Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637720 | XP_003595735.1 | 92.857 | 532 | 17 | 1 | 1 | 511 | 1 | 532 | 0.0 | 1002 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637720 | sp|Q9FPS3|UBP24_ARATH | 50.871 | 574 | 196 | 16 | 1 | 511 | 1 | 551 | 1.67e-161 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637720 | G7IGQ8 | 92.857 | 532 | 17 | 1 | 1 | 511 | 1 | 532 | 0.0 | 1002 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054480 | Msa0637720 | 0.802375 | 5.780740e-49 | -8.615850e-47 |
| Msa0054820 | Msa0637720 | 0.805707 | 1.171999e-49 | -8.615850e-47 |
| Msa0056450 | Msa0637720 | 0.802479 | 5.501044e-49 | -8.615850e-47 |
| Msa0078640 | Msa0637720 | 0.802950 | 4.398238e-49 | -8.615850e-47 |
| Msa0100160 | Msa0637720 | 0.824695 | 7.021989e-54 | -8.615850e-47 |
| Msa0637600 | Msa0637720 | 0.960303 | 2.094244e-118 | -8.615850e-47 |
| Msa0637720 | Msa0658590 | 0.811460 | 6.925867e-51 | -8.615850e-47 |
| Msa0637720 | Msa0707250 | 0.807485 | 4.940596e-50 | -8.615850e-47 |
| Msa0637720 | Msa0733010 | 0.823327 | 1.470227e-53 | -8.615850e-47 |
| Msa0637720 | Msa0817460 | 0.817134 | 3.859260e-52 | -8.615850e-47 |
| Msa0637720 | Msa0835230 | 0.800280 | 1.551765e-48 | -8.615850e-47 |
| Msa0637720 | Msa0868160 | 0.802609 | 5.172481e-49 | -8.615850e-47 |
| Msa0637720 | Msa0965080 | 0.805469 | 1.314848e-49 | -8.615850e-47 |
| Msa0637720 | Msa0986510 | 0.805741 | 1.153218e-49 | -8.615850e-47 |
| Msa0637720 | Msa1034500 | 0.819801 | 9.598282e-53 | -8.615850e-47 |
| Msa0637720 | Msa1038080 | 0.800661 | 1.298161e-48 | -8.615850e-47 |
| Msa0637720 | Msa1089450 | 0.800205 | 1.607692e-48 | -8.615850e-47 |
| Msa0637720 | Msa1104560 | 0.810294 | 1.237971e-50 | -8.615850e-47 |
| Msa0637720 | Msa1111870 | 0.808567 | 2.906325e-50 | -8.615850e-47 |
| Msa0637720 | Msa1170760 | 0.808314 | 3.290837e-50 | -8.615850e-47 |
| Msa0637720 | Msa1225860 | -0.818202 | 2.216306e-52 | -8.615850e-47 |
| Msa0637720 | Msa1226470 | 0.812184 | 4.817565e-51 | -8.615850e-47 |
| Msa0637720 | Msa1236460 | 0.813832 | 2.096626e-51 | -8.615850e-47 |
| Msa0637720 | Msa1237700 | 0.815791 | 7.711939e-52 | -8.615850e-47 |
| Msa0637720 | Msa1246360 | 0.811546 | 6.632054e-51 | -8.615850e-47 |
| Msa0637720 | Msa1286610 | 0.806650 | 7.419600e-50 | -8.615850e-47 |
| Msa0637720 | Msa1307560 | 0.820206 | 7.751765e-53 | -8.615850e-47 |
| Msa0637720 | Msa1342380 | 0.809754 | 1.618733e-50 | -8.615850e-47 |
| Msa0637720 | Msa1345810 | 0.803916 | 2.773526e-49 | -8.615850e-47 |
| Msa0637720 | Msa1359560 | 0.817711 | 2.861584e-52 | -8.615850e-47 |
| Msa0637720 | Msa1368360 | 0.806665 | 7.368371e-50 | -8.615850e-47 |
| Msa0637720 | Msa1393570 | 0.802335 | 5.892287e-49 | -8.615850e-47 |
| Msa0637720 | Msa1425880 | 0.802739 | 4.863319e-49 | -8.615850e-47 |
| Msa0637720 | Msa1440310 | 0.806192 | 9.267575e-50 | -8.615850e-47 |
| Msa0637720 | Msa1448560 | 0.815369 | 9.578815e-52 | -8.615850e-47 |
| Msa0637720 | Msa1454620 | 0.817070 | 3.989723e-52 | -8.615850e-47 |
| Msa0127020 | Msa0637720 | 0.814396 | 1.573825e-51 | -8.615850e-47 |
| Msa0169280 | Msa0637720 | 0.813605 | 2.351811e-51 | -8.615850e-47 |
| Msa0189040 | Msa0637720 | 0.809122 | 2.211934e-50 | -8.615850e-47 |
| Msa0189710 | Msa0637720 | 0.816238 | 6.131095e-52 | -8.615850e-47 |
| Msa0225220 | Msa0637720 | 0.806715 | 7.190130e-50 | -8.615850e-47 |
| Msa0232020 | Msa0637720 | 0.833033 | 6.729238e-56 | -8.615850e-47 |
| Msa0232090 | Msa0637720 | 0.815638 | 8.343023e-52 | -8.615850e-47 |
| Msa0237210 | Msa0637720 | 0.824670 | 7.118616e-54 | -8.615850e-47 |
| Msa0367870 | Msa0637720 | 0.805107 | 1.566274e-49 | -8.615850e-47 |
| Msa0371090 | Msa0637720 | 0.801130 | 1.040829e-48 | -8.615850e-47 |
| Msa0414140 | Msa0637720 | 0.801369 | 9.303305e-49 | -8.615850e-47 |
| Msa0240900 | Msa0637720 | 0.801088 | 1.062029e-48 | -8.615850e-47 |
| Msa0241140 | Msa0637720 | 0.856491 | 3.103530e-62 | -8.615850e-47 |
| Msa0279220 | Msa0637720 | 0.804051 | 2.600290e-49 | -8.615850e-47 |
| Msa0310090 | Msa0637720 | 0.822740 | 2.014857e-53 | -8.615850e-47 |
| Msa0315690 | Msa0637720 | 0.818720 | 1.691662e-52 | -8.615850e-47 |
| Msa0317970 | Msa0637720 | 0.812707 | 3.701715e-51 | -8.615850e-47 |
| Msa0342010 | Msa0637720 | 0.808088 | 3.677974e-50 | -8.615850e-47 |
| Msa0529890 | Msa0637720 | 0.801345 | 9.409448e-49 | -8.615850e-47 |
| Msa0532960 | Msa0637720 | 0.807167 | 5.768063e-50 | -8.615850e-47 |
| Msa0532980 | Msa0637720 | 0.805563 | 1.256977e-49 | -8.615850e-47 |
| Msa0583360 | Msa0637720 | -0.810949 | 8.936328e-51 | -8.615850e-47 |
| Msa0585560 | Msa0637720 | 0.805406 | 1.355433e-49 | -8.615850e-47 |
| Msa0597830 | Msa0637720 | 0.958452 | 2.277323e-116 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637720 | MtrunA17_Chr4g0020741 | 92.857 | 532 | 17 | 1 | 1 | 511 | 1 | 532 | 0.0 | 1002 |
| Msa0637720 | MtrunA17_Chr2g0312901 | 28.406 | 345 | 195 | 10 | 181 | 510 | 21 | 328 | 3.07e-25 | 109 |
| Msa0637720 | MtrunA17_Chr4g0074041 | 27.844 | 334 | 200 | 9 | 183 | 508 | 93 | 393 | 3.63e-23 | 103 |
| Msa0637720 | MtrunA17_Chr3g0123951 | 27.855 | 359 | 210 | 14 | 183 | 511 | 24 | 363 | 8.05e-23 | 100 |
| Msa0637720 | MtrunA17_Chr1g0150541 | 28.342 | 374 | 193 | 16 | 158 | 511 | 169 | 487 | 8.09e-22 | 99.4 |
| Msa0637720 | MtrunA17_Chr6g0458421 | 25.220 | 341 | 203 | 9 | 181 | 510 | 28 | 327 | 1.27e-21 | 98.2 |
| Msa0637720 | MtrunA17_Chr6g0458441 | 24.638 | 345 | 200 | 9 | 181 | 510 | 126 | 425 | 2.59e-21 | 97.8 |
| Msa0637720 | MtrunA17_Chr8g0366721 | 26.271 | 354 | 167 | 13 | 183 | 510 | 213 | 498 | 1.70e-20 | 94.7 |
| Msa0637720 | MtrunA17_Chr5g0411271 | 26.361 | 349 | 182 | 13 | 183 | 510 | 155 | 449 | 1.47e-19 | 92.4 |
| Msa0637720 | MtrunA17_Chr2g0313171 | 27.577 | 359 | 179 | 16 | 181 | 510 | 463 | 769 | 1.22e-18 | 89.7 |
| Msa0637720 | MtrunA17_Chr6g0458431 | 24.198 | 343 | 200 | 9 | 181 | 508 | 93 | 390 | 2.22e-18 | 88.6 |
| Msa0637720 | MtrunA17_Chr8g0365831 | 24.581 | 358 | 182 | 14 | 183 | 510 | 165 | 464 | 7.40e-15 | 77.0 |
| Msa0637720 | MtrunA17_Chr4g0062561 | 25.150 | 334 | 193 | 10 | 183 | 508 | 254 | 538 | 7.37e-14 | 74.7 |
| Msa0637720 | MtrunA17_Chr2g0322211 | 34.711 | 121 | 68 | 4 | 396 | 511 | 748 | 862 | 1.78e-12 | 70.1 |
| Msa0637720 | MtrunA17_Chr7g0255591 | 34.746 | 118 | 74 | 3 | 396 | 511 | 785 | 901 | 5.33e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637720 | AT4G30890.1 | 50.871 | 574 | 196 | 16 | 1 | 511 | 1 | 551 | 1.70e-162 | 472 |
| Msa0637720 | AT4G30890.2 | 50.871 | 574 | 196 | 16 | 1 | 511 | 1 | 551 | 1.70e-162 | 472 |
| Msa0637720 | AT4G30890.3 | 50.871 | 574 | 196 | 16 | 1 | 511 | 1 | 551 | 1.70e-162 | 472 |
| Msa0637720 | AT5G57990.1 | 26.567 | 335 | 202 | 9 | 183 | 508 | 108 | 407 | 2.94e-23 | 104 |
| Msa0637720 | AT3G14400.1 | 26.648 | 349 | 200 | 9 | 181 | 510 | 23 | 334 | 1.60e-22 | 101 |
| Msa0637720 | AT5G65450.2 | 27.299 | 348 | 198 | 12 | 178 | 510 | 344 | 651 | 2.00e-22 | 101 |
| Msa0637720 | AT5G65450.1 | 27.299 | 348 | 198 | 12 | 178 | 510 | 325 | 632 | 2.26e-22 | 101 |
| Msa0637720 | AT4G24560.1 | 28.329 | 353 | 191 | 15 | 178 | 511 | 538 | 847 | 2.27e-21 | 98.6 |
| Msa0637720 | AT5G46740.1 | 25.369 | 339 | 204 | 7 | 183 | 508 | 164 | 466 | 2.41e-21 | 98.2 |
| Msa0637720 | AT2G22310.1 | 28.134 | 359 | 208 | 15 | 183 | 511 | 24 | 362 | 3.05e-21 | 95.9 |
| Msa0637720 | AT4G31670.1 | 28.249 | 354 | 191 | 15 | 178 | 511 | 164 | 474 | 4.34e-21 | 97.4 |
| Msa0637720 | AT4G39910.1 | 26.558 | 369 | 206 | 17 | 183 | 511 | 24 | 367 | 1.38e-20 | 94.0 |
| Msa0637720 | AT1G17110.3 | 26.361 | 349 | 198 | 14 | 178 | 508 | 434 | 741 | 4.49e-20 | 94.7 |
| Msa0637720 | AT1G17110.1 | 26.361 | 349 | 198 | 14 | 178 | 508 | 434 | 741 | 4.49e-20 | 94.7 |
