AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598500 MtrunA17_Chr4g0021641 92.481 266 5 1 1 251 1 266 0.0 506
Msa0598500 MtrunA17_Chr2g0324201 73.529 238 47 2 28 249 19 256 7.30e-130 367
Msa0598500 MtrunA17_Chr2g0324221 74.561 228 43 1 37 249 31 258 1.08e-129 367
Msa0598500 MtrunA17_Chr7g0231221 45.714 210 110 4 44 249 66 275 8.80e-64 200
Msa0598500 MtrunA17_Chr4g0012801 43.868 212 110 5 44 251 60 266 4.19e-59 188
Msa0598500 MtrunA17_Chr7g0231211 44.019 209 111 4 44 249 65 270 1.22e-57 184
Msa0598500 MtrunA17_Chr4g0057091 34.234 222 118 9 44 250 54 262 1.74e-28 108
Msa0598500 MtrunA17_Chr5g0398271 34.234 222 118 10 44 250 55 263 5.74e-28 107
Msa0598500 MtrunA17_Chr4g0038741 31.100 209 135 5 45 249 40 243 4.24e-26 102
Msa0598500 MtrunA17_Chr7g0218741 31.707 246 130 9 31 249 19 253 4.83e-26 102
Msa0598500 MtrunA17_Chr1g0157061 33.032 221 121 10 44 249 33 241 1.10e-24 98.2
Msa0598500 MtrunA17_Chr4g0024971 30.811 185 81 5 80 222 4 183 4.75e-24 95.9
Msa0598500 MtrunA17_Chr3g0092071 33.333 213 118 9 44 244 43 243 4.87e-24 96.7
Msa0598500 MtrunA17_Chr7g0218761 32.727 220 124 9 42 249 5 212 6.76e-24 95.5
Msa0598500 MtrunA17_Chr8g0360041 30.798 263 141 10 9 249 11 254 8.29e-24 96.3
Msa0598500 MtrunA17_Chr4g0055061 30.739 257 147 13 9 245 3 248 8.29e-24 96.3
Msa0598500 MtrunA17_Chr1g0193631 30.992 242 137 10 27 249 27 257 1.03e-23 96.3
Msa0598500 MtrunA17_Chr7g0218751 31.797 217 124 8 45 249 47 251 1.67e-23 95.5
Msa0598500 MtrunA17_Chr5g0399811 29.224 219 140 7 38 249 41 251 1.93e-23 95.5
Msa0598500 MtrunA17_Chr7g0217661 34.300 207 120 9 44 246 44 238 5.03e-23 94.0
Msa0598500 MtrunA17_Chr7g0271001 30.894 246 140 10 23 249 20 254 1.27e-22 93.2
Msa0598500 MtrunA17_Chr4g0021561 31.481 216 122 10 45 246 51 254 1.40e-22 93.2
Msa0598500 MtrunA17_Chr5g0417701 32.394 213 120 9 44 244 43 243 1.46e-21 90.1
Msa0598500 MtrunA17_Chr3g0128801 32.093 215 122 9 44 246 49 251 1.61e-21 90.1
Msa0598500 MtrunA17_Chr4g0055601 29.333 225 137 9 34 247 36 249 1.87e-21 90.1
Msa0598500 MtrunA17_Chr3g0128791 31.925 213 121 9 44 244 49 249 8.53e-21 88.2
Msa0598500 MtrunA17_Chr4g0069711 29.358 218 127 9 44 246 77 282 1.04e-19 85.9
Msa0598500 MtrunA17_Chr5g0432611 31.604 212 121 9 44 243 47 246 1.16e-19 85.1
Msa0598500 MtrunA17_Chr4g0055561 25.194 258 176 8 1 249 1 250 1.25e-19 85.1
Msa0598500 MtrunA17_Chr4g0042521 30.986 213 123 9 44 244 43 243 1.29e-19 85.1
Msa0598500 MtrunA17_Chr5g0433841 30.556 216 125 8 44 246 59 262 1.39e-19 85.1
Msa0598500 MtrunA17_Chr8g0360721 30.876 217 126 8 45 249 17 221 1.69e-19 84.0
Msa0598500 MtrunA17_Chr5g0435311 29.924 264 153 12 3 246 53 304 2.81e-19 85.1
Msa0598500 MtrunA17_Chr3g0107291 29.717 212 125 9 44 243 56 255 9.04e-18 80.1
Msa0598500 MtrunA17_Chr7g0238681 30.876 217 124 11 44 246 50 254 4.98e-17 78.2
Msa0598500 MtrunA17_Chr3g0107311 29.245 212 126 9 44 243 50 249 9.15e-17 77.4
Msa0598500 MtrunA17_Chr2g0328261 29.954 217 126 11 44 246 52 256 1.44e-16 77.0
Msa0598500 MtrunA17_Chr6g0453341 29.858 211 132 7 44 250 56 254 4.95e-16 75.1
Msa0598500 MtrunA17_Chr4g0031621 31.579 209 111 12 16 204 16 212 6.27e-14 69.3
Msa0598500 MtrunA17_Chr3g0109801 28.054 221 129 8 45 246 73 282 5.65e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598500 AT4G28250.1 68.800 250 62 2 16 249 11 260 5.52e-126 358
Msa0598500 AT4G28250.2 67.200 250 60 3 16 249 11 254 2.83e-120 343
Msa0598500 AT2G20750.1 70.476 210 58 2 44 249 58 267 4.77e-111 320
Msa0598500 AT4G28250.4 65.775 187 43 2 16 187 11 191 1.12e-82 246
Msa0598500 AT4G28250.3 65.775 187 43 2 16 187 11 191 1.19e-82 246
Msa0598500 AT2G20750.2 70.068 147 41 1 44 187 58 204 1.76e-73 223
Msa0598500 AT1G65680.1 47.368 209 107 3 44 249 65 273 2.61e-69 214
Msa0598500 AT3G60570.2 43.333 210 115 4 42 249 2 209 8.54e-63 196
Msa0598500 AT3G60570.1 39.370 254 137 6 11 249 6 257 4.18e-61 193
Msa0598500 AT2G45110.1 39.200 250 131 6 20 249 11 259 1.90e-56 181
Msa0598500 AT1G65681.1 41.905 210 115 5 44 249 16 222 5.31e-52 169
Msa0598500 AT4G17030.1 32.857 210 130 6 43 247 44 247 2.05e-27 106
Msa0598500 AT1G12560.1 32.727 220 121 8 44 249 55 261 7.54e-27 105
Msa0598500 AT4G38400.1 31.579 190 120 5 62 245 59 244 6.46e-25 99.8
Msa0598500 AT2G40610.1 35.377 212 114 9 44 243 48 248 7.20e-25 99.4
Msa0598500 AT3G15370.2 35.648 216 117 10 42 246 73 277 1.85e-24 99.0
Msa0598500 AT3G15370.1 35.981 214 115 10 44 246 45 247 2.27e-24 98.2
Msa0598500 AT1G62980.1 33.484 221 119 9 44 249 49 256 4.08e-24 97.4
Msa0598500 AT5G05290.1 31.925 213 120 9 44 243 50 250 3.16e-23 95.1
Msa0598500 AT3G45970.2 29.717 212 137 7 41 245 11 217 4.14e-23 94.4
Msa0598500 AT5G39290.1 32.093 215 124 8 45 249 77 279 6.11e-23 95.1
Msa0598500 AT5G39270.1 30.672 238 128 9 37 249 54 279 7.58e-23 94.7
