prime_UTR
TCACTGTCGAACAGTATCGA+AGG 0.655695 4_2:+11819681 Msa0589230:CDS
TAGCCTACTTCGCAGACCTG+AGG 0.660590 4_2:-11822479 None:intergenic
CTCCAGATAACCAGTAACAG+TGG 0.669904 4_2:-11822531 None:intergenic
CATGAAGAAAACAAGAACCA+GGG 0.684808 4_2:+11822658 Msa0589230:CDS
AGTGGTGAAGAAACGCAAGA+CGG 0.697268 4_2:-11822513 None:intergenic
AATGGATCAAGTATTCAACA+AGG 0.730089 4_2:+11818596 Msa0589230:exon
CTGTCGAACAGTATCGAAGG+CGG 0.747673 4_2:+11819684 Msa0589230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTAAATTATTAATTTTTT+TGG + chr4_2:11818742-11818761 Msa0589230:intron 10.0%
!! TCCAAAAAAATTAATAATTT+AGG - chr4_2:11818746-11818765 None:intergenic 10.0%
!!! CTTTTTTTTTTTTTTTGAAT+CGG + chr4_2:11819898-11819917 Msa0589230:intron 10.0%
!!! AAGATATCTCAATTTTTAAT+TGG + chr4_2:11818859-11818878 Msa0589230:intron 15.0%
!! AAAATAATTAAACAGTGAAA+AGG + chr4_2:11821899-11821918 Msa0589230:intron 15.0%
!! TCTATTAACAAAATTATAGA+AGG - chr4_2:11822033-11822052 None:intergenic 15.0%
!! AAAAATTGGAAAACTGAAAA+GGG - chr4_2:11818698-11818717 None:intergenic 20.0%
!! AAAAAATTGGAAAACTGAAA+AGG - chr4_2:11818699-11818718 None:intergenic 20.0%
!! AGATGATGCATATAAAAAAT+TGG - chr4_2:11818712-11818731 None:intergenic 20.0%
!!! TTTTGGATAATTAAACCTTA+TGG + chr4_2:11818759-11818778 Msa0589230:intron 20.0%
!! TAATTAAACCTTATGGAAAT+TGG + chr4_2:11818766-11818785 Msa0589230:intron 20.0%
!! ATCAATTGAATTGAATTGAT+GGG + chr4_2:11818808-11818827 Msa0589230:intron 20.0%
!! TTCTATCAATTTCTCAATTT+GGG - chr4_2:11819845-11819864 None:intergenic 20.0%
!! TTTCTATCAATTTCTCAATT+TGG - chr4_2:11819846-11819865 None:intergenic 20.0%
!! GAGAAAAAAAAAACAAAGAA+GGG + chr4_2:11819974-11819993 Msa0589230:intron 20.0%
!! AGAAAAAAAAAACAAAGAAG+GGG + chr4_2:11819975-11819994 Msa0589230:intron 20.0%
!!! TCACTTATAAATACATTTTC+AGG - chr4_2:11821511-11821530 None:intergenic 20.0%
!!! TGTCTGTTTATAAGTTATTT+TGG + chr4_2:11821777-11821796 Msa0589230:intron 20.0%
!!! CAATTTTTAAAAGTCTTTTG+AGG + chr4_2:11821988-11822007 Msa0589230:intron 20.0%
!! AAGTAGTAAATATGTATTTC+AGG + chr4_2:11822830-11822849 Msa0589230:three_prime_UTR 20.0%
! ATGAACAAAAACAGAAAACA+GGG - chr4_2:11818546-11818565 None:intergenic 25.0%
! AATGAACAAAAACAGAAAAC+AGG - chr4_2:11818547-11818566 None:intergenic 25.0%
! AAAATTGGAAAACTGAAAAG+GGG - chr4_2:11818697-11818716 None:intergenic 25.0%
! GATCAATTGAATTGAATTGA+TGG + chr4_2:11818807-11818826 Msa0589230:intron 25.0%
! TCAATTGAATTGAATTGATG+GGG + chr4_2:11818809-11818828 Msa0589230:intron 25.0%
! CAACAAACATAAACATCATT+TGG - chr4_2:11818900-11818919 None:intergenic 25.0%
! CAAATGATGTTTATGTTTGT+TGG + chr4_2:11818898-11818917 Msa0589230:intron 25.0%
!!! TTTTCCTTGTTTTTGTTGAA+CGG - chr4_2:11819035-11819054 None:intergenic 25.0%
!!! TTTTAGGTGATTTTAAGTAC+TGG + chr4_2:11819251-11819270 Msa0589230:intron 25.0%
! CCATATCTACAAGTAAAATT+AGG - chr4_2:11819382-11819401 None:intergenic 25.0%
!! CCTAATTTTACTTGTAGATA+TGG + chr4_2:11819379-11819398 Msa0589230:intron 25.0%
! TTGTAATTCTGATTAAGCAA+GGG + chr4_2:11819435-11819454 Msa0589230:intron 25.0%
!! AAAGATGAATTTTCATTGCT+TGG + chr4_2:11819619-11819638 Msa0589230:intron 25.0%
! ATAAATGTTTGAGCAACATA+TGG - chr4_2:11819756-11819775 None:intergenic 25.0%
! TTGAGAAATTGATAGAAAAC+TGG + chr4_2:11819848-11819867 Msa0589230:intron 25.0%
! GGAGAAAAAAAAAACAAAGA+AGG + chr4_2:11819973-11819992 Msa0589230:intron 25.0%
!!! TTTAGTGGTGGTTTTTTAAA+GGG - chr4_2:11820038-11820057 None:intergenic 25.0%
!!! ATTTTAGTGGTGTTTCTATT+GGG - chr4_2:11820146-11820165 None:intergenic 25.0%
! CTATAATGATGTAAACTTTG+AGG - chr4_2:11820639-11820658 None:intergenic 25.0%
! AAAAATGTGAAGAAAGGTTT+AGG - chr4_2:11820716-11820735 None:intergenic 25.0%
! AGGAATAAAAATGTGAAGAA+AGG - chr4_2:11820722-11820741 None:intergenic 25.0%
! GAGATTATTATCAAATCAAG+TGG - chr4_2:11821152-11821171 None:intergenic 25.0%