| Msa0637720 | AT1G17110.2 | 26.361 | 349 | 198 | 14 | 178 | 508 | 438 | 745 | 4.75e-20 | 94.4 |
| Msa0637720 | AT2G22310.3 | 26.705 | 352 | 194 | 15 | 197 | 511 | 6 | 330 | 2.52e-17 | 83.6 |
| Msa0637720 | AT5G46740.2 | 26.087 | 276 | 160 | 5 | 241 | 508 | 18 | 257 | 4.15e-17 | 84.7 |
| Msa0637720 | AT5G22030.2 | 35.246 | 122 | 67 | 3 | 396 | 511 | 796 | 911 | 2.44e-13 | 73.2 |
| Msa0637720 | AT5G22030.1 | 35.246 | 122 | 67 | 3 | 396 | 511 | 754 | 869 | 2.84e-13 | 73.2 |
| Msa0637720 | AT4G17895.1 | 23.684 | 342 | 204 | 8 | 183 | 510 | 177 | 475 | 1.05e-12 | 71.2 |
| Msa0637720 | AT2G40930.1 | 35.897 | 117 | 72 | 3 | 396 | 510 | 800 | 915 | 2.50e-12 | 70.1 |
| Msa0637720 | AT2G40930.2 | 35.897 | 117 | 72 | 3 | 396 | 510 | 800 | 915 | 2.50e-12 | 70.1 |
Find 136 sgRNAs with CRISPR-Local
Find 447 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACAGCGTCTCCTCTTTC+AGG | 0.120112 | 4_3:-30084411 | Msa0637720:five_prime_UTR |
| CGTGATTCTCAGAAATTTAA+AGG | 0.150466 | 4_3:-30083444 | Msa0637720:CDS |
| CGGTAACCTTCAAGAGTTTC+TGG | 0.156851 | 4_3:+30081102 | None:intergenic |
| GTTACACCAATTGATGAAAA+TGG | 0.235400 | 4_3:-30083288 | Msa0637720:CDS |
| TGGGAGCAGGTGTTACTATT+TGG | 0.239238 | 4_3:-30083633 | Msa0637720:intron |
| CTTTGCTATTGCAACAAATA+AGG | 0.245305 | 4_3:-30078837 | Msa0637720:CDS |
| CTTTCCTCTTGAATTGGTAT+TGG | 0.248503 | 4_3:-30080113 | Msa0637720:CDS |
| GTAACAGCAGATTTATTCTT+TGG | 0.248970 | 4_3:+30081593 | None:intergenic |
| TTTATTCCCTCAGAATTAAA+TGG | 0.273600 | 4_3:-30081557 | Msa0637720:CDS |
| TTTGGTGCTTTCGGTGAATT+TGG | 0.281536 | 4_3:+30083480 | None:intergenic |
| TTCTTCGTCGATGCTTCTTT+TGG | 0.293938 | 4_3:-30084504 | Msa0637720:five_prime_UTR |
| AGAAGAAGAAGATGAAGAAA+AGG | 0.299009 | 4_3:+30084523 | None:intergenic |
| CCAGTTTACGAATTTGAGTT+TGG | 0.307610 | 4_3:-30083256 | Msa0637720:CDS |
| TTTCCTCTTGAATTGGTATT+GGG | 0.309419 | 4_3:-30080112 | Msa0637720:CDS |
| ATAAATTCCCAGAGTTAATA+AGG | 0.309476 | 4_3:+30083091 | None:intergenic |
| ATTTAACCAAGACTTGAAAA+AGG | 0.314327 | 4_3:-30083163 | Msa0637720:CDS |
| AGGTGCAATATCATTACTTT+AGG | 0.315233 | 4_3:+30080190 | None:intergenic |
| AATCGCAGCCACCGACCATT+AGG | 0.322141 | 4_3:+30078875 | None:intergenic |
| AGGACATCTTCAAACATAAC+AGG | 0.328529 | 4_3:+30082613 | None:intergenic |
| ATGCGAGTGATTATTCATTA+AGG | 0.330035 | 4_3:-30078667 | Msa0637720:three_prime_UTR |
| CGGAGGACAACTCCAAAGTT+TGG | 0.335704 | 4_3:-30081528 | Msa0637720:CDS |
| GGACAGTCTTCAAGTCTTAA+TGG | 0.340469 | 4_3:-30081671 | Msa0637720:CDS |
| GATATGTTTACCTCAGTATA+TGG | 0.342798 | 4_3:+30080070 | None:intergenic |
| TCACGGAGAGGAGCACTATT+TGG | 0.352711 | 4_3:+30083462 | None:intergenic |
| CCAAACTCAAATTCGTAAAC+TGG | 0.354303 | 4_3:+30083256 | None:intergenic |
| CGTGCACTTTCCTCTTGAAT+TGG | 0.361534 | 4_3:-30080119 | Msa0637720:CDS |
| GAGAAGAATCAGCTGCAATT+TGG | 0.366023 | 4_3:-30083540 | Msa0637720:CDS |
| ATATTGCACCTAATGCGTTT+TGG | 0.371667 | 4_3:-30080178 | Msa0637720:CDS |
| TCAATGGTGTGAACAGCATC+AGG | 0.372539 | 4_3:+30081150 | None:intergenic |
| TGCAACCGTGCAGGCTCTCT+TGG | 0.378354 | 4_3:-30083058 | Msa0637720:CDS |
| TCTTATCACACACTCTAGAT+TGG | 0.380989 | 4_3:+30078624 | None:intergenic |
| GGAGCACTATTTGGTGCTTT+CGG | 0.387557 | 4_3:+30083471 | None:intergenic |
| GGTTACCGAGCATCGGTCTC+TGG | 0.393785 | 4_3:-30081087 | Msa0637720:CDS |
| AAAAGGGAGTAGATATCAAC+AGG | 0.395187 | 4_3:+30078755 | None:intergenic |
| TAAGCAACTTGGTGCTTCCC+TGG | 0.400831 | 4_3:+30080146 | None:intergenic |
| GGAATTTCTGAGCTTTGTAA+TGG | 0.401010 | 4_3:-30081726 | Msa0637720:CDS |
| TGCATAACAGCATGCCCATT+AGG | 0.406025 | 4_3:+30083138 | None:intergenic |
| TCGAGATGGATCAAGCGATA+TGG | 0.420936 | 4_3:+30081180 | None:intergenic |
| GAAGAAGAAGATGAAGAAAA+GGG | 0.421367 | 4_3:+30084524 | None:intergenic |
| GCCACCGACCATTAGGGTAC+TGG | 0.426370 | 4_3:+30078882 | None:intergenic |
| TTCTTTAAGTTTACACCGCT+TGG | 0.426766 | 4_3:+30082676 | None:intergenic |
| CAAGGTTTGTGTATAGAGAA+AGG | 0.428549 | 4_3:+30084357 | None:intergenic |
| TGGTAATTCAAAAGCTCAAA+CGG | 0.434005 | 4_3:-30084484 | Msa0637720:five_prime_UTR |
| GAGAAAGGAGGAAAATCAAA+AGG | 0.443748 | 4_3:+30084372 | None:intergenic |
| AAATAAGGTGCTGCATGATC+AGG | 0.444504 | 4_3:-30078822 | Msa0637720:CDS |
| GGTAATTCAAAAGCTCAAAC+GGG | 0.447965 | 4_3:-30084483 | Msa0637720:five_prime_UTR |
| TGCAGCTGATTCTTCTCCAC+AGG | 0.448468 | 4_3:+30083546 | None:intergenic |
| TTCCATAACCAAAACGCATT+AGG | 0.451915 | 4_3:+30080170 | None:intergenic |
| TCCTGCAAAAGCTGAACAAA+AGG | 0.451972 | 4_3:+30083027 | None:intergenic |
| ATCGCAGCCACCGACCATTA+GGG | 0.452783 | 4_3:+30078876 | None:intergenic |
| GACGAATTACTGAAGCTTGA+AGG | 0.453272 | 4_3:-30081692 | Msa0637720:CDS |
| GTGCTTTCGGTGAATTTGGC+AGG | 0.453991 | 4_3:+30083484 | None:intergenic |
| CCTCGAGGCCTTATTAACTC+TGG | 0.457487 | 4_3:-30083099 | Msa0637720:CDS |
| GCTGATGCCCAGTACCCTAA+TGG | 0.462446 | 4_3:-30078890 | Msa0637720:CDS |
| TTACAAAGCTCAGAAATTCC+TGG | 0.463282 | 4_3:+30081729 | None:intergenic |
| GAGTTTCTGGAGCAGAGAAC+AGG | 0.464848 | 4_3:+30081115 | None:intergenic |
| CTTTAGTTATCACCAAACTT+TGG | 0.466105 | 4_3:+30081516 | None:intergenic |
| TTCTGTGGAAGATGATGAAT+GGG | 0.466491 | 4_3:-30081627 | Msa0637720:CDS |
| TTACAGCGTCTCCTCTTTCA+GGG | 0.466795 | 4_3:-30084410 | Msa0637720:five_prime_UTR |
| AAGGAGGAAAATCAAAAGGT+AGG | 0.468850 | 4_3:+30084376 | None:intergenic |
| CATGGAAGGGAGCCTTCAAA+AGG | 0.476899 | 4_3:-30078923 | Msa0637720:CDS |
| GTTGCTACAATTACTCATCA+TGG | 0.478854 | 4_3:-30078941 | Msa0637720:CDS |
| CTTCTGTGGAAGATGATGAA+TGG | 0.479192 | 4_3:-30081628 | Msa0637720:CDS |
| TCTGCTCCAGAAACTCTTGA+AGG | 0.487177 | 4_3:-30081108 | Msa0637720:CDS |
| AGGAGGAAAATCAAAAGGTA+GGG | 0.498898 | 4_3:+30084377 | None:intergenic |
| CAAAGTTTGGTGATAACTAA+AGG | 0.501251 | 4_3:-30081515 | Msa0637720:intron |
| CTTCCTTAGTGCAACCGTGC+AGG | 0.502300 | 4_3:-30083067 | Msa0637720:CDS |
| TTTGCACTAGTGATACTTGA+GGG | 0.507883 | 4_3:+30083339 | None:intergenic |
| AAAATACCATTTAATTCTGA+GGG | 0.508677 | 4_3:+30081551 | None:intergenic |
| TAATCACTCGCATCTTCTCC+AGG | 0.509556 | 4_3:+30078677 | None:intergenic |
| TGCTCATATTGCTGAAGAGA+TGG | 0.514308 | 4_3:+30084288 | None:intergenic |
| TTTATAGTTTCTGTTACTTG+AGG | 0.515498 | 4_3:+30083396 | None:intergenic |
| ACAGAAACTATAAAAGAGAA+TGG | 0.517959 | 4_3:-30083387 | Msa0637720:CDS |
| CTGGAGCAGAGAACAGGTGC+AGG | 0.520052 | 4_3:+30081121 | None:intergenic |
| CTCGAGGCCTTATTAACTCT+GGG | 0.522645 | 4_3:-30083098 | Msa0637720:CDS |
| CCACCGACCATTAGGGTACT+GGG | 0.524640 | 4_3:+30078883 | None:intergenic |
| CAGGTGCAGGGCATCCTCAA+TGG | 0.527009 | 4_3:+30081134 | None:intergenic |
| ACATGTTCACGTCCTAAACT+AGG | 0.527070 | 4_3:+30078543 | None:intergenic |
| CAGTATATGGTGAAACAAGC+AGG | 0.532160 | 4_3:+30080083 | None:intergenic |
| TATTGCTGAAGAGATGGAAG+AGG | 0.533935 | 4_3:+30084294 | None:intergenic |
| AGATGAAACCAGATCATTGT+GGG | 0.541732 | 4_3:-30083598 | Msa0637720:CDS |
| TTTGAGTTTGGATGCTTCCG+AGG | 0.542094 | 4_3:-30083244 | Msa0637720:CDS |
| CAAGCGATATGGTTGATTAG+TGG | 0.543313 | 4_3:+30081191 | None:intergenic |
| GAAAATACCATTTAATTCTG+AGG | 0.543985 | 4_3:+30081550 | None:intergenic |
| CTACAATTACTCATCATGGA+AGG | 0.546652 | 4_3:-30078937 | Msa0637720:CDS |
| AGAATAAATCTGCTGTTACA+AGG | 0.547889 | 4_3:-30081589 | Msa0637720:CDS |
| CAGAAATTTAAAGGAGTGAA+CGG | 0.548010 | 4_3:-30083435 | Msa0637720:CDS |
| GAGCCTGCACGGTTGCACTA+AGG | 0.549129 | 4_3:+30083064 | None:intergenic |
| CTTTAAATTTCTGAGAATCA+CGG | 0.550479 | 4_3:+30083445 | None:intergenic |
| TACAAAGCTCAGAAATTCCT+GGG | 0.553730 | 4_3:+30081730 | None:intergenic |
| ATGATGAATGGGAAACAGTA+GGG | 0.553915 | 4_3:-30081616 | Msa0637720:CDS |
| GTGCACGGGCTTAAGCAACT+TGG | 0.554134 | 4_3:+30080135 | None:intergenic |
