AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1339170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339170 MtrunA17_Chr4g0035581 99.284 838 6 0 1 838 1 838 0.0 1718
Msa1339170 MtrunA17_Chr8g0381871 34.242 660 375 11 119 741 16 653 8.75e-116 371
Msa1339170 MtrunA17_Chr7g0269941 39.726 584 313 13 228 800 144 699 5.53e-114 363
Msa1339170 MtrunA17_Chr2g0296441 34.076 628 358 12 153 741 34 644 1.70e-110 356
Msa1339170 MtrunA17_Chr4g0052131 33.739 658 357 13 141 746 17 647 1.45e-109 353
Msa1339170 MtrunA17_Chr4g0065401 35.085 647 363 14 170 788 68 685 5.49e-106 343
Msa1339170 MtrunA17_Chr4g0068511 34.370 611 347 10 152 737 238 819 2.83e-103 340
Msa1339170 MtrunA17_Chr7g0263661 32.868 645 353 18 178 755 87 718 8.33e-91 304
Msa1339170 MtrunA17_Chr2g0279361 31.188 606 364 15 168 746 41 620 5.13e-75 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339170 AT2G16440.1 73.055 861 193 8 1 837 1 846 0.0 1240
Msa1339170 AT5G44635.1 34.483 696 390 15 94 755 2 665 3.40e-118 378
Msa1339170 AT5G44635.2 34.483 696 390 15 94 755 2 665 8.58e-118 378
Msa1339170 AT4G02060.2 37.713 586 324 12 227 800 141 697 1.28e-108 349
Msa1339170 AT4G02060.1 37.713 586 324 12 227 800 141 697 1.28e-108 349
Msa1339170 AT1G44900.2 34.049 652 355 16 121 737 210 821 4.80e-107 351
Msa1339170 AT1G44900.1 34.049 652 355 16 121 737 212 823 7.03e-107 350
Msa1339170 AT5G46280.3 31.776 642 373 9 149 746 19 639 1.78e-105 340
Msa1339170 AT2G07690.1 34.337 664 371 14 170 801 64 694 3.23e-105 341
Msa1339170 AT5G46280.1 31.776 642 373 9 149 746 19 639 1.47e-104 340
Msa1339170 AT2G07690.2 34.337 664 369 15 170 801 64 692 1.72e-103 336
Msa1339170 AT5G46280.2 32.045 621 357 9 149 725 19 618 1.76e-102 330
Msa1339170 AT5G46280.4 32.689 569 319 8 149 673 19 567 8.37e-95 308
Msa1339170 AT3G09660.2 32.640 625 352 19 216 784 131 742 4.82e-91 304
Msa1339170 AT3G09660.3 32.797 622 352 19 216 784 131 739 5.50e-91 305
Msa1339170 AT3G09660.1 32.640 625 352 19 216 784 131 742 1.68e-90 303
Msa1339170 AT2G14050.1 32.252 524 305 14 240 746 131 621 2.66e-69 242
Msa1339170 AT2G14050.2 32.252 524 305 14 240 746 131 621 4.22e-69 241

Find 253 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACTGTTTCTCCTGTTTC+AGG 0.145122 tig0003042:+25626 None:intergenic
AATATAGCTTCCCTGATTTC+TGG 0.179319 tig0003042:+27551 None:intergenic
GTAGACAAAGACAGCCTTTC+AGG 0.195400 tig0003042:+23365 None:intergenic
TTCTCCTGTTTCAGGATCTT+TGG 0.208241 tig0003042:+25634 None:intergenic
CGCTGGTCCGACTTACGTTT+GGG 0.221711 tig0003042:-28111 Msa1339170:CDS
TCATCAAATAAAACTTCTTC+TGG 0.231583 tig0003042:+26120 None:intergenic
GGGACGTTCCATGCGGTTAT+TGG 0.232963 tig0003042:-23914 Msa1339170:CDS
TAGAGATTTGATAGCTAAAA+TGG 0.257265 tig0003042:+23501 None:intergenic
TTGTGGGTGTATGTGCTTTC+GGG 0.277631 tig0003042:+24566 None:intergenic
ATCATGGAGAAGATGCAAAT+TGG 0.278435 tig0003042:-23937 Msa1339170:CDS
CCGAATAATCATTCCCTTCA+TGG 0.292850 tig0003042:+27589 None:intergenic
GGTGGAGGCATTTCGGCTTC+TGG 0.293566 tig0003042:-24169 Msa1339170:CDS
GTCAGCCTTTCATAGATATC+TGG 0.298464 tig0003042:+25983 None:intergenic
TATTGTTTCCCTGCACTATA+AGG 0.304910 tig0003042:-24748 Msa1339170:CDS
ATGAGGAATTTGAATCCTTC+TGG 0.314341 tig0003042:-27735 Msa1339170:intron
GACGGCGGCGACGGCGGCCG+GGG 0.319854 tig0003042:+28327 None:intergenic
AGTCACTGGCGCCAAACATC+TGG 0.319935 tig0003042:-25958 Msa1339170:CDS
TGATGATTTGGATATGGATT+TGG 0.321742 tig0003042:-28000 Msa1339170:CDS
TTGACGGCGGCGACGGCGGC+CGG 0.323649 tig0003042:+28325 None:intergenic
AACAAGTGTCATCGAATTCT+TGG 0.324058 tig0003042:+27342 None:intergenic
TTCCCTGATTTCTGGTATAA+TGG 0.327037 tig0003042:+27559 None:intergenic
TTACCTCTCTCCACCGGAAC+CGG 0.337220 tig0003042:+27497 None:intergenic
GATCAAACAGGTTATTGAAT+TGG 0.344653 tig0003042:-27952 Msa1339170:CDS
AAGGATGAGGCGAGAAAGTT+TGG 0.347925 tig0003042:-23980 Msa1339170:CDS
TGACGGCGGCGACGGCGGCC+GGG 0.349028 tig0003042:+28326 None:intergenic
TGGTGATGATGATTTGGATA+TGG 0.355491 tig0003042:-28006 Msa1339170:CDS
ACGCTGGTCCGACTTACGTT+TGG 0.358693 tig0003042:-28112 Msa1339170:CDS
TAAACAAATTGTGAGGCTTC+AGG 0.364258 tig0003042:-26592 Msa1339170:CDS
GCTCCATTATACCAGAAATC+AGG 0.366675 tig0003042:-27562 Msa1339170:CDS
GGAGATGTAACTGCGAAATA+TGG 0.366761 tig0003042:+28606 None:intergenic
ATTCTCCTTGTTGGTGATCC+TGG 0.367312 tig0003042:-25761 Msa1339170:CDS
CTTCTTCTGGATTTCTGCCC+TGG 0.368125 tig0003042:+26133 None:intergenic
GTCGTAACCGTCGCCGCCTT+CGG 0.370559 tig0003042:+28142 None:intergenic
TCTGTTCGGTTGAGGTGTTC+CGG 0.372748 tig0003042:+28289 None:intergenic
ATTCTGCTCTGACCCGGTTC+CGG 0.375919 tig0003042:-27510 Msa1339170:CDS
GTGTGAGGCGTTCCTCCTTC+AGG 0.376780 tig0003042:+26552 None:intergenic
TCATGGAGAAGATGCAAATT+GGG 0.382324 tig0003042:-23936 Msa1339170:CDS
TCAAGGTGGTGATGATGATT+TGG 0.385708 tig0003042:-28012 Msa1339170:CDS
ATGATGTGGTGGAGGCATTT+CGG 0.391101 tig0003042:-24176 Msa1339170:CDS
GAGGTGGAAGTTGGTGTGGC+AGG 0.396719 tig0003042:+28185 None:intergenic
TGTGGCAGGGACACGGCGGC+TGG 0.398291 tig0003042:+28199 None:intergenic