!! AATTTACAAGCCTATTTTGT+AGG + chr4_2:11821543-11821562 Msa0589230:intron 25.0%
!! ATTTACAAGCCTATTTTGTA+GGG + chr4_2:11821544-11821563 Msa0589230:intron 25.0%
! TTGGAAGGAAAAATTGAATT+GGG - chr4_2:11821580-11821599 None:intergenic 25.0%
! ATTGGAAGGAAAAATTGAAT+TGG - chr4_2:11821581-11821600 None:intergenic 25.0%
! TCAAAAGTCACTAATTACTA+AGG - chr4_2:11821667-11821686 None:intergenic 25.0%
!!! GTAATTAGTGACTTTTGAAA+CGG + chr4_2:11821669-11821688 Msa0589230:intron 25.0%
! AAATTTAGTACTTTGAACCA+TGG + chr4_2:11821753-11821772 Msa0589230:intron 25.0%
! ATAATAGACAATTCATGAAG+TGG - chr4_2:11822122-11822141 None:intergenic 25.0%
! TGAATTGTCTATTATCCAAA+AGG + chr4_2:11822127-11822146 Msa0589230:intron 25.0%
!! ATAAACAATGGAAAACCTTT+TGG - chr4_2:11822145-11822164 None:intergenic 25.0%
!!! TATCTCTAAAACTGTAGTAA+TGG - chr4_2:11822182-11822201 None:intergenic 25.0%
! TCTATTTGACATAGCAATAA+TGG + chr4_2:11822269-11822288 Msa0589230:intron 25.0%
! GGATAGATTTCTATATTGAA+AGG + chr4_2:11822311-11822330 Msa0589230:intron 25.0%
! ACTTAATTATATCACTTTGC+AGG + chr4_2:11822335-11822354 Msa0589230:intron 25.0%
! TGAAGACAAAAGTTATTATC+TGG + chr4_2:11822582-11822601 Msa0589230:CDS 25.0%
! GAAGACAAAAGTTATTATCT+GGG + chr4_2:11822583-11822602 Msa0589230:CDS 25.0%
!!! AAGTTTTAGAACTTATCTAC+AGG - chr4_2:11822713-11822732 None:intergenic 25.0%
! AATGGTCTATAAAACAACAA+AGG - chr4_2:11822774-11822793 None:intergenic 25.0%
!!! GTTGTTTTATAGACCATTTT+AGG + chr4_2:11822776-11822795 Msa0589230:three_prime_UTR 25.0%
TCTTTCTGATTGTAGAAAGA+AGG + chr4_2:11818570-11818589 Msa0589230:five_prime_UTR 30.0%
ATTGTAGAAAGAAGGAGAAA+TGG + chr4_2:11818578-11818597 Msa0589230:exon 30.0%
AATGGATCAAGTATTCAACA+AGG + chr4_2:11818596-11818615 Msa0589230:exon 30.0%
ATTGATCAAATATAACAGCG+TGG - chr4_2:11818794-11818813 None:intergenic 30.0%
! TGATGTTTATGTTTGTTGGT+AGG + chr4_2:11818902-11818921 Msa0589230:intron 30.0%
!! CAATTTTAAGTACTAGACCA+CGG - chr4_2:11818952-11818971 None:intergenic 30.0%
! ACGATAAAAGTATAAGCTCA+CGG + chr4_2:11818976-11818995 Msa0589230:intron 30.0%
!!! TTTCCTTGTTTTTGTTGAAC+GGG - chr4_2:11819034-11819053 None:intergenic 30.0%
GGTTAGACAAAAACAAAGAA+AGG - chr4_2:11819095-11819114 None:intergenic 30.0%
! TTGCTTGTCGTTAGAATTTT+AGG + chr4_2:11819235-11819254 Msa0589230:intron 30.0%
ATTCATCAAAAACTAAGAGC+TGG - chr4_2:11819322-11819341 None:intergenic 30.0%
TGATGAATAAGTCATGACAT+CGG + chr4_2:11819334-11819353 Msa0589230:intron 30.0%
CTTGTAATTCTGATTAAGCA+AGG + chr4_2:11819434-11819453 Msa0589230:intron 30.0%
TTATCTCTAACAGGAAGATA+AGG - chr4_2:11819532-11819551 None:intergenic 30.0%
CATTACTCATTATCTCTAAC+AGG - chr4_2:11819541-11819560 None:intergenic 30.0%
TTTGAGCAACATATGGAAAT+AGG - chr4_2:11819749-11819768 None:intergenic 30.0%
!!! ACATTTATCTTTTCAAGTCC+TGG + chr4_2:11819768-11819787 Msa0589230:intron 30.0%
TGAAATCTTAAATGTAGCAC+AGG - chr4_2:11819802-11819821 None:intergenic 30.0%
! TTTCTCAATTTGGGATTACA+AGG - chr4_2:11819836-11819855 None:intergenic 30.0%
AAAAACAAAGAAGGGGAAAT+CGG + chr4_2:11819982-11820001 Msa0589230:intron 30.0%
!!! TTAGTGGTGGTTTTTTAAAG+GGG - chr4_2:11820037-11820056 None:intergenic 30.0%
!!! GTTTAGTGGTGGTTTTTTAA+AGG - chr4_2:11820039-11820058 None:intergenic 30.0%
CATTGTATTCATCTGTTTAG+TGG - chr4_2:11820053-11820072 None:intergenic 30.0%
!! GATTTTAGTGGTGTTTCTAT+TGG - chr4_2:11820147-11820166 None:intergenic 30.0%
!!! GTTTATTTTTTGAGTGGTGT+TGG - chr4_2:11820544-11820563 None:intergenic 30.0%
CACTCAAAAAATAAACACAC+CGG + chr4_2:11820548-11820567 Msa0589230:intron 30.0%
! TAATGATGTAAACTTTGAGG+TGG - chr4_2:11820636-11820655 None:intergenic 30.0%
! CTTTATGTGTTTTGTGCAAT+AGG - chr4_2:11820886-11820905 None:intergenic 30.0%
AATACTAGATTACCTTTGGT+CGG + chr4_2:11820935-11820954 Msa0589230:intron 30.0%
TATCAAATCAAGTGGATGTT+TGG - chr4_2:11821144-11821163 None:intergenic 30.0%
! TTTAAGTCTTATGGAGGATT+TGG - chr4_2:11821182-11821201 None:intergenic 30.0%