| CAGCAATATGAGCAATCCTA+AGG | 0.565599 | 4_3:-30084279 | Msa0637720:intron |
| GATGATGAATGGGAAACAGT+AGG | 0.568873 | 4_3:-30081617 | Msa0637720:CDS |
| TCTCAGGCAAGAAGATGCCC+AGG | 0.569830 | 4_3:-30081747 | Msa0637720:intron |
| GTTCTTCAAACTTTCAGCCT+CGG | 0.573342 | 4_3:+30083227 | None:intergenic |
| TCTTGAAGGTTACCGAGCAT+CGG | 0.578705 | 4_3:-30081094 | Msa0637720:CDS |
| AAGAGCTCGTACCATTCCTA+AGG | 0.579648 | 4_3:-30083001 | Msa0637720:intron |
| CCGAGCATCGGTCTCTGGAA+AGG | 0.582535 | 4_3:-30081082 | Msa0637720:intron |
| CTGTAATTGAAGACATGAAG+AGG | 0.587197 | 4_3:+30084427 | None:intergenic |
| CGACCCAATACCAATTCAAG+AGG | 0.592600 | 4_3:+30080109 | None:intergenic |
| ATGGAAGGGAGCCTTCAAAA+GGG | 0.595602 | 4_3:-30078922 | Msa0637720:CDS |
| TTCAAAAGCTCAAACGGGGA+GGG | 0.595743 | 4_3:-30084478 | Msa0637720:five_prime_UTR |
| AGGATAGACTACCTTAGGAA+TGG | 0.608535 | 4_3:+30082990 | None:intergenic |
| TACAATTACTCATCATGGAA+GGG | 0.609584 | 4_3:-30078936 | Msa0637720:CDS |
| GTTTGCACTAGTGATACTTG+AGG | 0.610703 | 4_3:+30083338 | None:intergenic |
| AGCACTACTAATTTCTCCAT+CGG | 0.616818 | 4_3:-30083363 | Msa0637720:CDS |
| TGCGAGAAATGAAAAGCCTG+TGG | 0.616964 | 4_3:-30083562 | Msa0637720:CDS |
| CCCAGTACCCTAATGGTCGG+TGG | 0.618099 | 4_3:-30078883 | Msa0637720:CDS |
| ATGCCCAGTACCCTAATGGT+CGG | 0.618899 | 4_3:-30078886 | Msa0637720:CDS |
| AATTCAAGAGGAAAGTGCAC+GGG | 0.623483 | 4_3:+30080121 | None:intergenic |
| AGTGATACTTGAGGGACCGA+TGG | 0.623508 | 4_3:+30083347 | None:intergenic |
| ACAAGCCAAGAGAGCCTGCA+CGG | 0.624808 | 4_3:+30083053 | None:intergenic |
| AGAGAGAGAGAAGTTAACAA+AGG | 0.629372 | 4_3:+30084453 | None:intergenic |
| ATTCAAAAGCTCAAACGGGG+AGG | 0.630838 | 4_3:-30084479 | Msa0637720:five_prime_UTR |
| CATCAGGGTGAATGTCGAGA+TGG | 0.631557 | 4_3:+30081166 | None:intergenic |
| CTGTTTGTAGAAAAGAACAT+AGG | 0.634054 | 4_3:+30078799 | None:intergenic |
| TGGAAGAGGAAGATGCAACA+AGG | 0.634962 | 4_3:+30084308 | None:intergenic |
| GCATGCTGTTATGCATGCTA+AGG | 0.640605 | 4_3:-30083130 | Msa0637720:CDS |
| GGTTACGAAAAGACGAAATG+TGG | 0.643377 | 4_3:+30084610 | None:intergenic |
| CCTTTCCAGAGACCGATGCT+CGG | 0.644404 | 4_3:+30081082 | None:intergenic |
| CAATTCAAGAGGAAAGTGCA+CGG | 0.646305 | 4_3:+30080120 | None:intergenic |
| TGATGCTGTTCACACCATTG+AGG | 0.657974 | 4_3:-30081148 | Msa0637720:CDS |
| AAGATGAAACCAGATCATTG+TGG | 0.658086 | 4_3:-30083599 | Msa0637720:CDS |
| TGGAGCAGAGAACAGGTGCA+GGG | 0.664257 | 4_3:+30081122 | None:intergenic |
| GCTAAGGATCTTCAGCCTCG+AGG | 0.673728 | 4_3:-30083114 | Msa0637720:CDS |
| AATTTCTGAGAATCACGGAG+AGG | 0.675867 | 4_3:+30083450 | None:intergenic |
| GTAATTCAAAAGCTCAAACG+GGG | 0.676234 | 4_3:-30084482 | Msa0637720:five_prime_UTR |
| CAATGGTGTGAACAGCATCA+GGG | 0.677442 | 4_3:+30081151 | None:intergenic |
| GCTTGTTTCACCATATACTG+AGG | 0.678531 | 4_3:-30080080 | Msa0637720:intron |
| GGTTTGTGTATAGAGAAAGG+AGG | 0.685198 | 4_3:+30084360 | None:intergenic |
| GGACATCTTCAAACATAACA+GGG | 0.689713 | 4_3:+30082614 | None:intergenic |
| ACTCAATTTGACATGCCAAG+CGG | 0.702135 | 4_3:-30082691 | Msa0637720:CDS |
| CCAGAGTTAATAAGGCCTCG+AGG | 0.730888 | 4_3:+30083099 | None:intergenic |
| TCATGGTCTAGATAACAAGG+AGG | 0.741433 | 4_3:+30078579 | None:intergenic |
| AAAGGGAGTAGATATCAACA+GGG | 0.750009 | 4_3:+30078756 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAATAAATAATGATA+TGG | + | chr4_3:30081868-30081887 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTAATTTTTTCT+TGG | + | chr4_3:30082252-30082271 | None:intergenic | 10.0% |
| !!! | AAAAATTGATATATTTTTTC+AGG | - | chr4_3:30082848-30082867 | Msa0637720:intron | 10.0% |
| !!! | ATTTTAAATTTTTAAGAGTT+TGG | - | chr4_3:30084059-30084078 | Msa0637720:intron | 10.0% |
| !!! | TTGTTTTATTTTGTTTGAAA+TGG | - | chr4_3:30079218-30079237 | Msa0637720:intron | 15.0% |
| !!! | TTATTACTGTGTAATTTTTT+AGG | - | chr4_3:30080347-30080366 | Msa0637720:intron | 15.0% |
| !!! | TATTTATTTTTTTCCTTTTC+AGG | - | chr4_3:30081874-30081893 | Msa0637720:intron | 15.0% |
| !! | GTATTCAAAACTAAATTAAA+GGG | + | chr4_3:30082049-30082068 | None:intergenic | 15.0% |
| !! | TGTATTCAAAACTAAATTAA+AGG | + | chr4_3:30082050-30082069 | None:intergenic | 15.0% |
| !! | GTTTATTTGAAAAGAAAAAA+AGG | + | chr4_3:30082604-30082623 | None:intergenic | 15.0% |
| !!! | TATAGGTTCAATTATATTTT+TGG | - | chr4_3:30082658-30082677 | Msa0637720:CDS | 15.0% |
| !! | TAAATCTTAAATGTATGTAA+AGG | + | chr4_3:30083245-30083264 | None:intergenic | 15.0% |
| !! | AAGTAAATAAATACTCTATT+TGG | + | chr4_3:30083587-30083606 | None:intergenic | 15.0% |
| !!! | TGTTTTTAGTTGAAAACAAT+TGG | - | chr4_3:30078889-30078908 | Msa0637720:CDS | 20.0% |
| !!! | TTTTTAGTTTAATGTTCCTT+TGG | - | chr4_3:30078922-30078941 | Msa0637720:CDS | 20.0% |
| !! | TAATCAATTTGAATGTAATC+CGG | - | chr4_3:30079063-30079082 | Msa0637720:intron | 20.0% |
| !! | AAAACAACAAAACATTGAAA+AGG | + | chr4_3:30079205-30079224 | None:intergenic | 20.0% |
| !! | TAAAAAAATGTTGTCAATTG+CGG | + | chr4_3:30079406-30079425 | None:intergenic | 20.0% |
| !!! | AAAATGCTGATTTTGTTTTT+GGG | - | chr4_3:30079441-30079460 | Msa0637720:intron | 20.0% |
| !! | ATATATGTCCATAGAAAATT+GGG | + | chr4_3:30080789-30080808 | None:intergenic | 20.0% |
| !! | AAAACCATTACAGTTTAAAA+TGG | + | chr4_3:30080816-30080835 | None:intergenic | 20.0% |
| !! | TCATGAAAATAATTGAGAAA+TGG | - | chr4_3:30080839-30080858 | Msa0637720:intron | 20.0% |
| !! | GAAATTTATACACAATATTC+AGG | - | chr4_3:30081217-30081236 | Msa0637720:intron | 20.0% |
| !!! | TGTAATTTTTATGATACTCA+TGG | - | chr4_3:30081315-30081334 | Msa0637720:intron | 20.0% |
| !! | AAAATACCATTTAATTCTGA+GGG | + | chr4_3:30081551-30081570 | None:intergenic | 20.0% |
| !!! | TCAGAATTAAATGGTATTTT+CGG | - | chr4_3:30081551-30081570 | Msa0637720:CDS | 20.0% |
| !!! | TACAATTTTCAAAAGGAATA+AGG | - | chr4_3:30082101-30082120 | Msa0637720:intron | 20.0% |
| !!! | TAATTTTTTCTTGGTTTTGT+GGG | + | chr4_3:30082243-30082262 | None:intergenic | 20.0% |
| !!! | TTAATTTTTTCTTGGTTTTG+TGG | + | chr4_3:30082244-30082263 | None:intergenic | 20.0% |
| !! | AATAGATATGATATCAACTT+CGG | + | chr4_3:30082704-30082723 | None:intergenic | 20.0% |
| !!! | AATTGATATATTTTTTCAGG+CGG | - | chr4_3:30082851-30082870 | Msa0637720:intron | 20.0% |
| !! | GAAGATCTAATTAAAAAGAA+TGG | - | chr4_3:30083391-30083410 | Msa0637720:CDS | 20.0% |
| !! | ATCTAATTAAAAAGAATGGA+TGG | - | chr4_3:30083395-30083414 | Msa0637720:CDS | 20.0% |
| !! | ACCTGTTAAATTACATTTAT+TGG | - | chr4_3:30083631-30083650 | Msa0637720:intron | 20.0% |
| !!! | ATTTAAAATTACTATTCTGC+AGG | + | chr4_3:30084048-30084067 | None:intergenic | 20.0% |
| !! | AAAAACTATCTTGTAAGATA+GGG | - | chr4_3:30084377-30084396 | Msa0637720:five_prime_UTR | 20.0% |
| !!! | AGACAATTTTGTTTTCGTTT+TGG | + | chr4_3:30078530-30078549 | None:intergenic | 25.0% |
| ! | AATTGAAGAGAATGAAAAAG+AGG | + | chr4_3:30078769-30078788 | None:intergenic | 25.0% |
| ! | ACATGAAAATAAGCGAAAAA+TGG | + | chr4_3:30078848-30078867 | None:intergenic | 25.0% |
| ! | ACAATAACAAAACCCTAATT+CGG | + | chr4_3:30079043-30079062 | None:intergenic | 25.0% |
| ! | AATCAATTTGAATGTAATCC+GGG | - | chr4_3:30079064-30079083 | Msa0637720:intron | 25.0% |
| !! | TAGATTAACATTTTCTCCTT+CGG | + | chr4_3:30079161-30079180 | None:intergenic | 25.0% |
| ! | TATATTCTCATATGTAAGTC+CGG | - | chr4_3:30079255-30079274 | Msa0637720:intron | 25.0% |
| !! | AAATGCTATTTAGTACAAAG+TGG | - | chr4_3:30079336-30079355 | Msa0637720:intron | 25.0% |
| ! | AAAAAAATGTTGTCAATTGC+GGG | + | chr4_3:30079405-30079424 | None:intergenic | 25.0% |
| !!! | GAAAATGCTGATTTTGTTTT+TGG | - | chr4_3:30079440-30079459 | Msa0637720:intron | 25.0% |
| !! | CTTTAAATTTCTGAGAATCA+CGG | + | chr4_3:30079657-30079676 | None:intergenic | 25.0% |
