Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597830 | XP_003595735.1 | 92.857 | 532 | 17 | 1 | 1 | 511 | 1 | 532 | 0.0 | 1002 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597830 | sp|Q9FPS3|UBP24_ARATH | 50.871 | 574 | 196 | 16 | 1 | 511 | 1 | 551 | 1.67e-161 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597830 | G7IGQ8 | 92.857 | 532 | 17 | 1 | 1 | 511 | 1 | 532 | 0.0 | 1002 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0597830 | Msa0637600 | 0.952500 | 2.120900e-110 | -8.615850e-47 |
| Msa0597830 | Msa0637720 | 0.958452 | 2.277323e-116 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597830 | MtrunA17_Chr4g0020741 | 92.857 | 532 | 17 | 1 | 1 | 511 | 1 | 532 | 0.0 | 1002 |
| Msa0597830 | MtrunA17_Chr2g0312901 | 28.406 | 345 | 195 | 10 | 181 | 510 | 21 | 328 | 3.07e-25 | 109 |
| Msa0597830 | MtrunA17_Chr4g0074041 | 27.844 | 334 | 200 | 9 | 183 | 508 | 93 | 393 | 3.63e-23 | 103 |
| Msa0597830 | MtrunA17_Chr3g0123951 | 27.855 | 359 | 210 | 14 | 183 | 511 | 24 | 363 | 8.05e-23 | 100 |
| Msa0597830 | MtrunA17_Chr1g0150541 | 28.342 | 374 | 193 | 16 | 158 | 511 | 169 | 487 | 8.09e-22 | 99.4 |
| Msa0597830 | MtrunA17_Chr6g0458421 | 25.220 | 341 | 203 | 9 | 181 | 510 | 28 | 327 | 1.27e-21 | 98.2 |
| Msa0597830 | MtrunA17_Chr6g0458441 | 24.638 | 345 | 200 | 9 | 181 | 510 | 126 | 425 | 2.59e-21 | 97.8 |
| Msa0597830 | MtrunA17_Chr8g0366721 | 26.271 | 354 | 167 | 13 | 183 | 510 | 213 | 498 | 1.70e-20 | 94.7 |
| Msa0597830 | MtrunA17_Chr5g0411271 | 26.361 | 349 | 182 | 13 | 183 | 510 | 155 | 449 | 1.47e-19 | 92.4 |
| Msa0597830 | MtrunA17_Chr2g0313171 | 27.577 | 359 | 179 | 16 | 181 | 510 | 463 | 769 | 1.22e-18 | 89.7 |
| Msa0597830 | MtrunA17_Chr6g0458431 | 24.198 | 343 | 200 | 9 | 181 | 508 | 93 | 390 | 2.22e-18 | 88.6 |
| Msa0597830 | MtrunA17_Chr8g0365831 | 24.581 | 358 | 182 | 14 | 183 | 510 | 165 | 464 | 7.40e-15 | 77.0 |
| Msa0597830 | MtrunA17_Chr4g0062561 | 25.150 | 334 | 193 | 10 | 183 | 508 | 254 | 538 | 7.37e-14 | 74.7 |
| Msa0597830 | MtrunA17_Chr2g0322211 | 34.711 | 121 | 68 | 4 | 396 | 511 | 748 | 862 | 1.78e-12 | 70.1 |
| Msa0597830 | MtrunA17_Chr7g0255591 | 34.746 | 118 | 74 | 3 | 396 | 511 | 785 | 901 | 5.33e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597830 | AT4G30890.1 | 50.871 | 574 | 196 | 16 | 1 | 511 | 1 | 551 | 1.70e-162 | 472 |
| Msa0597830 | AT4G30890.2 | 50.871 | 574 | 196 | 16 | 1 | 511 | 1 | 551 | 1.70e-162 | 472 |
| Msa0597830 | AT4G30890.3 | 50.871 | 574 | 196 | 16 | 1 | 511 | 1 | 551 | 1.70e-162 | 472 |
| Msa0597830 | AT5G57990.1 | 26.567 | 335 | 202 | 9 | 183 | 508 | 108 | 407 | 2.94e-23 | 104 |
| Msa0597830 | AT3G14400.1 | 26.648 | 349 | 200 | 9 | 181 | 510 | 23 | 334 | 1.60e-22 | 101 |
| Msa0597830 | AT5G65450.2 | 27.299 | 348 | 198 | 12 | 178 | 510 | 344 | 651 | 2.00e-22 | 101 |
| Msa0597830 | AT5G65450.1 | 27.299 | 348 | 198 | 12 | 178 | 510 | 325 | 632 | 2.26e-22 | 101 |
| Msa0597830 | AT4G24560.1 | 28.329 | 353 | 191 | 15 | 178 | 511 | 538 | 847 | 2.27e-21 | 98.6 |
| Msa0597830 | AT5G46740.1 | 25.369 | 339 | 204 | 7 | 183 | 508 | 164 | 466 | 2.41e-21 | 98.2 |
| Msa0597830 | AT2G22310.1 | 28.134 | 359 | 208 | 15 | 183 | 511 | 24 | 362 | 3.05e-21 | 95.9 |
| Msa0597830 | AT4G31670.1 | 28.249 | 354 | 191 | 15 | 178 | 511 | 164 | 474 | 4.34e-21 | 97.4 |
| Msa0597830 | AT4G39910.1 | 26.558 | 369 | 206 | 17 | 183 | 511 | 24 | 367 | 1.38e-20 | 94.0 |
| Msa0597830 | AT1G17110.3 | 26.361 | 349 | 198 | 14 | 178 | 508 | 434 | 741 | 4.49e-20 | 94.7 |
| Msa0597830 | AT1G17110.1 | 26.361 | 349 | 198 | 14 | 178 | 508 | 434 | 741 | 4.49e-20 | 94.7 |
| Msa0597830 | AT1G17110.2 | 26.361 | 349 | 198 | 14 | 178 | 508 | 438 | 745 | 4.75e-20 | 94.4 |
| Msa0597830 | AT2G22310.3 | 26.705 | 352 | 194 | 15 | 197 | 511 | 6 | 330 | 2.52e-17 | 83.6 |
| Msa0597830 | AT5G46740.2 | 26.087 | 276 | 160 | 5 | 241 | 508 | 18 | 257 | 4.15e-17 | 84.7 |
| Msa0597830 | AT5G22030.2 | 35.246 | 122 | 67 | 3 | 396 | 511 | 796 | 911 | 2.44e-13 | 73.2 |
| Msa0597830 | AT5G22030.1 | 35.246 | 122 | 67 | 3 | 396 | 511 | 754 | 869 | 2.84e-13 | 73.2 |
| Msa0597830 | AT4G17895.1 | 23.684 | 342 | 204 | 8 | 183 | 510 | 177 | 475 | 1.05e-12 | 71.2 |
| Msa0597830 | AT2G40930.1 | 35.897 | 117 | 72 | 3 | 396 | 510 | 800 | 915 | 2.50e-12 | 70.1 |
| Msa0597830 | AT2G40930.2 | 35.897 | 117 | 72 | 3 | 396 | 510 | 800 | 915 | 2.50e-12 | 70.1 |
Find 143 sgRNAs with CRISPR-Local
Find 453 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACAGCGTCTCCTCTTTC+AGG | 0.120112 | 4_2:+31083023 | Msa0597830:five_prime_UTR |
| CGTGATTCTCAGAAATTTAA+AGG | 0.150466 | 4_2:+31083991 | Msa0597830:CDS |
| TTCACTAGCTCGAAAGAAAT+TGG | 0.154034 | 4_2:+31088965 | Msa0597830:three_prime_UTR |
| CGGTAACCTTCAAGAGTTTC+TGG | 0.156851 | 4_2:-31086333 | None:intergenic |
| GTTACACCAATTGATGAAAA+TGG | 0.235400 | 4_2:+31084147 | Msa0597830:CDS |
| TGGGAGCAGGTGTTACTATT+TGG | 0.239238 | 4_2:+31083802 | Msa0597830:intron |
| CTTTGCTATTGCAACAAATA+AGG | 0.245305 | 4_2:+31088599 | Msa0597830:CDS |
| CTTTCCTCTTGAATTGGTAT+TGG | 0.248503 | 4_2:+31087323 | Msa0597830:CDS |
| GTAACAGCAGATTTATTCTT+TGG | 0.248970 | 4_2:-31085842 | None:intergenic |
| TCTTCGTCGATGCTTCTTCT+TGG | 0.256494 | 4_2:+31082929 | Msa0597830:five_prime_UTR |
| GCAGATCAACTTTAGTTGTT+AGG | 0.272125 | 4_2:+31089089 | Msa0597830:three_prime_UTR |
| TTTATTCCCTCAGAATTAAA+TGG | 0.273600 | 4_2:+31085878 | Msa0597830:CDS |
| TTTGGTGCTTTCGGTGAATT+TGG | 0.281536 | 4_2:-31083955 | None:intergenic |
| CCAGTTTACGAATTTGAGTT+TGG | 0.307610 | 4_2:+31084179 | Msa0597830:CDS |
| TTTCCTCTTGAATTGGTATT+GGG | 0.309419 | 4_2:+31087324 | Msa0597830:CDS |
| ATAAATTCCCAGAGTTAATA+AGG | 0.309476 | 4_2:-31084344 | None:intergenic |
| TTAAATCATTGCATATTTAT+CGG | 0.313727 | 4_2:-31089167 | None:intergenic |
| ATTTAACCAAGACTTGAAAA+AGG | 0.314327 | 4_2:+31084272 | Msa0597830:CDS |
| AGGTGCAATATCATTACTTT+AGG | 0.315233 | 4_2:-31087246 | None:intergenic |
| TATTGTTGCAGTCTTTGTTT+AGG | 0.320992 | 4_2:+31089053 | Msa0597830:three_prime_UTR |
| AATCGCAGCCACCGACCATT+AGG | 0.322141 | 4_2:-31088561 | None:intergenic |
| AGGACATCTTCAAACATAAC+AGG | 0.328529 | 4_2:-31084822 | None:intergenic |
| ATGCGAGTGATTATTCATTA+AGG | 0.330035 | 4_2:+31088769 | Msa0597830:three_prime_UTR |
| CGGAGGACAACTCCAAAGTT+TGG | 0.335704 | 4_2:+31085907 | Msa0597830:CDS |
| GGACAGTCTTCAAGTCTTAA+TGG | 0.340469 | 4_2:+31085764 | Msa0597830:CDS |
| GATATGTTTACCTCAGTATA+TGG | 0.342798 | 4_2:-31087366 | None:intergenic |
| TCACGGAGAGGAGCACTATT+TGG | 0.352711 | 4_2:-31083973 | None:intergenic |
| CCAAACTCAAATTCGTAAAC+TGG | 0.354303 | 4_2:-31084179 | None:intergenic |
| CGTGCACTTTCCTCTTGAAT+TGG | 0.361534 | 4_2:+31087317 | Msa0597830:CDS |
| GAGAAGAATCAGCTGCAATT+TGG | 0.366023 | 4_2:+31083895 | Msa0597830:CDS |
| ATATTGCACCTAATGCGTTT+TGG | 0.371667 | 4_2:+31087258 | Msa0597830:CDS |
| TCAATGGTGTGAACAGCATC+AGG | 0.372539 | 4_2:-31086285 | None:intergenic |
| TGCAACCGTGCAGGCTCTCT+TGG | 0.378354 | 4_2:+31084377 | Msa0597830:CDS |
| TCTTATCACACACTCTAGAT+TGG | 0.380989 | 4_2:-31088812 | None:intergenic |
| GGAGCACTATTTGGTGCTTT+CGG | 0.387557 | 4_2:-31083964 | None:intergenic |
| GGTTACCGAGCATCGGTCTC+TGG | 0.393785 | 4_2:+31086348 | Msa0597830:CDS |
| AAAAGGGAGTAGATATCAAC+AGG | 0.395187 | 4_2:-31088681 | None:intergenic |
| TAAGCAACTTGGTGCTTCCC+TGG | 0.400831 | 4_2:-31087290 | None:intergenic |