! GAGAAGACATCTTTTTATGT+GGG - chr4_2:11821218-11821237 None:intergenic 30.0%
! TAGATTCATCCTTTTCAGTT+TGG - chr4_2:11821240-11821259 None:intergenic 30.0%
CAGAAAGGTAAGGAAAAATT+TGG - chr4_2:11821402-11821421 None:intergenic 30.0%
TTGATGCAATTACATGCAAT+GGG - chr4_2:11821605-11821624 None:intergenic 30.0%
AACTTATAAACAGACATCCA+TGG - chr4_2:11821773-11821792 None:intergenic 30.0%
GAAATGGAGAGAATAAACAA+TGG - chr4_2:11822157-11822176 None:intergenic 30.0%
! AACTGTAGTAATGGAAGAAA+TGG - chr4_2:11822173-11822192 None:intergenic 30.0%
GATTTCAAATCATGTGACAA+AGG - chr4_2:11822244-11822263 None:intergenic 30.0%
! GGTATTTTGTACAACATCAA+AGG + chr4_2:11822290-11822309 Msa0589230:intron 30.0%
AAAACAGAAAACAGGGATGA+TGG - chr4_2:11818539-11818558 None:intergenic 35.0%
GATCAAGTATTCAACAAGGT+TGG + chr4_2:11818600-11818619 Msa0589230:CDS 35.0%
!! TACATTGATTTCATCACCGA+CGG - chr4_2:11818667-11818686 None:intergenic 35.0%
CAAGGAAAAATGAATACGTG+TGG + chr4_2:11819046-11819065 Msa0589230:intron 35.0%
!!! TTTTAAGTACTGGTCAACTG+TGG + chr4_2:11819261-11819280 Msa0589230:intron 35.0%
TCAAAACTGAACATGTGAGA+AGG - chr4_2:11819565-11819584 None:intergenic 35.0%
GACTGCATATCAAAAGAAGA+AGG - chr4_2:11819663-11819682 None:intergenic 35.0%
TACTTTGTTGACCAACCATT+TGG - chr4_2:11819712-11819731 None:intergenic 35.0%
! TGGTTGGTCAACAAAGTAAA+AGG + chr4_2:11819714-11819733 Msa0589230:CDS 35.0%
TGTATTCATCTGTTTAGTGG+TGG - chr4_2:11820050-11820069 None:intergenic 35.0%
!! GTGTTTCTATTGGGTGTTTT+TGG - chr4_2:11820137-11820156 None:intergenic 35.0%
! TTGTGCTTCAGTGATTTTAG+TGG - chr4_2:11820159-11820178 None:intergenic 35.0%
! TTTCTGTTGTGAAGGTTTTG+TGG - chr4_2:11820427-11820446 None:intergenic 35.0%
!!! CGGTGTGTTTATTTTTTGAG+TGG - chr4_2:11820550-11820569 None:intergenic 35.0%
GATGAATCGAATGACTATTC+CGG - chr4_2:11820570-11820589 None:intergenic 35.0%
!! AAACTTTGAGGTGGATGTTA+TGG - chr4_2:11820627-11820646 None:intergenic 35.0%
GTGGAAATGTCAGAATGATA+AGG - chr4_2:11820663-11820682 None:intergenic 35.0%
! TTTGGCTTAAGTTAATGTGG+TGG - chr4_2:11820811-11820830 None:intergenic 35.0%
! ATGTGTTTTGTGCAATAGGA+CGG - chr4_2:11820882-11820901 None:intergenic 35.0%
! ATTGAGGAATGTTCTAGCTA+CGG - chr4_2:11820918-11820937 None:intergenic 35.0%
CCAAAGGTAATCTAGTATTG+AGG - chr4_2:11820934-11820953 None:intergenic 35.0%
CCTCAATACTAGATTACCTT+TGG + chr4_2:11820931-11820950 Msa0589230:intron 35.0%
ATACTAGATTACCTTTGGTC+GGG + chr4_2:11820936-11820955 Msa0589230:intron 35.0%
TAAACCCTCCAACTTCTTAT+AGG + chr4_2:11821075-11821094 Msa0589230:intron 35.0%
! ACATCTTTTTATGTGGGAAG+AGG - chr4_2:11821212-11821231 None:intergenic 35.0%
! GGAGAAGACATCTTTTTATG+TGG - chr4_2:11821219-11821238 None:intergenic 35.0%
ATGTCTTCTCCAAACTGAAA+AGG + chr4_2:11821228-11821247 Msa0589230:intron 35.0%
TCATTCTAAATCCACAACAC+AGG - chr4_2:11821306-11821325 None:intergenic 35.0%
AAACTGAAAATAGTCAGCGT+AGG + chr4_2:11821340-11821359 Msa0589230:intron 35.0%
AACTGAAAATAGTCAGCGTA+GGG + chr4_2:11821341-11821360 Msa0589230:intron 35.0%
GAAAAATTTGGACATGAGAG+GGG - chr4_2:11821390-11821409 None:intergenic 35.0%
GGAAAAATTTGGACATGAGA+GGG - chr4_2:11821391-11821410 None:intergenic 35.0%
AGGAAAAATTTGGACATGAG+AGG - chr4_2:11821392-11821411 None:intergenic 35.0%
CTAACTCATCCCTACAAAAT+AGG - chr4_2:11821556-11821575 None:intergenic 35.0%
! CTATTTTGTAGGGATGAGTT+AGG + chr4_2:11821554-11821573 Msa0589230:intron 35.0%
TGATGCAATTACATGCAATG+GGG - chr4_2:11821604-11821623 None:intergenic 35.0%
GTTGATGCAATTACATGCAA+TGG - chr4_2:11821606-11821625 None:intergenic 35.0%
AACCATGTTTAGATGCTTTG+CGG + chr4_2:11821623-11821642 Msa0589230:intron 35.0%
TATGTGCACTAATCTCACAA+TGG + chr4_2:11821693-11821712 Msa0589230:intron 35.0%
ATTCAAACCGTATGAACTGT+TGG + chr4_2:11821923-11821942 Msa0589230:intron 35.0%
TTACTGACCAACAGTTCATA+CGG - chr4_2:11821933-11821952 None:intergenic 35.0%