| !! | TTTATAGTTTCTGTTACTTG+AGG | + | chr4_3:30079706-30079725 | None:intergenic | 25.0% |
| ! | ACAGAAACTATAAAAGAGAA+TGG | - | chr4_3:30079712-30079731 | Msa0637720:intron | 25.0% |
| ! | ATTTAACCAAGACTTGAAAA+AGG | - | chr4_3:30079936-30079955 | Msa0637720:intron | 25.0% |
| ! | ATAAATTCCCAGAGTTAATA+AGG | + | chr4_3:30080011-30080030 | None:intergenic | 25.0% |
| !! | TTGATCTTTTCTGATTACAA+GGG | + | chr4_3:30080310-30080329 | None:intergenic | 25.0% |
| !! | TTTGATCTTTTCTGATTACA+AGG | + | chr4_3:30080311-30080330 | None:intergenic | 25.0% |
| !!! | TACTGTGTAATTTTTTAGGT+TGG | - | chr4_3:30080351-30080370 | Msa0637720:intron | 25.0% |
| ! | CATATATGTCCATAGAAAAT+TGG | + | chr4_3:30080790-30080809 | None:intergenic | 25.0% |
| !! | ATTTTCTATGGACATATATG+TGG | - | chr4_3:30080790-30080809 | Msa0637720:intron | 25.0% |
| ! | TGAGAAATGGTTATGTTTAT+AGG | - | chr4_3:30080852-30080871 | Msa0637720:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr4_3:30080893-30080912 | None:intergenic | 25.0% |
| ! | TAGAAACTCTCAGTATATAT+GGG | + | chr4_3:30081015-30081034 | None:intergenic | 25.0% |
| ! | ATAGAAACTCTCAGTATATA+TGG | + | chr4_3:30081016-30081035 | None:intergenic | 25.0% |
| ! | ATATATACTGAGAGTTTCTA+TGG | - | chr4_3:30081015-30081034 | Msa0637720:intron | 25.0% |
| ! | TTGAGTAGAAAAGCTATTAA+AGG | + | chr4_3:30081123-30081142 | None:intergenic | 25.0% |
| ! | AACAAGAACATATAAGAGAA+AGG | + | chr4_3:30081155-30081174 | None:intergenic | 25.0% |
| ! | TTTATTCCCTCAGAATTAAA+TGG | - | chr4_3:30081542-30081561 | Msa0637720:CDS | 25.0% |
| ! | GAAAATACCATTTAATTCTG+AGG | + | chr4_3:30081552-30081571 | None:intergenic | 25.0% |
| !! | AAATTTTACAACATCTTGGT+GGG | + | chr4_3:30081671-30081690 | None:intergenic | 25.0% |
| !! | AAAATTTTACAACATCTTGG+TGG | + | chr4_3:30081672-30081691 | None:intergenic | 25.0% |
| !! | ACGAAAATTTTACAACATCT+TGG | + | chr4_3:30081675-30081694 | None:intergenic | 25.0% |
| !! | TAGCACTTACAATTTTCAAA+AGG | - | chr4_3:30082094-30082113 | Msa0637720:intron | 25.0% |
| ! | CAAAGCTAATACTTAAATTG+AGG | + | chr4_3:30082447-30082466 | None:intergenic | 25.0% |
| ! | CAAAGCTAATACTTAAATTG+AGG | + | chr4_3:30082447-30082466 | None:intergenic | 25.0% |
| ! | AGCTAGAAATAATACTCAAA+GGG | - | chr4_3:30082563-30082582 | Msa0637720:intron | 25.0% |
| !! | GAAAAAAAGGTATATAAAGC+AGG | + | chr4_3:30082591-30082610 | None:intergenic | 25.0% |
| ! | TCATATCTATTACTAAGATG+TGG | - | chr4_3:30082713-30082732 | Msa0637720:CDS | 25.0% |
| !!! | ATTGATATATTTTTTCAGGC+GGG | - | chr4_3:30082852-30082871 | Msa0637720:intron | 25.0% |
| ! | TCAATCAAATAACTTTCTCT+TGG | - | chr4_3:30083081-30083100 | Msa0637720:CDS | 25.0% |
| ! | TAATTCCCACGAAAAAAATT+AGG | + | chr4_3:30083182-30083201 | None:intergenic | 25.0% |
| !!! | CTCTAATCAAATTGCTTTTA+AGG | - | chr4_3:30083265-30083284 | Msa0637720:CDS | 25.0% |
| ! | TAAGGCTTCACAAAATAATT+AGG | - | chr4_3:30083283-30083302 | Msa0637720:CDS | 25.0% |
| !!! | CTTTTTAATTAGATCTTCCA+GGG | + | chr4_3:30083389-30083408 | None:intergenic | 25.0% |
| !!! | TCTTTTTAATTAGATCTTCC+AGG | + | chr4_3:30083390-30083409 | None:intergenic | 25.0% |
| !!! | TGCATTGATTGAAACTATAT+TGG | - | chr4_3:30083472-30083491 | Msa0637720:CDS | 25.0% |
| ! | GCCAATAAATGTAATTTAAC+AGG | + | chr4_3:30083635-30083654 | None:intergenic | 25.0% |
| ! | CAGTTTATTAGTTGTTAAGT+TGG | + | chr4_3:30083825-30083844 | None:intergenic | 25.0% |
| !!! | ACCAAATATGATAATGCTTT+TGG | - | chr4_3:30083972-30083991 | Msa0637720:intron | 25.0% |
| !!! | CCAAATATGATAATGCTTTT+GGG | - | chr4_3:30083973-30083992 | Msa0637720:intron | 25.0% |
| ! | GTAATGATTGAAAGACATAA+TGG | - | chr4_3:30084092-30084111 | Msa0637720:intron | 25.0% |
| ! | GAAAAACTATCTTGTAAGAT+AGG | - | chr4_3:30084376-30084395 | Msa0637720:five_prime_UTR | 25.0% |
| !!! | TTTTCGTTTTGGTTTTTGAG+GGG | + | chr4_3:30078519-30078538 | None:intergenic | 30.0% |
| !!! | GTTTTCGTTTTGGTTTTTGA+GGG | + | chr4_3:30078520-30078539 | None:intergenic | 30.0% |
| !!! | TGTTTTCGTTTTGGTTTTTG+AGG | + | chr4_3:30078521-30078540 | None:intergenic | 30.0% |
| GAAGAAGAAGATGAAGAAAA+GGG | + | chr4_3:30078578-30078597 | None:intergenic | 30.0% | |
| AGAAGAAGAAGATGAAGAAA+AGG | + | chr4_3:30078579-30078598 | None:intergenic | 30.0% | |
| TGGTAATTCAAAAGCTCAAA+CGG | - | chr4_3:30078615-30078634 | Msa0637720:three_prime_UTR | 30.0% | |
| ! | AAATCAAAAGGTAGGGTTTT+TGG | + | chr4_3:30078718-30078737 | None:intergenic | 30.0% |
| AGTTGAAAACAATTGGTCAA+AGG | - | chr4_3:30078896-30078915 | Msa0637720:CDS | 30.0% | |
| AAATAACAAGCTCAAACCAA+AGG | + | chr4_3:30078941-30078960 | None:intergenic | 30.0% | |
| !!! | TGGTTTGAGCTTGTTATTTT+TGG | - | chr4_3:30078942-30078961 | Msa0637720:CDS | 30.0% |
| CTTGTGATGAATCATGAATT+AGG | - | chr4_3:30079013-30079032 | Msa0637720:intron | 30.0% | |
| TGAATTAGGAATACCGAATT+AGG | - | chr4_3:30079027-30079046 | Msa0637720:intron | 30.0% | |
| GAATTAGGAATACCGAATTA+GGG | - | chr4_3:30079028-30079047 | Msa0637720:intron | 30.0% | |
| ATCAATTTGAATGTAATCCG+GGG | - | chr4_3:30079065-30079084 | Msa0637720:intron | 30.0% | |
| !!! | CTGATTTTGTTTTTGGGTTT+GGG | - | chr4_3:30079447-30079466 | Msa0637720:intron | 30.0% |
| CGTGATTCTCAGAAATTTAA+AGG | - | chr4_3:30079655-30079674 | Msa0637720:intron | 30.0% | |
| CAGAAATTTAAAGGAGTGAA+CGG | - | chr4_3:30079664-30079683 | Msa0637720:intron | 30.0% | |
| GTTACACCAATTGATGAAAA+TGG | - | chr4_3:30079811-30079830 | Msa0637720:intron | 30.0% | |
| TTGAAGAACGTGTTCAAAAA+TGG | - | chr4_3:30079886-30079905 | Msa0637720:intron | 30.0% | |
| !!! | GATACAGATTCTTTTGAGTT+TGG | - | chr4_3:30080450-30080469 | Msa0637720:intron | 30.0% |
| ! | TGTCCTGAAAAATTTTACTC+CGG | - | chr4_3:30080503-30080522 | Msa0637720:intron | 30.0% |
| AATTAAATTGTCACCAACCT+TGG | + | chr4_3:30080555-30080574 | None:intergenic | 30.0% | |
| TTCGACTAAAAAAGTGGTTA+TGG | + | chr4_3:30080689-30080708 | None:intergenic | 30.0% | |
| AATCACAATCAGTATGTTTC+TGG | - | chr4_3:30080730-30080749 | Msa0637720:intron | 30.0% | |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr4_3:30080894-30080913 | None:intergenic | 30.0% |
| TTATAGCAACATACACATCA+AGG | - | chr4_3:30080914-30080933 | Msa0637720:intron | 30.0% | |
| !!! | TTAGAAGCCCTCTTTTTTTT+AGG | - | chr4_3:30081076-30081095 | Msa0637720:intron | 30.0% |
| GCAAACTCCTAAAAAAAAGA+GGG | + | chr4_3:30081086-30081105 | None:intergenic | 30.0% | |
| TGCAAACTCCTAAAAAAAAG+AGG | + | chr4_3:30081087-30081106 | None:intergenic | 30.0% | |
| GTATAAATTTCGAGACATGA+TGG | + | chr4_3:30081208-30081227 | None:intergenic | 30.0% | |
| TTTCTTAGGTATGATGTGAT+TGG | - | chr4_3:30081278-30081297 | Msa0637720:intron | 30.0% | |
| !!! | ATCTTTTCTAGTTTCTTCTG+TGG | - | chr4_3:30081457-30081476 | Msa0637720:intron | 30.0% |
| GTAACAGCAGATTTATTCTT+TGG | + | chr4_3:30081509-30081528 | None:intergenic | 30.0% | |
| AGAATAAATCTGCTGTTACA+AGG | - | chr4_3:30081510-30081529 | Msa0637720:intron | 30.0% | |
| ! | GAATTAAATGGTATTTTCGG+AGG | - | chr4_3:30081554-30081573 | Msa0637720:CDS | 30.0% |
| CTTTAGTTATCACCAAACTT+TGG | + | chr4_3:30081586-30081605 | None:intergenic | 30.0% | |
| ! | CAAAGTTTGGTGATAACTAA+AGG | - | chr4_3:30081584-30081603 | Msa0637720:CDS | 30.0% |
| ATAAAAAATGGCAATGAAGG+GGG | + | chr4_3:30081786-30081805 | None:intergenic | 30.0% | |
| GATAAAAAATGGCAATGAAG+GGG | + | chr4_3:30081787-30081806 | None:intergenic | 30.0% | |
| CGATAAAAAATGGCAATGAA+GGG | + | chr4_3:30081788-30081807 | None:intergenic | 30.0% | |
| !!! | CCTTCATTGCCATTTTTTAT+CGG | - | chr4_3:30081786-30081805 | Msa0637720:intron | 30.0% |
| TTCAAAAGGAATAAGGACAA+TGG | - | chr4_3:30082108-30082127 | Msa0637720:intron | 30.0% | |
| GTAAGAAATGCCAACTATTT+AGG | + | chr4_3:30082170-30082189 | None:intergenic | 30.0% | |