GTTTGGATAACTACCAGTTC+TGG 0.398922 tig0003042:+24116 None:intergenic
CATGACAAACTGGTGGATAC+TGG 0.399287 tig0003042:-26513 Msa1339170:CDS
AATTTACTTAATGCTTGATA+AGG 0.399930 tig0003042:-24805 Msa1339170:CDS
GTTGTGGGTGTATGTGCTTT+CGG 0.401989 tig0003042:+24565 None:intergenic
CTTGCTATTGCATGACAAAC+TGG 0.407456 tig0003042:-26523 Msa1339170:CDS
GCTGCTGATGAATTGATTAC+AGG 0.407975 tig0003042:-24531 Msa1339170:CDS
TCTCATAACTACTGGTGTTT+CGG 0.408833 tig0003042:-24010 Msa1339170:CDS
ATCAGGTGACTGGTATATAC+AGG 0.409169 tig0003042:-26389 Msa1339170:intron
GTTGGCAATTGGACTTGAAT+TGG 0.411791 tig0003042:+28361 None:intergenic
ATTCTCCGGAAGTAGCAAAA+AGG 0.412222 tig0003042:-24481 Msa1339170:intron
ACGGCGGCGACGGCGGCCGG+GGG 0.414613 tig0003042:+28328 None:intergenic
GTGCAGGGAAACAATATGTT+TGG 0.417678 tig0003042:+24755 None:intergenic
TATACAGGGCTATGAGTGTC+AGG 0.419389 tig0003042:-26374 Msa1339170:CDS
CCATGAAGGGAATGATTATT+CGG 0.419432 tig0003042:-27589 Msa1339170:CDS
GAGGAGTAGGTGTTGGCAAT+TGG 0.421375 tig0003042:+28350 None:intergenic
AATGCTTTGAAGTTGGCATC+TGG 0.429342 tig0003042:-25809 Msa1339170:CDS
TCCCGTCACCGCCGTGGTGG+CGG 0.429729 tig0003042:-28230 Msa1339170:CDS
TCATCTAGCTCCCAGATGTT+TGG 0.433147 tig0003042:+25947 None:intergenic
AGTGAGGAGAAGAGTGAGGA+TGG 0.434893 tig0003042:+28585 None:intergenic
TGCCGCCACCACGGCGGTGA+CGG 0.435855 tig0003042:+28228 None:intergenic
CGATGAGGCAGGGTCATCAT+TGG 0.438267 tig0003042:-23577 Msa1339170:three_prime_UTR
GAAGGATTTGTTTCCATGGC+TGG 0.441340 tig0003042:-23624 Msa1339170:CDS
TAGCATCCTCAACCAGCATC+CGG 0.442650 tig0003042:+26172 None:intergenic
CACCGAAGTCCTTGCATTGA+GGG 0.444534 tig0003042:+25217 None:intergenic
CCTCATAATCCTTATAGTGC+AGG 0.451180 tig0003042:+24739 None:intergenic
CAGCTTCATCTGATAGTTGT+GGG 0.452578 tig0003042:+24550 None:intergenic
AATCTCAGTCCAGAAAGTTC+TGG 0.452690 tig0003042:-28654 Msa1339170:five_prime_UTR
CATATAATATGTATCATCAC+TGG 0.458512 tig0003042:+23472 None:intergenic
GACATCAAAGTCCCGGATGC+TGG 0.459233 tig0003042:-26184 Msa1339170:CDS
TACCTCGGTCGCTCAAAACT+AGG 0.463388 tig0003042:+25510 None:intergenic
GCAGGGACACGGCGGCTGGA+AGG 0.466484 tig0003042:+28203 None:intergenic
AAATCAGGGAAGCTATATTC+AGG 0.467213 tig0003042:-27547 Msa1339170:CDS
CAGGGACACGGCGGCTGGAA+GGG 0.467568 tig0003042:+28204 None:intergenic
GCATCTGGCGCTAGCTTTCG+TGG 0.468482 tig0003042:-25794 Msa1339170:CDS
GGAATCCATTGGAGTGGAAT+CGG 0.468602 tig0003042:+28504 None:intergenic
GAAGTGATACGAACCATTGT+TGG 0.469083 tig0003042:+28483 None:intergenic
TTAAGATGAATTTCGCTGCC+AGG 0.469150 tig0003042:+23777 None:intergenic
CAGCGAAGGATTTGTTTCCA+TGG 0.470604 tig0003042:-23628 Msa1339170:CDS
TGATTGATTGACGGCGGCGA+CGG 0.471280 tig0003042:+28318 None:intergenic
GCCGCCACCACGGCGGTGAC+GGG 0.471860 tig0003042:+28229 None:intergenic
TTGAAAAGCATGTTCAAACT+AGG 0.472903 tig0003042:-27785 Msa1339170:CDS
GATATAAATATTCTCCTTGT+TGG 0.474086 tig0003042:-25770 Msa1339170:CDS
TCGGATTCGCTTCTCAGAAT+CGG 0.474303 tig0003042:-24288 Msa1339170:intron
CCTCCTTCAGGTATCTCGTC+AGG 0.476130 tig0003042:+26564 None:intergenic
GTGGCCAAAGATCCTGAAAC+AGG 0.477237 tig0003042:-25638 Msa1339170:CDS
GGATTATATCGTGAACCGCT+AGG 0.481496 tig0003042:+25179 None:intergenic
CCTGCACTATAAGGATTATG+AGG 0.483526 tig0003042:-24739 Msa1339170:intron
TTCGGTTGAGGTGTTCCGGA+TGG 0.484095 tig0003042:+28293 None:intergenic
CAATGCAAGGACTTCGGTGT+TGG 0.484227 tig0003042:-25213 Msa1339170:CDS
TGAACCTACTGTTTGCTTGA+GGG 0.484828 tig0003042:-27377 Msa1339170:CDS
AAAGAAAGGTCTTCTTTGCC+AGG 0.485292 tig0003042:-25921 Msa1339170:intron
TTGGAATTGTCCGGTGAAGA+AGG 0.487245 tig0003042:+28380 None:intergenic
GGCATTTACACCAGTGGAAG+GGG 0.488022 tig0003042:-25689 Msa1339170:CDS
GATTATATCGTGAACCGCTA+GGG 0.498770 tig0003042:+25180 None:intergenic
GTATGAGAAATTGATCAAAC+AGG 0.500686 tig0003042:-27964 Msa1339170:CDS
GATATGGATTTGGATATTGA+AGG 0.501917 tig0003042:-27990 Msa1339170:CDS
GATTTGTGAAAACGCGGGAA+TGG 0.502495 tig0003042:+28535 None:intergenic
GACATGGATCTCATAACTAC+TGG 0.502893 tig0003042:-24018 Msa1339170:CDS
AAGTTGGTGTGGCAGGGACA+CGG 0.505458 tig0003042:+28192 None:intergenic
GGACTTGAATTGGAATTGTC+CGG 0.506755 tig0003042:+28371 None:intergenic
GATTTGATAGCTAAAATGGT+TGG 0.507334 tig0003042:+23505 None:intergenic
GAACCATTGTTGGAATCCAT+TGG 0.507852 tig0003042:+28493 None:intergenic
GAAGCGAAGCGAGATCTGTT+CGG 0.512176 tig0003042:+28275 None:intergenic
AATAGACTCTCAATCTGCCT+TGG 0.512928 tig0003042:+24332 None:intergenic
GACTTAACAGTTCTCTGAGT+TGG 0.513256 tig0003042:+26345 None:intergenic
GGCTTCCGATTCCACTCCAA+TGG 0.513615 tig0003042:-28509 Msa1339170:CDS
GCCACCACGGCGGTGACGGG+AGG 0.514779 tig0003042:+28232 None:intergenic
TGAGAGGATGGTATCCATGA+AGG 0.515734 tig0003042:-27603 Msa1339170:CDS
CGGCGGTGACGGGAGGGAGT+TGG 0.516071 tig0003042:+28239 None:intergenic
AGACACTCGCAACATGATCA+TGG 0.516681 tig0003042:-23953 Msa1339170:CDS
GTTGTCAATGACAGACAAGC+GGG 0.516945 tig0003042:+25157 None:intergenic
AGGTGGAAGTTGGTGTGGCA+GGG 0.517814 tig0003042:+28186 None:intergenic
ACGTTCCATGCGGTTATTGG+AGG 0.517993 tig0003042:-23911 Msa1339170:intron