AAATAAAGCAGAACCATTGG+TGG - chr4_2:11822097-11822116 None:intergenic 35.0%
GAGAAATAAAGCAGAACCAT+TGG - chr4_2:11822100-11822119 None:intergenic 35.0%
TCCTTTAACAACTCTGGTAA+TGG - chr4_2:11822374-11822393 None:intergenic 35.0%
TCATACTCCTTTAACAACTC+TGG - chr4_2:11822380-11822399 None:intergenic 35.0%
! AAGGAGTATGATCTACCAAT+AGG + chr4_2:11822389-11822408 Msa0589230:CDS 35.0%
CTACGAATTTAACGAAGAGA+CGG + chr4_2:11822436-11822455 Msa0589230:CDS 35.0%
TACGAATTTAACGAAGAGAC+GGG + chr4_2:11822437-11822456 Msa0589230:CDS 35.0%
CATGAAGAAAACAAGAACCA+GGG + chr4_2:11822658-11822677 Msa0589230:CDS 35.0%
CCATACAAGAAGACCTAAAA+TGG - chr4_2:11822792-11822811 None:intergenic 35.0%
!! CCATTTTAGGTCTTCTTGTA+TGG + chr4_2:11822789-11822808 Msa0589230:three_prime_UTR 35.0%
TTTAGGTCTTCTTGTATGGT+TGG + chr4_2:11822793-11822812 Msa0589230:three_prime_UTR 35.0%
ATTTCTCAAATCACAACCCA+AGG - chr4_2:11822870-11822889 None:intergenic 35.0%
AAAAGTCCTAGCGAATAAGC+AGG + chr4_2:11818493-11818512 Msa0589230:five_prime_UTR 40.0%
TCAACAAGGTTGGATCCTAT+TGG + chr4_2:11818610-11818629 Msa0589230:CDS 40.0%
ATTGGAAAACTGAAAAGGGG+AGG - chr4_2:11818694-11818713 None:intergenic 40.0%
! TTGTTGGTAGGCAGATTCTA+TGG + chr4_2:11818914-11818933 Msa0589230:intron 40.0%
!! TTTTAAGTACTAGACCACGG+TGG - chr4_2:11818949-11818968 None:intergenic 40.0%
GTACCCGTTCAACAAAAACA+AGG + chr4_2:11819028-11819047 Msa0589230:intron 40.0%
TTGTCTAACCGATAACGATC+AGG + chr4_2:11819105-11819124 Msa0589230:intron 40.0%
TTGTCTAACCGATAACGATC+AGG + chr4_2:11819105-11819124 Msa0589230:intron 40.0%
ACCGTTAACTCTTACTTCAG+AGG + chr4_2:11819205-11819224 Msa0589230:intron 40.0%
!! GCCTCTGAAGTAAGAGTTAA+CGG - chr4_2:11819209-11819228 None:intergenic 40.0%
AATAAGTCATGACATCGGTG+AGG + chr4_2:11819339-11819358 Msa0589230:intron 40.0%
ATAAGTCATGACATCGGTGA+GGG + chr4_2:11819340-11819359 Msa0589230:intron 40.0%
GTTTGTAACAAAGCTAACGC+TGG - chr4_2:11819510-11819529 None:intergenic 40.0%
GGATCAAAATACTCGCAGTT+AGG + chr4_2:11819869-11819888 Msa0589230:intron 40.0%
TTGGAGGTTCATTGTTTAGG+TGG - chr4_2:11820185-11820204 None:intergenic 40.0%
CTGTTGGAGGTTCATTGTTT+AGG - chr4_2:11820188-11820207 None:intergenic 40.0%
! TCAGTGTAAAGTGCAGGTTT+TGG - chr4_2:11820352-11820371 None:intergenic 40.0%
!! TATTTGCTGTGGTCAAGGTT+TGG - chr4_2:11820454-11820473 None:intergenic 40.0%
AGAAAGGTTTAGGCGTCATT+TGG - chr4_2:11820706-11820725 None:intergenic 40.0%
! ACCAAACCTTTTCGTGCATT+GGG - chr4_2:11820765-11820784 None:intergenic 40.0%
! CGGTTTGGCTTAAGTTAATG+TGG - chr4_2:11820814-11820833 None:intergenic 40.0%
TAGCCACATCACAATGTAGT+AGG + chr4_2:11820837-11820856 Msa0589230:intron 40.0%
TCTCCTACTACATTGTGATG+TGG - chr4_2:11820843-11820862 None:intergenic 40.0%
CATCACAATGTAGTAGGAGA+TGG + chr4_2:11820843-11820862 Msa0589230:intron 40.0%
! TTGAGGAATGTTCTAGCTAC+GGG - chr4_2:11820917-11820936 None:intergenic 40.0%
!!! TAGTTTTACGTGAGGTGTTG+TGG - chr4_2:11821057-11821076 None:intergenic 40.0%
CAAATCAAGTGGATGTTTGG+AGG - chr4_2:11821141-11821160 None:intergenic 40.0%
! AGTCTTATGGAGGATTTGGA+AGG - chr4_2:11821178-11821197 None:intergenic 40.0%
!! GGTGCTTTTAAGTCTTATGG+AGG - chr4_2:11821188-11821207 None:intergenic 40.0%
!!! GGAGGTGCTTTTAAGTCTTA+TGG - chr4_2:11821191-11821210 None:intergenic 40.0%
! TCTTTTTATGTGGGAAGAGG+AGG - chr4_2:11821209-11821228 None:intergenic 40.0%
CTAAATCCACAACACAGGTA+CGG - chr4_2:11821301-11821320 None:intergenic 40.0%
TCAATGTGAGACTCAGCAAA+GGG - chr4_2:11821477-11821496 None:intergenic 40.0%
TTCAATGTGAGACTCAGCAA+AGG - chr4_2:11821478-11821497 None:intergenic 40.0%
CAATTACATGCAATGGGGAT+TGG - chr4_2:11821599-11821618 None:intergenic 40.0%
! AACCGCAAAGCATCTAAACA+TGG - chr4_2:11821628-11821647 None:intergenic 40.0%
CTAAACCAGTTTGACACTAG+TGG + chr4_2:11822059-11822078 Msa0589230:intron 40.0%
TCATACCACTAGTGTCAAAC+TGG - chr4_2:11822067-11822086 None:intergenic 40.0%