| GGAATTTCTGAGCTTTGTAA+TGG | 0.401010 | 4_2:+31085709 | Msa0597830:CDS |
| TGCATAACAGCATGCCCATT+AGG | 0.406025 | 4_2:-31084297 | None:intergenic |
| TCGAGATGGATCAAGCGATA+TGG | 0.420936 | 4_2:-31086255 | None:intergenic |
| TCACTAGCTCGAAAGAAATT+GGG | 0.423231 | 4_2:+31088966 | Msa0597830:three_prime_UTR |
| GCCACCGACCATTAGGGTAC+TGG | 0.426370 | 4_2:-31088554 | None:intergenic |
| TTCTTTAAGTTTACACCGCT+TGG | 0.426766 | 4_2:-31084759 | None:intergenic |
| CAAGGTTTGTGTATAGAGAA+AGG | 0.428549 | 4_2:-31083077 | None:intergenic |
| AAGAAGAAGAAGATGAAGAA+AGG | 0.430775 | 4_2:-31082910 | None:intergenic |
| AGAAGAAGAAGATGAAGAAA+GGG | 0.431877 | 4_2:-31082909 | None:intergenic |
| TGGTAATTCAAAAGCTCAAA+CGG | 0.434595 | 4_2:+31082949 | Msa0597830:five_prime_UTR |
| GAGAAAGGAGGAAAATCAAA+AGG | 0.443748 | 4_2:-31083062 | None:intergenic |
| AAATAAGGTGCTGCATGATC+AGG | 0.444504 | 4_2:+31088614 | Msa0597830:CDS |
| TGCAGCTGATTCTTCTCCAC+AGG | 0.448468 | 4_2:-31083889 | None:intergenic |
| TTCCATAACCAAAACGCATT+AGG | 0.451915 | 4_2:-31087266 | None:intergenic |
| TCCTGCAAAAGCTGAACAAA+AGG | 0.451972 | 4_2:-31084408 | None:intergenic |
| ATCGCAGCCACCGACCATTA+GGG | 0.452783 | 4_2:-31088560 | None:intergenic |
| GACGAATTACTGAAGCTTGA+AGG | 0.453272 | 4_2:+31085743 | Msa0597830:CDS |
| GTGCTTTCGGTGAATTTGGC+AGG | 0.453991 | 4_2:-31083951 | None:intergenic |
| CCTCGAGGCCTTATTAACTC+TGG | 0.457487 | 4_2:+31084336 | Msa0597830:CDS |
| GGTAATTCAAAAGCTCAAAC+GGG | 0.461824 | 4_2:+31082950 | Msa0597830:five_prime_UTR |
| GCTGATGCCCAGTACCCTAA+TGG | 0.462446 | 4_2:+31088546 | Msa0597830:CDS |
| TTACAAAGCTCAGAAATTCC+TGG | 0.463282 | 4_2:-31085706 | None:intergenic |
| GAGTTTCTGGAGCAGAGAAC+AGG | 0.464848 | 4_2:-31086320 | None:intergenic |
| CTTTAGTTATCACCAAACTT+TGG | 0.466105 | 4_2:-31085919 | None:intergenic |
| TTCTGTGGAAGATGATGAAT+GGG | 0.466491 | 4_2:+31085808 | Msa0597830:CDS |
| TTACAGCGTCTCCTCTTTCA+GGG | 0.466795 | 4_2:+31083024 | Msa0597830:five_prime_UTR |
| AAGGAGGAAAATCAAAAGGT+AGG | 0.468850 | 4_2:-31083058 | None:intergenic |
| CATGGAAGGGAGCCTTCAAA+AGG | 0.476899 | 4_2:+31088513 | Msa0597830:CDS |
| GTTGCTACAATTACTCATCA+TGG | 0.478854 | 4_2:+31088495 | Msa0597830:CDS |
| CTTCTGTGGAAGATGATGAA+TGG | 0.479192 | 4_2:+31085807 | Msa0597830:CDS |
| TCTGCTCCAGAAACTCTTGA+AGG | 0.487177 | 4_2:+31086327 | Msa0597830:CDS |
| AGGAGGAAAATCAAAAGGTA+GGG | 0.498898 | 4_2:-31083057 | None:intergenic |
| CAAAGTTTGGTGATAACTAA+AGG | 0.501251 | 4_2:+31085920 | Msa0597830:CDS |
| CTTCCTTAGTGCAACCGTGC+AGG | 0.502300 | 4_2:+31084368 | Msa0597830:CDS |
| TTTGCACTAGTGATACTTGA+GGG | 0.507883 | 4_2:-31084096 | None:intergenic |
| AAAATACCATTTAATTCTGA+GGG | 0.508677 | 4_2:-31085884 | None:intergenic |
| TAATCACTCGCATCTTCTCC+AGG | 0.509556 | 4_2:-31088759 | None:intergenic |
| TGCTCATATTGCTGAAGAGA+TGG | 0.514308 | 4_2:-31083146 | None:intergenic |
| TTTATAGTTTCTGTTACTTG+AGG | 0.515498 | 4_2:-31084039 | None:intergenic |
| ACAGAAACTATAAAAGAGAA+TGG | 0.517959 | 4_2:+31084048 | Msa0597830:CDS |
| CTGGAGCAGAGAACAGGTGC+AGG | 0.520052 | 4_2:-31086314 | None:intergenic |
| CTCGAGGCCTTATTAACTCT+GGG | 0.522645 | 4_2:+31084337 | Msa0597830:CDS |
| CCACCGACCATTAGGGTACT+GGG | 0.524640 | 4_2:-31088553 | None:intergenic |
| CAGGTGCAGGGCATCCTCAA+TGG | 0.527009 | 4_2:-31086301 | None:intergenic |
| ACATGTTCACGTCCTAAACT+AGG | 0.527070 | 4_2:-31088893 | None:intergenic |
| CAGTATATGGTGAAACAAGC+AGG | 0.532160 | 4_2:-31087353 | None:intergenic |
| TATTGCTGAAGAGATGGAAG+AGG | 0.533935 | 4_2:-31083140 | None:intergenic |
| AGATGAAACCAGATCATTGT+GGG | 0.541732 | 4_2:+31083837 | Msa0597830:CDS |
| TTTGAGTTTGGATGCTTCCG+AGG | 0.542094 | 4_2:+31084191 | Msa0597830:CDS |
| CAAGCGATATGGTTGATTAG+TGG | 0.543313 | 4_2:-31086244 | None:intergenic |
| GAAAATACCATTTAATTCTG+AGG | 0.543985 | 4_2:-31085885 | None:intergenic |
| CTACAATTACTCATCATGGA+AGG | 0.546652 | 4_2:+31088499 | Msa0597830:CDS |
| AGAATAAATCTGCTGTTACA+AGG | 0.547889 | 4_2:+31085846 | Msa0597830:CDS |
| CAGAAATTTAAAGGAGTGAA+CGG | 0.548010 | 4_2:+31084000 | Msa0597830:CDS |
| GAGCCTGCACGGTTGCACTA+AGG | 0.549129 | 4_2:-31084371 | None:intergenic |
| CTTTAAATTTCTGAGAATCA+CGG | 0.550479 | 4_2:-31083990 | None:intergenic |
| TACAAAGCTCAGAAATTCCT+GGG | 0.553730 | 4_2:-31085705 | None:intergenic |
| ATGATGAATGGGAAACAGTA+GGG | 0.553915 | 4_2:+31085819 | Msa0597830:CDS |
| GTGCACGGGCTTAAGCAACT+TGG | 0.554134 | 4_2:-31087301 | None:intergenic |
| CAGCAATATGAGCAATCCTA+AGG | 0.565599 | 4_2:+31083155 | Msa0597830:exon |
| GATGATGAATGGGAAACAGT+AGG | 0.568873 | 4_2:+31085818 | Msa0597830:CDS |
| CTGTAATTGAAGACATGAAG+AGG | 0.569803 | 4_2:-31083007 | None:intergenic |
| TCTCAGGCAAGAAGATGCCC+AGG | 0.569830 | 4_2:+31085688 | Msa0597830:intron |
| GTTCTTCAAACTTTCAGCCT+CGG | 0.573342 | 4_2:-31084208 | None:intergenic |
| TCTTGAAGGTTACCGAGCAT+CGG | 0.578705 | 4_2:+31086341 | Msa0597830:CDS |
| AAGAGCTCGTACCATTCCTA+AGG | 0.579648 | 4_2:+31084434 | Msa0597830:CDS |
| CCGAGCATCGGTCTCTGGAA+AGG | 0.582535 | 4_2:+31086353 | Msa0597830:CDS |
| ATCAACAATCAACACATCAA+AGG | 0.585601 | 4_2:-31089015 | None:intergenic |
| CGACCCAATACCAATTCAAG+AGG | 0.592600 | 4_2:-31087327 | None:intergenic |
| ATGGAAGGGAGCCTTCAAAA+GGG | 0.595602 | 4_2:+31088514 | Msa0597830:CDS |
| TTCAAAAGCTCAAACGGGGA+GGG | 0.595743 | 4_2:+31082955 | Msa0597830:five_prime_UTR |
| AGGATAGACTACCTTAGGAA+TGG | 0.608535 | 4_2:-31084445 | None:intergenic |
| TACAATTACTCATCATGGAA+GGG | 0.609584 | 4_2:+31088500 | Msa0597830:CDS |
| GTTTGCACTAGTGATACTTG+AGG | 0.610703 | 4_2:-31084097 | None:intergenic |
| AGCACTACTAATTTCTCCAT+CGG | 0.616818 | 4_2:+31084072 | Msa0597830:CDS |
| TGCGAGAAATGAAAAGCCTG+TGG | 0.616964 | 4_2:+31083873 | Msa0597830:CDS |
| CCCAGTACCCTAATGGTCGG+TGG | 0.618099 | 4_2:+31088553 | Msa0597830:CDS |
| ATGCCCAGTACCCTAATGGT+CGG | 0.618899 | 4_2:+31088550 | Msa0597830:CDS |
| AATTCAAGAGGAAAGTGCAC+GGG | 0.623483 | 4_2:-31087315 | None:intergenic |
| AGTGATACTTGAGGGACCGA+TGG | 0.623508 | 4_2:-31084088 | None:intergenic |
| ACAAGCCAAGAGAGCCTGCA+CGG | 0.624808 | 4_2:-31084382 | None:intergenic |
| AGAGAGAGAGAAGTTAACAA+AGG | 0.629372 | 4_2:-31082980 | None:intergenic |
| ATTCAAAAGCTCAAACGGGG+AGG | 0.630838 | 4_2:+31082954 | Msa0597830:five_prime_UTR |
| CATCAGGGTGAATGTCGAGA+TGG | 0.631557 | 4_2:-31086269 | None:intergenic |
| CTGTTTGTAGAAAAGAACAT+AGG | 0.634054 | 4_2:-31088637 | None:intergenic |
| TGGAAGAGGAAGATGCAACA+AGG | 0.634962 | 4_2:-31083126 | None:intergenic |
| GCATGCTGTTATGCATGCTA+AGG | 0.640605 | 4_2:+31084305 | Msa0597830:CDS |
| CCTTTCCAGAGACCGATGCT+CGG | 0.644404 | 4_2:-31086353 | None:intergenic |
| CAATTCAAGAGGAAAGTGCA+CGG | 0.646305 | 4_2:-31087316 | None:intergenic |
| TGATGCTGTTCACACCATTG+AGG | 0.657974 | 4_2:+31086287 | Msa0597830:CDS |
| AAGATGAAACCAGATCATTG+TGG | 0.658086 | 4_2:+31083836 | Msa0597830:CDS |
| TGGAGCAGAGAACAGGTGCA+GGG | 0.664257 | 4_2:-31086313 | None:intergenic |
| GCTAAGGATCTTCAGCCTCG+AGG | 0.673728 | 4_2:+31084321 | Msa0597830:CDS |
| AATTTCTGAGAATCACGGAG+AGG | 0.675867 | 4_2:-31083985 | None:intergenic |
| CAATGGTGTGAACAGCATCA+GGG | 0.677442 | 4_2:-31086284 | None:intergenic |
| GCTTGTTTCACCATATACTG+AGG | 0.678531 | 4_2:+31087356 | Msa0597830:CDS |
| GGTTACGAAAAGACGAAAGG+TGG | 0.684786 | 4_2:-31082823 | None:intergenic |
| TAGGGTTACGAAAAGACGAA+AGG | 0.685188 | 4_2:-31082826 | None:intergenic |