GGGAGTTGGAGTGGCATCAG+AGG 0.518215 tig0003042:+28253 None:intergenic
CTGGTGGATACTGGAAAGCC+AGG 0.518819 tig0003042:-26504 Msa1339170:CDS
TTCCCTCAATGCAAGGACTT+CGG 0.519427 tig0003042:-25219 Msa1339170:CDS
AAGCGAGATCTGTTCGGTTG+AGG 0.519567 tig0003042:+28281 None:intergenic
AATTAATTAACAGGTAATAA+CGG 0.521998 tig0003042:-24360 Msa1339170:intron
TGAGAAATGAGAAGTGAGTG+AGG 0.522868 tig0003042:+28569 None:intergenic
AGAACATGATACGATGAGGC+AGG 0.523495 tig0003042:-23588 Msa1339170:exon
CTGGTCCGACTTACGTTTGG+GGG 0.523857 tig0003042:-28109 Msa1339170:CDS
TAAGATGGTGAGGTATCCTC+TGG 0.524702 tig0003042:-27868 Msa1339170:CDS
ATGTAACTGCGAAATATGGC+GGG 0.525257 tig0003042:+28610 None:intergenic
CATGGAAACAAATCCTTCGC+TGG 0.526272 tig0003042:+23629 None:intergenic
TATGGAGGTTGACAATGGCC+AGG 0.526806 tig0003042:-26151 Msa1339170:CDS
ATTACGACTTAGTGAAGCAT+TGG 0.527011 tig0003042:-24312 Msa1339170:CDS
TTTGTTGTATATCAGGTGAC+TGG 0.529577 tig0003042:-26399 Msa1339170:intron
CATAGGAAAGTCCTCGGAGG+TGG 0.530567 tig0003042:+28169 None:intergenic
AGCTGCGACTTGCTTGTACC+AGG 0.531962 tig0003042:+25743 None:intergenic
CGGATGGAGTGATTGATTGA+CGG 0.532588 tig0003042:+28309 None:intergenic
TTTCGGCAAGCGAAAGGATG+AGG 0.535401 tig0003042:-23993 Msa1339170:CDS
CGTCAATCAATCACTCCATC+CGG 0.536330 tig0003042:-28308 Msa1339170:CDS
GAACATGGAGCAGGATGTGT+TGG 0.537785 tig0003042:-24622 Msa1339170:CDS
TACCTCTCTCCACCGGAACC+GGG 0.539167 tig0003042:+27498 None:intergenic
TAAGATGAATTTCGCTGCCA+GGG 0.539727 tig0003042:+23778 None:intergenic
AGCCACAGACTTACTTGCAT+CGG 0.543317 tig0003042:+27314 None:intergenic
CTGCTCTGACCCGGTTCCGG+TGG 0.545661 tig0003042:-27507 Msa1339170:CDS
GCAGCTTCATCTGATAGTTG+TGG 0.546328 tig0003042:+24549 None:intergenic
TCTGCAATGGATACCAGAAC+TGG 0.546883 tig0003042:-24129 Msa1339170:intron
TCACGAATTGTATAGTAAGA+TGG 0.547022 tig0003042:-27883 Msa1339170:CDS
CTCCATTATACCAGAAATCA+GGG 0.547487 tig0003042:-27561 Msa1339170:CDS
CTGAACCTACTGTTTGCTTG+AGG 0.548909 tig0003042:-27378 Msa1339170:CDS
CTCACCTCAACTCTGTCACC+TGG 0.549979 tig0003042:+26486 None:intergenic
ATATTCAGGTGTCTAGTATG+TGG 0.553917 tig0003042:-27533 Msa1339170:CDS
AGGGGTAGGGGAAAATTCTC+CGG 0.554199 tig0003042:-24495 Msa1339170:CDS
TGGAGTGGAATCGGAAGCCA+TGG 0.554448 tig0003042:+28513 None:intergenic
CTCATAATCCTTATAGTGCA+GGG 0.554579 tig0003042:+24740 None:intergenic
AGCATCCTCAACCAGCATCC+GGG 0.555444 tig0003042:+26173 None:intergenic
AAACAGGTTATTGAATTGGA+AGG 0.555576 tig0003042:-27948 Msa1339170:CDS
GTCACTGGCGCCAAACATCT+GGG 0.560062 tig0003042:-25957 Msa1339170:CDS
GAGCTAGATGATGTAAAGAA+AGG 0.560591 tig0003042:-25935 Msa1339170:CDS
GTGACGGGAGGGAGTTGGAG+TGG 0.564090 tig0003042:+28244 None:intergenic
GATGCTGGTTGAGGATGCTA+TGG 0.564286 tig0003042:-26169 Msa1339170:CDS
GACTTTCCTATGTCTTCCGA+AGG 0.564548 tig0003042:-28158 Msa1339170:CDS
AATCTTCAGGTTCTTGAGAG+TGG 0.565854 tig0003042:-25536 Msa1339170:intron
ATGTGGATTCTGCTCTGACC+CGG 0.565866 tig0003042:-27516 Msa1339170:CDS
ACACCGAAGTCCTTGCATTG+AGG 0.566072 tig0003042:+25216 None:intergenic
ATGTCTTCCGAAGGCGGCGA+CGG 0.566788 tig0003042:-28149 Msa1339170:CDS
ATGTTTGGCAAGTCGTCGGT+CGG 0.570550 tig0003042:+24770 None:intergenic
AAGTCCTCGGAGGTGGAAGT+TGG 0.570681 tig0003042:+28176 None:intergenic
GCCAACACCTACTCCTCCCC+CGG 0.570982 tig0003042:-28344 Msa1339170:CDS
AGTGAGTGAGGAGAAGAGTG+AGG 0.571411 tig0003042:+28581 None:intergenic
TGGAAGGGATGCCGCCACCA+CGG 0.571805 tig0003042:+28219 None:intergenic
GACTTAGTGAAGCATTGGCT+CGG 0.572654 tig0003042:-24307 Msa1339170:CDS
CTTCACAGGAACTATTGACA+TGG 0.572711 tig0003042:-24034 Msa1339170:intron
GAGAGGATGGTATCCATGAA+GGG 0.572804 tig0003042:-27602 Msa1339170:CDS
AAAGTCCCGGATGCTGGTTG+AGG 0.573038 tig0003042:-26178 Msa1339170:CDS
TTGATTGACGGCGGCGACGG+CGG 0.576601 tig0003042:+28321 None:intergenic
ATAATTGCAGAACATGGAGC+AGG 0.578019 tig0003042:-24631 Msa1339170:intron
ACCTCGGTCGCTCAAAACTA+GGG 0.578032 tig0003042:+25511 None:intergenic
ACTCCAATGGATTCCAACAA+TGG 0.580647 tig0003042:-28496 Msa1339170:intron
CTGGTGTTTCGGCAAGCGAA+AGG 0.580745 tig0003042:-23999 Msa1339170:CDS
TGCAATGCAGCAATCTGCAA+TGG 0.581576 tig0003042:-24142 Msa1339170:CDS
ACAAACTGTTTCAATAGCAA+AGG 0.582486 tig0003042:-25255 Msa1339170:CDS
ACAAAATGTCTGACAATGCA+AGG 0.583185 tig0003042:-25466 Msa1339170:CDS
CAATATGTTTGGCAAGTCGT+CGG 0.583594 tig0003042:+24766 None:intergenic
ATATGGATTTGGATATTGAA+GGG 0.585173 tig0003042:-27989 Msa1339170:CDS
CTCGGAGGTGGAAGTTGGTG+TGG 0.585837 tig0003042:+28181 None:intergenic
AGGTAATAACGGCAACTCCA+AGG 0.585966 tig0003042:-24349 Msa1339170:CDS
GTTGCTACTCTCGCCAGCGA+AGG 0.586679 tig0003042:-23642 Msa1339170:CDS
TGAAAGGCTGACAAAGTCAC+TGG 0.588015 tig0003042:-25972 Msa1339170:CDS
CCCTCCCGTCACCGCCGTGG+TGG 0.589100 tig0003042:-28233 Msa1339170:CDS
CTCAGTCCAGAAAGTTCTGG+CGG 0.589685 tig0003042:-28651 Msa1339170:five_prime_UTR
ATGTGAATGATGCGATTCAG+AGG 0.592525 tig0003042:-28067 Msa1339170:CDS
GACCCGGTTCCGGTGGAGAG+AGG 0.592602 tig0003042:-27500 Msa1339170:intron
TGGCATTTACACCAGTGGAA+GGG 0.592837 tig0003042:-25690 Msa1339170:CDS