GTATGAAGCAAAACCACCAA+TGG + chr4_2:11822081-11822100 Msa0589230:intron 40.0%
GCCATTACCAGAGTTGTTAA+AGG + chr4_2:11822370-11822389 Msa0589230:CDS 40.0%
TCACGAGGAAAGATTCCTAT+TGG - chr4_2:11822407-11822426 None:intergenic 40.0%
! GTTACTGGTTATCTGGAGAA+AGG + chr4_2:11822536-11822555 Msa0589230:CDS 40.0%
! AGTGACAACCATTTTCTCTG+AGG + chr4_2:11822610-11822629 Msa0589230:CDS 40.0%
! GTGACAACCATTTTCTCTGA+GGG + chr4_2:11822611-11822630 Msa0589230:CDS 40.0%
GCATGAAGAAAACAAGAACC+AGG + chr4_2:11822657-11822676 Msa0589230:CDS 40.0%
GCATATGATGTTACGAGAGA+TGG + chr4_2:11822683-11822702 Msa0589230:CDS 40.0%
!! GTATTTCAGGTACTGATCCT+TGG + chr4_2:11822843-11822862 Msa0589230:three_prime_UTR 40.0%
GGGTTGTGATTTGAGAAATG+TGG + chr4_2:11822871-11822890 Msa0589230:three_prime_UTR 40.0%
AAGTTGCCTGCTTATTCGCT+AGG - chr4_2:11818502-11818521 None:intergenic 45.0%
TAGCGAATAAGCAGGCAACT+TGG + chr4_2:11818501-11818520 Msa0589230:five_prime_UTR 45.0%
!! GGCTTTCTGGTTGAACCAAT+AGG - chr4_2:11818628-11818647 None:intergenic 45.0%
AGCAAGGAGCTTAATTCCGT+CGG + chr4_2:11818648-11818667 Msa0589230:CDS 45.0%
GCGTGGTTCCAATTTCCATA+AGG - chr4_2:11818777-11818796 None:intergenic 45.0%
AGGCAGATTCTATGGTCATG+TGG + chr4_2:11818922-11818941 Msa0589230:intron 45.0%
GACAGTGACCTGATCGTTAT+CGG - chr4_2:11819116-11819135 None:intergenic 45.0%
GACAGTGACCTGATCGTTAT+CGG - chr4_2:11819116-11819135 None:intergenic 45.0%
! TCTTAGCCATGATGACGAGT+AGG + chr4_2:11819182-11819201 Msa0589230:intron 45.0%
! CAACAAGGTGGATTCTATGC+TGG - chr4_2:11819288-11819307 None:intergenic 45.0%
CAGCATAGAATCCACCTTGT+TGG + chr4_2:11819286-11819305 Msa0589230:intron 45.0%
GTAATGCAACACCAACAAGG+TGG - chr4_2:11819300-11819319 None:intergenic 45.0%
! CTGGTAATGCAACACCAACA+AGG - chr4_2:11819303-11819322 None:intergenic 45.0%
TAAGTCATGACATCGGTGAG+GGG + chr4_2:11819341-11819360 Msa0589230:intron 45.0%
GCTAACGCTGGATTATGACA+CGG - chr4_2:11819498-11819517 None:intergenic 45.0%
! TCACTGTCGAACAGTATCGA+AGG + chr4_2:11819681-11819700 Msa0589230:CDS 45.0%
CTTATTAGTGCGTCTTGCAC+GGG - chr4_2:11819946-11819965 None:intergenic 45.0%
GCTTATTAGTGCGTCTTGCA+CGG - chr4_2:11819947-11819966 None:intergenic 45.0%
GCAAGACGCACTAATAAGCT+CGG + chr4_2:11819948-11819967 Msa0589230:intron 45.0%
CAAGACGCACTAATAAGCTC+GGG + chr4_2:11819949-11819968 Msa0589230:intron 45.0%
! TTGTTCGAGCTGTGTTGATG+TGG - chr4_2:11820011-11820030 None:intergenic 45.0%
!!! TGTTTTTGGTGTTGACGCAG+GGG - chr4_2:11820123-11820142 None:intergenic 45.0%
!!! GTGTTTTTGGTGTTGACGCA+GGG - chr4_2:11820124-11820143 None:intergenic 45.0%
TCCAACAGCTGCTGCAAAAA+CGG + chr4_2:11820200-11820219 Msa0589230:intron 45.0%
! TTTTCGTGTCTGTTGGCATG+CGG - chr4_2:11820287-11820306 None:intergenic 45.0%
!!! GGTGGGTGTTTTGGTATTTG+CGG - chr4_2:11820327-11820346 None:intergenic 45.0%
!! TGTAAAGTGCAGGTTTTGGC+GGG - chr4_2:11820348-11820367 None:intergenic 45.0%
!! GTGTAAAGTGCAGGTTTTGG+CGG - chr4_2:11820349-11820368 None:intergenic 45.0%
CTCTGTTCAGTGTAAAGTGC+AGG - chr4_2:11820358-11820377 None:intergenic 45.0%
TGCTTCTGTAGTTCTTGCCT+CGG - chr4_2:11820392-11820411 None:intergenic 45.0%
TTGGCAGGTTTCTGTTGTGA+AGG - chr4_2:11820435-11820454 None:intergenic 45.0%
ACCTTGACCACAGCAAATAC+AGG + chr4_2:11820455-11820474 Msa0589230:intron 45.0%
! TGTTATGGTGGAGGAGGTAA+AGG - chr4_2:11820612-11820631 None:intergenic 45.0%
!! CTTTGAGGTGGATGTTATGG+TGG - chr4_2:11820624-11820643 None:intergenic 45.0%
! TAGCAACGTTGTGGGTTTTG+TGG - chr4_2:11820682-11820701 None:intergenic 45.0%
CATTTGGCTAGCAACGTTGT+GGG - chr4_2:11820690-11820709 None:intergenic 45.0%
TCATTTGGCTAGCAACGTTG+TGG - chr4_2:11820691-11820710 None:intergenic 45.0%
!! ATTGGGAGTGTTGGCAAGAA+GGG - chr4_2:11820748-11820767 None:intergenic 45.0%
!! TTTTCGTGCATTGGGAGTGT+TGG - chr4_2:11820757-11820776 None:intergenic 45.0%
AACACTCCCAATGCACGAAA+AGG + chr4_2:11820756-11820775 Msa0589230:intron 45.0%