| GGTTTGTGTATAGAGAAAGG+AGG | 0.685198 | 4_2:-31083074 | None:intergenic |
| GGACATCTTCAAACATAACA+GGG | 0.689713 | 4_2:-31084821 | None:intergenic |
| GTAATTCAAAAGCTCAAACG+GGG | 0.693530 | 4_2:+31082951 | Msa0597830:five_prime_UTR |
| ACTCAATTTGACATGCCAAG+CGG | 0.702135 | 4_2:+31084744 | Msa0597830:CDS |
| CCAGAGTTAATAAGGCCTCG+AGG | 0.730888 | 4_2:-31084336 | None:intergenic |
| TCATGGTCTAGATAACAAGG+AGG | 0.741433 | 4_2:-31088857 | None:intergenic |
| AAAGGGAGTAGATATCAACA+GGG | 0.750009 | 4_2:-31088680 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAATAAATAATGATA+TGG | - | chr4_2:31086204-31086223 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTAATTTTTTCT+TGG | - | chr4_2:31086588-31086607 | None:intergenic | 10.0% |
| !!! | AAAAATTGATATATTTTTTC+AGG | + | chr4_2:31087185-31087204 | Msa0597830:intron | 10.0% |
| !!! | ATTTTAAATTTTTAAGAGTT+TGG | + | chr4_2:31088396-31088415 | Msa0597830:intron | 10.0% |
| !!! | TTGTTTTATTTTGTTTGAAA+TGG | + | chr4_2:31083554-31083573 | Msa0597830:intron | 15.0% |
| !!! | TTATTACTGTGTAATTTTTT+AGG | + | chr4_2:31084683-31084702 | Msa0597830:intron | 15.0% |
| !!! | TATTTATTTTTTTCCTTTTC+AGG | + | chr4_2:31086210-31086229 | Msa0597830:intron | 15.0% |
| !! | GTATTCAAAACTAAATTAAA+GGG | - | chr4_2:31086385-31086404 | None:intergenic | 15.0% |
| !! | TGTATTCAAAACTAAATTAA+AGG | - | chr4_2:31086386-31086405 | None:intergenic | 15.0% |
| !! | GTTTATTTGAAAAGAAAAAA+AGG | - | chr4_2:31086940-31086959 | None:intergenic | 15.0% |
| !!! | TATAGGTTCAATTATATTTT+TGG | + | chr4_2:31086995-31087014 | Msa0597830:intron | 15.0% |
| !! | TAAATCTTAAATGTATGTAA+AGG | - | chr4_2:31087582-31087601 | None:intergenic | 15.0% |
| !! | AAGTAAATAAATACTCTATT+TGG | - | chr4_2:31087924-31087943 | None:intergenic | 15.0% |
| !! | TTAAATCATTGCATATTTAT+CGG | - | chr4_2:31089170-31089189 | None:intergenic | 15.0% |
| !!! | TGTTTTTAGTTGAAAACAAT+TGG | + | chr4_2:31083225-31083244 | Msa0597830:intron | 20.0% |
| !!! | TTTTTAGTTTAATGTTCCTT+TGG | + | chr4_2:31083258-31083277 | Msa0597830:intron | 20.0% |
| !! | TAATCAATTTGAATGTAATC+CGG | + | chr4_2:31083399-31083418 | Msa0597830:intron | 20.0% |
| !! | AAAACAACAAAACATTGAAA+AGG | - | chr4_2:31083541-31083560 | None:intergenic | 20.0% |
| !! | TAAAAAAATGTTGTCAATTG+CGG | - | chr4_2:31083742-31083761 | None:intergenic | 20.0% |
| !!! | AAAATGCTGATTTTGTTTTT+GGG | + | chr4_2:31083777-31083796 | Msa0597830:intron | 20.0% |
| !! | ATATATGTCCATAGAAAATT+GGG | - | chr4_2:31085125-31085144 | None:intergenic | 20.0% |
| !! | AAAACCATTACAGTTTAAAA+TGG | - | chr4_2:31085152-31085171 | None:intergenic | 20.0% |
| !! | TCATGAAAATAATTGAGAAA+TGG | + | chr4_2:31085175-31085194 | Msa0597830:intron | 20.0% |
| !! | GAAATTTATACACAATATTC+AGG | + | chr4_2:31085553-31085572 | Msa0597830:intron | 20.0% |
| !!! | TGTAATTTTTATGATACTCA+TGG | + | chr4_2:31085651-31085670 | Msa0597830:intron | 20.0% |
| !! | AAAATACCATTTAATTCTGA+GGG | - | chr4_2:31085887-31085906 | None:intergenic | 20.0% |
| !!! | TCAGAATTAAATGGTATTTT+CGG | + | chr4_2:31085887-31085906 | Msa0597830:CDS | 20.0% |
| !!! | TACAATTTTCAAAAGGAATA+AGG | + | chr4_2:31086437-31086456 | Msa0597830:intron | 20.0% |
| !!! | TAATTTTTTCTTGGTTTTGT+GGG | - | chr4_2:31086579-31086598 | None:intergenic | 20.0% |
| !!! | TTAATTTTTTCTTGGTTTTG+TGG | - | chr4_2:31086580-31086599 | None:intergenic | 20.0% |
| !! | AATAGATATGATATCAACTT+CGG | - | chr4_2:31087041-31087060 | None:intergenic | 20.0% |
| !!! | AATTGATATATTTTTTCAGG+CGG | + | chr4_2:31087188-31087207 | Msa0597830:intron | 20.0% |
| !! | GAAGATCTAATTAAAAAGAA+TGG | + | chr4_2:31087728-31087747 | Msa0597830:intron | 20.0% |
| !! | ATCTAATTAAAAAGAATGGA+TGG | + | chr4_2:31087732-31087751 | Msa0597830:intron | 20.0% |
| !! | ACCTGTTAAATTACATTTAT+TGG | + | chr4_2:31087968-31087987 | Msa0597830:intron | 20.0% |
| !!! | ATTTAAAATTACTATTCTGC+AGG | - | chr4_2:31088385-31088404 | None:intergenic | 20.0% |
| !! | AAAAACTATCTTGTAAGATA+GGG | + | chr4_2:31088714-31088733 | Msa0597830:three_prime_UTR | 20.0% |
| !!! | AGACAATTTTGTTTTCGTTT+TGG | - | chr4_2:31082864-31082883 | None:intergenic | 25.0% |
| ! | AATTGAAGAGAATGAAAAAG+AGG | - | chr4_2:31083104-31083123 | None:intergenic | 25.0% |
| ! | CATGAAAATAAGCGAAAAAA+TGG | - | chr4_2:31083183-31083202 | None:intergenic | 25.0% |
| ! | ACAATAACAAAACCCTAATT+CGG | - | chr4_2:31083379-31083398 | None:intergenic | 25.0% |
| ! | AATCAATTTGAATGTAATCC+GGG | + | chr4_2:31083400-31083419 | Msa0597830:intron | 25.0% |
| !! | TAGATTAACATTTTCTCCTT+CGG | - | chr4_2:31083497-31083516 | None:intergenic | 25.0% |
| ! | TATATTCTCATATGTAAGTC+TGG | + | chr4_2:31083591-31083610 | Msa0597830:intron | 25.0% |
| !! | AAATGCTATTTAGTACAAAG+TGG | + | chr4_2:31083672-31083691 | Msa0597830:intron | 25.0% |
| ! | AAAAAAATGTTGTCAATTGC+GGG | - | chr4_2:31083741-31083760 | None:intergenic | 25.0% |
| !!! | GAAAATGCTGATTTTGTTTT+TGG | + | chr4_2:31083776-31083795 | Msa0597830:intron | 25.0% |
| !! | CTTTAAATTTCTGAGAATCA+CGG | - | chr4_2:31083993-31084012 | None:intergenic | 25.0% |
| !! | TTTATAGTTTCTGTTACTTG+AGG | - | chr4_2:31084042-31084061 | None:intergenic | 25.0% |
| ! | ACAGAAACTATAAAAGAGAA+TGG | + | chr4_2:31084048-31084067 | Msa0597830:CDS | 25.0% |
| ! | ATTTAACCAAGACTTGAAAA+AGG | + | chr4_2:31084272-31084291 | Msa0597830:CDS | 25.0% |
| ! | ATAAATTCCCAGAGTTAATA+AGG | - | chr4_2:31084347-31084366 | None:intergenic | 25.0% |
| !! | TTGATCTTTTCTGATTACAA+GGG | - | chr4_2:31084646-31084665 | None:intergenic | 25.0% |
| !! | TTTGATCTTTTCTGATTACA+AGG | - | chr4_2:31084647-31084666 | None:intergenic | 25.0% |
| !!! | TACTGTGTAATTTTTTAGGT+TGG | + | chr4_2:31084687-31084706 | Msa0597830:intron | 25.0% |
| ! | CATATATGTCCATAGAAAAT+TGG | - | chr4_2:31085126-31085145 | None:intergenic | 25.0% |
| !! | ATTTTCTATGGACATATATG+TGG | + | chr4_2:31085126-31085145 | Msa0597830:intron | 25.0% |
| ! | TGAGAAATGGTTATGTTTAT+AGG | + | chr4_2:31085188-31085207 | Msa0597830:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | - | chr4_2:31085229-31085248 | None:intergenic | 25.0% |
| ! | TAGAAACTCTCAGTATATAT+GGG | - | chr4_2:31085351-31085370 | None:intergenic | 25.0% |
| ! | ATAGAAACTCTCAGTATATA+TGG | - | chr4_2:31085352-31085371 | None:intergenic | 25.0% |
| ! | ATATATACTGAGAGTTTCTA+TGG | + | chr4_2:31085351-31085370 | Msa0597830:intron | 25.0% |
| ! | TTGAGTAGAAAAGCTATTAA+AGG | - | chr4_2:31085459-31085478 | None:intergenic | 25.0% |
| ! | AACAAGAACATATAAGAGAA+AGG | - | chr4_2:31085491-31085510 | None:intergenic | 25.0% |
| ! | TTTATTCCCTCAGAATTAAA+TGG | + | chr4_2:31085878-31085897 | Msa0597830:CDS | 25.0% |
| ! | GAAAATACCATTTAATTCTG+AGG | - | chr4_2:31085888-31085907 | None:intergenic | 25.0% |
| !! | AAATTTTACAACATCTTGGT+GGG | - | chr4_2:31086007-31086026 | None:intergenic | 25.0% |
| !! | AAAATTTTACAACATCTTGG+TGG | - | chr4_2:31086008-31086027 | None:intergenic | 25.0% |
| !! | ACGAAAATTTTACAACATCT+TGG | - | chr4_2:31086011-31086030 | None:intergenic | 25.0% |
| !! | TAGCACTTACAATTTTCAAA+AGG | + | chr4_2:31086430-31086449 | Msa0597830:intron | 25.0% |
| ! | CAAAGCTAATACTTAAATTG+AGG | - | chr4_2:31086783-31086802 | None:intergenic | 25.0% |
| ! | AGCTAGAAATAATACTCAAA+GGG | + | chr4_2:31086899-31086918 | Msa0597830:intron | 25.0% |
| !! | GAAAAAAAGGTATATAAAGC+AGG | - | chr4_2:31086927-31086946 | None:intergenic | 25.0% |