| TTTCTTACTCGAAAAAGTCT+TGG | - | chr4_3:30082182-30082201 | Msa0637720:intron | 30.0% | |
| ! | ATACCCAACACTTCAATTTT+AGG | - | chr4_3:30082213-30082232 | Msa0637720:intron | 30.0% |
| ! | ATACCCAACACTTCAATTTT+GGG | + | chr4_3:30082213-30082232 | None:intergenic | 30.0% |
| AATACTTAAATTGAGGTAGG+TGG | + | chr4_3:30082440-30082459 | None:intergenic | 30.0% | |
| GCTAATACTTAAATTGAGGT+AGG | + | chr4_3:30082443-30082462 | None:intergenic | 30.0% | |
| AATACTTAAATTGAGGTAGG+TGG | + | chr4_3:30082440-30082459 | None:intergenic | 30.0% | |
| GCTAATACTTAAATTGAGGT+AGG | + | chr4_3:30082443-30082462 | None:intergenic | 30.0% | |
| GAGCTAGAAATAATACTCAA+AGG | - | chr4_3:30082562-30082581 | Msa0637720:intron | 30.0% | |
| GCTAGAAATAATACTCAAAG+GGG | - | chr4_3:30082564-30082583 | Msa0637720:intron | 30.0% | |
| TCGGTCTAACAATAACATAA+AGG | + | chr4_3:30082685-30082704 | None:intergenic | 30.0% | |
| TGATATCAACTACTAAGATG+TGG | + | chr4_3:30082757-30082776 | None:intergenic | 30.0% | |
| !!! | TTGATATATTTTTTCAGGCG+GGG | - | chr4_3:30082853-30082872 | Msa0637720:intron | 30.0% |
| AGGTGCAATATCATTACTTT+AGG | + | chr4_3:30082912-30082931 | None:intergenic | 30.0% | |
| TTTCCTCTTGAATTGGTATT+GGG | - | chr4_3:30082987-30083006 | Msa0637720:intron | 30.0% | |
| GATATGTTTACCTCAGTATA+TGG | + | chr4_3:30083032-30083051 | None:intergenic | 30.0% | |
| ! | GATTTTCAAAATGCAGTAAC+TGG | + | chr4_3:30083063-30083082 | None:intergenic | 30.0% |
| !!! | TACACTCCTAATTTTTTTCG+TGG | - | chr4_3:30083173-30083192 | Msa0637720:CDS | 30.0% |
| !!! | ACACTCCTAATTTTTTTCGT+GGG | - | chr4_3:30083174-30083193 | Msa0637720:CDS | 30.0% |
| ATTGAAACTATATTGGCCAA+GGG | - | chr4_3:30083479-30083498 | Msa0637720:CDS | 30.0% | |
| ! | CTATTTGGTGAAAAAACTTG+TGG | + | chr4_3:30083572-30083591 | None:intergenic | 30.0% |
| !!! | TTACTTTTTGAATGCTTCCT+TGG | - | chr4_3:30083601-30083620 | Msa0637720:CDS | 30.0% |
| CTAACCAAAAAAAATCTGCT+GGG | - | chr4_3:30083853-30083872 | Msa0637720:intron | 30.0% | |
| !! | CCCAAAAGCATTATCATATT+TGG | + | chr4_3:30083976-30083995 | None:intergenic | 30.0% |
| TACAATTACTCATCATGGAA+GGG | - | chr4_3:30084163-30084182 | Msa0637720:intron | 30.0% | |
| !! | CTTTGCTATTGCAACAAATA+AGG | - | chr4_3:30084262-30084281 | Msa0637720:intron | 30.0% |
| CTGTTTGTAGAAAAGAACAT+AGG | + | chr4_3:30084303-30084322 | None:intergenic | 30.0% | |
| ATGCGAGTGATTATTCATTA+AGG | - | chr4_3:30084432-30084451 | Msa0637720:five_prime_UTR | 30.0% | |
| ! | TTTTCATGGTCTAGATAACA+AGG | + | chr4_3:30084526-30084545 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTTTGAGGGGTTA+GGG | + | chr4_3:30078513-30078532 | None:intergenic | 35.0% |
| GGTAATTCAAAAGCTCAAAC+GGG | - | chr4_3:30078616-30078635 | Msa0637720:three_prime_UTR | 35.0% | |
| GTAATTCAAAAGCTCAAACG+GGG | - | chr4_3:30078617-30078636 | Msa0637720:three_prime_UTR | 35.0% | |
| AGAGAGAGAGAAGTTAACAA+AGG | + | chr4_3:30078649-30078668 | None:intergenic | 35.0% | |
| CTGTAATTGAAGACATGAAG+AGG | + | chr4_3:30078675-30078694 | None:intergenic | 35.0% | |
| AGGAGGAAAATCAAAAGGTA+GGG | + | chr4_3:30078725-30078744 | None:intergenic | 35.0% | |
| AAGGAGGAAAATCAAAAGGT+AGG | + | chr4_3:30078726-30078745 | None:intergenic | 35.0% | |
| GAGAAAGGAGGAAAATCAAA+AGG | + | chr4_3:30078730-30078749 | None:intergenic | 35.0% | |
| CAAGGTTTGTGTATAGAGAA+AGG | + | chr4_3:30078745-30078764 | None:intergenic | 35.0% | |
| AGAGAATGAAAAAGAGGACA+AGG | + | chr4_3:30078763-30078782 | None:intergenic | 35.0% | |
| TAAGCGAAAAATGGAACCTT+AGG | + | chr4_3:30078839-30078858 | None:intergenic | 35.0% | |
| !!! | GCTGATTTTGTTTTTGGGTT+TGG | - | chr4_3:30079446-30079465 | Msa0637720:intron | 35.0% |
| AAGATGAAACCAGATCATTG+TGG | - | chr4_3:30079500-30079519 | Msa0637720:intron | 35.0% | |
| AGATGAAACCAGATCATTGT+GGG | - | chr4_3:30079501-30079520 | Msa0637720:intron | 35.0% | |
| !!! | CTTTTTTACCCACAATGATC+TGG | + | chr4_3:30079512-30079531 | None:intergenic | 35.0% |
| AGCACTACTAATTTCTCCAT+CGG | - | chr4_3:30079736-30079755 | Msa0637720:intron | 35.0% | |
| TTTGCACTAGTGATACTTGA+GGG | + | chr4_3:30079763-30079782 | None:intergenic | 35.0% | |
| ! | GCAGTACCATTTTCATCAAT+TGG | + | chr4_3:30079820-30079839 | None:intergenic | 35.0% |
| CCAAACTCAAATTCGTAAAC+TGG | + | chr4_3:30079846-30079865 | None:intergenic | 35.0% | |
| ! | CCAGTTTACGAATTTGAGTT+TGG | - | chr4_3:30079843-30079862 | Msa0637720:intron | 35.0% |
| AACGTGTTCAAAAATGGTAG+TGG | - | chr4_3:30079892-30079911 | Msa0637720:intron | 35.0% | |
| !! | ACTTGAAAAAGGCACCTAAT+GGG | - | chr4_3:30079947-30079966 | Msa0637720:intron | 35.0% |
| ! | TCAGCAAATGCTTTTAGTGT+GGG | + | chr4_3:30080381-30080400 | None:intergenic | 35.0% |
| ! | TTCTTTAAGTTTACACCGCT+TGG | + | chr4_3:30080426-30080445 | None:intergenic | 35.0% |
| GGACATCTTCAAACATAACA+GGG | + | chr4_3:30080488-30080507 | None:intergenic | 35.0% | |
| AGGACATCTTCAAACATAAC+AGG | + | chr4_3:30080489-30080508 | None:intergenic | 35.0% | |
| ! | CATCCGGAGTAAAATTTTTC+AGG | + | chr4_3:30080509-30080528 | None:intergenic | 35.0% |
| ! | TATCTGAAAAGTCTTGTCCT+GGG | + | chr4_3:30080658-30080677 | None:intergenic | 35.0% |
| ! | ATATCTGAAAAGTCTTGTCC+TGG | + | chr4_3:30080659-30080678 | None:intergenic | 35.0% |
| CAACGATTCGACTAAAAAAG+TGG | + | chr4_3:30080695-30080714 | None:intergenic | 35.0% | |
| TGATTGTGATTGTGATCTAG+AGG | + | chr4_3:30080721-30080740 | None:intergenic | 35.0% | |
| CCATAGAAAATTGGGCAATT+AGG | + | chr4_3:30080781-30080800 | None:intergenic | 35.0% | |
| ! | CCTAATTGCCCAATTTTCTA+TGG | - | chr4_3:30080778-30080797 | Msa0637720:intron | 35.0% |
| !! | GTGGCCATTTTAAACTGTAA+TGG | - | chr4_3:30080809-30080828 | Msa0637720:intron | 35.0% |
| !!! | ACGCCCACTTATTTTTTAGA+AGG | - | chr4_3:30080887-30080906 | Msa0637720:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | - | chr4_3:30080974-30080993 | Msa0637720:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr4_3:30080980-30080999 | None:intergenic | 35.0% |
| ! | TGCAATGCACTCATTTTCTT+AGG | - | chr4_3:30081264-30081283 | Msa0637720:intron | 35.0% |
| ! | GATGTGATTGGTTGTGATAT+TGG | - | chr4_3:30081290-30081309 | Msa0637720:intron | 35.0% |
| TACAAAGCTCAGAAATTCCT+GGG | + | chr4_3:30081372-30081391 | None:intergenic | 35.0% | |
| TTACAAAGCTCAGAAATTCC+TGG | + | chr4_3:30081373-30081392 | None:intergenic | 35.0% | |
| ! | GGAATTTCTGAGCTTTGTAA+TGG | - | chr4_3:30081373-30081392 | Msa0637720:intron | 35.0% |
| TTCTGTGGAAGATGATGAAT+GGG | - | chr4_3:30081472-30081491 | Msa0637720:intron | 35.0% | |
| ATGATGAATGGGAAACAGTA+GGG | - | chr4_3:30081483-30081502 | Msa0637720:intron | 35.0% | |
| ! | TTGGTGATAACTAAAGGTAC+AGG | - | chr4_3:30081590-30081609 | Msa0637720:CDS | 35.0% |
| TTACAGCAAGGGAAAAAATG+TGG | + | chr4_3:30081759-30081778 | None:intergenic | 35.0% | |
| CCGATAAAAAATGGCAATGA+AGG | + | chr4_3:30081789-30081808 | None:intergenic | 35.0% | |
| !!! | CCATTTTTTATCGGAGCTTT+GGG | - | chr4_3:30081795-30081814 | Msa0637720:intron | 35.0% |
| TTACTCGAAAAAGTCTTGGT+TGG | - | chr4_3:30082186-30082205 | Msa0637720:intron | 35.0% | |
| TACTCGAAAAAGTCTTGGTT+GGG | - | chr4_3:30082187-30082206 | Msa0637720:intron | 35.0% | |
| ! | GTGCCTAAAATTGAAGTGTT+GGG | + | chr4_3:30082219-30082238 | None:intergenic | 35.0% |
| TGTGCCTAAAATTGAAGTGT+TGG | + | chr4_3:30082220-30082239 | None:intergenic | 35.0% | |
| ! | CATACCCAACACTTCAATTT+TGG | + | chr4_3:30082212-30082231 | None:intergenic | 35.0% |
| AAGAAGAGAAAGTCTTGGTT+GGG | + | chr4_3:30082373-30082392 | None:intergenic | 35.0% | |
| TAAGAAGAGAAAGTCTTGGT+TGG | + | chr4_3:30082374-30082393 | None:intergenic | 35.0% | |
| AGAGTAAGAAGAGAAAGTCT+TGG | + | chr4_3:30082378-30082397 | None:intergenic | 35.0% | |
| AAGACTTTCTCTTCTTACTC+TGG | - | chr4_3:30082377-30082396 | Msa0637720:intron | 35.0% | |