Msa0598500 AT5G56320.1 32.093 215 122 9 44 246 47 249 2.72e-22 92.8
Msa0598500 AT5G56320.2 32.093 215 122 9 44 246 47 249 2.72e-22 92.8
Msa0598500 AT2G03090.1 32.558 215 121 9 44 246 48 250 2.94e-22 92.4
Msa0598500 AT5G56320.3 32.093 215 122 9 44 246 47 249 6.61e-22 92.4
Msa0598500 AT3G45960.1 30.220 182 117 5 62 237 10 187 4.55e-21 88.6
Msa0598500 AT3G45960.2 30.220 182 117 5 62 237 58 235 6.40e-21 89.4
Msa0598500 AT3G45970.1 30.366 191 122 6 62 245 58 244 4.73e-20 87.0
Msa0598500 AT5G39280.1 30.556 216 126 9 45 249 73 275 5.64e-20 86.7
Msa0598500 AT4G01630.1 28.226 248 147 10 22 249 19 255 6.83e-20 86.3
Msa0598500 AT5G02260.1 28.571 217 129 9 44 246 50 254 7.79e-20 86.3
Msa0598500 AT5G39300.1 30.093 216 127 9 45 249 74 276 1.14e-19 85.9
Msa0598500 AT5G39260.1 31.280 211 126 9 45 249 65 262 1.25e-19 85.5
Msa0598500 AT3G29030.1 32.524 206 122 9 44 244 56 249 1.71e-19 85.1
Msa0598500 AT3G03220.1 30.093 216 126 6 44 246 58 261 2.29e-19 85.1
Msa0598500 AT2G37640.1 28.854 253 148 11 14 246 18 258 1.18e-18 83.2
Msa0598500 AT1G69530.2 30.986 213 123 9 44 244 45 245 1.67e-18 82.4
Msa0598500 AT1G69530.1 30.986 213 123 9 44 244 45 245 1.67e-18 82.4
Msa0598500 AT2G37640.2 29.493 217 127 9 44 246 29 233 1.75e-18 82.0
Msa0598500 AT1G69530.3 30.986 213 123 9 44 244 45 245 2.22e-18 82.4
Msa0598500 AT3G55500.1 30.415 217 125 11 44 246 52 256 3.93e-18 81.6
Msa0598500 AT2G39700.1 31.336 217 123 11 44 246 49 253 4.60e-18 81.3
Msa0598500 AT1G26770.1 30.660 212 123 9 44 243 44 243 3.25e-17 79.0
Msa0598500 AT1G26770.2 30.660 212 123 9 44 243 54 253 3.89e-17 79.0
Msa0598500 AT1G20190.1 29.864 221 128 9 44 249 44 252 6.63e-17 78.2
Msa0598500 AT4G38210.1 26.728 217 133 8 44 246 48 252 1.33e-15 74.3
Msa0598500 AT1G69530.4 33.526 173 91 9 44 204 45 205 2.46e-15 73.2
Msa0598500 AT2G28950.1 29.084 251 146 13 16 246 15 253 1.33e-13 68.9
Msa0598500 AT5G39310.1 28.571 217 130 11 45 249 109 312 2.17e-13 68.9

Find 122 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTATTGGTGGACCTTTA+AGG 0.121240 4_2:-34684679 Msa0598500:CDS
GCCTCAGATAGGAGCTAAAT+TGG 0.240083 4_2:+34688358 None:intergenic
ATGAAGGTTCCACACCATTT+TGG 0.241028 4_2:-34686401 Msa0598500:CDS
GACCTCAGCGGTGCTGCTTT+TGG 0.243260 4_2:-34687652 Msa0598500:CDS
ACAGAGAATGGTCCCCTTAA+AGG 0.251845 4_2:+34684665 None:intergenic
CAGCACCGCTGAGGTCAAAA+TGG 0.279998 4_2:+34687659 None:intergenic
GTGGTGTCAGTTGGGCAGCC+TGG 0.282084 4_2:+34687682 None:intergenic
TTCAGCTCTGCAAGGAATTA+AGG 0.291284 4_2:+34684174 None:intergenic
ACACGCTCTCTCTCCAGTTT+TGG 0.297811 4_2:+34684207 None:intergenic
GGTGCAAATTGGTGCATTAT+TGG 0.308201 4_2:-34684692 Msa0598500:CDS
AATTGCACAAGGGCATTAAA+TGG 0.317788 4_2:-34684319 Msa0598500:three_prime_UTR
CATTATTGGTGGACCTTTAA+GGG 0.321218 4_2:-34684678 Msa0598500:CDS
GAAGATGCAGAGGGAGATAT+TGG 0.322570 4_2:-34686357 Msa0598500:CDS
CTAGTTAATTAATTAAAGTT+TGG 0.327213 4_2:-34684457 Msa0598500:three_prime_UTR
TGGTGTCAGTTGGGCAGCCT+GGG 0.333933 4_2:+34687683 None:intergenic
ACCAAGGCTCCTTCCTATAG+TGG 0.335513 4_2:-34684502 Msa0598500:three_prime_UTR
GAGGGCGAGGGTAGGGGCAG+TGG 0.337642 4_2:-34687818 Msa0598500:CDS
CATGTAGCCCTCTCCAAAAC+TGG 0.345429 4_2:-34684220 Msa0598500:three_prime_UTR
GAGATGTTGTTCCTAGCAAT+TGG 0.359807 4_2:-34684604 Msa0598500:CDS
CGTGAAGCTCGCCATGCTTC+CGG 0.366001 4_2:-34688316 Msa0598500:CDS
ACTAGAAGTGATAACCAAAA+TGG 0.367256 4_2:+34686387 None:intergenic
TAAAACACAACCTTTGCAAT+TGG 0.373153 4_2:-34684539 Msa0598500:three_prime_UTR
GAACAACATCTCTAGCTGAT+AGG 0.376276 4_2:+34684615 None:intergenic
TAACACACCATAATAAAATT+AGG 0.385942 4_2:+34684260 None:intergenic
TTATTATGGTGTGTTATTGT+TGG 0.395137 4_2:-34684253 Msa0598500:three_prime_UTR
GCCCCTACCCTCGCCCTCAA+TGG 0.395548 4_2:+34687823 None:intergenic
ATCATCTGTGGGGTGCAAAT+TGG 0.407156 4_2:-34684703 Msa0598500:CDS
AATGCCCTTGTGCAATTCAA+TGG 0.409598 4_2:+34684325 None:intergenic
AGCCATTGAGGGCGAGGGTA+GGG 0.417453 4_2:-34687825 Msa0598500:CDS
CGAGAAGTGTAAGTGGCCTT+TGG 0.426749 4_2:+34684578 None:intergenic
CGGAAGCATGGCGAGCTTCA+CGG 0.426871 4_2:+34688317 None:intergenic
AGTATTCTTTAAAGTCCAAC+TGG 0.428064 4_2:+34684138 None:intergenic
ATTGCATTTCATGTTAATGA+AGG 0.430261 4_2:-34686417 Msa0598500:CDS
GCCATTGAGGGCGAGGGTAG+GGG 0.437817 4_2:-34687824 Msa0598500:CDS
TAGATATATATAGCAAACTA+AGG 0.442150 4_2:+34684384 None:intergenic
CAAACTTTAATTAATTAACT+AGG 0.442906 4_2:+34684458 None:intergenic
ATTTAAAGACATTCAAAGGT+TGG 0.444255 4_2:+34684109 None:intergenic
TAATTAATTAAAGTTTGGTT+AGG 0.454999 4_2:-34684452 Msa0598500:three_prime_UTR
GTGAATTAGGTGGAGCTTGT+GGG 0.465048 4_2:-34687870 Msa0598500:intron
AGATGTTGTTCCTAGCAATT+GGG 0.466992 4_2:-34684603 Msa0598500:CDS
CTTCCGGCTGCCACCGCGGT+TGG 0.467249 4_2:-34688300 Msa0598500:CDS
AAACTAAGGGAAAGAGAGTT+GGG 0.468055 4_2:+34684398 None:intergenic