ACTGTTTCAATAGCAAAGGC+AGG 0.593633 tig0003042:-25251 Msa1339170:CDS
GCTGGTCCGACTTACGTTTG+GGG 0.594202 tig0003042:-28110 Msa1339170:CDS
ATTGTTGGAATCCATTGGAG+TGG 0.594571 tig0003042:+28498 None:intergenic
AACAACCAGATATCTATGAA+AGG 0.595448 tig0003042:-25988 Msa1339170:CDS
TCGCCGCCTTCGGAAGACAT+AGG 0.595608 tig0003042:+28152 None:intergenic
GGTTGGATTGACTGCTTACG+TGG 0.597160 tig0003042:-25657 Msa1339170:CDS
CCACGTGGCATTTACACCAG+TGG 0.599464 tig0003042:-25695 Msa1339170:CDS
CATGGAGAAGATGCAAATTG+GGG 0.599489 tig0003042:-23935 Msa1339170:CDS
TTATTGCTTCCCTCAATGCA+AGG 0.600052 tig0003042:-25226 Msa1339170:CDS
AGGCGGCGACGGTTACGACA+TGG 0.600969 tig0003042:-28138 Msa1339170:CDS
GTCTCAGGTGGCTAAACTGA+AGG 0.601377 tig0003042:-26020 Msa1339170:intron
TGGACAAAAGAGTGGGAGGA+AGG 0.601830 tig0003042:+25129 None:intergenic
GAACTAAAGAATCAGAGCCC+TGG 0.602624 tig0003042:-23795 Msa1339170:CDS
GCTGGTTGAGGATGCTATGG+AGG 0.604167 tig0003042:-26166 Msa1339170:CDS
GATGTAACTGCGAAATATGG+CGG 0.606682 tig0003042:+28609 None:intergenic
TCAGTCCAGAAAGTTCTGGC+GGG 0.607335 tig0003042:-28650 Msa1339170:five_prime_UTR
AGCAATATGAGAAGCTACAA+TGG 0.607617 tig0003042:+23343 None:intergenic
GTGGCATTTACACCAGTGGA+AGG 0.610034 tig0003042:-25691 Msa1339170:CDS
TTACTGATAAACAAATTGTG+AGG 0.611797 tig0003042:-26599 Msa1339170:CDS
ATGGAGGTTGACAATGGCCA+GGG 0.614550 tig0003042:-26150 Msa1339170:CDS
ACTCCCTCCCGTCACCGCCG+TGG 0.615649 tig0003042:-28236 Msa1339170:CDS
CCACCACGGCGGTGACGGGA+GGG 0.621741 tig0003042:+28233 None:intergenic
GGGGACTAACATTAGTGTGG+AGG 0.622648 tig0003042:-28090 Msa1339170:CDS
TTTCCTATGTCTTCCGAAGG+CGG 0.623869 tig0003042:-28155 Msa1339170:CDS
GGAAGACATAGGAAAGTCCT+CGG 0.623985 tig0003042:+28163 None:intergenic
CATCAATGCAGCAGATACCT+CGG 0.625698 tig0003042:+25495 None:intergenic
AACTAACCTGGACAAAAGAG+TGG 0.626323 tig0003042:+25121 None:intergenic
GTGTAATTACCTCTCTCCAC+CGG 0.632724 tig0003042:+27491 None:intergenic
ATATAATATGTATCATCACT+GGG 0.634352 tig0003042:+23473 None:intergenic
GCCATGGATTTGTGAAAACG+CGG 0.640208 tig0003042:+28529 None:intergenic
AAAGCCAGGTGACAGAGTTG+AGG 0.641668 tig0003042:-26490 Msa1339170:intron
TCTTCCCTCAAGCAAACAGT+AGG 0.642149 tig0003042:+27373 None:intergenic
CCATGGATTTGTGAAAACGC+GGG 0.647721 tig0003042:+28530 None:intergenic
GAACATGATACGATGAGGCA+GGG 0.647776 tig0003042:-23587 Msa1339170:exon
TCAGGTGACTGGTATATACA+GGG 0.649445 tig0003042:-26388 Msa1339170:intron
AACCTGGACAAAAGAGTGGG+AGG 0.651252 tig0003042:+25125 None:intergenic
TAATACCTCCAATAACCGCA+TGG 0.653841 tig0003042:+23906 None:intergenic
AAAATGGCAAGCACCTCCAG+AGG 0.658144 tig0003042:+27852 None:intergenic
TTGGCTTGCGCAAACCCTAG+CGG 0.658205 tig0003042:-25194 Msa1339170:CDS
GATGGTGAGGTATCCTCTGG+AGG 0.660588 tig0003042:-27865 Msa1339170:CDS
ACTAACCTGGACAAAAGAGT+GGG 0.661844 tig0003042:+25122 None:intergenic
ACACCTGACGAGATACCTGA+AGG 0.663788 tig0003042:-26567 Msa1339170:CDS
TTAAGAGCTCAACTTCAATG+AGG 0.667900 tig0003042:-27752 Msa1339170:CDS
AATAGCAAGCTAACAGTGTG+AGG 0.667908 tig0003042:+26537 None:intergenic
GCTATTGCATGACAAACTGG+TGG 0.668028 tig0003042:-26520 Msa1339170:CDS
TGTTGTCAATGACAGACAAG+CGG 0.675119 tig0003042:+25156 None:intergenic
AATTGTATAGTAAGATGGTG+AGG 0.675670 tig0003042:-27878 Msa1339170:CDS
CACACCAACTTCCACCTCCG+AGG 0.676430 tig0003042:-28180 Msa1339170:CDS
ATACAGGGCTATGAGTGTCA+GGG 0.676940 tig0003042:-26373 Msa1339170:CDS
TGTAACTGCGAAATATGGCG+GGG 0.677055 tig0003042:+28611 None:intergenic
TTGTACCAGGATCACCAACA+AGG 0.678899 tig0003042:+25756 None:intergenic
GCATTTACACCAGTGGAAGG+GGG 0.685959 tig0003042:-25688 Msa1339170:CDS
AGGGCTATGAGTGTCAGGGT+AGG 0.695713 tig0003042:-26369 Msa1339170:CDS
ATGGAGTGATTGATTGACGG+CGG 0.697982 tig0003042:+28312 None:intergenic
GGTTACGACATGGATGACGC+TGG 0.706192 tig0003042:-28128 Msa1339170:CDS
GATGCTATGGAGGTTGACAA+TGG 0.706325 tig0003042:-26156 Msa1339170:CDS
TTGTCAATGACAGACAAGCG+GGG 0.713062 tig0003042:+25158 None:intergenic
CCTGACGAGATACCTGAAGG+AGG 0.715290 tig0003042:-26564 Msa1339170:CDS
ATGGAGAAGATGCAAATTGG+GGG 0.717552 tig0003042:-23934 Msa1339170:CDS
TGCAAGGAGCATGTTACACG+AGG 0.719897 tig0003042:-25450 Msa1339170:intron
AAGGGATGCCGCCACCACGG+CGG 0.726179 tig0003042:+28222 None:intergenic
CCACTGGTGTAAATGCCACG+TGG 0.732070 tig0003042:+25695 None:intergenic
TTGGTGTGGCAGGGACACGG+CGG 0.750786 tig0003042:+28195 None:intergenic
AAAATACTGATAAACTAACG+GGG 0.751048 tig0003042:+23425 None:intergenic
AGACATAGGAAAGTCCTCGG+AGG 0.767289 tig0003042:+28166 None:intergenic
ATACACAAACTTTCTCCACG+TGG 0.768452 tig0003042:-25710 Msa1339170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCTCTTTAAAAATAAA+TGG - tig0003042:26926-26945 Msa1339170:intron 10.0%
!!! TATACTTTTTTTTTTTTTGA+AGG + tig0003042:28618-28637 None:intergenic 10.0%
!!! TCCAATAATTTTTTTTTGTT+TGG - tig0003042:24871-24890 Msa1339170:intron 15.0%
!! AATTAATTAACAGGTAATAA+CGG - tig0003042:27463-27482 Msa1339170:intron 15.0%
!! TTAGTCATATATAGTTTATT+TGG + tig0003042:27759-27778 None:intergenic 15.0%
!!! GTGATCATTTTAAATTATAT+TGG + tig0003042:27995-28014 None:intergenic 15.0%