| ! | TCATATCTATTACTAAGATG+TGG | + | chr4_2:31087050-31087069 | Msa0597830:intron | 25.0% |
| !!! | ATTGATATATTTTTTCAGGC+GGG | + | chr4_2:31087189-31087208 | Msa0597830:intron | 25.0% |
| ! | TCAATCAAATAACTTTCTCT+TGG | + | chr4_2:31087418-31087437 | Msa0597830:intron | 25.0% |
| ! | TAATTCCCACGAAAAAAATT+AGG | - | chr4_2:31087519-31087538 | None:intergenic | 25.0% |
| !!! | CTCTAATCAAATTGCTTTTA+AGG | + | chr4_2:31087602-31087621 | Msa0597830:intron | 25.0% |
| ! | TAAGGCTTCACAAAATAATT+AGG | + | chr4_2:31087620-31087639 | Msa0597830:intron | 25.0% |
| !!! | CTTTTTAATTAGATCTTCCA+GGG | - | chr4_2:31087726-31087745 | None:intergenic | 25.0% |
| !!! | TCTTTTTAATTAGATCTTCC+AGG | - | chr4_2:31087727-31087746 | None:intergenic | 25.0% |
| !!! | TGCATTGATTGAAACTATAT+TGG | + | chr4_2:31087809-31087828 | Msa0597830:intron | 25.0% |
| ! | GCCAATAAATGTAATTTAAC+AGG | - | chr4_2:31087972-31087991 | None:intergenic | 25.0% |
| ! | CAGTTTATTAGTTGTTAAGT+TGG | - | chr4_2:31088162-31088181 | None:intergenic | 25.0% |
| !!! | ACCAAATATGATAATGCTTT+TGG | + | chr4_2:31088309-31088328 | Msa0597830:intron | 25.0% |
| !!! | CCAAATATGATAATGCTTTT+GGG | + | chr4_2:31088310-31088329 | Msa0597830:intron | 25.0% |
| ! | GTAATGATTGAAAGACATAA+TGG | + | chr4_2:31088429-31088448 | Msa0597830:intron | 25.0% |
| ! | GAAAAACTATCTTGTAAGAT+AGG | + | chr4_2:31088713-31088732 | Msa0597830:three_prime_UTR | 25.0% |
| !!! | TTTTCGTTTTGGTTTTTGAG+GGG | - | chr4_2:31082853-31082872 | None:intergenic | 30.0% |
| !!! | GTTTTCGTTTTGGTTTTTGA+GGG | - | chr4_2:31082854-31082873 | None:intergenic | 30.0% |
| !!! | TGTTTTCGTTTTGGTTTTTG+AGG | - | chr4_2:31082855-31082874 | None:intergenic | 30.0% |
| AGAAGAAGAAGATGAAGAAA+GGG | - | chr4_2:31082912-31082931 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGATGAAGAA+AGG | - | chr4_2:31082913-31082932 | None:intergenic | 30.0% | |
| TGGTAATTCAAAAGCTCAAA+CGG | + | chr4_2:31082949-31082968 | Msa0597830:five_prime_UTR | 30.0% | |
| ! | AAATCAAAAGGTAGGGTTTT+TGG | - | chr4_2:31083053-31083072 | None:intergenic | 30.0% |
| AGTTGAAAACAATTGGTCAA+AGG | + | chr4_2:31083232-31083251 | Msa0597830:intron | 30.0% | |
| AAATAACAAGCTCAAACCAA+AGG | - | chr4_2:31083277-31083296 | None:intergenic | 30.0% | |
| !!! | TGGTTTGAGCTTGTTATTTT+TGG | + | chr4_2:31083278-31083297 | Msa0597830:intron | 30.0% |
| CTTGTGATGAATCATGAATT+AGG | + | chr4_2:31083349-31083368 | Msa0597830:intron | 30.0% | |
| TGAATTAGGAATACCGAATT+AGG | + | chr4_2:31083363-31083382 | Msa0597830:intron | 30.0% | |
| GAATTAGGAATACCGAATTA+GGG | + | chr4_2:31083364-31083383 | Msa0597830:intron | 30.0% | |
| ATCAATTTGAATGTAATCCG+GGG | + | chr4_2:31083401-31083420 | Msa0597830:intron | 30.0% | |
| !!! | CTGATTTTGTTTTTGGGTTT+GGG | + | chr4_2:31083783-31083802 | Msa0597830:intron | 30.0% |
| CGTGATTCTCAGAAATTTAA+AGG | + | chr4_2:31083991-31084010 | Msa0597830:CDS | 30.0% | |
| CAGAAATTTAAAGGAGTGAA+CGG | + | chr4_2:31084000-31084019 | Msa0597830:CDS | 30.0% | |
| GTTACACCAATTGATGAAAA+TGG | + | chr4_2:31084147-31084166 | Msa0597830:CDS | 30.0% | |
| TTGAAGAACGTGTTCAAAAA+TGG | + | chr4_2:31084222-31084241 | Msa0597830:CDS | 30.0% | |
| !!! | GATACAGATTCTTTTGAGTT+TGG | + | chr4_2:31084786-31084805 | Msa0597830:CDS | 30.0% |
| ! | TGTCCTGAAAAATTTTACTC+CGG | + | chr4_2:31084839-31084858 | Msa0597830:intron | 30.0% |
| AATTAAATTGTCACCAACCT+TGG | - | chr4_2:31084891-31084910 | None:intergenic | 30.0% | |
| TTCGACTAAAAAAGTGGTTA+TGG | - | chr4_2:31085025-31085044 | None:intergenic | 30.0% | |
| AATCACAATCAGTATGTTTC+TGG | + | chr4_2:31085066-31085085 | Msa0597830:intron | 30.0% | |
| ! | CACACCTTCTAAAAAATAAG+TGG | - | chr4_2:31085230-31085249 | None:intergenic | 30.0% |
| TTATAGCAACATACACATCA+AGG | + | chr4_2:31085250-31085269 | Msa0597830:intron | 30.0% | |
| !!! | TTAGAAGCCCTCTTTTTTTT+AGG | + | chr4_2:31085412-31085431 | Msa0597830:intron | 30.0% |
| GCAAACTCCTAAAAAAAAGA+GGG | - | chr4_2:31085422-31085441 | None:intergenic | 30.0% | |
| TGCAAACTCCTAAAAAAAAG+AGG | - | chr4_2:31085423-31085442 | None:intergenic | 30.0% | |
| GTATAAATTTCGAGACATGA+TGG | - | chr4_2:31085544-31085563 | None:intergenic | 30.0% | |
| TTTCTTAGGTATGATGTGAT+TGG | + | chr4_2:31085614-31085633 | Msa0597830:intron | 30.0% | |
| !!! | ATCTTTTCTAGTTTCTTCTG+TGG | + | chr4_2:31085793-31085812 | Msa0597830:CDS | 30.0% |
| GTAACAGCAGATTTATTCTT+TGG | - | chr4_2:31085845-31085864 | None:intergenic | 30.0% | |
| AGAATAAATCTGCTGTTACA+AGG | + | chr4_2:31085846-31085865 | Msa0597830:CDS | 30.0% | |
| ! | GAATTAAATGGTATTTTCGG+AGG | + | chr4_2:31085890-31085909 | Msa0597830:CDS | 30.0% |
| CTTTAGTTATCACCAAACTT+TGG | - | chr4_2:31085922-31085941 | None:intergenic | 30.0% | |
| ! | CAAAGTTTGGTGATAACTAA+AGG | + | chr4_2:31085920-31085939 | Msa0597830:CDS | 30.0% |
| ATAAAAAATGGCAATGAAGG+GGG | - | chr4_2:31086122-31086141 | None:intergenic | 30.0% | |
| GATAAAAAATGGCAATGAAG+GGG | - | chr4_2:31086123-31086142 | None:intergenic | 30.0% | |
| CGATAAAAAATGGCAATGAA+GGG | - | chr4_2:31086124-31086143 | None:intergenic | 30.0% | |
| !!! | CCTTCATTGCCATTTTTTAT+CGG | + | chr4_2:31086122-31086141 | Msa0597830:intron | 30.0% |
| TTCAAAAGGAATAAGGACAA+TGG | + | chr4_2:31086444-31086463 | Msa0597830:intron | 30.0% | |
| GTAAGAAATGCCAACTATTT+AGG | - | chr4_2:31086506-31086525 | None:intergenic | 30.0% | |
| TTTCTTACTCGAAAAAGTCT+TGG | + | chr4_2:31086518-31086537 | Msa0597830:intron | 30.0% | |
| ! | ATACCCAACACTTCAATTTT+AGG | + | chr4_2:31086549-31086568 | Msa0597830:intron | 30.0% |
| ! | ATACCCAACACTTCAATTTT+GGG | - | chr4_2:31086549-31086568 | None:intergenic | 30.0% |
| AATACTTAAATTGAGGTAGG+TGG | - | chr4_2:31086776-31086795 | None:intergenic | 30.0% | |
| GCTAATACTTAAATTGAGGT+AGG | - | chr4_2:31086779-31086798 | None:intergenic | 30.0% | |
| AATACTTAAATTGAGGTAGG+TGG | - | chr4_2:31086776-31086795 | None:intergenic | 30.0% | |
| GCTAATACTTAAATTGAGGT+AGG | - | chr4_2:31086779-31086798 | None:intergenic | 30.0% | |
| GAGCTAGAAATAATACTCAA+AGG | + | chr4_2:31086898-31086917 | Msa0597830:intron | 30.0% | |
| GCTAGAAATAATACTCAAAG+GGG | + | chr4_2:31086900-31086919 | Msa0597830:intron | 30.0% | |
| TCGGTCTAACAATAACATAA+AGG | - | chr4_2:31087022-31087041 | None:intergenic | 30.0% | |
| TGATATCAACTACTAAGATG+TGG | - | chr4_2:31087094-31087113 | None:intergenic | 30.0% | |
| !!! | TTGATATATTTTTTCAGGCG+GGG | + | chr4_2:31087190-31087209 | Msa0597830:intron | 30.0% |
| AGGTGCAATATCATTACTTT+AGG | - | chr4_2:31087249-31087268 | None:intergenic | 30.0% | |
| TTTCCTCTTGAATTGGTATT+GGG | + | chr4_2:31087324-31087343 | Msa0597830:CDS | 30.0% | |
| GATATGTTTACCTCAGTATA+TGG | - | chr4_2:31087369-31087388 | None:intergenic | 30.0% | |
| ! | GATTTTCAAAATGCAGTAAC+TGG | - | chr4_2:31087400-31087419 | None:intergenic | 30.0% |
| !!! | TACACTCCTAATTTTTTTCG+TGG | + | chr4_2:31087510-31087529 | Msa0597830:intron | 30.0% |
| !!! | ACACTCCTAATTTTTTTCGT+GGG | + | chr4_2:31087511-31087530 | Msa0597830:intron | 30.0% |
| ATTGAAACTATATTGGCCAA+GGG | + | chr4_2:31087816-31087835 | Msa0597830:intron | 30.0% | |
| ! | CTATTTGGTGAAAAAACTTG+TGG | - | chr4_2:31087909-31087928 | None:intergenic | 30.0% |
| !!! | TTACTTTTTGAATGCTTCCT+TGG | + | chr4_2:31087938-31087957 | Msa0597830:intron | 30.0% |
| CTAACCAAAAAAAATCTGCT+GGG | + | chr4_2:31088190-31088209 | Msa0597830:intron | 30.0% | |