TTATGGTGTGTTATTGTTGG+TGG 0.468886 4_2:-34684250 Msa0598500:three_prime_UTR
TTAGGTGGAGCTTGTGGGTA+TGG 0.479923 4_2:-34687865 Msa0598500:intron
AACTGGAGAGAGAGCGTGTA+GGG 0.484316 4_2:-34684203 Msa0598500:three_prime_UTR
TAGACAATAGCATATGTTCA+AGG 0.484691 4_2:-34687738 Msa0598500:CDS
AGAACTCCGTGTAAATATCC+AGG 0.486166 4_2:-34686447 Msa0598500:CDS
TGTCCAACCGCGGTGGCAGC+CGG 0.486551 4_2:+34688297 None:intergenic
AACAACATCTCTAGCTGATA+GGG 0.486552 4_2:+34684616 None:intergenic
CAAAATGGGTGGTGTCAGTT+GGG 0.487132 4_2:+34687674 None:intergenic
TAAAATTTAAAGACATTCAA+AGG 0.489377 4_2:+34684105 None:intergenic
GGTTATTAATAACCCACTAT+AGG 0.493961 4_2:+34684489 None:intergenic
CGCGGTGGCAGCCGGAAGCA+TGG 0.494520 4_2:+34688305 None:intergenic
TCAAAATGGGTGGTGTCAGT+TGG 0.498024 4_2:+34687673 None:intergenic
CAAACTAAGGGAAAGAGAGT+TGG 0.504470 4_2:+34684397 None:intergenic
AAGCCATTGAGGGCGAGGGT+AGG 0.505967 4_2:-34687826 Msa0598500:CDS
TCCTAGCAATTGGGTTCCAA+AGG 0.508249 4_2:-34684594 Msa0598500:CDS
TCCCCTTTCATAAACAGCAC+TGG 0.510386 4_2:+34687793 None:intergenic
GAAGCAGAAAAGCCTCAGAT+AGG 0.511638 4_2:+34688347 None:intergenic
GACCAGTGCTGTTTATGAAA+GGG 0.512227 4_2:-34687795 Msa0598500:CDS
AGGGCGAGGGTAGGGGCAGT+GGG 0.514219 4_2:-34687817 Msa0598500:CDS
TTAATTAACTAGGTAAAATG+TGG 0.518656 4_2:+34684468 None:intergenic
GAGCTGAGTTTAACAGAGAA+TGG 0.520854 4_2:+34684653 None:intergenic
AAGAGAAACAAGAAAAGAGA+AGG 0.523477 4_2:+34684295 None:intergenic
TGGTGGACGTGAAGCCATTG+AGG 0.525762 4_2:-34687837 Msa0598500:CDS
AGCTTGTGGGTATGGAACAT+TGG 0.530049 4_2:-34687857 Msa0598500:CDS
AGCACCGCTGAGGTCAAAAT+GGG 0.530672 4_2:+34687660 None:intergenic
TGTGAATTAGGTGGAGCTTG+TGG 0.538467 4_2:-34687871 Msa0598500:intron
TATGGCTATCTCCGGTGAGA+AGG 0.540158 4_2:-34687626 Msa0598500:CDS
ACGTGAAGCCATTGAGGGCG+AGG 0.541645 4_2:-34687831 Msa0598500:CDS
CTCGACTTACATTGGTATCC+CGG 0.543011 4_2:-34688258 Msa0598500:intron
CTATAGGAAGGAGCCTTGGT+TGG 0.543126 4_2:+34684505 None:intergenic
GGACCAGTGCTGTTTATGAA+AGG 0.546468 4_2:-34687796 Msa0598500:CDS
TTTGGACATATGGCTATCTC+CGG 0.546777 4_2:-34687634 Msa0598500:CDS
ATGGCTATCTCCGGTGAGAA+GGG 0.550564 4_2:-34687625 Msa0598500:CDS
GGTGGACGTGAAGCCATTGA+GGG 0.556631 4_2:-34687836 Msa0598500:CDS
GCAAATTGGTGCATTATTGG+TGG 0.562847 4_2:-34684689 Msa0598500:CDS
TGCAGAATGGTTCTAGTGAG+TGG 0.562862 4_2:-34684736 Msa0598500:intron
TCTAGCTGATAGGGTTCTAC+CGG 0.567735 4_2:+34684625 None:intergenic
GCCTTTGGAACCCAATTGCT+AGG 0.569430 4_2:+34684593 None:intergenic
CCCACTATAGGAAGGAGCCT+TGG 0.572754 4_2:+34684501 None:intergenic
TCTTAGTTGACCCTTCTCAC+CGG 0.574534 4_2:+34687615 None:intergenic
ATCATACTCTCGACTTACAT+TGG 0.575731 4_2:-34688266 Msa0598500:CDS
ACCAGTGCTGTTTATGAAAG+GGG 0.580566 4_2:-34687794 Msa0598500:CDS
ATTAATAACCCACTATAGGA+AGG 0.584565 4_2:+34684493 None:intergenic
CCAAGGCTCCTTCCTATAGT+GGG 0.586391 4_2:-34684501 Msa0598500:three_prime_UTR
GGCTACAAATGAATCATCTG+TGG 0.590028 4_2:-34684715 Msa0598500:CDS
ATTATTGGTGGACCTTTAAG+GGG 0.593123 4_2:-34684677 Msa0598500:CDS
ATAATCACTGACGAGTGCCC+AGG 0.594245 4_2:-34687700 Msa0598500:CDS
TCAGATAGGAGCTAAATTGG+AGG 0.595128 4_2:+34688361 None:intergenic
TTTACCTTCGGTAAATGACA+GGG 0.595497 4_2:+34687578 None:intergenic
CATGCTTCCGGCTGCCACCG+CGG 0.596105 4_2:-34688304 Msa0598500:CDS
TCCAATTTAGCTCCTATCTG+AGG 0.598649 4_2:-34688359 Msa0598500:CDS
AGCTGATAGGGTTCTACCGG+TGG 0.602382 4_2:+34684628 None:intergenic
AGTTGAATTTGAAGATGCAG+AGG 0.603522 4_2:-34686367 Msa0598500:CDS
GTGCTGTTTATGAAAGGGGA+AGG 0.604394 4_2:-34687790 Msa0598500:CDS
ATTTAGGCGAGAAGTGTAAG+TGG 0.607247 4_2:+34684571 None:intergenic
GTTGAATTTGAAGATGCAGA+GGG 0.613537 4_2:-34686366 Msa0598500:CDS
TACACACGTTCAGCTCTGCA+AGG 0.617166 4_2:+34684166 None:intergenic
AGATATATATAGCAAACTAA+GGG 0.618851 4_2:+34684385 None:intergenic
CGTGAAGCCATTGAGGGCGA+GGG 0.618982 4_2:-34687830 Msa0598500:CDS
AAGTGATAACCAAAATGGTG+TGG 0.620271 4_2:+34686392 None:intergenic
GAGGATACATAACTTGAGGT+AGG 0.621641 4_2:+34684055 None:intergenic
GCTACAAATGAATCATCTGT+GGG 0.632745 4_2:-34684714 Msa0598500:CDS
TGATGAGGATACATAACTTG+AGG 0.632902 4_2:+34684051 None:intergenic
TCAAGCCATTGAATTGCACA+AGG 0.633952 4_2:-34684330 Msa0598500:three_prime_UTR
ACCGCTGAGGTCAAAATGGG+TGG 0.634095 4_2:+34687663 None:intergenic
GAACTCCGTGTAAATATCCA+GGG 0.635650 4_2:-34686446 Msa0598500:CDS
GTCCAAAAGCAGCACCGCTG+AGG 0.643386 4_2:+34687650 None:intergenic
GTTAAACTCAGCTCTACCAC+CGG 0.650609 4_2:-34684644 Msa0598500:CDS
AAATCCCTGTCATTTACCGA+AGG 0.656353 4_2:-34687582 Msa0598500:intron
TTTATGAAAGGGGAAGGATG+TGG 0.665300 4_2:-34687784 Msa0598500:CDS
CTGAAGTTGTCCAACCGCGG+TGG 0.668940 4_2:+34688290 None:intergenic
AACGTGTGTAGTGAGCCAGT+TGG 0.707077 4_2:-34684153 Msa0598500:three_prime_UTR
TTGTGGGTATGGAACATTGG+TGG 0.710549 4_2:-34687854 Msa0598500:CDS