TCCCAATGCACGAAAAGGTT+TGG + chr4_2:11820761-11820780 Msa0589230:intron 45.0%
! CACCAAACCTTTTCGTGCAT+TGG - chr4_2:11820766-11820785 None:intergenic 45.0%
CAATGCACGAAAAGGTTTGG+TGG + chr4_2:11820764-11820783 Msa0589230:intron 45.0%
!! ACGAAAAGGTTTGGTGGAGA+TGG + chr4_2:11820770-11820789 Msa0589230:intron 45.0%
!! CGAAAAGGTTTGGTGGAGAT+GGG + chr4_2:11820771-11820790 Msa0589230:intron 45.0%
ACATTGTGATGTGGCTAGTG+CGG - chr4_2:11820834-11820853 None:intergenic 45.0%
TGTGGAGGGAAGACGAAAAA+GGG - chr4_2:11821039-11821058 None:intergenic 45.0%
TTGTGGAGGGAAGACGAAAA+AGG - chr4_2:11821040-11821059 None:intergenic 45.0%
!! TTTACGTGAGGTGTTGTGGA+GGG - chr4_2:11821053-11821072 None:intergenic 45.0%
!!! TTTTACGTGAGGTGTTGTGG+AGG - chr4_2:11821054-11821073 None:intergenic 45.0%
!!! GGAGGGTTTAGTTTTACGTG+AGG - chr4_2:11821065-11821084 None:intergenic 45.0%
TCGGCCTATAAGAAGTTGGA+GGG - chr4_2:11821082-11821101 None:intergenic 45.0%
TTCGGCCTATAAGAAGTTGG+AGG - chr4_2:11821083-11821102 None:intergenic 45.0%
GAGTTCGGCCTATAAGAAGT+TGG - chr4_2:11821086-11821105 None:intergenic 45.0%
! GGAAGAGATGGGTGTTTTCT+CGG - chr4_2:11821110-11821129 None:intergenic 45.0%
AGGTGGAAGTTGGAAGAGAT+GGG - chr4_2:11821121-11821140 None:intergenic 45.0%
ATCAAGTGGATGTTTGGAGG+TGG - chr4_2:11821138-11821157 None:intergenic 45.0%
TAGTATCCGTACCTGTGTTG+TGG + chr4_2:11821292-11821311 Msa0589230:intron 45.0%
ATGAGAGGGGTGAGAATACA+TGG - chr4_2:11821377-11821396 None:intergenic 45.0%
CGAGAGAAGACAGAAAGGTA+AGG - chr4_2:11821412-11821431 None:intergenic 45.0%
AGAGACGAGAGAAGACAGAA+AGG - chr4_2:11821417-11821436 None:intergenic 45.0%
TACATGCAATGGGGATTGGA+AGG - chr4_2:11821595-11821614 None:intergenic 45.0%
TCACAATGGATCTCCACAGT+TGG + chr4_2:11821707-11821726 Msa0589230:intron 45.0%
!! TCGTAGTTTGTTGCATCACG+AGG - chr4_2:11822422-11822441 None:intergenic 45.0%
GCTTGAAGTCTTCATTCCTC+AGG + chr4_2:11822463-11822482 Msa0589230:CDS 45.0%
AGTGGTGAAGAAACGCAAGA+CGG - chr4_2:11822516-11822535 None:intergenic 45.0%
CGTTTCTTCACCACTGTTAC+TGG + chr4_2:11822521-11822540 Msa0589230:CDS 45.0%
! CACCACTGTTACTGGTTATC+TGG + chr4_2:11822529-11822548 Msa0589230:CDS 45.0%
CTCCAGATAACCAGTAACAG+TGG - chr4_2:11822534-11822553 None:intergenic 45.0%
AGGAAAGCTAGCAGACATAG+AGG + chr4_2:11822556-11822575 Msa0589230:CDS 45.0%
GGAAAGCTAGCAGACATAGA+GGG + chr4_2:11822557-11822576 Msa0589230:CDS 45.0%
CTTCGATCCCTCAGAGAAAA+TGG - chr4_2:11822621-11822640 None:intergenic 45.0%
CGTAACATCATATGCTTCCC+TGG - chr4_2:11822678-11822697 None:intergenic 45.0%
AGGTCTTCTTGTATGGTTGG+TGG + chr4_2:11822796-11822815 Msa0589230:three_prime_UTR 45.0%
AAATCACAACCCAAGGTCCA+AGG - chr4_2:11822863-11822882 None:intergenic 45.0%
GTTCAACCAGAAAGCCAGCA+AGG + chr4_2:11818632-11818651 Msa0589230:CDS 50.0%
!! TAAGCTCCTTGCTGGCTTTC+TGG - chr4_2:11818641-11818660 None:intergenic 50.0%
GACGGAATTAAGCTCCTTGC+TGG - chr4_2:11818649-11818668 None:intergenic 50.0%
ATCAAGTCACCGTCCCATCT+AGG - chr4_2:11819006-11819025 None:intergenic 50.0%
AGATGGGACGGTGACTTGAT+CGG + chr4_2:11819006-11819025 Msa0589230:intron 50.0%
AACGGTCCTACTCGTCATCA+TGG - chr4_2:11819191-11819210 None:intergenic 50.0%
GACATCGGTGAGGGGAAATA+TGG + chr4_2:11819349-11819368 Msa0589230:intron 50.0%
TTAAGCAAGGGAAAGACGCG+AGG + chr4_2:11819447-11819466 Msa0589230:intron 50.0%
! CTGTCGAACAGTATCGAAGG+CGG + chr4_2:11819684-11819703 Msa0589230:CDS 50.0%
GTATCGAAGGCGGAACCAAA+TGG + chr4_2:11819694-11819713 Msa0589230:CDS 50.0%
GTAGCACAGGTTTCATAGCC+AGG - chr4_2:11819789-11819808 None:intergenic 50.0%
! TGACGCAGGGGTATGCATTT+GGG - chr4_2:11820111-11820130 None:intergenic 50.0%
! TTGACGCAGGGGTATGCATT+TGG - chr4_2:11820112-11820131 None:intergenic 50.0%
!!! GGTGTTTTTGGTGTTGACGC+AGG - chr4_2:11820125-11820144 None:intergenic 50.0%
! GTTTTTGCAGCAGCTGTTGG+AGG - chr4_2:11820201-11820220 None:intergenic 50.0%