!! TAAAAATACTGATAAACTAA+CGG + tig0003042:28403-28422 None:intergenic 15.0%
!!! TTAGTTTATCAGTATTTTTA+TGG - tig0003042:28403-28422 Msa1339170:intron 15.0%
!!! TAGTTTATCAGTATTTTTAT+GGG - tig0003042:28404-28423 Msa1339170:intron 15.0%
!! GCCAAACAAAAAAAAATTAT+TGG + tig0003042:24875-24894 None:intergenic 20.0%
!! AATAATCAATTTGATCTAGA+AGG - tig0003042:24968-24987 Msa1339170:intron 20.0%
!! AATAATCATTTGAATTGTAC+TGG - tig0003042:25043-25062 Msa1339170:intron 20.0%
!! ATAATCATTTGAATTGTACT+GGG - tig0003042:25044-25063 Msa1339170:intron 20.0%
!!! AGTTTTATTTGATGAAGAAA+AGG - tig0003042:25711-25730 Msa1339170:CDS 20.0%
!!! TTTTTTCTAAAAACTTTGCA+TGG - tig0003042:26444-26463 Msa1339170:intron 20.0%
!! AATTTACTTAATGCTTGATA+AGG - tig0003042:27018-27037 Msa1339170:intron 20.0%
!! CTGTTAATTAATTGATAGAT+AGG + tig0003042:27456-27475 None:intergenic 20.0%
!! CTATCTATCAATTAATTAAC+AGG - tig0003042:27454-27473 Msa1339170:intron 20.0%
!!! CTATTTTTTTTCTACAAATC+AGG + tig0003042:27585-27604 None:intergenic 20.0%
!!! ACTAAATGTTTTAGAAAGAA+TGG + tig0003042:27943-27962 None:intergenic 20.0%
!! AAAAATAATCTCAAAGGTAA+GGG + tig0003042:28081-28100 None:intergenic 20.0%
!! TAAAAATAATCTCAAAGGTA+AGG + tig0003042:28082-28101 None:intergenic 20.0%
!! ATATAATATGTATCATCACT+GGG + tig0003042:28353-28372 None:intergenic 20.0%
!! AAAAATACTGATAAACTAAC+GGG + tig0003042:28402-28421 None:intergenic 20.0%
!!! ATTTAGTTTTTTTTCCTGAA+AGG - tig0003042:28444-28463 Msa1339170:intron 20.0%
!! GATATCAAATTTGAAAAATG+TGG - tig0003042:28556-28575 Msa1339170:five_prime_UTR 20.0%
! TAGAAATCTGAATAAGAAGA+TGG + tig0003042:23375-23394 None:intergenic 25.0%
!!! ATTTTGAAACCCTATTTTTC+AGG - tig0003042:23419-23438 Msa1339170:three_prime_UTR 25.0%
! ATATGGATTTGGATATTGAA+GGG - tig0003042:23834-23853 Msa1339170:intron 25.0%
! CATCAAAACCATATCAAAAA+TGG + tig0003042:23990-24009 None:intergenic 25.0%
! TTATATGTGATGATAGTTTG+TGG - tig0003042:24180-24199 Msa1339170:CDS 25.0%
!!! TTTGTTTTGAAGATATTGAG+AGG - tig0003042:24204-24223 Msa1339170:intron 25.0%
!!! TAGTTCTATATTTTGACTGT+TGG - tig0003042:24544-24563 Msa1339170:CDS 25.0%
! TGAATGATATTTGATGTTGA+AGG - tig0003042:24585-24604 Msa1339170:CDS 25.0%
! GAATGATATTTGATGTTGAA+GGG - tig0003042:24586-24605 Msa1339170:CDS 25.0%
!!! AAGCTTCTTTTAGCTTTTTT+CGG - tig0003042:24624-24643 Msa1339170:CDS 25.0%
! TATATTTGACAATTCCAGTA+TGG - tig0003042:24905-24924 Msa1339170:intron 25.0%
!! GTAAAAAATTACCCGATTTT+AGG + tig0003042:24948-24967 None:intergenic 25.0%
! ATATGTTAATTGCAGTTTCA+AGG + tig0003042:25187-25206 None:intergenic 25.0%
! AACATATCTTCTCTAATTTC+AGG - tig0003042:25200-25219 Msa1339170:CDS 25.0%
! TTACTGATAAACAAATTGTG+AGG - tig0003042:25224-25243 Msa1339170:CDS 25.0%
! ATATACAACAAAACACTCAT+GGG + tig0003042:25416-25435 None:intergenic 25.0%
! TTAAGTCATTGTTCAAAGTA+TGG - tig0003042:25494-25513 Msa1339170:CDS 25.0%
! TAAGTCATTGTTCAAAGTAT+GGG - tig0003042:25495-25514 Msa1339170:CDS 25.0%
! TCATCAAATAAAACTTCTTC+TGG + tig0003042:25706-25725 None:intergenic 25.0%
!!! TTTATTTTCTTGCAGCTTTT+TGG - tig0003042:25987-26006 Msa1339170:CDS 25.0%
!! TTATTTTCTTGCAGCTTTTT+GGG - tig0003042:25988-26007 Msa1339170:CDS 25.0%
! GATATAAATATTCTCCTTGT+TGG - tig0003042:26053-26072 Msa1339170:intron 25.0%
! TTTAGAAAAAACAAGCAGAT+AGG + tig0003042:26435-26454 None:intergenic 25.0%
! ATGAAAACCCTAAAAAATAG+AGG + tig0003042:26827-26846 None:intergenic 25.0%
!!! CTATTTTTTAGGGTTTTCAT+TGG - tig0003042:26827-26846 Msa1339170:intron 25.0%
! TTACAGGCTATGTAAAAATA+AGG - tig0003042:27308-27327 Msa1339170:intron 25.0%
! TACAGGCTATGTAAAAATAA+GGG - tig0003042:27309-27328 Msa1339170:intron 25.0%
! GTCATATATAGTTTATTTGG+AGG + tig0003042:27756-27775 None:intergenic 25.0%
! ACTGGTAAAAATAATCTCAA+AGG + tig0003042:28087-28106 None:intergenic 25.0%
!! TAGAGATTTGATAGCTAAAA+TGG + tig0003042:28325-28344 None:intergenic 25.0%
! CATATAATATGTATCATCAC+TGG + tig0003042:28354-28373 None:intergenic 25.0%
! AAAATACTGATAAACTAACG+GGG + tig0003042:28401-28420 None:intergenic 25.0%
!!! TTTATCAGTATTTTTATGGG+TGG - tig0003042:28407-28426 Msa1339170:intron 25.0%
!!! TTACTCTTTTTTACTGTTGT+TGG + tig0003042:28514-28533 None:intergenic 25.0%
! TGATGATTTGGATATGGATT+TGG - tig0003042:23823-23842 Msa1339170:intron 30.0%
GATATGGATTTGGATATTGA+AGG - tig0003042:23833-23852 Msa1339170:intron 30.0%
GTATGAGAAATTGATCAAAC+AGG - tig0003042:23859-23878 Msa1339170:intron 30.0%
GATCAAACAGGTTATTGAAT+TGG - tig0003042:23871-23890 Msa1339170:intron 30.0%
AAACAGGTTATTGAATTGGA+AGG - tig0003042:23875-23894 Msa1339170:intron 30.0%
TCACGAATTGTATAGTAAGA+TGG - tig0003042:23940-23959 Msa1339170:CDS 30.0%
AATTGTATAGTAAGATGGTG+AGG - tig0003042:23945-23964 Msa1339170:CDS 30.0%
!!! TGATATGGTTTTGATGAACA+TGG - tig0003042:23994-24013 Msa1339170:CDS 30.0%
! TTTTGATGAACATGGTTACT+AGG - tig0003042:24002-24021 Msa1339170:CDS 30.0%
! GAACATGCTTTTCAAACATA+GGG + tig0003042:24033-24052 None:intergenic 30.0%
! TGAACATGCTTTTCAAACAT+AGG + tig0003042:24034-24053 None:intergenic 30.0%
! TTGAAAAGCATGTTCAAACT+AGG - tig0003042:24038-24057 Msa1339170:intron 30.0%