AAACTGGAGAGAGAGCGTGT+AGG 0.712707 4_2:-34684204 Msa0598500:three_prime_UTR
AAGGGTCAACTAAGAAACCG+CGG 0.722148 4_2:-34687607 Msa0598500:CDS
GGTACAAAAGAAACCAACCA+AGG 0.722942 4_2:-34684518 Msa0598500:three_prime_UTR
CAAGCCATTGAATTGCACAA+GGG 0.732771 4_2:-34684329 Msa0598500:three_prime_UTR
AAATGACAGGGATTTGACCG+CGG 0.740391 4_2:+34687590 None:intergenic
ATGCTGAAGTTGTCCAACCG+CGG 0.752656 4_2:+34688287 None:intergenic
CTACAAATGAATCATCTGTG+GGG 0.791175 4_2:-34684713 Msa0598500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTACTTTTATGAATAT+TGG - chr4_2:34684863-34684882 Msa0598500:intron 10.0%
!! TAATTAATGTATTTATTTGT+TGG - chr4_2:34685526-34685545 Msa0598500:intron 10.0%
!! AATTAATGTATTTATTTGTT+GGG - chr4_2:34685527-34685546 Msa0598500:intron 10.0%
!!! TCTAATGTTTATTATTTTTT+TGG - chr4_2:34686125-34686144 Msa0598500:intron 10.0%
!!! TAATATTAAGAAATTTTAAG+TGG - chr4_2:34686329-34686348 Msa0598500:intron 10.0%
!!! AATTTTTTATATCATATATG+TGG - chr4_2:34686390-34686409 Msa0598500:CDS 10.0%
!! TTTATAAATATGATGTTATT+TGG + chr4_2:34686508-34686527 None:intergenic 10.0%
!! TCATCAAAATTCAAAATTTA+AGG + chr4_2:34685143-34685162 None:intergenic 15.0%
!!! TAAACATATTTTTTTACACA+AGG - chr4_2:34685203-34685222 Msa0598500:intron 15.0%
!!! TATTTAGACAAATATTTTTG+TGG - chr4_2:34685362-34685381 Msa0598500:intron 15.0%
!!! ATAAATCATTTTTCCTTAAA+AGG + chr4_2:34685776-34685795 None:intergenic 15.0%
!! ATTCATTTAGATATATCTTT+GGG + chr4_2:34686164-34686183 None:intergenic 15.0%
!! TATTCATTTAGATATATCTT+TGG + chr4_2:34686165-34686184 None:intergenic 15.0%
!!! AGTTAAATATTTCCAAATTT+TGG - chr4_2:34687011-34687030 Msa0598500:intron 15.0%
!!! GTTAAATATTTCCAAATTTT+GGG - chr4_2:34687012-34687031 Msa0598500:intron 15.0%
!!! TTAAATATTTCCAAATTTTG+GGG - chr4_2:34687013-34687032 Msa0598500:intron 15.0%
!! CATTAATAACAAATTATGAA+TGG + chr4_2:34687480-34687499 None:intergenic 15.0%
!! CAAACTTTAATTAATTAACT+AGG + chr4_2:34687966-34687985 None:intergenic 15.0%
!! CTAGTTAATTAATTAAAGTT+TGG - chr4_2:34687964-34687983 Msa0598500:intron 15.0%
!! TAATTAATTAAAGTTTGGTT+AGG - chr4_2:34687969-34687988 Msa0598500:intron 15.0%
!! TAAAATTTAAAGACATTCAA+AGG + chr4_2:34688319-34688338 None:intergenic 15.0%
!!! CATAAAAGTAATTTTACCTT+CGG + chr4_2:34684858-34684877 None:intergenic 20.0%
!! TAGACAATGTATAATAGATT+TGG - chr4_2:34684940-34684959 Msa0598500:intron 20.0%
!!! TGTACAATCAAAATTTTTGA+AGG + chr4_2:34685070-34685089 None:intergenic 20.0%
!!! TTCTAACTTTGAAGATTTTT+TGG + chr4_2:34685181-34685200 None:intergenic 20.0%
!!! TTTTAATATGCGTTTGATTA+AGG - chr4_2:34685482-34685501 Msa0598500:intron 20.0%
!! TTTAATATGCGTTTGATTAA+GGG - chr4_2:34685483-34685502 Msa0598500:intron 20.0%
!!! CATCTTAATTTTTTGTTCTT+TGG - chr4_2:34685707-34685726 Msa0598500:intron 20.0%
!! ATTTAATCCACAAAACAAAA+AGG + chr4_2:34685894-34685913 None:intergenic 20.0%
!! AATAAAGAACAATTTGATAG+AGG - chr4_2:34686181-34686200 Msa0598500:intron 20.0%
!!! ATTAAGAAATTTTAAGTGGT+AGG - chr4_2:34686333-34686352 Msa0598500:intron 20.0%
!! TGTAATTGCATCATATTTAT+AGG + chr4_2:34686485-34686504 None:intergenic 20.0%
!! TTCAGTGTAATTATAAATGT+CGG + chr4_2:34686903-34686922 None:intergenic 20.0%
!! TTTCGAATTATTAGTTATGT+TGG - chr4_2:34686936-34686955 Msa0598500:intron 20.0%
!! ACACTTATACTCTATTTAAA+TGG + chr4_2:34687104-34687123 None:intergenic 20.0%
!!! GAAATGTTATTTAAAGATGT+AGG + chr4_2:34687225-34687244 None:intergenic 20.0%
!! ATGAATTATTTGATCTGATT+TGG + chr4_2:34687312-34687331 None:intergenic 20.0%
!!! AAATGCATCTTTTAAGATAT+TGG + chr4_2:34687397-34687416 None:intergenic 20.0%
!! TATATACTCATTAGATTTAG+AGG + chr4_2:34687424-34687443 None:intergenic 20.0%
!!! ATTGTATTTTTATTGCAGAA+TGG - chr4_2:34687672-34687691 Msa0598500:CDS 20.0%
!! TTAATTAACTAGGTAAAATG+TGG + chr4_2:34687956-34687975 None:intergenic 20.0%
!! AGATATATATAGCAAACTAA+GGG + chr4_2:34688039-34688058 None:intergenic 20.0%
!! TAGATATATATAGCAAACTA+AGG + chr4_2:34688040-34688059 None:intergenic 20.0%
!!! TTGTATGCCTAATTTTATTA+TGG - chr4_2:34688154-34688173 Msa0598500:intron 20.0%
!! TAACACACCATAATAAAATT+AGG + chr4_2:34688164-34688183 None:intergenic 20.0%
!! TTTATCTATAAAGCACTCAA+CGG + chr4_2:34684389-34684408 None:intergenic 25.0%
! AGATAAATACTCAATGTATC+TGG - chr4_2:34684402-34684421 Msa0598500:three_prime_UTR 25.0%
! ATTACAACTAATACTCACTT+CGG + chr4_2:34684486-34684505 None:intergenic 25.0%
! GTTAATAATAGTGAGTATGT+TGG - chr4_2:34684506-34684525 Msa0598500:three_prime_UTR 25.0%
! TTTATCCTATGTGATATTAG+CGG - chr4_2:34684973-34684992 Msa0598500:intron 25.0%
! TTATCATCTCGTAATATTAG+CGG + chr4_2:34685238-34685257 None:intergenic 25.0%
! AACATATATTAACCCGATAT+AGG - chr4_2:34685257-34685276 Msa0598500:intron 25.0%
!! AGTAACAAAACAAATTTGCT+AGG + chr4_2:34685454-34685473 None:intergenic 25.0%