| !! | CCCAAAAGCATTATCATATT+TGG | - | chr4_2:31088313-31088332 | None:intergenic | 30.0% |
| TACAATTACTCATCATGGAA+GGG | + | chr4_2:31088500-31088519 | Msa0597830:CDS | 30.0% | |
| !! | CTTTGCTATTGCAACAAATA+AGG | + | chr4_2:31088599-31088618 | Msa0597830:CDS | 30.0% |
| CTGTTTGTAGAAAAGAACAT+AGG | - | chr4_2:31088640-31088659 | None:intergenic | 30.0% | |
| ATGCGAGTGATTATTCATTA+AGG | + | chr4_2:31088769-31088788 | Msa0597830:three_prime_UTR | 30.0% | |
| ! | TTTTCATGGTCTAGATAACA+AGG | - | chr4_2:31088863-31088882 | None:intergenic | 30.0% |
| ATCAACAATCAACACATCAA+AGG | - | chr4_2:31089018-31089037 | None:intergenic | 30.0% | |
| ! | TATTGTTGCAGTCTTTGTTT+AGG | + | chr4_2:31089053-31089072 | Msa0597830:three_prime_UTR | 30.0% |
| !!! | TTTTGGTTTTTGAGGGGTTA+GGG | - | chr4_2:31082847-31082866 | None:intergenic | 35.0% |
| GGTAATTCAAAAGCTCAAAC+GGG | + | chr4_2:31082950-31082969 | Msa0597830:five_prime_UTR | 35.0% | |
| GTAATTCAAAAGCTCAAACG+GGG | + | chr4_2:31082951-31082970 | Msa0597830:five_prime_UTR | 35.0% | |
| AGAGAGAGAGAAGTTAACAA+AGG | - | chr4_2:31082983-31083002 | None:intergenic | 35.0% | |
| CTGTAATTGAAGACATGAAG+AGG | - | chr4_2:31083010-31083029 | None:intergenic | 35.0% | |
| AGGAGGAAAATCAAAAGGTA+GGG | - | chr4_2:31083060-31083079 | None:intergenic | 35.0% | |
| AAGGAGGAAAATCAAAAGGT+AGG | - | chr4_2:31083061-31083080 | None:intergenic | 35.0% | |
| GAGAAAGGAGGAAAATCAAA+AGG | - | chr4_2:31083065-31083084 | None:intergenic | 35.0% | |
| CAAGGTTTGTGTATAGAGAA+AGG | - | chr4_2:31083080-31083099 | None:intergenic | 35.0% | |
| AGAGAATGAAAAAGAGGACA+AGG | - | chr4_2:31083098-31083117 | None:intergenic | 35.0% | |
| AAGCGAAAAAATGGAACCTT+AGG | - | chr4_2:31083174-31083193 | None:intergenic | 35.0% | |
| !!! | GCTGATTTTGTTTTTGGGTT+TGG | + | chr4_2:31083782-31083801 | Msa0597830:intron | 35.0% |
| AAGATGAAACCAGATCATTG+TGG | + | chr4_2:31083836-31083855 | Msa0597830:CDS | 35.0% | |
| AGATGAAACCAGATCATTGT+GGG | + | chr4_2:31083837-31083856 | Msa0597830:CDS | 35.0% | |
| !!! | CTTTTTTACCCACAATGATC+TGG | - | chr4_2:31083848-31083867 | None:intergenic | 35.0% |
| AGCACTACTAATTTCTCCAT+CGG | + | chr4_2:31084072-31084091 | Msa0597830:CDS | 35.0% | |
| TTTGCACTAGTGATACTTGA+GGG | - | chr4_2:31084099-31084118 | None:intergenic | 35.0% | |
| ! | GCAGTACCATTTTCATCAAT+TGG | - | chr4_2:31084156-31084175 | None:intergenic | 35.0% |
| CCAAACTCAAATTCGTAAAC+TGG | - | chr4_2:31084182-31084201 | None:intergenic | 35.0% | |
| ! | CCAGTTTACGAATTTGAGTT+TGG | + | chr4_2:31084179-31084198 | Msa0597830:CDS | 35.0% |
| AACGTGTTCAAAAATGGTAG+TGG | + | chr4_2:31084228-31084247 | Msa0597830:CDS | 35.0% | |
| !! | ACTTGAAAAAGGCACCTAAT+GGG | + | chr4_2:31084283-31084302 | Msa0597830:CDS | 35.0% |
| ! | TCAGCAAATGCTTTTAGTGT+GGG | - | chr4_2:31084717-31084736 | None:intergenic | 35.0% |
| ! | TTCTTTAAGTTTACACCGCT+TGG | - | chr4_2:31084762-31084781 | None:intergenic | 35.0% |
| GGACATCTTCAAACATAACA+GGG | - | chr4_2:31084824-31084843 | None:intergenic | 35.0% | |
| AGGACATCTTCAAACATAAC+AGG | - | chr4_2:31084825-31084844 | None:intergenic | 35.0% | |
| ! | CATCCGGAGTAAAATTTTTC+AGG | - | chr4_2:31084845-31084864 | None:intergenic | 35.0% |
| ! | TATCTGAAAAGTCTTGTCCT+GGG | - | chr4_2:31084994-31085013 | None:intergenic | 35.0% |
| ! | ATATCTGAAAAGTCTTGTCC+TGG | - | chr4_2:31084995-31085014 | None:intergenic | 35.0% |
| CAACGATTCGACTAAAAAAG+TGG | - | chr4_2:31085031-31085050 | None:intergenic | 35.0% | |
| TGATTGTGATTGTGATCTAG+AGG | - | chr4_2:31085057-31085076 | None:intergenic | 35.0% | |
| CCATAGAAAATTGGGCAATT+AGG | - | chr4_2:31085117-31085136 | None:intergenic | 35.0% | |
| ! | CCTAATTGCCCAATTTTCTA+TGG | + | chr4_2:31085114-31085133 | Msa0597830:intron | 35.0% |
| !! | GTGGCCATTTTAAACTGTAA+TGG | + | chr4_2:31085145-31085164 | Msa0597830:intron | 35.0% |
| !!! | ACGCCCACTTATTTTTTAGA+AGG | + | chr4_2:31085223-31085242 | Msa0597830:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | + | chr4_2:31085310-31085329 | Msa0597830:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr4_2:31085316-31085335 | None:intergenic | 35.0% |
| ! | TGCAATGCACTCATTTTCTT+AGG | + | chr4_2:31085600-31085619 | Msa0597830:intron | 35.0% |
| ! | GATGTGATTGGTTGTGATAT+TGG | + | chr4_2:31085626-31085645 | Msa0597830:intron | 35.0% |
| TACAAAGCTCAGAAATTCCT+GGG | - | chr4_2:31085708-31085727 | None:intergenic | 35.0% | |
| TTACAAAGCTCAGAAATTCC+TGG | - | chr4_2:31085709-31085728 | None:intergenic | 35.0% | |
| ! | GGAATTTCTGAGCTTTGTAA+TGG | + | chr4_2:31085709-31085728 | Msa0597830:CDS | 35.0% |
| TTCTGTGGAAGATGATGAAT+GGG | + | chr4_2:31085808-31085827 | Msa0597830:CDS | 35.0% | |
| ATGATGAATGGGAAACAGTA+GGG | + | chr4_2:31085819-31085838 | Msa0597830:CDS | 35.0% | |
| ! | TTGGTGATAACTAAAGGTAC+AGG | + | chr4_2:31085926-31085945 | Msa0597830:intron | 35.0% |
| TTACAGCAAGGGAAAAAATG+TGG | - | chr4_2:31086095-31086114 | None:intergenic | 35.0% | |
| CCGATAAAAAATGGCAATGA+AGG | - | chr4_2:31086125-31086144 | None:intergenic | 35.0% | |
| !!! | CCATTTTTTATCGGAGCTTT+GGG | + | chr4_2:31086131-31086150 | Msa0597830:intron | 35.0% |
| TTACTCGAAAAAGTCTTGGT+TGG | + | chr4_2:31086522-31086541 | Msa0597830:intron | 35.0% | |
| TACTCGAAAAAGTCTTGGTT+GGG | + | chr4_2:31086523-31086542 | Msa0597830:intron | 35.0% | |
| ! | GTGCCTAAAATTGAAGTGTT+GGG | - | chr4_2:31086555-31086574 | None:intergenic | 35.0% |
| TGTGCCTAAAATTGAAGTGT+TGG | - | chr4_2:31086556-31086575 | None:intergenic | 35.0% | |
| ! | CATACCCAACACTTCAATTT+TGG | - | chr4_2:31086548-31086567 | None:intergenic | 35.0% |
| AAGAAGAGAAAGTCTTGGTT+GGG | - | chr4_2:31086709-31086728 | None:intergenic | 35.0% | |
| TAAGAAGAGAAAGTCTTGGT+TGG | - | chr4_2:31086710-31086729 | None:intergenic | 35.0% | |
| AGAGTAAGAAGAGAAAGTCT+TGG | - | chr4_2:31086714-31086733 | None:intergenic | 35.0% | |
| AAGACTTTCTCTTCTTACTC+TGG | + | chr4_2:31086713-31086732 | Msa0597830:intron | 35.0% | |
| AGACTTTCTCTTCTTACTCT+GGG | + | chr4_2:31086714-31086733 | Msa0597830:intron | 35.0% | |
| ! | TGTTAGGTGTCATATTTGGT+AGG | + | chr4_2:31086738-31086757 | Msa0597830:intron | 35.0% |
| ! | TGCAGATAAAGGTATGAACT+GGG | - | chr4_2:31086865-31086884 | None:intergenic | 35.0% |
| ! | ATGCAGATAAAGGTATGAAC+TGG | - | chr4_2:31086866-31086885 | None:intergenic | 35.0% |
| TACTAGACAGCAATGTACTT+TGG | + | chr4_2:31087127-31087146 | Msa0597830:intron | 35.0% | |
| ! | ATATTGCACCTAATGCGTTT+TGG | + | chr4_2:31087258-31087277 | Msa0597830:CDS | 35.0% |
| TTCCATAACCAAAACGCATT+AGG | - | chr4_2:31087269-31087288 | None:intergenic | 35.0% | |
| CTTTCCTCTTGAATTGGTAT+TGG | + | chr4_2:31087323-31087342 | Msa0597830:CDS | 35.0% | |
| TGGATTGTGATGATAAATGC+TGG | + | chr4_2:31087438-31087457 | Msa0597830:intron | 35.0% | |
| TGTACCATTGAGAATAAAGC+AGG | - | chr4_2:31087494-31087513 | None:intergenic | 35.0% | |
| TTCGTGGGAATTAAATTCAC+AGG | + | chr4_2:31087526-31087545 | Msa0597830:intron | 35.0% | |
| CGTCACATAATTTGAACGAA+AGG | - | chr4_2:31087650-31087669 | None:intergenic | 35.0% | |
| GATTGAAACTATATTGGCCA+AGG | + | chr4_2:31087815-31087834 | Msa0597830:intron | 35.0% | |
| GGCTCAATTGATAAGTTACT+TGG | + | chr4_2:31087989-31088008 | Msa0597830:intron | 35.0% | |
| !!! | CCAGCAGATTTTTTTTGGTT+AGG | - | chr4_2:31088192-31088211 | None:intergenic | 35.0% |
| CCTAACCAAAAAAAATCTGC+TGG | + | chr4_2:31088189-31088208 | Msa0597830:intron | 35.0% | |