!! TTTTGAAGATATTGAGAGGA+TGG - tig0003042:24208-24227 Msa1339170:intron 30.0%
! ATCTGAATGTAATGTTTTGC+TGG - tig0003042:24397-24416 Msa1339170:intron 30.0%
!!! TGCTGGCTATTTTGATTTTT+AGG - tig0003042:24414-24433 Msa1339170:intron 30.0%
ACATAGCATACATAACGTAA+GGG + tig0003042:24654-24673 None:intergenic 30.0%
TACATAGCATACATAACGTA+AGG + tig0003042:24655-24674 None:intergenic 30.0%
TTTCCTGCAAAGTAAAACAT+AGG - tig0003042:24744-24763 Msa1339170:CDS 30.0%
TGGAATATAACTTTCTGAAC+TGG - tig0003042:24781-24800 Msa1339170:CDS 30.0%
AAAAACTACTATTAACCTGC+TGG - tig0003042:24829-24848 Msa1339170:intron 30.0%
ACATTATTGAATCACCATAC+TGG + tig0003042:24922-24941 None:intergenic 30.0%
CAATAATGTCTGCCTAAAAT+CGG - tig0003042:24933-24952 Msa1339170:intron 30.0%
AATAATGTCTGCCTAAAATC+GGG - tig0003042:24934-24953 Msa1339170:intron 30.0%
!! GGTAGATTTTAGTGATAAGT+TGG - tig0003042:25065-25084 Msa1339170:intron 30.0%
! TTTAGTGATAAGTTGGATGA+TGG - tig0003042:25072-25091 Msa1339170:intron 30.0%
AAAATAGAAGCTAATGACCA+TGG + tig0003042:25098-25117 None:intergenic 30.0%
!! GTTTTGATCATGTGACTATT+TGG - tig0003042:25127-25146 Msa1339170:intron 30.0%
CTATTTATCAGAGTATGTCA+TGG + tig0003042:25369-25388 None:intergenic 30.0%
GATATACAACAAAACACTCA+TGG + tig0003042:25417-25436 None:intergenic 30.0%
!! TGAGTGTTTTGTTGTATATC+AGG - tig0003042:25417-25436 Msa1339170:intron 30.0%
AAATGCAAATGAGTTTGAGA+AGG + tig0003042:25524-25543 None:intergenic 30.0%
TAAAAAAGACATCAAAGTCC+CGG - tig0003042:25632-25651 Msa1339170:CDS 30.0%
AACAACCAGATATCTATGAA+AGG - tig0003042:25835-25854 Msa1339170:intron 30.0%
GTTGTTTGACAAATATTCTG+AGG - tig0003042:25955-25974 Msa1339170:CDS 30.0%
! TATTTTCTTGCAGCTTTTTG+GGG - tig0003042:25989-26008 Msa1339170:CDS 30.0%
CATTAGACACTAAAAGATCA+TGG + tig0003042:26231-26250 None:intergenic 30.0%
CTAATGTACAAGAAATGCAA+TGG - tig0003042:26245-26264 Msa1339170:intron 30.0%
! ATGTTTTCTGCTAAATCTTC+AGG - tig0003042:26274-26293 Msa1339170:intron 30.0%
! TCAAAAGTACAAAGCTAACA+TGG + tig0003042:26505-26524 None:intergenic 30.0%
ATAAACAGAGACAAGTGTAT+TGG + tig0003042:26532-26551 None:intergenic 30.0%
ACAAACTGTTTCAATAGCAA+AGG - tig0003042:26568-26587 Msa1339170:CDS 30.0%
! TGATAACTAGTTTATGACTC+TGG - tig0003042:26740-26759 Msa1339170:intron 30.0%
! AGCAATCCATTTTAAACCTT+GGG - tig0003042:26797-26816 Msa1339170:intron 30.0%
!!! ATTTGAGTTGATCCTTTTTC+TGG - tig0003042:26983-27002 Msa1339170:intron 30.0%
TATGCAAAAACACTTAAGCT+TGG + tig0003042:27151-27170 None:intergenic 30.0%
ACAGGCTATGTAAAAATAAG+GGG - tig0003042:27310-27329 Msa1339170:intron 30.0%
CTATGTAAAAATAAGGGGTA+GGG - tig0003042:27315-27334 Msa1339170:intron 30.0%
TATGTAAAAATAAGGGGTAG+GGG - tig0003042:27316-27335 Msa1339170:intron 30.0%
!! TATTAAGTAACTTGTTGCAC+AGG - tig0003042:27615-27634 Msa1339170:intron 30.0%
AGGAATACAATAGAGTATAG+GGG + tig0003042:27736-27755 None:intergenic 30.0%
GAGGAATACAATAGAGTATA+GGG + tig0003042:27737-27756 None:intergenic 30.0%
! CTAAATCCTTTTATCTTCAC+AGG - tig0003042:27775-27794 Msa1339170:CDS 30.0%
ATAGTTCCTGTGAAGATAAA+AGG + tig0003042:27784-27803 None:intergenic 30.0%
! TTATGTTCAGTTTGAGACAA+TGG - tig0003042:27968-27987 Msa1339170:CDS 30.0%
TAAAATGATCACGCAGATAT+TGG - tig0003042:28003-28022 Msa1339170:CDS 30.0%
CATTAGTTCACTTATCCTTA+GGG + tig0003042:28127-28146 None:intergenic 30.0%
TCATTAGTTCACTTATCCTT+AGG + tig0003042:28128-28147 None:intergenic 30.0%
AAAAAGAACATGATACGATG+AGG - tig0003042:28231-28250 Msa1339170:CDS 30.0%
! GATTTGATAGCTAAAATGGT+TGG + tig0003042:28321-28340 None:intergenic 30.0%
GAAGAAGGACCTGAAAAATA+GGG + tig0003042:23431-23450 None:intergenic 35.0%
TGAAGAAGGACCTGAAAAAT+AGG + tig0003042:23432-23451 None:intergenic 35.0%
AGAGAAAAATCTGCTTCTCA+AGG - tig0003042:23794-23813 Msa1339170:CDS 35.0%
! TGGTGATGATGATTTGGATA+TGG - tig0003042:23817-23836 Msa1339170:intron 35.0%
TTAAGAGCTCAACTTCAATG+AGG - tig0003042:24071-24090 Msa1339170:intron 35.0%
ATGAGGAATTTGAATCCTTC+TGG - tig0003042:24088-24107 Msa1339170:intron 35.0%
GAAAACAAAAACTCACCAGA+AGG + tig0003042:24106-24125 None:intergenic 35.0%
CCATGAAGGGAATGATTATT+CGG - tig0003042:24234-24253 Msa1339170:intron 35.0%
CTCCATTATACCAGAAATCA+GGG - tig0003042:24262-24281 Msa1339170:intron 35.0%
!! TTCCCTGATTTCTGGTATAA+TGG + tig0003042:24267-24286 None:intergenic 35.0%
AATATAGCTTCCCTGATTTC+TGG + tig0003042:24275-24294 None:intergenic 35.0%
AAATCAGGGAAGCTATATTC+AGG - tig0003042:24276-24295 Msa1339170:intron 35.0%
ATATTCAGGTGTCTAGTATG+TGG - tig0003042:24290-24309 Msa1339170:CDS 35.0%
GTAATTACACGAGTCATTTC+TGG - tig0003042:24345-24364 Msa1339170:CDS 35.0%
AACAAGTGTCATCGAATTCT+TGG + tig0003042:24484-24503 None:intergenic 35.0%
AAGTAAGTCTGTGGCTTATT+TGG - tig0003042:24516-24535 Msa1339170:CDS 35.0%
AGCAAAAATCAGAAGGAACA+GGG + tig0003042:24694-24713 None:intergenic 35.0%
AAGCAAAAATCAGAAGGAAC+AGG + tig0003042:24695-24714 None:intergenic 35.0%
! TTGCCTATGTTTTACTTTGC+AGG + tig0003042:24750-24769 None:intergenic 35.0%
GTAAAACATAGGCAAATAGC+TGG - tig0003042:24755-24774 Msa1339170:CDS 35.0%
TCAATTTGATCTAGAAGGTG+AGG - tig0003042:24973-24992 Msa1339170:intron 35.0%