!!! AGCATGATTGGTTAATTTTT+TGG - chr4_2:34685587-34685606 Msa0598500:intron 25.0%
!!! ATGATTGGTTAATTTTTTGG+TGG - chr4_2:34685590-34685609 Msa0598500:intron 25.0%
!!! TGATTGGTTAATTTTTTGGT+GGG - chr4_2:34685591-34685610 Msa0598500:intron 25.0%
! AAAGAGTCAATATACAACAA+AGG + chr4_2:34685635-34685654 None:intergenic 25.0%
! AAATGTTTGCACCATATAAA+AGG + chr4_2:34685678-34685697 None:intergenic 25.0%
!!! TCTGTTTGTTTCTATAGATT+AGG - chr4_2:34685811-34685830 Msa0598500:intron 25.0%
! ACTTTGTTGAATCATATGAT+AGG - chr4_2:34685854-34685873 Msa0598500:intron 25.0%
!!! TAATGTACCTTTTTGTTTTG+TGG - chr4_2:34685884-34685903 Msa0598500:intron 25.0%
! ATTGCATTTCATGTTAATGA+AGG - chr4_2:34686004-34686023 Msa0598500:intron 25.0%
! ATATATTGCATTTGCATCTT+TGG - chr4_2:34686660-34686679 Msa0598500:intron 25.0%
!! AAACGTGAAATAAAGCATTA+TGG - chr4_2:34686733-34686752 Msa0598500:intron 25.0%
!! TGATTTTCCATGATAGTAAA+AGG - chr4_2:34686773-34686792 Msa0598500:intron 25.0%
!!! AATACATCAAAAGCACTAAA+GGG + chr4_2:34687158-34687177 None:intergenic 25.0%
!!! AAATACATCAAAAGCACTAA+AGG + chr4_2:34687159-34687178 None:intergenic 25.0%
! AATATCCAATCAATGGTAAA+TGG + chr4_2:34687526-34687545 None:intergenic 25.0%
!!! TGTTTTAGTGGTAGAAATTT+AGG + chr4_2:34687869-34687888 None:intergenic 25.0%
!!! GTGAACTATTTTTACGTTAT+GGG + chr4_2:34687996-34688015 None:intergenic 25.0%
!!! TGTGAACTATTTTTACGTTA+TGG + chr4_2:34687997-34688016 None:intergenic 25.0%
! TAACGTAAAAATAGTTCACA+TGG - chr4_2:34687997-34688016 Msa0598500:intron 25.0%
! AACGTAAAAATAGTTCACAT+GGG - chr4_2:34687998-34688017 Msa0598500:intron 25.0%
! TTTCTTACAAAGAGAAAAAG+TGG + chr4_2:34688066-34688085 None:intergenic 25.0%
!! TTATTATGGTGTGTTATTGT+TGG - chr4_2:34688168-34688187 Msa0598500:intron 25.0%
! ATTTAAAGACATTCAAAGGT+TGG + chr4_2:34688315-34688334 None:intergenic 25.0%
CTTCTGATTAAAATCGTGTT+TGG - chr4_2:34684284-34684303 Msa0598500:three_prime_UTR 30.0%
ATGATGAGAATGTGTGAATT+AGG - chr4_2:34684538-34684557 Msa0598500:three_prime_UTR 30.0%
TAGACAATAGCATATGTTCA+AGG - chr4_2:34684683-34684702 Msa0598500:CDS 30.0%
TCTAGTCACAAAATTAAACG+AGG - chr4_2:34684893-34684912 Msa0598500:intron 30.0%
TCACAAAATTAAACGAGGAT+AGG - chr4_2:34684898-34684917 Msa0598500:intron 30.0%
CACAAAATTAAACGAGGATA+GGG - chr4_2:34684899-34684918 Msa0598500:intron 30.0%
AAAAACCGCTAATATCACAT+AGG + chr4_2:34684981-34685000 None:intergenic 30.0%
! TATGTGATATTAGCGGTTTT+TGG - chr4_2:34684980-34684999 Msa0598500:intron 30.0%
!!! GATTGGTTAATTTTTTGGTG+GGG - chr4_2:34685592-34685611 Msa0598500:intron 30.0%
! TGTTCCTTTCTCCTTTTATA+TGG - chr4_2:34685664-34685683 Msa0598500:intron 30.0%
TATAGAAACAAACAGACTAG+TGG + chr4_2:34685807-34685826 None:intergenic 30.0%
! TTTTTCCCTGGATATTTACA+CGG + chr4_2:34685983-34686002 None:intergenic 30.0%
!!! TGAAATGCAATTTTTTTCCC+TGG + chr4_2:34685995-34686014 None:intergenic 30.0%
ACTAGAAGTGATAACCAAAA+TGG + chr4_2:34686037-34686056 None:intergenic 30.0%
!!! AGATTTTGACTGGAATTAGT+TGG - chr4_2:34686708-34686727 Msa0598500:intron 30.0%
! TAAAGCATTATGGTCATTCA+CGG - chr4_2:34686743-34686762 Msa0598500:intron 30.0%
! AGTAGTTCCTTTTACTATCA+TGG + chr4_2:34686783-34686802 None:intergenic 30.0%
ATAAGAACACTCTTCAGATT+AGG - chr4_2:34686831-34686850 Msa0598500:intron 30.0%
CTATTTAAATGGTGTGAAGA+GGG + chr4_2:34687093-34687112 None:intergenic 30.0%
TCTATTTAAATGGTGTGAAG+AGG + chr4_2:34687094-34687113 None:intergenic 30.0%
GAAGTTGGGAATATAATATG+TGG + chr4_2:34687135-34687154 None:intergenic 30.0%
!! ATACATCAAAAGCACTAAAG+GGG + chr4_2:34687157-34687176 None:intergenic 30.0%
TTAGTCCATTTACCATTGAT+TGG - chr4_2:34687518-34687537 Msa0598500:intron 30.0%
TAAAACACAACCTTTGCAAT+TGG - chr4_2:34687882-34687901 Msa0598500:intron 30.0%
! TTCTTTTGTACCAATTGCAA+AGG + chr4_2:34687895-34687914 None:intergenic 30.0%
ATTAATAACCCACTATAGGA+AGG + chr4_2:34687931-34687950 None:intergenic 30.0%
GGTTATTAATAACCCACTAT+AGG + chr4_2:34687935-34687954 None:intergenic 30.0%
AAGAGAAACAAGAAAAGAGA+AGG + chr4_2:34688129-34688148 None:intergenic 30.0%
!! AGTATTCTTTAAAGTCCAAC+TGG + chr4_2:34688286-34688305 None:intergenic 30.0%
ATCATACTCTCGACTTACAT+TGG - chr4_2:34684155-34684174 Msa0598500:three_prime_UTR 35.0%
TAAGAGAGAGATGTTGTTAC+CGG + chr4_2:34684230-34684249 None:intergenic 35.0%
ATGAGAATGTGTGAATTAGG+TGG - chr4_2:34684541-34684560 Msa0598500:exon 35.0%
TTTACCTTCGGTAAATGACA+GGG + chr4_2:34684846-34684865 None:intergenic 35.0%
! TTTTACCTTCGGTAAATGAC+AGG + chr4_2:34684847-34684866 None:intergenic 35.0%
AGCGAGAGATAAACCAAAAT+TGG - chr4_2:34685103-34685122 Msa0598500:intron 35.0%
GAGAGATAAACCAAAATTGG+CGG - chr4_2:34685106-34685125 Msa0598500:intron 35.0%
TATTAACCCGATATAGGAGT+CGG - chr4_2:34685263-34685282 Msa0598500:intron 35.0%
TTTGTGGCCAATGAATTCTT+TGG - chr4_2:34685378-34685397 Msa0598500:intron 35.0%