| AGACTTTCTCTTCTTACTCT+GGG | - | chr4_3:30082378-30082397 | Msa0637720:intron | 35.0% | |
| ! | TGTTAGGTGTCATATTTGGT+AGG | - | chr4_3:30082402-30082421 | Msa0637720:intron | 35.0% |
| ! | TGCAGATAAAGGTATGAACT+GGG | + | chr4_3:30082529-30082548 | None:intergenic | 35.0% |
| ! | ATGCAGATAAAGGTATGAAC+TGG | + | chr4_3:30082530-30082549 | None:intergenic | 35.0% |
| TACTAGACAGCAATGTACTT+TGG | - | chr4_3:30082790-30082809 | Msa0637720:intron | 35.0% | |
| ! | ATATTGCACCTAATGCGTTT+TGG | - | chr4_3:30082921-30082940 | Msa0637720:intron | 35.0% |
| TTCCATAACCAAAACGCATT+AGG | + | chr4_3:30082932-30082951 | None:intergenic | 35.0% | |
| CTTTCCTCTTGAATTGGTAT+TGG | - | chr4_3:30082986-30083005 | Msa0637720:intron | 35.0% | |
| TGGATTGTGATGATAAATGC+TGG | - | chr4_3:30083101-30083120 | Msa0637720:CDS | 35.0% | |
| TGTACCATTGAGAATAAAGC+AGG | + | chr4_3:30083157-30083176 | None:intergenic | 35.0% | |
| TTCGTGGGAATTAAATTCAC+AGG | - | chr4_3:30083189-30083208 | Msa0637720:CDS | 35.0% | |
| CGTCACATAATTTGAACGAA+AGG | + | chr4_3:30083313-30083332 | None:intergenic | 35.0% | |
| GATTGAAACTATATTGGCCA+AGG | - | chr4_3:30083478-30083497 | Msa0637720:CDS | 35.0% | |
| GGCTCAATTGATAAGTTACT+TGG | - | chr4_3:30083652-30083671 | Msa0637720:intron | 35.0% | |
| !!! | CCAGCAGATTTTTTTTGGTT+AGG | + | chr4_3:30083855-30083874 | None:intergenic | 35.0% |
| CCTAACCAAAAAAAATCTGC+TGG | - | chr4_3:30083852-30083871 | Msa0637720:intron | 35.0% | |
| ! | TTAAGAGTTTGGAGTCTTGA+TGG | - | chr4_3:30084070-30084089 | Msa0637720:intron | 35.0% |
| !! | ACTCGTTTTTATTCTTCTGC+AGG | - | chr4_3:30084118-30084137 | Msa0637720:intron | 35.0% |
| !! | CTCGTTTTTATTCTTCTGCA+GGG | - | chr4_3:30084119-30084138 | Msa0637720:intron | 35.0% |
| GTTGCTACAATTACTCATCA+TGG | - | chr4_3:30084158-30084177 | Msa0637720:intron | 35.0% | |
| CTACAATTACTCATCATGGA+AGG | - | chr4_3:30084162-30084181 | Msa0637720:intron | 35.0% | |
| AAAGGGAGTAGATATCAACA+GGG | + | chr4_3:30084346-30084365 | None:intergenic | 35.0% | |
| AAAAGGGAGTAGATATCAAC+AGG | + | chr4_3:30084347-30084366 | None:intergenic | 35.0% | |
| ! | GTTTTTCTCCAAGTGCAAAA+GGG | + | chr4_3:30084363-30084382 | None:intergenic | 35.0% |
| ! | AGTTTTTCTCCAAGTGCAAA+AGG | + | chr4_3:30084364-30084383 | None:intergenic | 35.0% |
| ! | CAGTTGATTAATGTTTTGCC+TGG | - | chr4_3:30084404-30084423 | Msa0637720:five_prime_UTR | 35.0% |
| TCTTATCACACACTCTAGAT+TGG | + | chr4_3:30084478-30084497 | None:intergenic | 35.0% | |
| ! | TAGGACTGCAAAACTTTTCA+TGG | + | chr4_3:30084540-30084559 | None:intergenic | 35.0% |
| ! | AAGTTTTGCAGTCCTAGTTT+AGG | - | chr4_3:30084544-30084563 | Msa0637720:five_prime_UTR | 35.0% |
| GGTTACGAAAAGACGAAATG+TGG | + | chr4_3:30078492-30078511 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTTTTTGAGGGGTT+AGG | + | chr4_3:30078514-30078533 | None:intergenic | 40.0% |
| ! | TTCTTCGTCGATGCTTCTTT+TGG | - | chr4_3:30078595-30078614 | Msa0637720:three_prime_UTR | 40.0% |
| GGTTTGTGTATAGAGAAAGG+AGG | + | chr4_3:30078742-30078761 | None:intergenic | 40.0% | |
| TATTGCTGAAGAGATGGAAG+AGG | + | chr4_3:30078808-30078827 | None:intergenic | 40.0% | |
| TGCTCATATTGCTGAAGAGA+TGG | + | chr4_3:30078814-30078833 | None:intergenic | 40.0% | |
| CAGCAATATGAGCAATCCTA+AGG | - | chr4_3:30078820-30078839 | Msa0637720:CDS | 40.0% | |
| ATTTGAATGTAATCCGGGGT+TGG | - | chr4_3:30079069-30079088 | Msa0637720:intron | 40.0% | |
| TTTGAATGTAATCCGGGGTT+GGG | - | chr4_3:30079070-30079089 | Msa0637720:intron | 40.0% | |
| !!! | AGCTCAACTGGTTTTAGCTA+AGG | - | chr4_3:30079094-30079113 | Msa0637720:intron | 40.0% |
| !!! | GCTCAACTGGTTTTAGCTAA+GGG | - | chr4_3:30079095-30079114 | Msa0637720:intron | 40.0% |
| !!! | CTGGTTTTAGCTAAGGGAAA+AGG | - | chr4_3:30079101-30079120 | Msa0637720:intron | 40.0% |
| TTAGCTAAGGGAAAAGGAGT+TGG | - | chr4_3:30079107-30079126 | Msa0637720:intron | 40.0% | |
| ! | TTAACATTTTCTCCTTCGGC+CGG | + | chr4_3:30079157-30079176 | None:intergenic | 40.0% |
| AGCATTTCGCAGAACAATAG+TGG | + | chr4_3:30079323-30079342 | None:intergenic | 40.0% | |
| GAGAAGAATCAGCTGCAATT+TGG | - | chr4_3:30079559-30079578 | Msa0637720:intron | 40.0% | |
| !! | TTTGGTGCTTTCGGTGAATT+TGG | + | chr4_3:30079622-30079641 | None:intergenic | 40.0% |
| ! | AATTTCTGAGAATCACGGAG+AGG | + | chr4_3:30079652-30079671 | None:intergenic | 40.0% |
| GTTTGCACTAGTGATACTTG+AGG | + | chr4_3:30079764-30079783 | None:intergenic | 40.0% | |
| GTTCTTCAAACTTTCAGCCT+CGG | + | chr4_3:30079875-30079894 | None:intergenic | 40.0% | |
| !! | GTGTTCAAAAATGGTAGTGG+TGG | - | chr4_3:30079895-30079914 | Msa0637720:intron | 40.0% |
| !!! | TAGGTGCCTTTTTCAAGTCT+TGG | + | chr4_3:30079945-30079964 | None:intergenic | 40.0% |
| !! | GACTTGAAAAAGGCACCTAA+TGG | - | chr4_3:30079946-30079965 | Msa0637720:intron | 40.0% |
| ! | TCCTTTTGTTCAGCTTTTGC+AGG | - | chr4_3:30080071-30080090 | Msa0637720:intron | 40.0% |
| TCCTGCAAAAGCTGAACAAA+AGG | + | chr4_3:30080075-30080094 | None:intergenic | 40.0% | |
| AGGATAGACTACCTTAGGAA+TGG | + | chr4_3:30080112-30080131 | None:intergenic | 40.0% | |
| GTTGTTGATATATGCAGCAG+AGG | + | chr4_3:30080132-30080151 | None:intergenic | 40.0% | |
| ! | CTCAGCAAATGCTTTTAGTG+TGG | + | chr4_3:30080382-30080401 | None:intergenic | 40.0% |
| ACTCAATTTGACATGCCAAG+CGG | - | chr4_3:30080408-30080427 | Msa0637720:intron | 40.0% | |
| ! | GAAATGCTATTTGGCACATC+CGG | + | chr4_3:30080525-30080544 | None:intergenic | 40.0% |
| GATGTGCCAAATAGCATTTC+AGG | - | chr4_3:30080525-30080544 | Msa0637720:intron | 40.0% | |
| GGTCTTCCTGAAATGCTATT+TGG | + | chr4_3:30080534-30080553 | None:intergenic | 40.0% | |
| ATAGCATTTCAGGAAGACCA+AGG | - | chr4_3:30080535-30080554 | Msa0637720:intron | 40.0% | |
| TGGGCAATTAGGATGCATAT+AGG | + | chr4_3:30080770-30080789 | None:intergenic | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | - | chr4_3:30080973-30080992 | Msa0637720:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr4_3:30080981-30081000 | None:intergenic | 40.0% |
| GACGAATTACTGAAGCTTGA+AGG | - | chr4_3:30081407-30081426 | Msa0637720:intron | 40.0% | |
| GGACAGTCTTCAAGTCTTAA+TGG | - | chr4_3:30081428-30081447 | Msa0637720:intron | 40.0% | |
| CTTCTGTGGAAGATGATGAA+TGG | - | chr4_3:30081471-30081490 | Msa0637720:intron | 40.0% | |
| GATGATGAATGGGAAACAGT+AGG | - | chr4_3:30081482-30081501 | Msa0637720:intron | 40.0% | |
| ! | ATCTTGGTGGGTATATGACA+AGG | + | chr4_3:30081659-30081678 | None:intergenic | 40.0% |
| !!! | GCCATTTTTTATCGGAGCTT+TGG | - | chr4_3:30081794-30081813 | Msa0637720:intron | 40.0% |
| CCCAAAGCTCCGATAAAAAA+TGG | + | chr4_3:30081798-30081817 | None:intergenic | 40.0% | |
| !! | ATCGGAGCTTTGGGATAAAA+AGG | - | chr4_3:30081804-30081823 | Msa0637720:intron | 40.0% |
| !! | TCGGAGCTTTGGGATAAAAA+GGG | - | chr4_3:30081805-30081824 | Msa0637720:intron | 40.0% |
| GGCAGATCTATTTCCTGAAA+AGG | + | chr4_3:30081890-30081909 | None:intergenic | 40.0% | |
| CAAGCGATATGGTTGATTAG+TGG | + | chr4_3:30081911-30081930 | None:intergenic | 40.0% | |
| ! | CATGGGCTATCCTAAATAGT+TGG | - | chr4_3:30082157-30082176 | Msa0637720:intron | 40.0% |
| TGTGCCCAAAATTGAAGTGT+TGG | - | chr4_3:30082340-30082359 | Msa0637720:intron | 40.0% | |
| ! | GTGCCCAAAATTGAAGTGTT+GGG | - | chr4_3:30082341-30082360 | Msa0637720:intron | 40.0% |
| TCTTCTTACTCTGGGTTGTT+AGG | - | chr4_3:30082386-30082405 | Msa0637720:intron | 40.0% | |
| ! | GGGTTGTTAGGTGTCATATT+TGG | - | chr4_3:30082398-30082417 | Msa0637720:intron | 40.0% |
| ! | TAGGTGTCATATTTGGTAGG+TGG | - | chr4_3:30082405-30082424 | Msa0637720:intron | 40.0% |
| AAGGTATGAACTGGGTTCTA+GGG | + | chr4_3:30082521-30082540 | None:intergenic | 40.0% | |
| ! | AAAGGTATGAACTGGGTTCT+AGG | + | chr4_3:30082522-30082541 | None:intergenic | 40.0% |