TCTTAACCTCTTGACAAATG+AGG + tig0003042:25006-25025 None:intergenic 35.0%
TAAACAAATTGTGAGGCTTC+AGG - tig0003042:25231-25250 Msa1339170:CDS 35.0%
! TTTGTTGTATATCAGGTGAC+TGG - tig0003042:25424-25443 Msa1339170:intron 35.0%
GAGCTAGATGATGTAAAGAA+AGG - tig0003042:25888-25907 Msa1339170:intron 35.0%
! ATTTTCTTGCAGCTTTTTGG+GGG - tig0003042:25990-26009 Msa1339170:CDS 35.0%
! TATACTGTTTCTCCTGTTTC+AGG + tig0003042:26200-26219 None:intergenic 35.0%
ACACTAAAAGATCATGGACT+TGG + tig0003042:26225-26244 None:intergenic 35.0%
ACAAAATGTCTGACAATGCA+AGG - tig0003042:26357-26376 Msa1339170:CDS 35.0%
ATATGCAATTCCTCATGCAT+TGG - tig0003042:26773-26792 Msa1339170:intron 35.0%
! CAGCAATCCATTTTAAACCT+TGG - tig0003042:26796-26815 Msa1339170:intron 35.0%
AAAAAATAGAGGTAAGCCCA+AGG + tig0003042:26816-26835 None:intergenic 35.0%
!!! TGGGCTTACCTCTATTTTTT+AGG - tig0003042:26816-26835 Msa1339170:intron 35.0%
!!! GGGCTTACCTCTATTTTTTA+GGG - tig0003042:26817-26836 Msa1339170:intron 35.0%
AAATCAAACCTGCCAGAAAA+AGG + tig0003042:26998-27017 None:intergenic 35.0%
TATTGTTTCCCTGCACTATA+AGG - tig0003042:27075-27094 Msa1339170:intron 35.0%
CTCATAATCCTTATAGTGCA+GGG + tig0003042:27086-27105 None:intergenic 35.0%
ACTATAAGGATTATGAGGTC+TGG - tig0003042:27089-27108 Msa1339170:intron 35.0%
CATACTCACTTAGAATGATG+TGG - tig0003042:27167-27186 Msa1339170:intron 35.0%
GCTATGTAAAAATAAGGGGT+AGG - tig0003042:27314-27333 Msa1339170:intron 35.0%
!! TATCACCTTTTTGCTACTTC+CGG + tig0003042:27350-27369 None:intergenic 35.0%
ATTACGACTTAGTGAAGCAT+TGG - tig0003042:27511-27530 Msa1339170:CDS 35.0%
ATAGAGTATAGGGGATTGTT+TGG + tig0003042:27727-27746 None:intergenic 35.0%
GGAGGAATACAATAGAGTAT+AGG + tig0003042:27738-27757 None:intergenic 35.0%
TCTCATAACTACTGGTGTTT+CGG - tig0003042:27813-27832 Msa1339170:CDS 35.0%
ATCATGGAGAAGATGCAAAT+TGG - tig0003042:27886-27905 Msa1339170:CDS 35.0%
TCATGGAGAAGATGCAAATT+GGG - tig0003042:27887-27906 Msa1339170:CDS 35.0%
AGCAATATGAGAAGCTACAA+TGG + tig0003042:28483-28502 None:intergenic 35.0%
ATGTAACTGCGAAATATGGC+GGG + tig0003042:23216-23235 None:intergenic 40.0%
GATGTAACTGCGAAATATGG+CGG + tig0003042:23217-23236 None:intergenic 40.0%
GGAGATGTAACTGCGAAATA+TGG + tig0003042:23220-23239 None:intergenic 40.0%
TGAGAAATGAGAAGTGAGTG+AGG + tig0003042:23257-23276 None:intergenic 40.0%
ATTGTTGGAATCCATTGGAG+TGG + tig0003042:23328-23347 None:intergenic 40.0%
! ACTCCAATGGATTCCAACAA+TGG - tig0003042:23327-23346 Msa1339170:three_prime_UTR 40.0%
GAACCATTGTTGGAATCCAT+TGG + tig0003042:23333-23352 None:intergenic 40.0%
GAAGTGATACGAACCATTGT+TGG + tig0003042:23343-23362 None:intergenic 40.0%
!!! TTTTTCAGGTCCTTCTTCAC+CGG - tig0003042:23433-23452 Msa1339170:three_prime_UTR 40.0%
GGACTTGAATTGGAATTGTC+CGG + tig0003042:23455-23474 None:intergenic 40.0%
GTTGGCAATTGGACTTGAAT+TGG + tig0003042:23465-23484 None:intergenic 40.0%
ATGTGAATGATGCGATTCAG+AGG - tig0003042:23756-23775 Msa1339170:intron 40.0%
GAAAAATCTGCTTCTCAAGG+TGG - tig0003042:23797-23816 Msa1339170:CDS 40.0%
! TCAAGGTGGTGATGATGATT+TGG - tig0003042:23811-23830 Msa1339170:intron 40.0%
!!! GGTGCTTGCCATTTTTGATA+TGG - tig0003042:23979-23998 Msa1339170:CDS 40.0%
CCGAATAATCATTCCCTTCA+TGG + tig0003042:24237-24256 None:intergenic 40.0%
GCTCCATTATACCAGAAATC+AGG - tig0003042:24261-24280 Msa1339170:intron 40.0%
TGAACCTACTGTTTGCTTGA+GGG - tig0003042:24446-24465 Msa1339170:intron 40.0%
GCTCACAAGCAAAAATCAGA+AGG + tig0003042:24701-24720 None:intergenic 40.0%
TTTGCTTGTGAGCAAATCAG+TGG - tig0003042:24708-24727 Msa1339170:intron 40.0%
ACTTTGCCTCATTTGTCAAG+AGG - tig0003042:24997-25016 Msa1339170:intron 40.0%
TCATGTGACTATTTGGCGTA+AGG - tig0003042:25134-25153 Msa1339170:CDS 40.0%
! TTGGCGTAAGGTTTTTCACT+TGG - tig0003042:25146-25165 Msa1339170:CDS 40.0%
AATAGCAAGCTAACAGTGTG+AGG + tig0003042:25289-25308 None:intergenic 40.0%
!! CTTGCTATTGCATGACAAAC+TGG - tig0003042:25300-25319 Msa1339170:intron 40.0%
ATCAGGTGACTGGTATATAC+AGG - tig0003042:25434-25453 Msa1339170:intron 40.0%
TCAGGTGACTGGTATATACA+GGG - tig0003042:25435-25454 Msa1339170:intron 40.0%
GACTTAACAGTTCTCTGAGT+TGG + tig0003042:25481-25500 None:intergenic 40.0%
TCAGACAAGCATCAATTAGC+AGG + tig0003042:25783-25802 None:intergenic 40.0%
GTCAGCCTTTCATAGATATC+TGG + tig0003042:25843-25862 None:intergenic 40.0%
AAAGAAAGGTCTTCTTTGCC+AGG - tig0003042:25902-25921 Msa1339170:intron 40.0%
AGCTAGAAAGATGTGTTACC+TGG + tig0003042:25923-25942 None:intergenic 40.0%
!! AATGCTTTGAAGTTGGCATC+TGG - tig0003042:26014-26033 Msa1339170:CDS 40.0%
ATACACAAACTTTCTCCACG+TGG - tig0003042:26113-26132 Msa1339170:CDS 40.0%
TTCTCCTGTTTCAGGATCTT+TGG + tig0003042:26192-26211 None:intergenic 40.0%
! AATCTTCAGGTTCTTGAGAG+TGG - tig0003042:26287-26306 Msa1339170:intron 40.0%
CACTTGTCTCTGTTTATTCC+AGG - tig0003042:26535-26554 Msa1339170:CDS 40.0%
TCTCTGTTTATTCCAGGTGA+TGG - tig0003042:26541-26560 Msa1339170:CDS 40.0%
ACTGTTTCAATAGCAAAGGC+AGG - tig0003042:26572-26591 Msa1339170:CDS 40.0%
TTATTGCTTCCCTCAATGCA+AGG - tig0003042:26597-26616 Msa1339170:CDS 40.0%