TAGTGTGCCAAAGAATTCAT+TGG + chr4_2:34685388-34685407 None:intergenic 35.0%
TGCACCATATAAAAGGAGAA+AGG + chr4_2:34685671-34685690 None:intergenic 35.0%
AAGTGATAACCAAAATGGTG+TGG + chr4_2:34686032-34686051 None:intergenic 35.0%
AGTTGAATTTGAAGATGCAG+AGG - chr4_2:34686054-34686073 Msa0598500:intron 35.0%
GTTGAATTTGAAGATGCAGA+GGG - chr4_2:34686055-34686074 Msa0598500:intron 35.0%
AACAATTTGATAGAGGCAGA+TGG - chr4_2:34686188-34686207 Msa0598500:intron 35.0%
TCAGATGCAATTACAGCTAA+CGG - chr4_2:34686302-34686321 Msa0598500:intron 35.0%
!! AAACTGTTGCAGATTTTGAC+TGG - chr4_2:34686698-34686717 Msa0598500:intron 35.0%
TATAAATGTCGGCGTTATGT+CGG + chr4_2:34686892-34686911 None:intergenic 35.0%
TTGAAGTCCTTTCATAGAGT+GGG + chr4_2:34687262-34687281 None:intergenic 35.0%
ACTTCAAGCTTAAGAACACT+TGG - chr4_2:34687275-34687294 Msa0598500:intron 35.0%
TGTGAGCAATATCCAATCAA+TGG + chr4_2:34687533-34687552 None:intergenic 35.0%
GCTACAAATGAATCATCTGT+GGG - chr4_2:34687707-34687726 Msa0598500:CDS 35.0%
CTACAAATGAATCATCTGTG+GGG - chr4_2:34687708-34687727 Msa0598500:CDS 35.0%
! CATTATTGGTGGACCTTTAA+GGG - chr4_2:34687743-34687762 Msa0598500:CDS 35.0%
! ATTATTGGTGGACCTTTAAG+GGG - chr4_2:34687744-34687763 Msa0598500:CDS 35.0%
AACAACATCTCTAGCTGATA+GGG + chr4_2:34687808-34687827 None:intergenic 35.0%
AGATGTTGTTCCTAGCAATT+GGG - chr4_2:34687818-34687837 Msa0598500:CDS 35.0%
!! TTGCAAAGGTTGTGTTTTAG+TGG + chr4_2:34687881-34687900 None:intergenic 35.0%
AAACTAAGGGAAAGAGAGTT+GGG + chr4_2:34688026-34688045 None:intergenic 35.0%
!! AATTGCACAAGGGCATTAAA+TGG - chr4_2:34688102-34688121 Msa0598500:intron 35.0%
! TTATGGTGTGTTATTGTTGG+TGG - chr4_2:34688171-34688190 Msa0598500:intron 35.0%
TCAGATAGGAGCTAAATTGG+AGG + chr4_2:34684063-34684082 None:intergenic 40.0%
! TCCAATTTAGCTCCTATCTG+AGG - chr4_2:34684062-34684081 Msa0598500:three_prime_UTR 40.0%
!! TATCTGAGGCTTTTCTGCTT+CGG - chr4_2:34684076-34684095 Msa0598500:three_prime_UTR 40.0%
!! GACCAGTGCTGTTTATGAAA+GGG - chr4_2:34684626-34684645 Msa0598500:CDS 40.0%
!! ACCAGTGCTGTTTATGAAAG+GGG - chr4_2:34684627-34684646 Msa0598500:CDS 40.0%
TTTATGAAAGGGGAAGGATG+TGG - chr4_2:34684637-34684656 Msa0598500:CDS 40.0%
TTTGGACATATGGCTATCTC+CGG - chr4_2:34684787-34684806 Msa0598500:intron 40.0%
! AAATCCCTGTCATTTACCGA+AGG - chr4_2:34684839-34684858 Msa0598500:intron 40.0%
TCAAACTCCGACTCCTATAT+CGG + chr4_2:34685273-34685292 None:intergenic 40.0%
ACCTGACATTGATATGCTGA+AGG - chr4_2:34685560-34685579 Msa0598500:intron 40.0%
TCCTTCAGCATATCAATGTC+AGG + chr4_2:34685564-34685583 None:intergenic 40.0%
! CGTAGCTCAGTATCCTTTTA+AGG - chr4_2:34685760-34685779 Msa0598500:intron 40.0%
AGAACTCCGTGTAAATATCC+AGG - chr4_2:34685974-34685993 Msa0598500:intron 40.0%
GAACTCCGTGTAAATATCCA+GGG - chr4_2:34685975-34685994 Msa0598500:intron 40.0%
! ATGAAGGTTCCACACCATTT+TGG - chr4_2:34686020-34686039 Msa0598500:intron 40.0%
TCTGAGAGATCAGAAGTTCA+GGG + chr4_2:34686279-34686298 None:intergenic 40.0%
TGTCTCACTCTTAGGCAATT+GGG - chr4_2:34687062-34687081 Msa0598500:intron 40.0%
! AAAGCACTAAAGGGGAAGTT+GGG + chr4_2:34687149-34687168 None:intergenic 40.0%
!! AAAAGCACTAAAGGGGAAGT+TGG + chr4_2:34687150-34687169 None:intergenic 40.0%
TGAAGTCCTTTCATAGAGTG+GGG + chr4_2:34687261-34687280 None:intergenic 40.0%
CTTGAAGTCCTTTCATAGAG+TGG + chr4_2:34687263-34687282 None:intergenic 40.0%
GGCTACAAATGAATCATCTG+TGG - chr4_2:34687706-34687725 Msa0598500:CDS 40.0%
GGTGCAAATTGGTGCATTAT+TGG - chr4_2:34687729-34687748 Msa0598500:CDS 40.0%
GCAAATTGGTGCATTATTGG+TGG - chr4_2:34687732-34687751 Msa0598500:CDS 40.0%
! GCATTATTGGTGGACCTTTA+AGG - chr4_2:34687742-34687761 Msa0598500:CDS 40.0%
GAGCTGAGTTTAACAGAGAA+TGG + chr4_2:34687771-34687790 None:intergenic 40.0%
GAACAACATCTCTAGCTGAT+AGG + chr4_2:34687809-34687828 None:intergenic 40.0%
GAGATGTTGTTCCTAGCAAT+TGG - chr4_2:34687817-34687836 Msa0598500:CDS 40.0%
! ATTTAGGCGAGAAGTGTAAG+TGG + chr4_2:34687853-34687872 None:intergenic 40.0%
GGTACAAAAGAAACCAACCA+AGG - chr4_2:34687903-34687922 Msa0598500:intron 40.0%
CAAACTAAGGGAAAGAGAGT+TGG + chr4_2:34688027-34688046 None:intergenic 40.0%
TCAAGCCATTGAATTGCACA+AGG - chr4_2:34688091-34688110 Msa0598500:intron 40.0%
CAAGCCATTGAATTGCACAA+GGG - chr4_2:34688092-34688111 Msa0598500:intron 40.0%
AATGCCCTTGTGCAATTCAA+TGG + chr4_2:34688099-34688118 None:intergenic 40.0%
TTCAGCTCTGCAAGGAATTA+AGG + chr4_2:34688250-34688269 None:intergenic 40.0%
GAGGATACATAACTTGAGGT+AGG + chr4_2:34688369-34688388 None:intergenic 40.0%
GCCTCAGATAGGAGCTAAAT+TGG + chr4_2:34684066-34684085 None:intergenic 45.0%
GAAGCAGAAAAGCCTCAGAT+AGG + chr4_2:34684077-34684096 None:intergenic 45.0%
CTCGACTTACATTGGTATCC+CGG - chr4_2:34684163-34684182 Msa0598500:three_prime_UTR 45.0%
TGTGAATTAGGTGGAGCTTG+TGG - chr4_2:34684550-34684569 Msa0598500:exon 45.0%
GTGAATTAGGTGGAGCTTGT+GGG - chr4_2:34684551-34684570 Msa0598500:exon 45.0%