| ! | TTAAGAGTTTGGAGTCTTGA+TGG | + | chr4_2:31088407-31088426 | Msa0597830:intron | 35.0% |
| !! | ACTCGTTTTTATTCTTCTGC+AGG | + | chr4_2:31088455-31088474 | Msa0597830:intron | 35.0% |
| !! | CTCGTTTTTATTCTTCTGCA+GGG | + | chr4_2:31088456-31088475 | Msa0597830:intron | 35.0% |
| GTTGCTACAATTACTCATCA+TGG | + | chr4_2:31088495-31088514 | Msa0597830:CDS | 35.0% | |
| CTACAATTACTCATCATGGA+AGG | + | chr4_2:31088499-31088518 | Msa0597830:CDS | 35.0% | |
| AAAGGGAGTAGATATCAACA+GGG | - | chr4_2:31088683-31088702 | None:intergenic | 35.0% | |
| AAAAGGGAGTAGATATCAAC+AGG | - | chr4_2:31088684-31088703 | None:intergenic | 35.0% | |
| ! | GTTTTTCTCCAAGTGCAAAA+GGG | - | chr4_2:31088700-31088719 | None:intergenic | 35.0% |
| ! | AGTTTTTCTCCAAGTGCAAA+AGG | - | chr4_2:31088701-31088720 | None:intergenic | 35.0% |
| ! | CAGTTGATTAATGTTTTGCC+TGG | + | chr4_2:31088741-31088760 | Msa0597830:three_prime_UTR | 35.0% |
| TCTTATCACACACTCTAGAT+TGG | - | chr4_2:31088815-31088834 | None:intergenic | 35.0% | |
| ! | TAGGACTGCAAAACTTTTCA+TGG | - | chr4_2:31088877-31088896 | None:intergenic | 35.0% |
| ! | AAGTTTTGCAGTCCTAGTTT+AGG | + | chr4_2:31088881-31088900 | Msa0597830:three_prime_UTR | 35.0% |
| TTCACTAGCTCGAAAGAAAT+TGG | + | chr4_2:31088965-31088984 | Msa0597830:three_prime_UTR | 35.0% | |
| TCACTAGCTCGAAAGAAATT+GGG | + | chr4_2:31088966-31088985 | Msa0597830:three_prime_UTR | 35.0% | |
| GCAGATCAACTTTAGTTGTT+AGG | + | chr4_2:31089089-31089108 | Msa0597830:three_prime_UTR | 35.0% | |
| TAGGGTTACGAAAAGACGAA+AGG | - | chr4_2:31082829-31082848 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTTTTTGAGGGGTT+AGG | - | chr4_2:31082848-31082867 | None:intergenic | 40.0% |
| GGTTTGTGTATAGAGAAAGG+AGG | - | chr4_2:31083077-31083096 | None:intergenic | 40.0% | |
| TATTGCTGAAGAGATGGAAG+AGG | - | chr4_2:31083143-31083162 | None:intergenic | 40.0% | |
| TGCTCATATTGCTGAAGAGA+TGG | - | chr4_2:31083149-31083168 | None:intergenic | 40.0% | |
| CAGCAATATGAGCAATCCTA+AGG | + | chr4_2:31083155-31083174 | Msa0597830:exon | 40.0% | |
| ATTTGAATGTAATCCGGGGT+TGG | + | chr4_2:31083405-31083424 | Msa0597830:intron | 40.0% | |
| TTTGAATGTAATCCGGGGTT+GGG | + | chr4_2:31083406-31083425 | Msa0597830:intron | 40.0% | |
| !!! | AGCTCAACTGGTTTTAGCTA+AGG | + | chr4_2:31083430-31083449 | Msa0597830:intron | 40.0% |
| !!! | GCTCAACTGGTTTTAGCTAA+GGG | + | chr4_2:31083431-31083450 | Msa0597830:intron | 40.0% |
| !!! | CTGGTTTTAGCTAAGGGAAA+AGG | + | chr4_2:31083437-31083456 | Msa0597830:intron | 40.0% |
| TTAGCTAAGGGAAAAGGAGT+TGG | + | chr4_2:31083443-31083462 | Msa0597830:intron | 40.0% | |
| ! | TTAACATTTTCTCCTTCGGC+CGG | - | chr4_2:31083493-31083512 | None:intergenic | 40.0% |
| !! | AGTCTGGTGTTGTCAAATAG+CGG | + | chr4_2:31083607-31083626 | Msa0597830:intron | 40.0% |
| AGCATTTCGCAGAACAATAG+TGG | - | chr4_2:31083659-31083678 | None:intergenic | 40.0% | |
| GAGAAGAATCAGCTGCAATT+TGG | + | chr4_2:31083895-31083914 | Msa0597830:CDS | 40.0% | |
| !! | TTTGGTGCTTTCGGTGAATT+TGG | - | chr4_2:31083958-31083977 | None:intergenic | 40.0% |
| ! | AATTTCTGAGAATCACGGAG+AGG | - | chr4_2:31083988-31084007 | None:intergenic | 40.0% |
| GTTTGCACTAGTGATACTTG+AGG | - | chr4_2:31084100-31084119 | None:intergenic | 40.0% | |
| GTTCTTCAAACTTTCAGCCT+CGG | - | chr4_2:31084211-31084230 | None:intergenic | 40.0% | |
| !! | GTGTTCAAAAATGGTAGTGG+TGG | + | chr4_2:31084231-31084250 | Msa0597830:CDS | 40.0% |
| !!! | TAGGTGCCTTTTTCAAGTCT+TGG | - | chr4_2:31084281-31084300 | None:intergenic | 40.0% |
| !! | GACTTGAAAAAGGCACCTAA+TGG | + | chr4_2:31084282-31084301 | Msa0597830:CDS | 40.0% |
| ! | TCCTTTTGTTCAGCTTTTGC+AGG | + | chr4_2:31084407-31084426 | Msa0597830:CDS | 40.0% |
| TCCTGCAAAAGCTGAACAAA+AGG | - | chr4_2:31084411-31084430 | None:intergenic | 40.0% | |
| AGGATAGACTACCTTAGGAA+TGG | - | chr4_2:31084448-31084467 | None:intergenic | 40.0% | |
| GTTGTTGATATATGCAGCAG+AGG | - | chr4_2:31084468-31084487 | None:intergenic | 40.0% | |
| ! | CTCAGCAAATGCTTTTAGTG+TGG | - | chr4_2:31084718-31084737 | None:intergenic | 40.0% |
| ACTCAATTTGACATGCCAAG+CGG | + | chr4_2:31084744-31084763 | Msa0597830:CDS | 40.0% | |
| ! | GAAATGCTATTTGGCACATC+CGG | - | chr4_2:31084861-31084880 | None:intergenic | 40.0% |
| GATGTGCCAAATAGCATTTC+AGG | + | chr4_2:31084861-31084880 | Msa0597830:intron | 40.0% | |
| GGTCTTCCTGAAATGCTATT+TGG | - | chr4_2:31084870-31084889 | None:intergenic | 40.0% | |
| ATAGCATTTCAGGAAGACCA+AGG | + | chr4_2:31084871-31084890 | Msa0597830:intron | 40.0% | |
| ! | CAAGTCTTATCCTACTACGT+GGG | - | chr4_2:31084942-31084961 | None:intergenic | 40.0% |
| TGGGCAATTAGGATGCATAT+AGG | - | chr4_2:31085106-31085125 | None:intergenic | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | + | chr4_2:31085309-31085328 | Msa0597830:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr4_2:31085317-31085336 | None:intergenic | 40.0% |
| GACGAATTACTGAAGCTTGA+AGG | + | chr4_2:31085743-31085762 | Msa0597830:CDS | 40.0% | |
| GGACAGTCTTCAAGTCTTAA+TGG | + | chr4_2:31085764-31085783 | Msa0597830:CDS | 40.0% | |
| CTTCTGTGGAAGATGATGAA+TGG | + | chr4_2:31085807-31085826 | Msa0597830:CDS | 40.0% | |
| GATGATGAATGGGAAACAGT+AGG | + | chr4_2:31085818-31085837 | Msa0597830:CDS | 40.0% | |
| ! | ATCTTGGTGGGTATATGACA+AGG | - | chr4_2:31085995-31086014 | None:intergenic | 40.0% |
| !!! | GCCATTTTTTATCGGAGCTT+TGG | + | chr4_2:31086130-31086149 | Msa0597830:intron | 40.0% |
| CCCAAAGCTCCGATAAAAAA+TGG | - | chr4_2:31086134-31086153 | None:intergenic | 40.0% | |
| !! | ATCGGAGCTTTGGGATAAAA+AGG | + | chr4_2:31086140-31086159 | Msa0597830:intron | 40.0% |
| !! | TCGGAGCTTTGGGATAAAAA+GGG | + | chr4_2:31086141-31086160 | Msa0597830:intron | 40.0% |
| GGCAGATCTATTTCCTGAAA+AGG | - | chr4_2:31086226-31086245 | None:intergenic | 40.0% | |
| CAAGCGATATGGTTGATTAG+TGG | - | chr4_2:31086247-31086266 | None:intergenic | 40.0% | |
| ! | CATGGGCTATCCTAAATAGT+TGG | + | chr4_2:31086493-31086512 | Msa0597830:intron | 40.0% |
| TGTGCCCAAAATTGAAGTGT+TGG | + | chr4_2:31086676-31086695 | Msa0597830:intron | 40.0% | |
| ! | GTGCCCAAAATTGAAGTGTT+GGG | + | chr4_2:31086677-31086696 | Msa0597830:intron | 40.0% |
| TCTTCTTACTCTGGGTTGTT+AGG | + | chr4_2:31086722-31086741 | Msa0597830:intron | 40.0% | |
| ! | GGGTTGTTAGGTGTCATATT+TGG | + | chr4_2:31086734-31086753 | Msa0597830:intron | 40.0% |
| ! | TAGGTGTCATATTTGGTAGG+TGG | + | chr4_2:31086741-31086760 | Msa0597830:intron | 40.0% |
| AAGGTATGAACTGGGTTCTA+GGG | - | chr4_2:31086857-31086876 | None:intergenic | 40.0% | |
| ! | AAAGGTATGAACTGGGTTCT+AGG | - | chr4_2:31086858-31086877 | None:intergenic | 40.0% |
| CCACTGTATCATGCAGATAA+AGG | - | chr4_2:31086876-31086895 | None:intergenic | 40.0% | |
| CCTTTATCTGCATGATACAG+TGG | + | chr4_2:31086873-31086892 | Msa0597830:intron | 40.0% | |
| TTATCTGCATGATACAGTGG+CGG | + | chr4_2:31086876-31086895 | Msa0597830:intron | 40.0% | |
| CAATGTACTTTGGTTGTGCT+GGG | + | chr4_2:31087137-31087156 | Msa0597830:intron | 40.0% | |
| !!! | CACCTAATGCGTTTTGGTTA+TGG | + | chr4_2:31087264-31087283 | Msa0597830:CDS | 40.0% |
| ! | AATTCAAGAGGAAAGTGCAC+GGG | - | chr4_2:31087318-31087337 | None:intergenic | 40.0% |
| ! | CAATTCAAGAGGAAAGTGCA+CGG | - | chr4_2:31087319-31087338 | None:intergenic | 40.0% |
| CAGTATATGGTGAAACAAGC+AGG | - | chr4_2:31087356-31087375 | None:intergenic | 40.0% | |