!! TCCGTTTTTGCAGCAGCTGT+TGG - chr4_2:11820204-11820223 None:intergenic 50.0%
!!! CTGCTGGTTTTCGTGTCTGT+TGG - chr4_2:11820294-11820313 None:intergenic 50.0%
CAACAGACACGAAAACCAGC+AGG + chr4_2:11820292-11820311 Msa0589230:intron 50.0%
!!! TTGCGGCTGTTTTTTCCTGC+TGG - chr4_2:11820310-11820329 None:intergenic 50.0%
!! GCCTGTATTTGCTGTGGTCA+AGG - chr4_2:11820459-11820478 None:intergenic 50.0%
GCTGTGAGAACTAGGTTGCT+GGG - chr4_2:11820486-11820505 None:intergenic 50.0%
! CTAGTTCTCACAGCCGACTT+GGG + chr4_2:11820492-11820511 Msa0589230:intron 50.0%
! AGTGGTGTTGGAATCCCCAA+TGG - chr4_2:11820532-11820551 None:intergenic 50.0%
!! AAAGGTGTTGGCGTGGAAGT+GGG - chr4_2:11820594-11820613 None:intergenic 50.0%
!! TAAAGGTGTTGGCGTGGAAG+TGG - chr4_2:11820595-11820614 None:intergenic 50.0%
TGAGGTGGATGTTATGGTGG+AGG - chr4_2:11820621-11820640 None:intergenic 50.0%
!! AGTGTTGGCAAGAAGGGGAA+AGG - chr4_2:11820742-11820761 None:intergenic 50.0%
!! TTGGGAGTGTTGGCAAGAAG+GGG - chr4_2:11820747-11820766 None:intergenic 50.0%
!! CATTGGGAGTGTTGGCAAGA+AGG - chr4_2:11820749-11820768 None:intergenic 50.0%
ATGTAGTAGGAGATGGACCG+CGG + chr4_2:11820850-11820869 Msa0589230:intron 50.0%
CAATAGGACGGATGAATCCG+CGG - chr4_2:11820870-11820889 None:intergenic 50.0%
CTCAATCGTATCCCGACCAA+AGG - chr4_2:11820950-11820969 None:intergenic 50.0%
CAAAAGTGGTGGCTTTCGCT+TGG - chr4_2:11820982-11821001 None:intergenic 50.0%
!! GCGAAAGCCACCACTTTTGA+AGG + chr4_2:11820983-11821002 Msa0589230:intron 50.0%
AAGGGGTCTTTGCGAAGTTG+TGG - chr4_2:11821021-11821040 None:intergenic 50.0%
GTGGAGGGAAGACGAAAAAG+GGG - chr4_2:11821038-11821057 None:intergenic 50.0%
! GGGTGTTTTCTCGGTGAGTT+CGG - chr4_2:11821101-11821120 None:intergenic 50.0%
GAGGTGGAAGTTGGAAGAGA+TGG - chr4_2:11821122-11821141 None:intergenic 50.0%
GGATGTTTGGAGGTGGAAGT+TGG - chr4_2:11821131-11821150 None:intergenic 50.0%
! ATGGATCTCCACAGTTGGTG+TGG + chr4_2:11821712-11821731 Msa0589230:intron 50.0%
ATTCCTCAGGTCTGCGAAGT+AGG + chr4_2:11822476-11822495 Msa0589230:CDS 50.0%
GGTCTGCGAAGTAGGCTATA+AGG + chr4_2:11822484-11822503 Msa0589230:CDS 50.0%
TCGAAGCTCTATGTGACTGC+TGG + chr4_2:11822635-11822654 Msa0589230:CDS 50.0%
!! AGGTACTGATCCTTGGACCT+TGG + chr4_2:11822850-11822869 Msa0589230:three_prime_UTR 50.0%
!! GGTACTGATCCTTGGACCTT+GGG + chr4_2:11822851-11822870 Msa0589230:three_prime_UTR 50.0%
TATGGTCATGTGGTCCACCG+TGG + chr4_2:11818932-11818951 Msa0589230:intron 55.0%
AAGCTCACGGTCCTCCTAGA+TGG + chr4_2:11818989-11819008 Msa0589230:intron 55.0%
AGCTCACGGTCCTCCTAGAT+GGG + chr4_2:11818990-11819009 Msa0589230:intron 55.0%
AAGTCACCGTCCCATCTAGG+AGG - chr4_2:11819003-11819022 None:intergenic 55.0%
GACGCGAGGATCTGCAACTT+AGG + chr4_2:11819461-11819480 Msa0589230:intron 55.0%
CGAAGGCGGAACCAAATGGT+TGG + chr4_2:11819698-11819717 Msa0589230:CDS 55.0%
GACGCACTAATAAGCTCGGG+TGG + chr4_2:11819952-11819971 Msa0589230:intron 55.0%
!! GCTGTCTGCTGGGGTTTTGA+AGG - chr4_2:11820227-11820246 None:intergenic 55.0%
!! GTTTTGGCGGGTGGGTGTTT+TGG - chr4_2:11820336-11820355 None:intergenic 55.0%
!! AAGTGCAGGTTTTGGCGGGT+GGG - chr4_2:11820344-11820363 None:intergenic 55.0%
!! AAAGTGCAGGTTTTGGCGGG+TGG - chr4_2:11820345-11820364 None:intergenic 55.0%
TCTGTAGTTCTTGCCTCGGC+TGG - chr4_2:11820388-11820407 None:intergenic 55.0%
TGCTGTGGTCAAGGTTTGGC+AGG - chr4_2:11820450-11820469 None:intergenic 55.0%
! GGCTGTGCCTGTATTTGCTG+TGG - chr4_2:11820465-11820484 None:intergenic 55.0%
GGCTGTGAGAACTAGGTTGC+TGG - chr4_2:11820487-11820506 None:intergenic 55.0%
CCAAGTCGGCTGTGAGAACT+AGG - chr4_2:11820494-11820513 None:intergenic 55.0%
! CCTAGTTCTCACAGCCGACT+TGG + chr4_2:11820491-11820510 Msa0589230:intron 55.0%
! GCTTCGGCTAAGGCACCATT+GGG + chr4_2:11820514-11820533 Msa0589230:intron 55.0%
! CTTCGGCTAAGGCACCATTG+GGG + chr4_2:11820515-11820534 Msa0589230:intron 55.0%
!! AGGAGGTAAAGGTGTTGGCG+TGG - chr4_2:11820601-11820620 None:intergenic 55.0%