| CCACTGTATCATGCAGATAA+AGG | + | chr4_3:30082540-30082559 | None:intergenic | 40.0% | |
| CCTTTATCTGCATGATACAG+TGG | - | chr4_3:30082537-30082556 | Msa0637720:intron | 40.0% | |
| TTATCTGCATGATACAGTGG+CGG | - | chr4_3:30082540-30082559 | Msa0637720:intron | 40.0% | |
| CAATGTACTTTGGTTGTGCT+GGG | - | chr4_3:30082800-30082819 | Msa0637720:intron | 40.0% | |
| !!! | CACCTAATGCGTTTTGGTTA+TGG | - | chr4_3:30082927-30082946 | Msa0637720:intron | 40.0% |
| ! | AATTCAAGAGGAAAGTGCAC+GGG | + | chr4_3:30082981-30083000 | None:intergenic | 40.0% |
| ! | CAATTCAAGAGGAAAGTGCA+CGG | + | chr4_3:30082982-30083001 | None:intergenic | 40.0% |
| CAGTATATGGTGAAACAAGC+AGG | + | chr4_3:30083019-30083038 | None:intergenic | 40.0% | |
| GCTTGTTTCACCATATACTG+AGG | - | chr4_3:30083019-30083038 | Msa0637720:CDS | 40.0% | |
| ! | GCAACCTGCTTTATTCTCAA+TGG | - | chr4_3:30083150-30083169 | Msa0637720:CDS | 40.0% |
| ATTAGATCTTCCAGGGTGAT+GGG | + | chr4_3:30083382-30083401 | None:intergenic | 40.0% | |
| AATTAGATCTTCCAGGGTGA+TGG | + | chr4_3:30083383-30083402 | None:intergenic | 40.0% | |
| TTTAACAGGTCAACAGTCCA+AGG | + | chr4_3:30083621-30083640 | None:intergenic | 40.0% | |
| TAAATAAACTCTGCTGCGAG+AGG | - | chr4_3:30083716-30083735 | Msa0637720:intron | 40.0% | |
| AAATAAACTCTGCTGCGAGA+GGG | - | chr4_3:30083717-30083736 | Msa0637720:intron | 40.0% | |
| CCTTTAACTCCTTCAACCAT+TGG | + | chr4_3:30083769-30083788 | None:intergenic | 40.0% | |
| CCAATGGTTGAAGGAGTTAA+AGG | - | chr4_3:30083766-30083785 | Msa0637720:intron | 40.0% | |
| TGGTTGAAGGAGTTAAAGGA+CGG | - | chr4_3:30083770-30083789 | Msa0637720:intron | 40.0% | |
| ACCAAAAAAAATCTGCTGGG+AGG | - | chr4_3:30083856-30083875 | Msa0637720:intron | 40.0% | |
| CCAAAAAAAATCTGCTGGGA+GGG | - | chr4_3:30083857-30083876 | Msa0637720:intron | 40.0% | |
| ! | GAGGGTTTTACTTCGCAAAT+GGG | - | chr4_3:30083875-30083894 | Msa0637720:intron | 40.0% |
| CAGTATCTGAAAGCTGCATT+GGG | + | chr4_3:30083927-30083946 | None:intergenic | 40.0% | |
| TCAGTATCTGAAAGCTGCAT+TGG | + | chr4_3:30083928-30083947 | None:intergenic | 40.0% | |
| AATGCAGCTTTCAGATACTG+AGG | - | chr4_3:30083927-30083946 | Msa0637720:intron | 40.0% | |
| !! | AAATAAGGTGCTGCATGATC+AGG | - | chr4_3:30084277-30084296 | Msa0637720:intron | 40.0% |
| ! | TATCTACTCCCTTTTGCACT+TGG | - | chr4_3:30084352-30084371 | Msa0637720:five_prime_UTR | 40.0% |
| TCATGGTCTAGATAACAAGG+AGG | + | chr4_3:30084523-30084542 | None:intergenic | 40.0% | |
| ACATGTTCACGTCCTAAACT+AGG | + | chr4_3:30084559-30084578 | None:intergenic | 40.0% | |
| ATTCAAAAGCTCAAACGGGG+AGG | - | chr4_3:30078620-30078639 | Msa0637720:three_prime_UTR | 45.0% | |
| TTCAAAAGCTCAAACGGGGA+GGG | - | chr4_3:30078621-30078640 | Msa0637720:three_prime_UTR | 45.0% | |
| ATTACAGCGTCTCCTCTTTC+AGG | - | chr4_3:30078688-30078707 | Msa0637720:three_prime_UTR | 45.0% | |
| TTACAGCGTCTCCTCTTTCA+GGG | - | chr4_3:30078689-30078708 | Msa0637720:three_prime_UTR | 45.0% | |
| !! | GTTTTTGGAGACCCTGAAAG+AGG | + | chr4_3:30078703-30078722 | None:intergenic | 45.0% |
| TGGAAGAGGAAGATGCAACA+AGG | + | chr4_3:30078794-30078813 | None:intergenic | 45.0% | |
| ! | TAACATTTTCTCCTTCGGCC+GGG | + | chr4_3:30079156-30079175 | None:intergenic | 45.0% |
| !! | AGTCCGGTGTTGTCAAATAG+CGG | - | chr4_3:30079271-30079290 | Msa0637720:intron | 45.0% |
| GAACCGCTATTTGACAACAC+CGG | + | chr4_3:30079277-30079296 | None:intergenic | 45.0% | |
| ! | AAATAGCGGTTCTAGCGTAG+CGG | - | chr4_3:30079285-30079304 | Msa0637720:intron | 45.0% |
| GTGCTATAGCTGTAGCATAG+CGG | - | chr4_3:30079358-30079377 | Msa0637720:intron | 45.0% | |
| !!! | TTGTTTTTGGGTTTGGGAGC+AGG | - | chr4_3:30079453-30079472 | Msa0637720:intron | 45.0% |
| !! | TGGGAGCAGGTGTTACTATT+TGG | - | chr4_3:30079466-30079485 | Msa0637720:intron | 45.0% |
| TGCGAGAAATGAAAAGCCTG+TGG | - | chr4_3:30079537-30079556 | Msa0637720:intron | 45.0% | |
| !! | GGAGCACTATTTGGTGCTTT+CGG | + | chr4_3:30079631-30079650 | None:intergenic | 45.0% |
| ! | TTTGAGTTTGGATGCTTCCG+AGG | - | chr4_3:30079855-30079874 | Msa0637720:intron | 45.0% |
| TGCATAACAGCATGCCCATT+AGG | + | chr4_3:30079964-30079983 | None:intergenic | 45.0% | |
| GCATGCTGTTATGCATGCTA+AGG | - | chr4_3:30079969-30079988 | Msa0637720:intron | 45.0% | |
| !! | CTCGAGGCCTTATTAACTCT+GGG | - | chr4_3:30080001-30080020 | Msa0637720:intron | 45.0% |
| AAGAGCTCGTACCATTCCTA+AGG | - | chr4_3:30080098-30080117 | Msa0637720:CDS | 45.0% | |
| AGCAGAGGATAGACTACCTT+AGG | + | chr4_3:30080117-30080136 | None:intergenic | 45.0% | |
| CATTTCAGGAAGACCAAGGT+TGG | - | chr4_3:30080539-30080558 | Msa0637720:intron | 45.0% | |
| TTTATGCTACTCCCACGTAG+TGG | - | chr4_3:30080592-30080611 | Msa0637720:intron | 45.0% | |
| TTATGCTACTCCCACGTAGT+GGG | - | chr4_3:30080593-30080612 | Msa0637720:intron | 45.0% | |
| ! | CAAGTCTTATCCCACTACGT+GGG | + | chr4_3:30080606-30080625 | None:intergenic | 45.0% |
| ! | CTGTCTATCTGTCACTTCTG+TGG | - | chr4_3:30081695-30081714 | Msa0637720:CDS | 45.0% |
| AAGGGGGTGAATTACAGCAA+GGG | + | chr4_3:30081770-30081789 | None:intergenic | 45.0% | |
| TCGAGATGGATCAAGCGATA+TGG | + | chr4_3:30081922-30081941 | None:intergenic | 45.0% | |
| CAATGGTGTGAACAGCATCA+GGG | + | chr4_3:30081951-30081970 | None:intergenic | 45.0% | |
| TCAATGGTGTGAACAGCATC+AGG | + | chr4_3:30081952-30081971 | None:intergenic | 45.0% | |
| TGATGCTGTTCACACCATTG+AGG | - | chr4_3:30081951-30081970 | Msa0637720:intron | 45.0% | |
| TCTGCTCCAGAAACTCTTGA+AGG | - | chr4_3:30081991-30082010 | Msa0637720:intron | 45.0% | |
| CGGTAACCTTCAAGAGTTTC+TGG | + | chr4_3:30082000-30082019 | None:intergenic | 45.0% | |
| TCTTGAAGGTTACCGAGCAT+CGG | - | chr4_3:30082005-30082024 | Msa0637720:intron | 45.0% | |
| AGTGCAATGTGATGCATGCA+TGG | - | chr4_3:30082139-30082158 | Msa0637720:intron | 45.0% | |
| GTGCAATGTGATGCATGCAT+GGG | - | chr4_3:30082140-30082159 | Msa0637720:intron | 45.0% | |
| ! | AAGATGTGGTCTGAAGTCAC+TGG | - | chr4_3:30082727-30082746 | Msa0637720:CDS | 45.0% |
| GCAATGTACTTTGGTTGTGC+TGG | - | chr4_3:30082799-30082818 | Msa0637720:intron | 45.0% | |
| !!! | CGTTTTGGTTATGGAAGCCA+GGG | - | chr4_3:30082936-30082955 | Msa0637720:intron | 45.0% |
| CGTGCACTTTCCTCTTGAAT+TGG | - | chr4_3:30082980-30082999 | Msa0637720:intron | 45.0% | |
| CGACCCAATACCAATTCAAG+AGG | + | chr4_3:30082993-30083012 | None:intergenic | 45.0% | |
| !! | TAAATGCTGGCTTCCCTTTC+TGG | - | chr4_3:30083114-30083133 | Msa0637720:CDS | 45.0% |
| GTACTAGCAACCACCAGAAA+GGG | + | chr4_3:30083130-30083149 | None:intergenic | 45.0% | |
| TTAGATCTTCCAGGGTGATG+GGG | + | chr4_3:30083381-30083400 | None:intergenic | 45.0% | |
| AATAAACTCTGCTGCGAGAG+GGG | - | chr4_3:30083718-30083737 | Msa0637720:intron | 45.0% | |
| !! | GCTTAACTGGTTTGAGCCAA+TGG | - | chr4_3:30083750-30083769 | Msa0637720:intron | 45.0% |
| TGGTTTGAGCCAATGGTTGA+AGG | - | chr4_3:30083757-30083776 | Msa0637720:intron | 45.0% | |
| GGTTGAAGGAGTTAAAGGAC+GGG | - | chr4_3:30083771-30083790 | Msa0637720:intron | 45.0% | |
| GTTGAAGGAGTTAAAGGACG+GGG | - | chr4_3:30083772-30083791 | Msa0637720:intron | 45.0% | |
| TTGAAGGAGTTAAAGGACGG+GGG | - | chr4_3:30083773-30083792 | Msa0637720:intron | 45.0% | |
| !!! | CCCTCCCAGCAGATTTTTTT+TGG | + | chr4_3:30083860-30083879 | None:intergenic | 45.0% |
| ! | GGAGGGTTTTACTTCGCAAA+TGG | - | chr4_3:30083874-30083893 | Msa0637720:intron | 45.0% |
| ATGGAAGGGAGCCTTCAAAA+GGG | - | chr4_3:30084177-30084196 | Msa0637720:intron | 45.0% | |
| ! | GCTGTGTAATGCCCTTTTGA+AGG | + | chr4_3:30084191-30084210 | None:intergenic | 45.0% |
| TAATCACTCGCATCTTCTCC+AGG | + | chr4_3:30084425-30084444 | None:intergenic | 45.0% | |
| !! | AAAGTTAAATAATTTAATAT+AGG | - | chr4_3:30082641-30082660 | Msa0637720:CDS | 5.0% |
| GCTAAGGGAAAAGGAGTTGG+AGG | - | chr4_3:30079110-30079129 | Msa0637720:intron | 50.0% | |