| GCTTGTTTCACCATATACTG+AGG | + | chr4_2:31087356-31087375 | Msa0597830:CDS | 40.0% | |
| ! | GCAACCTGCTTTATTCTCAA+TGG | + | chr4_2:31087487-31087506 | Msa0597830:intron | 40.0% |
| ATTAGATCTTCCAGGGTGAT+GGG | - | chr4_2:31087719-31087738 | None:intergenic | 40.0% | |
| AATTAGATCTTCCAGGGTGA+TGG | - | chr4_2:31087720-31087739 | None:intergenic | 40.0% | |
| TTTAACAGGTCAACAGTCCA+AGG | - | chr4_2:31087958-31087977 | None:intergenic | 40.0% | |
| TAAATAAACTCTGCTGCGAG+AGG | + | chr4_2:31088053-31088072 | Msa0597830:intron | 40.0% | |
| AAATAAACTCTGCTGCGAGA+GGG | + | chr4_2:31088054-31088073 | Msa0597830:intron | 40.0% | |
| CCTTTAACTCCTTCAACCAT+TGG | - | chr4_2:31088106-31088125 | None:intergenic | 40.0% | |
| CCAATGGTTGAAGGAGTTAA+AGG | + | chr4_2:31088103-31088122 | Msa0597830:intron | 40.0% | |
| TGGTTGAAGGAGTTAAAGGA+CGG | + | chr4_2:31088107-31088126 | Msa0597830:intron | 40.0% | |
| ACCAAAAAAAATCTGCTGGG+AGG | + | chr4_2:31088193-31088212 | Msa0597830:intron | 40.0% | |
| CCAAAAAAAATCTGCTGGGA+GGG | + | chr4_2:31088194-31088213 | Msa0597830:intron | 40.0% | |
| ! | GAGGGTTTTACTTCGCAAAT+GGG | + | chr4_2:31088212-31088231 | Msa0597830:intron | 40.0% |
| CAGTATCTGAAAGCTGCATT+GGG | - | chr4_2:31088264-31088283 | None:intergenic | 40.0% | |
| TCAGTATCTGAAAGCTGCAT+TGG | - | chr4_2:31088265-31088284 | None:intergenic | 40.0% | |
| AATGCAGCTTTCAGATACTG+AGG | + | chr4_2:31088264-31088283 | Msa0597830:intron | 40.0% | |
| !! | AAATAAGGTGCTGCATGATC+AGG | + | chr4_2:31088614-31088633 | Msa0597830:CDS | 40.0% |
| ! | TATCTACTCCCTTTTGCACT+TGG | + | chr4_2:31088689-31088708 | Msa0597830:three_prime_UTR | 40.0% |
| TCATGGTCTAGATAACAAGG+AGG | - | chr4_2:31088860-31088879 | None:intergenic | 40.0% | |
| ACATGTTCACGTCCTAAACT+AGG | - | chr4_2:31088896-31088915 | None:intergenic | 40.0% | |
| GGTTACGAAAAGACGAAAGG+TGG | - | chr4_2:31082826-31082845 | None:intergenic | 45.0% | |
| TCTTCGTCGATGCTTCTTCT+TGG | + | chr4_2:31082929-31082948 | Msa0597830:five_prime_UTR | 45.0% | |
| ATTCAAAAGCTCAAACGGGG+AGG | + | chr4_2:31082954-31082973 | Msa0597830:five_prime_UTR | 45.0% | |
| TTCAAAAGCTCAAACGGGGA+GGG | + | chr4_2:31082955-31082974 | Msa0597830:five_prime_UTR | 45.0% | |
| ATTACAGCGTCTCCTCTTTC+AGG | + | chr4_2:31083023-31083042 | Msa0597830:five_prime_UTR | 45.0% | |
| TTACAGCGTCTCCTCTTTCA+GGG | + | chr4_2:31083024-31083043 | Msa0597830:five_prime_UTR | 45.0% | |
| !! | GTTTTTGGAGACCCTGAAAG+AGG | - | chr4_2:31083038-31083057 | None:intergenic | 45.0% |
| TGGAAGAGGAAGATGCAACA+AGG | - | chr4_2:31083129-31083148 | None:intergenic | 45.0% | |
| ! | TAACATTTTCTCCTTCGGCC+GGG | - | chr4_2:31083492-31083511 | None:intergenic | 45.0% |
| ! | AAATAGCGGTTCTAGCGTAG+CGG | + | chr4_2:31083621-31083640 | Msa0597830:intron | 45.0% |
| GTGCTATAGCTGTAGCATAG+CGG | + | chr4_2:31083694-31083713 | Msa0597830:intron | 45.0% | |
| !!! | TTGTTTTTGGGTTTGGGAGC+AGG | + | chr4_2:31083789-31083808 | Msa0597830:intron | 45.0% |
| !! | TGGGAGCAGGTGTTACTATT+TGG | + | chr4_2:31083802-31083821 | Msa0597830:intron | 45.0% |
| TGCGAGAAATGAAAAGCCTG+TGG | + | chr4_2:31083873-31083892 | Msa0597830:CDS | 45.0% | |
| !! | GGAGCACTATTTGGTGCTTT+CGG | - | chr4_2:31083967-31083986 | None:intergenic | 45.0% |
| ! | TTTGAGTTTGGATGCTTCCG+AGG | + | chr4_2:31084191-31084210 | Msa0597830:CDS | 45.0% |
| TGCATAACAGCATGCCCATT+AGG | - | chr4_2:31084300-31084319 | None:intergenic | 45.0% | |
| GCATGCTGTTATGCATGCTA+AGG | + | chr4_2:31084305-31084324 | Msa0597830:CDS | 45.0% | |
| !! | CTCGAGGCCTTATTAACTCT+GGG | + | chr4_2:31084337-31084356 | Msa0597830:CDS | 45.0% |
| AAGAGCTCGTACCATTCCTA+AGG | + | chr4_2:31084434-31084453 | Msa0597830:CDS | 45.0% | |
| AGCAGAGGATAGACTACCTT+AGG | - | chr4_2:31084453-31084472 | None:intergenic | 45.0% | |
| CATTTCAGGAAGACCAAGGT+TGG | + | chr4_2:31084875-31084894 | Msa0597830:intron | 45.0% | |
| TTATGCTACTCCCACGTAGT+AGG | + | chr4_2:31084929-31084948 | Msa0597830:intron | 45.0% | |
| ! | CCAAGTCTTATCCTACTACG+TGG | - | chr4_2:31084943-31084962 | None:intergenic | 45.0% |
| CCACGTAGTAGGATAAGACT+TGG | + | chr4_2:31084940-31084959 | Msa0597830:intron | 45.0% | |
| ! | CTGTCTATCTGTCACTTCTG+TGG | + | chr4_2:31086031-31086050 | Msa0597830:intron | 45.0% |
| AAGGGGGTGAATTACAGCAA+GGG | - | chr4_2:31086106-31086125 | None:intergenic | 45.0% | |
| TCGAGATGGATCAAGCGATA+TGG | - | chr4_2:31086258-31086277 | None:intergenic | 45.0% | |
| CAATGGTGTGAACAGCATCA+GGG | - | chr4_2:31086287-31086306 | None:intergenic | 45.0% | |
| TCAATGGTGTGAACAGCATC+AGG | - | chr4_2:31086288-31086307 | None:intergenic | 45.0% | |
| TGATGCTGTTCACACCATTG+AGG | + | chr4_2:31086287-31086306 | Msa0597830:CDS | 45.0% | |
| TCTGCTCCAGAAACTCTTGA+AGG | + | chr4_2:31086327-31086346 | Msa0597830:CDS | 45.0% | |
| CGGTAACCTTCAAGAGTTTC+TGG | - | chr4_2:31086336-31086355 | None:intergenic | 45.0% | |
| TCTTGAAGGTTACCGAGCAT+CGG | + | chr4_2:31086341-31086360 | Msa0597830:CDS | 45.0% | |
| AGTGCAATGTGATGCATGCA+TGG | + | chr4_2:31086475-31086494 | Msa0597830:intron | 45.0% | |
| GTGCAATGTGATGCATGCAT+GGG | + | chr4_2:31086476-31086495 | Msa0597830:intron | 45.0% | |
| ! | AAGATGTGGTCTGAAGTCAC+TGG | + | chr4_2:31087064-31087083 | Msa0597830:intron | 45.0% |
| GCAATGTACTTTGGTTGTGC+TGG | + | chr4_2:31087136-31087155 | Msa0597830:intron | 45.0% | |
| !!! | CGTTTTGGTTATGGAAGCCA+GGG | + | chr4_2:31087273-31087292 | Msa0597830:CDS | 45.0% |
| CGTGCACTTTCCTCTTGAAT+TGG | + | chr4_2:31087317-31087336 | Msa0597830:CDS | 45.0% | |
| CGACCCAATACCAATTCAAG+AGG | - | chr4_2:31087330-31087349 | None:intergenic | 45.0% | |
| !! | TAAATGCTGGCTTCCCTTTC+TGG | + | chr4_2:31087451-31087470 | Msa0597830:intron | 45.0% |
| GTACTAGCAACCACCAGAAA+GGG | - | chr4_2:31087467-31087486 | None:intergenic | 45.0% | |
| TTAGATCTTCCAGGGTGATG+GGG | - | chr4_2:31087718-31087737 | None:intergenic | 45.0% | |
| AATAAACTCTGCTGCGAGAG+GGG | + | chr4_2:31088055-31088074 | Msa0597830:intron | 45.0% | |
| !! | GCTTAACTGGTTTGAGCCAA+TGG | + | chr4_2:31088087-31088106 | Msa0597830:intron | 45.0% |
| TGGTTTGAGCCAATGGTTGA+AGG | + | chr4_2:31088094-31088113 | Msa0597830:intron | 45.0% | |
| GGTTGAAGGAGTTAAAGGAC+GGG | + | chr4_2:31088108-31088127 | Msa0597830:intron | 45.0% | |
| GTTGAAGGAGTTAAAGGACG+GGG | + | chr4_2:31088109-31088128 | Msa0597830:intron | 45.0% | |
| TTGAAGGAGTTAAAGGACGG+GGG | + | chr4_2:31088110-31088129 | Msa0597830:intron | 45.0% | |
| !!! | CCCTCCCAGCAGATTTTTTT+TGG | - | chr4_2:31088197-31088216 | None:intergenic | 45.0% |
| ! | GGAGGGTTTTACTTCGCAAA+TGG | + | chr4_2:31088211-31088230 | Msa0597830:intron | 45.0% |
| ATGGAAGGGAGCCTTCAAAA+GGG | + | chr4_2:31088514-31088533 | Msa0597830:CDS | 45.0% | |
| ! | GCTGTGTAATGCCCTTTTGA+AGG | - | chr4_2:31088528-31088547 | None:intergenic | 45.0% |
| TAATCACTCGCATCTTCTCC+AGG | - | chr4_2:31088762-31088781 | None:intergenic | 45.0% | |
| !! | AAAGTTAAATAATTTAATAT+AGG | + | chr4_2:31086978-31086997 | Msa0597830:intron | 5.0% |
| GCTAAGGGAAAAGGAGTTGG+AGG | + | chr4_2:31083446-31083465 | Msa0597830:intron | 50.0% | |
| ! | TGCAGCTGATTCTTCTCCAC+AGG | - | chr4_2:31083892-31083911 | None:intergenic | 50.0% |
| GTGCTTTCGGTGAATTTGGC+AGG | - | chr4_2:31083954-31083973 | None:intergenic | 50.0% | |
| !! | TCACGGAGAGGAGCACTATT+TGG | - | chr4_2:31083976-31083995 | None:intergenic | 50.0% |
| AGTGATACTTGAGGGACCGA+TGG | - | chr4_2:31084091-31084110 | None:intergenic | 50.0% | |