! GGTGGAGGAGGTAAAGGTGT+TGG - chr4_2:11820606-11820625 None:intergenic 55.0%
! GGTGGATGTTATGGTGGAGG+AGG - chr4_2:11820618-11820637 None:intergenic 55.0%
GTGATGTGGCTAGTGCGGTT+TGG - chr4_2:11820829-11820848 None:intergenic 55.0%
AGTGGTGGCTTTCGCTTGGA+GGG - chr4_2:11820978-11820997 None:intergenic 55.0%
AAGTGGTGGCTTTCGCTTGG+AGG - chr4_2:11820979-11820998 None:intergenic 55.0%
TGCGAAGTTGTGGAAGAGCC+CGG - chr4_2:11821011-11821030 None:intergenic 55.0%
TGCTCAGTCCACACCAACTG+TGG - chr4_2:11821723-11821742 None:intergenic 55.0%
TAGCCTACTTCGCAGACCTG+AGG - chr4_2:11822482-11822501 None:intergenic 55.0%
CACGGTCCTCCTAGATGGGA+CGG + chr4_2:11818994-11819013 Msa0589230:intron 60.0%
TGCGTCTTGCACGGGCTTGT+TGG - chr4_2:11819938-11819957 None:intergenic 60.0%
CGCGCTACACCAGGAAAAGC+AGG + chr4_2:11820249-11820268 Msa0589230:intron 60.0%
!! GCTCTGCTGCCTGCTTTTCC+TGG - chr4_2:11820261-11820280 None:intergenic 60.0%
CGTGTCTGTTGGCATGCGGT+AGG - chr4_2:11820283-11820302 None:intergenic 60.0%
ACAGAGAACTCCACCAGCCG+AGG + chr4_2:11820372-11820391 Msa0589230:intron 60.0%
GTAGTTCTTGCCTCGGCTGG+TGG - chr4_2:11820385-11820404 None:intergenic 60.0%
!! CTCACAGCCGACTTGGGCTT+CGG + chr4_2:11820498-11820517 Msa0589230:intron 60.0%
GCCTTAGCCGAAGCCCAAGT+CGG - chr4_2:11820508-11820527 None:intergenic 60.0%
! GGCTTCGGCTAAGGCACCAT+TGG + chr4_2:11820513-11820532 Msa0589230:intron 60.0%
!! GCCACCACTTTTGAAGGCGC+CGG + chr4_2:11820989-11821008 Msa0589230:intron 60.0%
!!! CCACCACTTTTGAAGGCGCC+GGG + chr4_2:11820990-11821009 Msa0589230:intron 60.0%
TAGCGCGCTGCTGTCTGCTG+GGG - chr4_2:11820236-11820255 None:intergenic 65.0%
GTAGCGCGCTGCTGTCTGCT+GGG - chr4_2:11820237-11820256 None:intergenic 65.0%
TGTAGCGCGCTGCTGTCTGC+TGG - chr4_2:11820238-11820257 None:intergenic 65.0%
AGACAGCAGCGCGCTACACC+AGG + chr4_2:11820240-11820259 Msa0589230:intron 65.0%
!! GCCGACTTGGGCTTCGGCTA+AGG + chr4_2:11820504-11820523 Msa0589230:intron 65.0%
CCCGGCGCCTTCAAAAGTGG+TGG - chr4_2:11820993-11821012 None:intergenic 65.0%
GAGCCCGGCGCCTTCAAAAG+TGG - chr4_2:11820996-11821015 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 11818484 11822925 11818484 ID=Msa0589230;Name=Msa0589230
chr4_2 mRNA 11818484 11822925 11818484 ID=Msa0589230-mRNA-1;Parent=Msa0589230;Name=Msa0589230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=113|1|1|1|1|1|3|198|170
chr4_2 exon 11818484 11818683 11818484 ID=Msa0589230-mRNA-1:exon:3476;Parent=Msa0589230-mRNA-1
chr4_2 exon 11819681 11819735 11819681 ID=Msa0589230-mRNA-1:exon:3477;Parent=Msa0589230-mRNA-1
chr4_2 exon 11822357 11822925 11822357 ID=Msa0589230-mRNA-1:exon:3478;Parent=Msa0589230-mRNA-1
chr4_2 five_prime_UTR 11818484 11818596 11818484 ID=Msa0589230-mRNA-1:five_prime_utr;Parent=Msa0589230-mRNA-1
chr4_2 CDS 11818597 11818683 11818597 ID=Msa0589230-mRNA-1:cds;Parent=Msa0589230-mRNA-1
chr4_2 CDS 11819681 11819735 11819681 ID=Msa0589230-mRNA-1:cds;Parent=Msa0589230-mRNA-1
chr4_2 CDS 11822357 11822727 11822357 ID=Msa0589230-mRNA-1:cds;Parent=Msa0589230-mRNA-1
chr4_2 three_prime_UTR 11822728 11822925 11822728 ID=Msa0589230-mRNA-1:three_prime_utr;Parent=Msa0589230-mRNA-1
Gene Sequence

>Msa0589230

ATGGATCAAGTATTCAACAAGGTTGGATCCTATTGGTTCAACCAGAAAGCCAGCAAGGAGCTTAATTCCGTCGGTGATGAAATCAATTCACTGTCGAACAGTATCGAAGGCGGAACCAAATGGTTGGTCAACAAAGTAAAAGGAAAAATGCAGAAGCCATTACCAGAGTTGTTAAAGGAGTATGATCTACCAATAGGAATCTTTCCTCGTGATGCAACAAACTACGAATTTAACGAAGAGACGGGAAAGCTTGAAGTCTTCATTCCTCAGGTCTGCGAAGTAGGCTATAAGGATTCATCCGTCTTGCGTTTCTTCACCACTGTTACTGGTTATCTGGAGAAAGGAAAGCTAGCAGACATAGAGGGAATGAAGACAAAAGTTATTATCTGGGTAAAAGTGACAACCATTTTCTCTGAGGGATCGAAGCTCTATGTGACTGCTGGCATGAAGAAAACAAGAACCAGGGAAGCATATGATGTTACGAGAGATGGCGTACCTGTAGATAAGTTCTAA
Protein sequence

>Msa0589230

MDQVFNKVGSYWFNQKASKELNSVGDEINSLSNSIEGGTKWLVNKVKGKMQKPLPELLKEYDLPIGIFPRDATNYEFNEETGKLEVFIPQVCEVGYKDSSVLRFFTTVTGYLEKGKLADIEGMKTKVIIWVKVTTIFSEGSKLYVTAGMKKTRTREAYDVTRDGVPVDKF*