AGCTTGTGGGTATGGAACAT+TGG - chr4_2:34684564-34684583 Msa0598500:CDS 45.0%
TTGTGGGTATGGAACATTGG+TGG - chr4_2:34684567-34684586 Msa0598500:CDS 45.0%
!! GGACCAGTGCTGTTTATGAA+AGG - chr4_2:34684625-34684644 Msa0598500:CDS 45.0%
TCCCCTTTCATAAACAGCAC+TGG + chr4_2:34684631-34684650 None:intergenic 45.0%
!! GTGCTGTTTATGAAAGGGGA+AGG - chr4_2:34684631-34684650 Msa0598500:CDS 45.0%
! CAAAATGGGTGGTGTCAGTT+GGG + chr4_2:34684750-34684769 None:intergenic 45.0%
! TCAAAATGGGTGGTGTCAGT+TGG + chr4_2:34684751-34684770 None:intergenic 45.0%
TCTTAGTTGACCCTTCTCAC+CGG + chr4_2:34684809-34684828 None:intergenic 45.0%
AAGGGTCAACTAAGAAACCG+CGG - chr4_2:34684814-34684833 Msa0598500:intron 45.0%
AAATGACAGGGATTTGACCG+CGG + chr4_2:34684834-34684853 None:intergenic 45.0%
! ACGTTTGTCACCGCCAATTT+TGG + chr4_2:34685119-34685138 None:intergenic 45.0%
CAAACTCCGACTCCTATATC+GGG + chr4_2:34685272-34685291 None:intergenic 45.0%
! GCTGAAGGAAGAAGCATGAT+TGG - chr4_2:34685575-34685594 Msa0598500:intron 45.0%
CGGAGTTCTGCATTTCACAT+AGG + chr4_2:34685963-34685982 None:intergenic 45.0%
GAAGATGCAGAGGGAGATAT+TGG - chr4_2:34686064-34686083 Msa0598500:intron 45.0%
! CTCTGAGAGATCAGAAGTTC+AGG + chr4_2:34686280-34686299 None:intergenic 45.0%
! ACAGAGGCACGTGATTTAAG+AGG + chr4_2:34687045-34687064 None:intergenic 45.0%
ATTGCCTAAGAGTGAGACAG+AGG + chr4_2:34687061-34687080 None:intergenic 45.0%
CTGTCTCACTCTTAGGCAAT+TGG - chr4_2:34687061-34687080 Msa0598500:intron 45.0%
TGCACTCAATGCATGTGATG+TGG - chr4_2:34687197-34687216 Msa0598500:intron 45.0%
GCACTCAATGCATGTGATGT+GGG - chr4_2:34687198-34687217 Msa0598500:intron 45.0%
TTTCTCCCCCACTCTATGAA+AGG - chr4_2:34687252-34687271 Msa0598500:intron 45.0%
GAAGTCCTTTCATAGAGTGG+GGG + chr4_2:34687260-34687279 None:intergenic 45.0%
!! TGCAGAATGGTTCTAGTGAG+TGG - chr4_2:34687685-34687704 Msa0598500:CDS 45.0%
ATCATCTGTGGGGTGCAAAT+TGG - chr4_2:34687718-34687737 Msa0598500:CDS 45.0%
ACAGAGAATGGTCCCCTTAA+AGG + chr4_2:34687759-34687778 None:intergenic 45.0%
GTTAAACTCAGCTCTACCAC+CGG - chr4_2:34687777-34687796 Msa0598500:CDS 45.0%
TCTAGCTGATAGGGTTCTAC+CGG + chr4_2:34687799-34687818 None:intergenic 45.0%
TCCTAGCAATTGGGTTCCAA+AGG - chr4_2:34687827-34687846 Msa0598500:CDS 45.0%
!!! TCTCTCTCCAGTTTTGGAGA+GGG + chr4_2:34688211-34688230 None:intergenic 45.0%
!! ATTAAAATAAAAATATTACA+TGG + chr4_2:34686418-34686437 None:intergenic 5.0%
ATGCTGAAGTTGTCCAACCG+CGG + chr4_2:34684137-34684156 None:intergenic 50.0%
ACGGACACAGACACAGACAA+AGG + chr4_2:34684370-34684389 None:intergenic 50.0%
TTAGGTGGAGCTTGTGGGTA+TGG - chr4_2:34684556-34684575 Msa0598500:exon 50.0%
ATAATCACTGACGAGTGCCC+AGG - chr4_2:34684721-34684740 Msa0598500:CDS 50.0%
!! ACCACCCATTTTGACCTCAG+CGG - chr4_2:34684757-34684776 Msa0598500:intron 50.0%
AGCACCGCTGAGGTCAAAAT+GGG + chr4_2:34684764-34684783 None:intergenic 50.0%
!!! CGGTGCTGCTTTTGGACATA+TGG - chr4_2:34684777-34684796 Msa0598500:intron 50.0%
TATGGCTATCTCCGGTGAGA+AGG - chr4_2:34684795-34684814 Msa0598500:intron 50.0%
ATGGCTATCTCCGGTGAGAA+GGG - chr4_2:34684796-34684815 Msa0598500:intron 50.0%
CGAGGATAGGGTAGTTCATC+TGG - chr4_2:34684911-34684930 Msa0598500:intron 50.0%
GAGGACACGTCCCCAAAATT+TGG + chr4_2:34687026-34687045 None:intergenic 50.0%
!! GCCTTTGGAACCCAATTGCT+AGG + chr4_2:34687831-34687850 None:intergenic 50.0%
! CGAGAAGTGTAAGTGGCCTT+TGG + chr4_2:34687846-34687865 None:intergenic 50.0%
CTATAGGAAGGAGCCTTGGT+TGG + chr4_2:34687919-34687938 None:intergenic 50.0%
ACCAAGGCTCCTTCCTATAG+TGG - chr4_2:34687919-34687938 Msa0598500:intron 50.0%
CCAAGGCTCCTTCCTATAGT+GGG - chr4_2:34687920-34687939 Msa0598500:intron 50.0%
CATGTAGCCCTCTCCAAAAC+TGG - chr4_2:34688201-34688220 Msa0598500:intron 50.0%
!!! CTCTCTCTCCAGTTTTGGAG+AGG + chr4_2:34688212-34688231 None:intergenic 50.0%
! ACACGCTCTCTCTCCAGTTT+TGG + chr4_2:34688217-34688236 None:intergenic 50.0%
! AAACTGGAGAGAGAGCGTGT+AGG - chr4_2:34688217-34688236 Msa0598500:intron 50.0%
! AACTGGAGAGAGAGCGTGTA+GGG - chr4_2:34688218-34688237 Msa0598500:intron 50.0%
TACACACGTTCAGCTCTGCA+AGG + chr4_2:34688258-34688277 None:intergenic 50.0%
AACGTGTGTAGTGAGCCAGT+TGG - chr4_2:34688268-34688287 Msa0598500:CDS 50.0%
TATGGTGACCCCGAAGGAGA+CGG - chr4_2:34684199-34684218 Msa0598500:three_prime_UTR 55.0%
! TGGTGGACGTGAAGCCATTG+AGG - chr4_2:34684584-34684603 Msa0598500:CDS 55.0%
GGTGGACGTGAAGCCATTGA+GGG - chr4_2:34684585-34684604 Msa0598500:CDS 55.0%
ACCGCTGAGGTCAAAATGGG+TGG + chr4_2:34684761-34684780 None:intergenic 55.0%
CAGCACCGCTGAGGTCAAAA+TGG + chr4_2:34684765-34684784 None:intergenic 55.0%
TGTCGGCGTTATGTCGGTGT+CGG + chr4_2:34686886-34686905 None:intergenic 55.0%
GTGAAGCGCGAATACAGACG+TGG + chr4_2:34686984-34687003 None:intergenic 55.0%
CGTGCCTCTGTCTCACTCTT+AGG - chr4_2:34687054-34687073 Msa0598500:intron 55.0%