| ! | TGCAGCTGATTCTTCTCCAC+AGG | + | chr4_3:30079556-30079575 | None:intergenic | 50.0% |
| GTGCTTTCGGTGAATTTGGC+AGG | + | chr4_3:30079618-30079637 | None:intergenic | 50.0% | |
| !! | TCACGGAGAGGAGCACTATT+TGG | + | chr4_3:30079640-30079659 | None:intergenic | 50.0% |
| AGTGATACTTGAGGGACCGA+TGG | + | chr4_3:30079755-30079774 | None:intergenic | 50.0% | |
| CCAGAGTTAATAAGGCCTCG+AGG | + | chr4_3:30080003-30080022 | None:intergenic | 50.0% | |
| !! | CCTCGAGGCCTTATTAACTC+TGG | - | chr4_3:30080000-30080019 | Msa0637720:intron | 50.0% |
| ! | CCAAGTCTTATCCCACTACG+TGG | + | chr4_3:30080607-30080626 | None:intergenic | 50.0% |
| ! | CCACGTAGTGGGATAAGACT+TGG | - | chr4_3:30080604-30080623 | Msa0637720:intron | 50.0% |
| ! | GAAAAGTCTTGTCCTGGGCA+GGG | + | chr4_3:30080653-30080672 | None:intergenic | 50.0% |
| ! | TGAAAAGTCTTGTCCTGGGC+AGG | + | chr4_3:30080654-30080673 | None:intergenic | 50.0% |
| CGGAGGACAACTCCAAAGTT+TGG | - | chr4_3:30081571-30081590 | Msa0637720:CDS | 50.0% | |
| GAAGGGGGTGAATTACAGCA+AGG | + | chr4_3:30081771-30081790 | None:intergenic | 50.0% | |
| CATCAGGGTGAATGTCGAGA+TGG | + | chr4_3:30081936-30081955 | None:intergenic | 50.0% | |
| !! | GAGTTTCTGGAGCAGAGAAC+AGG | + | chr4_3:30081987-30082006 | None:intergenic | 50.0% |
| TATTTGGTAGGTGGCACGCA+TGG | - | chr4_3:30082414-30082433 | Msa0637720:intron | 50.0% | |
| AGGTAGGTGGCGTATGAACT+GGG | + | chr4_3:30082478-30082497 | None:intergenic | 50.0% | |
| !!! | GCGTTTTGGTTATGGAAGCC+AGG | - | chr4_3:30082935-30082954 | Msa0637720:intron | 50.0% |
| !! | TAAGCAACTTGGTGCTTCCC+TGG | + | chr4_3:30082956-30082975 | None:intergenic | 50.0% |
| CGTACTAGCAACCACCAGAA+AGG | + | chr4_3:30083131-30083150 | None:intergenic | 50.0% | |
| ! | TAGATCTTCCAGGGTGATGG+GGG | + | chr4_3:30083380-30083399 | None:intergenic | 50.0% |
| ATAAACTCTGCTGCGAGAGG+GGG | - | chr4_3:30083719-30083738 | Msa0637720:intron | 50.0% | |
| GGGGGTTCAAATCTCAGTGA+AGG | - | chr4_3:30083791-30083810 | Msa0637720:intron | 50.0% | |
| CATGGAAGGGAGCCTTCAAA+AGG | - | chr4_3:30084176-30084195 | Msa0637720:intron | 50.0% | |
| ATGCCCAGTACCCTAATGGT+CGG | - | chr4_3:30084213-30084232 | Msa0637720:intron | 50.0% | |
| GAAAAGGAGTTGGAGGTCCG+AGG | - | chr4_3:30079117-30079136 | Msa0637720:intron | 55.0% | |
| CGGGTTTGAACTCACGACCT+CGG | + | chr4_3:30079137-30079156 | None:intergenic | 55.0% | |
| CGAGGTCGTGAGTTCAAACC+CGG | - | chr4_3:30079135-30079154 | Msa0637720:intron | 55.0% | |
| GCTAAGGATCTTCAGCCTCG+AGG | - | chr4_3:30079985-30080004 | Msa0637720:intron | 55.0% | |
| CTTCCTTAGTGCAACCGTGC+AGG | - | chr4_3:30080032-30080051 | Msa0637720:intron | 55.0% | |
| ACAAGCCAAGAGAGCCTGCA+CGG | + | chr4_3:30080049-30080068 | None:intergenic | 55.0% | |
| TATGCTACTCTTCCCTGCCC+AGG | - | chr4_3:30080638-30080657 | Msa0637720:intron | 55.0% | |
| GGCATCTTCTTGCCTGAGAG+TGG | + | chr4_3:30081351-30081370 | None:intergenic | 55.0% | |
| TCTCAGGCAAGAAGATGCCC+AGG | - | chr4_3:30081352-30081371 | Msa0637720:intron | 55.0% | |
| TGGAGCAGAGAACAGGTGCA+GGG | + | chr4_3:30081980-30081999 | None:intergenic | 55.0% | |
| CCTTTCCAGAGACCGATGCT+CGG | + | chr4_3:30082020-30082039 | None:intergenic | 55.0% | |
| GAGGTAGGTGGCGTATGAAC+TGG | + | chr4_3:30082479-30082498 | None:intergenic | 55.0% | |
| GTGCACGGGCTTAAGCAACT+TGG | + | chr4_3:30082967-30082986 | None:intergenic | 55.0% | |
| !! | ATGCTGGCTTCCCTTTCTGG+TGG | - | chr4_3:30083117-30083136 | Msa0637720:CDS | 55.0% |
| !! | AGATCTTCCAGGGTGATGGG+GGG | + | chr4_3:30083379-30083398 | None:intergenic | 55.0% |
| CGTGACAACTGCTCTACCCT+TGG | + | chr4_3:30083498-30083517 | None:intergenic | 55.0% | |
| TAAACTCTGCTGCGAGAGGG+GGG | - | chr4_3:30083720-30083739 | Msa0637720:intron | 55.0% | |
| GCTGATGCCCAGTACCCTAA+TGG | - | chr4_3:30084209-30084228 | Msa0637720:intron | 55.0% | |
| ! | CCACCGACCATTAGGGTACT+GGG | + | chr4_3:30084219-30084238 | None:intergenic | 55.0% |
| ATCGCAGCCACCGACCATTA+GGG | + | chr4_3:30084226-30084245 | None:intergenic | 55.0% | |
| AATCGCAGCCACCGACCATT+AGG | + | chr4_3:30084227-30084246 | None:intergenic | 55.0% | |
| CCAGTTGAGCTACCCAACCC+CGG | + | chr4_3:30079085-30079104 | None:intergenic | 60.0% | |
| GTGAGTTCAAACCCGGCCGA+AGG | - | chr4_3:30079142-30079161 | Msa0637720:intron | 60.0% | |
| GAGCCTGCACGGTTGCACTA+AGG | + | chr4_3:30080038-30080057 | None:intergenic | 60.0% | |
| TGCAACCGTGCAGGCTCTCT+TGG | - | chr4_3:30080041-30080060 | Msa0637720:intron | 60.0% | |
| ! | GGTACCAACGTGCCACTCTC+AGG | - | chr4_3:30081336-30081355 | Msa0637720:intron | 60.0% |
| CTTGCCTGAGAGTGGCACGT+TGG | + | chr4_3:30081343-30081362 | None:intergenic | 60.0% | |
| ! | CAGGTGCAGGGCATCCTCAA+TGG | + | chr4_3:30081968-30081987 | None:intergenic | 60.0% |
| CTGGAGCAGAGAACAGGTGC+AGG | + | chr4_3:30081981-30082000 | None:intergenic | 60.0% | |
| !! | GGTTACCGAGCATCGGTCTC+TGG | - | chr4_3:30082012-30082031 | Msa0637720:intron | 60.0% |
| !! | CCGAGCATCGGTCTCTGGAA+AGG | - | chr4_3:30082017-30082036 | Msa0637720:intron | 60.0% |
| TAGTACTCCCCCCATCACCC+TGG | - | chr4_3:30083369-30083388 | Msa0637720:CDS | 60.0% | |
| GGGGGGTTGGGTAGCTTAAC+TGG | - | chr4_3:30083737-30083756 | Msa0637720:intron | 60.0% | |
| CCCAGTACCCTAATGGTCGG+TGG | - | chr4_3:30084216-30084235 | Msa0637720:intron | 60.0% | |
| GCCACCGACCATTAGGGTAC+TGG | + | chr4_3:30084220-30084239 | None:intergenic | 60.0% | |
| CCGGGGTTGGGTAGCTCAAC+TGG | - | chr4_3:30079082-30079101 | Msa0637720:intron | 65.0% | |
| TCTGCTGCGAGAGGGGGGTT+GGG | - | chr4_3:30083725-30083744 | Msa0637720:intron | 65.0% | |
| CTCTGCTGCGAGAGGGGGGT+TGG | - | chr4_3:30083724-30083743 | Msa0637720:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 30078472 | 30084649 | 30078472 | ID=Msa0637720;Name=Msa0637720 |
| chr4_3 | mRNA | 30078472 | 30084649 | 30078472 | ID=Msa0637720-mRNA-1;Parent=Msa0637720;Name=Msa0637720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=355|0.83|0.85|1|1|1|7|321|511 |
| chr4_3 | exon | 30078472 | 30078981 | 30078472 | ID=Msa0637720-mRNA-1:exon:7256;Parent=Msa0637720-mRNA-1 |
| chr4_3 | exon | 30080081 | 30080251 | 30080081 | ID=Msa0637720-mRNA-1:exon:7255;Parent=Msa0637720-mRNA-1 |
| chr4_3 | exon | 30081083 | 30081225 | 30081083 | ID=Msa0637720-mRNA-1:exon:7254;Parent=Msa0637720-mRNA-1 |
| chr4_3 | exon | 30081516 | 30081763 | 30081516 | ID=Msa0637720-mRNA-1:exon:7253;Parent=Msa0637720-mRNA-1 |
| chr4_3 | exon | 30082628 | 30082752 | 30082628 | ID=Msa0637720-mRNA-1:exon:7252;Parent=Msa0637720-mRNA-1 |
| chr4_3 | exon | 30083002 | 30083646 | 30083002 | ID=Msa0637720-mRNA-1:exon:7251;Parent=Msa0637720-mRNA-1 |
| chr4_3 | exon | 30084280 | 30084649 | 30084280 | ID=Msa0637720-mRNA-1:exon:7250;Parent=Msa0637720-mRNA-1 |
| chr4_3 | five_prime_UTR | 30084295 | 30084649 | 30084295 | ID=Msa0637720-mRNA-1:five_prime_utr;Parent=Msa0637720-mRNA-1 |
| chr4_3 | CDS | 30084280 | 30084294 | 30084280 | ID=Msa0637720-mRNA-1:cds;Parent=Msa0637720-mRNA-1 |
| chr4_3 | CDS | 30083002 | 30083646 | 30083002 | ID=Msa0637720-mRNA-1:cds;Parent=Msa0637720-mRNA-1 |
| chr4_3 | CDS | 30082628 | 30082752 | 30082628 | ID=Msa0637720-mRNA-1:cds;Parent=Msa0637720-mRNA-1 |
| chr4_3 | CDS | 30081516 | 30081763 | 30081516 | ID=Msa0637720-mRNA-1:cds;Parent=Msa0637720-mRNA-1 |
| chr4_3 | CDS | 30081083 | 30081225 | 30081083 | ID=Msa0637720-mRNA-1:cds;Parent=Msa0637720-mRNA-1 |
| chr4_3 | CDS | 30080081 | 30080251 | 30080081 | ID=Msa0637720-mRNA-1:cds;Parent=Msa0637720-mRNA-1 |
| chr4_3 | CDS | 30078793 | 30078981 | 30078793 | ID=Msa0637720-mRNA-1:cds;Parent=Msa0637720-mRNA-1 |
| chr4_3 | three_prime_UTR | 30078472 | 30078792 | 30078472 | ID=Msa0637720-mRNA-1:three_prime_utr;Parent=Msa0637720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