| CCAGAGTTAATAAGGCCTCG+AGG | - | chr4_2:31084339-31084358 | None:intergenic | 50.0% | |
| !! | CCTCGAGGCCTTATTAACTC+TGG | + | chr4_2:31084336-31084355 | Msa0597830:CDS | 50.0% |
| ! | GAAAAGTCTTGTCCTGGGCA+GGG | - | chr4_2:31084989-31085008 | None:intergenic | 50.0% |
| ! | TGAAAAGTCTTGTCCTGGGC+AGG | - | chr4_2:31084990-31085009 | None:intergenic | 50.0% |
| CGGAGGACAACTCCAAAGTT+TGG | + | chr4_2:31085907-31085926 | Msa0597830:CDS | 50.0% | |
| GAAGGGGGTGAATTACAGCA+AGG | - | chr4_2:31086107-31086126 | None:intergenic | 50.0% | |
| CATCAGGGTGAATGTCGAGA+TGG | - | chr4_2:31086272-31086291 | None:intergenic | 50.0% | |
| !! | GAGTTTCTGGAGCAGAGAAC+AGG | - | chr4_2:31086323-31086342 | None:intergenic | 50.0% |
| TATTTGGTAGGTGGCACGCA+TGG | + | chr4_2:31086750-31086769 | Msa0597830:intron | 50.0% | |
| GGCGTATGAACTGGGTTCTA+GGG | - | chr4_2:31086806-31086825 | None:intergenic | 50.0% | |
| TGGCGTATGAACTGGGTTCT+AGG | - | chr4_2:31086807-31086826 | None:intergenic | 50.0% | |
| AGGTAGGTGGCGTATGAACT+GGG | - | chr4_2:31086814-31086833 | None:intergenic | 50.0% | |
| !!! | GCGTTTTGGTTATGGAAGCC+AGG | + | chr4_2:31087272-31087291 | Msa0597830:CDS | 50.0% |
| !! | TAAGCAACTTGGTGCTTCCC+TGG | - | chr4_2:31087293-31087312 | None:intergenic | 50.0% |
| CGTACTAGCAACCACCAGAA+AGG | - | chr4_2:31087468-31087487 | None:intergenic | 50.0% | |
| ! | TAGATCTTCCAGGGTGATGG+GGG | - | chr4_2:31087717-31087736 | None:intergenic | 50.0% |
| ATAAACTCTGCTGCGAGAGG+GGG | + | chr4_2:31088056-31088075 | Msa0597830:intron | 50.0% | |
| GGGGGTTCAAATCTCAGTGA+AGG | + | chr4_2:31088128-31088147 | Msa0597830:intron | 50.0% | |
| CATGGAAGGGAGCCTTCAAA+AGG | + | chr4_2:31088513-31088532 | Msa0597830:CDS | 50.0% | |
| ATGCCCAGTACCCTAATGGT+CGG | + | chr4_2:31088550-31088569 | Msa0597830:CDS | 50.0% | |
| GAAAAGGAGTTGGAGGTCCG+AGG | + | chr4_2:31083453-31083472 | Msa0597830:intron | 55.0% | |
| CGGGTTTGAACTCACGACCT+CGG | - | chr4_2:31083473-31083492 | None:intergenic | 55.0% | |
| CGAGGTCGTGAGTTCAAACC+CGG | + | chr4_2:31083471-31083490 | Msa0597830:intron | 55.0% | |
| GCTAAGGATCTTCAGCCTCG+AGG | + | chr4_2:31084321-31084340 | Msa0597830:CDS | 55.0% | |
| CTTCCTTAGTGCAACCGTGC+AGG | + | chr4_2:31084368-31084387 | Msa0597830:CDS | 55.0% | |
| ACAAGCCAAGAGAGCCTGCA+CGG | - | chr4_2:31084385-31084404 | None:intergenic | 55.0% | |
| TATGCTACTCTTCCCTGCCC+AGG | + | chr4_2:31084974-31084993 | Msa0597830:intron | 55.0% | |
| GGCATCTTCTTGCCTGAGAG+TGG | - | chr4_2:31085687-31085706 | None:intergenic | 55.0% | |
| TCTCAGGCAAGAAGATGCCC+AGG | + | chr4_2:31085688-31085707 | Msa0597830:intron | 55.0% | |
| TGGAGCAGAGAACAGGTGCA+GGG | - | chr4_2:31086316-31086335 | None:intergenic | 55.0% | |
| CCTTTCCAGAGACCGATGCT+CGG | - | chr4_2:31086356-31086375 | None:intergenic | 55.0% | |
| GAGGTAGGTGGCGTATGAAC+TGG | - | chr4_2:31086815-31086834 | None:intergenic | 55.0% | |
| GTGCACGGGCTTAAGCAACT+TGG | - | chr4_2:31087304-31087323 | None:intergenic | 55.0% | |
| !! | ATGCTGGCTTCCCTTTCTGG+TGG | + | chr4_2:31087454-31087473 | Msa0597830:intron | 55.0% |
| !! | AGATCTTCCAGGGTGATGGG+GGG | - | chr4_2:31087716-31087735 | None:intergenic | 55.0% |
| CGTGACAACTGCTCTACCCT+TGG | - | chr4_2:31087835-31087854 | None:intergenic | 55.0% | |
| TAAACTCTGCTGCGAGAGGG+GGG | + | chr4_2:31088057-31088076 | Msa0597830:intron | 55.0% | |
| GCTGATGCCCAGTACCCTAA+TGG | + | chr4_2:31088546-31088565 | Msa0597830:CDS | 55.0% | |
| ! | CCACCGACCATTAGGGTACT+GGG | - | chr4_2:31088556-31088575 | None:intergenic | 55.0% |
| ATCGCAGCCACCGACCATTA+GGG | - | chr4_2:31088563-31088582 | None:intergenic | 55.0% | |
| AATCGCAGCCACCGACCATT+AGG | - | chr4_2:31088564-31088583 | None:intergenic | 55.0% | |
| CCAGTTGAGCTACCCAACCC+CGG | - | chr4_2:31083421-31083440 | None:intergenic | 60.0% | |
| GTGAGTTCAAACCCGGCCGA+AGG | + | chr4_2:31083478-31083497 | Msa0597830:intron | 60.0% | |
| GAGCCTGCACGGTTGCACTA+AGG | - | chr4_2:31084374-31084393 | None:intergenic | 60.0% | |
| TGCAACCGTGCAGGCTCTCT+TGG | + | chr4_2:31084377-31084396 | Msa0597830:CDS | 60.0% | |
| ! | GGTACCAACGTGCCACTCTC+AGG | + | chr4_2:31085672-31085691 | Msa0597830:intron | 60.0% |
| CTTGCCTGAGAGTGGCACGT+TGG | - | chr4_2:31085679-31085698 | None:intergenic | 60.0% | |
| ! | CAGGTGCAGGGCATCCTCAA+TGG | - | chr4_2:31086304-31086323 | None:intergenic | 60.0% |
| CTGGAGCAGAGAACAGGTGC+AGG | - | chr4_2:31086317-31086336 | None:intergenic | 60.0% | |
| !! | GGTTACCGAGCATCGGTCTC+TGG | + | chr4_2:31086348-31086367 | Msa0597830:CDS | 60.0% |
| !! | CCGAGCATCGGTCTCTGGAA+AGG | + | chr4_2:31086353-31086372 | Msa0597830:CDS | 60.0% |
| TAGTACTCCCCCCATCACCC+TGG | + | chr4_2:31087706-31087725 | Msa0597830:intron | 60.0% | |
| GGGGGGTTGGGTAGCTTAAC+TGG | + | chr4_2:31088074-31088093 | Msa0597830:intron | 60.0% | |
| CCCAGTACCCTAATGGTCGG+TGG | + | chr4_2:31088553-31088572 | Msa0597830:CDS | 60.0% | |
| GCCACCGACCATTAGGGTAC+TGG | - | chr4_2:31088557-31088576 | None:intergenic | 60.0% | |
| CCGGGGTTGGGTAGCTCAAC+TGG | + | chr4_2:31083418-31083437 | Msa0597830:intron | 65.0% | |
| TCTGCTGCGAGAGGGGGGTT+GGG | + | chr4_2:31088062-31088081 | Msa0597830:intron | 65.0% | |
| CTCTGCTGCGAGAGGGGGGT+TGG | + | chr4_2:31088061-31088080 | Msa0597830:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 31082801 | 31089211 | 31082801 | ID=Msa0597830;Name=Msa0597830 |
| chr4_2 | mRNA | 31082801 | 31089211 | 31082801 | ID=Msa0597830-mRNA-1;Parent=Msa0597830;Name=Msa0597830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=361|0.83|0.85|1|1|1|7|546|511 |
| chr4_2 | exon | 31082801 | 31083176 | 31082801 | ID=Msa0597830-mRNA-1:exon:7767;Parent=Msa0597830-mRNA-1 |
| chr4_2 | exon | 31083811 | 31084455 | 31083811 | ID=Msa0597830-mRNA-1:exon:7768;Parent=Msa0597830-mRNA-1 |
| chr4_2 | exon | 31084705 | 31084829 | 31084705 | ID=Msa0597830-mRNA-1:exon:7769;Parent=Msa0597830-mRNA-1 |
| chr4_2 | exon | 31085694 | 31085941 | 31085694 | ID=Msa0597830-mRNA-1:exon:7770;Parent=Msa0597830-mRNA-1 |
| chr4_2 | exon | 31086232 | 31086374 | 31086232 | ID=Msa0597830-mRNA-1:exon:7771;Parent=Msa0597830-mRNA-1 |
| chr4_2 | exon | 31087207 | 31087377 | 31087207 | ID=Msa0597830-mRNA-1:exon:7772;Parent=Msa0597830-mRNA-1 |
| chr4_2 | exon | 31088477 | 31089211 | 31088477 | ID=Msa0597830-mRNA-1:exon:7773;Parent=Msa0597830-mRNA-1 |
| chr4_2 | five_prime_UTR | 31082801 | 31083161 | 31082801 | ID=Msa0597830-mRNA-1:five_prime_utr;Parent=Msa0597830-mRNA-1 |
| chr4_2 | CDS | 31083162 | 31083176 | 31083162 | ID=Msa0597830-mRNA-1:cds;Parent=Msa0597830-mRNA-1 |
| chr4_2 | CDS | 31083811 | 31084455 | 31083811 | ID=Msa0597830-mRNA-1:cds;Parent=Msa0597830-mRNA-1 |
| chr4_2 | CDS | 31084705 | 31084829 | 31084705 | ID=Msa0597830-mRNA-1:cds;Parent=Msa0597830-mRNA-1 |
| chr4_2 | CDS | 31085694 | 31085941 | 31085694 | ID=Msa0597830-mRNA-1:cds;Parent=Msa0597830-mRNA-1 |
| chr4_2 | CDS | 31086232 | 31086374 | 31086232 | ID=Msa0597830-mRNA-1:cds;Parent=Msa0597830-mRNA-1 |
| chr4_2 | CDS | 31087207 | 31087377 | 31087207 | ID=Msa0597830-mRNA-1:cds;Parent=Msa0597830-mRNA-1 |
| chr4_2 | CDS | 31088477 | 31088665 | 31088477 | ID=Msa0597830-mRNA-1:cds;Parent=Msa0597830-mRNA-1 |
| chr4_2 | three_prime_UTR | 31088666 | 31089211 | 31088666 | ID=Msa0597830-mRNA-1:three_prime_utr;Parent=Msa0597830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