AGCTGATAGGGTTCTACCGG+TGG + chr4_2:34687796-34687815 None:intergenic 55.0%
CCCACTATAGGAAGGAGCCT+TGG + chr4_2:34687923-34687942 None:intergenic 55.0%
! CGGAAGCATGGCGAGCTTCA+CGG + chr4_2:34684107-34684126 None:intergenic 60.0%
CGTGAAGCTCGCCATGCTTC+CGG - chr4_2:34684105-34684124 Msa0598500:three_prime_UTR 60.0%
CTGAAGTTGTCCAACCGCGG+TGG + chr4_2:34684134-34684153 None:intergenic 60.0%
! ACCATACCAGGTGGCGGTAC+CGG + chr4_2:34684185-34684204 None:intergenic 60.0%
TTCGGGGTCACCATACCAGG+TGG + chr4_2:34684194-34684213 None:intergenic 60.0%
ACCTGGTATGGTGACCCCGA+AGG - chr4_2:34684193-34684212 Msa0598500:three_prime_UTR 60.0%
TCCTTCGGGGTCACCATACC+AGG + chr4_2:34684197-34684216 None:intergenic 60.0%
ACCGGTACTGCCGTCTCCTT+CGG + chr4_2:34684212-34684231 None:intergenic 60.0%
ACGTGAAGCCATTGAGGGCG+AGG - chr4_2:34684590-34684609 Msa0598500:CDS 60.0%
CGTGAAGCCATTGAGGGCGA+GGG - chr4_2:34684591-34684610 Msa0598500:CDS 60.0%
AAGCCATTGAGGGCGAGGGT+AGG - chr4_2:34684595-34684614 Msa0598500:CDS 60.0%
AGCCATTGAGGGCGAGGGTA+GGG - chr4_2:34684596-34684615 Msa0598500:CDS 60.0%
! TGGTGTCAGTTGGGCAGCCT+GGG + chr4_2:34684741-34684760 None:intergenic 60.0%
!!! GACCTCAGCGGTGCTGCTTT+TGG - chr4_2:34684769-34684788 Msa0598500:intron 60.0%
GTCCAAAAGCAGCACCGCTG+AGG + chr4_2:34684774-34684793 None:intergenic 60.0%
! CCATACCAGGTGGCGGTACC+GGG + chr4_2:34684184-34684203 None:intergenic 65.0%
GGGGTCACCATACCAGGTGG+CGG + chr4_2:34684191-34684210 None:intergenic 65.0%
CGGTACTGCCGTCTCCTTCG+GGG + chr4_2:34684210-34684229 None:intergenic 65.0%
CCGGTACTGCCGTCTCCTTC+GGG + chr4_2:34684211-34684230 None:intergenic 65.0%
CCCGAAGGAGACGGCAGTAC+CGG - chr4_2:34684208-34684227 Msa0598500:three_prime_UTR 65.0%
GCCATTGAGGGCGAGGGTAG+GGG - chr4_2:34684597-34684616 Msa0598500:CDS 65.0%
! GTGGTGTCAGTTGGGCAGCC+TGG + chr4_2:34684742-34684761 None:intergenic 65.0%
CATGCTTCCGGCTGCCACCG+CGG - chr4_2:34684117-34684136 Msa0598500:three_prime_UTR 70.0%
TGTCCAACCGCGGTGGCAGC+CGG + chr4_2:34684127-34684146 None:intergenic 70.0%
GGTATCCCGGTACCGCCACC+TGG - chr4_2:34684176-34684195 Msa0598500:three_prime_UTR 70.0%
CCCGGTACCGCCACCTGGTA+TGG - chr4_2:34684181-34684200 Msa0598500:three_prime_UTR 70.0%
GCCCCTACCCTCGCCCTCAA+TGG + chr4_2:34684601-34684620 None:intergenic 70.0%
AGGGCGAGGGTAGGGGCAGT+GGG - chr4_2:34684604-34684623 Msa0598500:CDS 70.0%
CGCGGTGGCAGCCGGAAGCA+TGG + chr4_2:34684119-34684138 None:intergenic 75.0%
CTTCCGGCTGCCACCGCGGT+TGG - chr4_2:34684121-34684140 Msa0598500:three_prime_UTR 75.0%
GAGGGCGAGGGTAGGGGCAG+TGG - chr4_2:34684603-34684622 Msa0598500:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 34684055 34688388 34684055 ID=Msa0598500;Name=Msa0598500
chr4_2 mRNA 34684055 34688388 34684055 ID=Msa0598500-mRNA-1;Parent=Msa0598500;Name=Msa0598500-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|0.75|1|1|1|4|504|251
chr4_2 exon 34684055 34684753 34684055 ID=Msa0598500-mRNA-1:exon:8094;Parent=Msa0598500-mRNA-1
chr4_2 exon 34686338 34686467 34686338 ID=Msa0598500-mRNA-1:exon:8093;Parent=Msa0598500-mRNA-1
chr4_2 exon 34687583 34687883 34687583 ID=Msa0598500-mRNA-1:exon:8092;Parent=Msa0598500-mRNA-1
chr4_2 exon 34688259 34688388 34688259 ID=Msa0598500-mRNA-1:exon:8091;Parent=Msa0598500-mRNA-1
chr4_2 CDS 34688259 34688388 34688259 ID=Msa0598500-mRNA-1:cds;Parent=Msa0598500-mRNA-1
chr4_2 CDS 34687583 34687883 34687583 ID=Msa0598500-mRNA-1:cds;Parent=Msa0598500-mRNA-1
chr4_2 CDS 34686338 34686467 34686338 ID=Msa0598500-mRNA-1:cds;Parent=Msa0598500-mRNA-1
chr4_2 CDS 34684559 34684753 34684559 ID=Msa0598500-mRNA-1:cds;Parent=Msa0598500-mRNA-1
chr4_2 three_prime_UTR 34684055 34684558 34684055 ID=Msa0598500-mRNA-1:three_prime_utr;Parent=Msa0598500-mRNA-1
Gene Sequence

>Msa0598500

ATGCACCTCCAATTTAGCTCCTATCTGAGGCTTTTCTGCTTCGGCTTAGCCGTGAAGCTCGCCATGCTTCCGGCTGCCACCGCGGTTGGACAACTTCAGCATCATACTCTCGACTTACATTGGTATCCCGGTGGAGCTTGTGGGTATGGAACATTGGTGGACGTGAAGCCATTGAGGGCGAGGGTAGGGGCAGTGGGACCAGTGCTGTTTATGAAAGGGGAAGGATGTGGTGCTTGCTATAAAGTGAAGTGTTTAGACAATAGCATATGTTCAAGGAGAGCAGTTACTGTGATAATCACTGACGAGTGCCCAGGCTGCCCAACTGACACCACCCATTTTGACCTCAGCGGTGCTGCTTTTGGACATATGGCTATCTCCGGTGAGAAGGGTCAACTAAGAAACCGCGGTCAAATCCCTGTCATTTACCGAAGAACTCCGTGTAAATATCCAGGGAAAAAAATTGCATTTCATGTTAATGAAGGTTCCACACCATTTTGGTTATCACTTCTAGTTGAATTTGAAGATGCAGAGGGAGATATTGGCACTATGCATATACGAGAAAATGGTTCTAGTGAGTGGCTACAAATGAATCATCTGTGGGGTGCAAATTGGTGCATTATTGGTGGACCTTTAAGGGGACCATTCTCTGTTAAACTCAGCTCTACCACCGGTAGAACCCTATCAGCTAGAGATGTTGTTCCTAGCAATTGGGTTCCAAAGGCCACTTACACTTCTCGCCTAAATTTCTACCACTAA
Protein sequence

>Msa0598500

MHLQFSSYLRLFCFGLAVKLAMLPAATAVGQLQHHTLDLHWYPGGACGYGTLVDVKPLRARVGAVGPVLFMKGEGCGACYKVKCLDNSICSRRAVTVIITDECPGCPTDTTHFDLSGAAFGHMAISGEKGQLRNRGQIPVIYRRTPCKYPGKKIAFHVNEGSTPFWLSLLVEFEDAEGDIGTMHIRENGSSEWLQMNHLWGANWCIIGGPLRGPFSVKLSSTTGRTLSARDVVPSNWVPKATYTSRLNFYH*