GATTATATCGTGAACCGCTA+GGG + tig0003042:26646-26665 None:intergenic 40.0%
TGTTGTCAATGACAGACAAG+CGG + tig0003042:26670-26689 None:intergenic 40.0%
ACTAACCTGGACAAAAGAGT+GGG + tig0003042:26704-26723 None:intergenic 40.0%
AACTAACCTGGACAAAAGAG+TGG + tig0003042:26705-26724 None:intergenic 40.0%
!! CTTTTGTCCAGGTTAGTTGT+TGG - tig0003042:26707-26726 Msa1339170:intron 40.0%
CTTATGTCCAACAACTAACC+TGG + tig0003042:26717-26736 None:intergenic 40.0%
GGTAAGCCCAAGGTTTAAAA+TGG + tig0003042:26806-26825 None:intergenic 40.0%
TCTCCTTATCAAACCTAGTG+TGG - tig0003042:26881-26900 Msa1339170:intron 40.0%
CTCCTTATCAAACCTAGTGT+GGG - tig0003042:26882-26901 Msa1339170:intron 40.0%
TACCCACACTAGGTTTGATA+AGG + tig0003042:26887-26906 None:intergenic 40.0%
TTATCAAACCTAGTGTGGGT+AGG - tig0003042:26886-26905 Msa1339170:intron 40.0%
TATCAAACCTAGTGTGGGTA+GGG - tig0003042:26887-26906 Msa1339170:intron 40.0%
CAATATGTTTGGCAAGTCGT+CGG + tig0003042:27060-27079 None:intergenic 40.0%
GTGCAGGGAAACAATATGTT+TGG + tig0003042:27071-27090 None:intergenic 40.0%
CCTCATAATCCTTATAGTGC+AGG + tig0003042:27087-27106 None:intergenic 40.0%
CCTGCACTATAAGGATTATG+AGG - tig0003042:27084-27103 Msa1339170:intron 40.0%
TGCTCCATGTTCTGCAATTA+TGG + tig0003042:27193-27212 None:intergenic 40.0%
ATAATTGCAGAACATGGAGC+AGG - tig0003042:27192-27211 Msa1339170:intron 40.0%
CAGCTTCATCTGATAGTTGT+GGG + tig0003042:27276-27295 None:intergenic 40.0%
GCTGCTGATGAATTGATTAC+AGG - tig0003042:27292-27311 Msa1339170:intron 40.0%
ATTCTCCGGAAGTAGCAAAA+AGG - tig0003042:27342-27361 Msa1339170:CDS 40.0%
AATAGACTCTCAATCTGCCT+TGG + tig0003042:27494-27513 None:intergenic 40.0%
ACAGGTCGAAAAACATGATG+TGG - tig0003042:27633-27652 Msa1339170:intron 40.0%
GTTTGGATAACTACCAGTTC+TGG + tig0003042:27710-27729 None:intergenic 40.0%
CTTCACAGGAACTATTGACA+TGG - tig0003042:27789-27808 Msa1339170:CDS 40.0%
GACATGGATCTCATAACTAC+TGG - tig0003042:27805-27824 Msa1339170:CDS 40.0%
CATGGAGAAGATGCAAATTG+GGG - tig0003042:27888-27907 Msa1339170:CDS 40.0%
ATGGAGAAGATGCAAATTGG+GGG - tig0003042:27889-27908 Msa1339170:CDS 40.0%
TAATACCTCCAATAACCGCA+TGG + tig0003042:27920-27939 None:intergenic 40.0%
TAAGATGAATTTCGCTGCCA+GGG + tig0003042:28048-28067 None:intergenic 40.0%
TTAAGATGAATTTCGCTGCC+AGG + tig0003042:28049-28068 None:intergenic 40.0%
AGTTCACTTATCCTTAGGGA+TGG + tig0003042:28123-28142 None:intergenic 40.0%
!!! CAGGGTCATCATTGGTTTTA+GGG - tig0003042:28254-28273 Msa1339170:CDS 40.0%
!!! AGGGTCATCATTGGTTTTAG+GGG - tig0003042:28255-28274 Msa1339170:CDS 40.0%
TGTAACTGCGAAATATGGCG+GGG + tig0003042:23215-23234 None:intergenic 45.0%
GATTTGTGAAAACGCGGGAA+TGG + tig0003042:23291-23310 None:intergenic 45.0%
CCATGGATTTGTGAAAACGC+GGG + tig0003042:23296-23315 None:intergenic 45.0%
GCCATGGATTTGTGAAAACG+CGG + tig0003042:23297-23316 None:intergenic 45.0%
GGAATCCATTGGAGTGGAAT+CGG + tig0003042:23322-23341 None:intergenic 45.0%
TTGGAATTGTCCGGTGAAGA+AGG + tig0003042:23446-23465 None:intergenic 45.0%
ATGGAGTGATTGATTGACGG+CGG + tig0003042:23514-23533 None:intergenic 45.0%
CGGATGGAGTGATTGATTGA+CGG + tig0003042:23517-23536 None:intergenic 45.0%
CGTCAATCAATCACTCCATC+CGG - tig0003042:23515-23534 Msa1339170:three_prime_UTR 45.0%
GGAAGACATAGGAAAGTCCT+CGG + tig0003042:23663-23682 None:intergenic 45.0%
GACTTTCCTATGTCTTCCGA+AGG - tig0003042:23665-23684 Msa1339170:intron 45.0%
TTTCCTATGTCTTCCGAAGG+CGG - tig0003042:23668-23687 Msa1339170:intron 45.0%
TTAGTCCCCCAAACGTAAGT+CGG + tig0003042:23722-23741 None:intergenic 45.0%
TTGGGGGACTAACATTAGTG+TGG - tig0003042:23730-23749 Msa1339170:intron 45.0%
! TAAGATGGTGAGGTATCCTC+TGG - tig0003042:23955-23974 Msa1339170:CDS 45.0%
TGAGAGGATGGTATCCATGA+AGG - tig0003042:24220-24239 Msa1339170:intron 45.0%
GAGAGGATGGTATCCATGAA+GGG - tig0003042:24221-24240 Msa1339170:intron 45.0%
GTGTAATTACCTCTCTCCAC+CGG + tig0003042:24335-24354 None:intergenic 45.0%
CTGAACCTACTGTTTGCTTG+AGG - tig0003042:24445-24464 Msa1339170:intron 45.0%
TCTTCCCTCAAGCAAACAGT+AGG + tig0003042:24453-24472 None:intergenic 45.0%
AACCGATGCAAGTAAGTCTG+TGG - tig0003042:24507-24526 Msa1339170:CDS 45.0%
AGCCACAGACTTACTTGCAT+CGG + tig0003042:24512-24531 None:intergenic 45.0%
GACACAATTAAACTGCCAGC+AGG + tig0003042:24847-24866 None:intergenic 45.0%
! GATAAGTTGGATGATGGCCA+TGG - tig0003042:25078-25097 Msa1339170:intron 45.0%
GCTATTGCATGACAAACTGG+TGG - tig0003042:25303-25322 Msa1339170:intron 45.0%
! CATGACAAACTGGTGGATAC+TGG - tig0003042:25310-25329 Msa1339170:intron 45.0%
TATACAGGGCTATGAGTGTC+AGG - tig0003042:25449-25468 Msa1339170:intron 45.0%
ATACAGGGCTATGAGTGTCA+GGG - tig0003042:25450-25469 Msa1339170:intron 45.0%
GATGCTATGGAGGTTGACAA+TGG - tig0003042:25667-25686 Msa1339170:CDS 45.0%
TTGATGCTTGTCTGAGTCTC+AGG - tig0003042:25788-25807 Msa1339170:CDS 45.0%
TGAAAGGCTGACAAAGTCAC+TGG - tig0003042:25851-25870 Msa1339170:intron 45.0%
! TCATCTAGCTCCCAGATGTT+TGG + tig0003042:25879-25898 None:intergenic 45.0%
!! ATTCTCCTTGTTGGTGATCC+TGG - tig0003042:26062-26081 Msa1339170:intron 45.0%
TTGTACCAGGATCACCAACA+AGG + tig0003042:26070-26089 None:intergenic 45.0%
TGGCATTTACACCAGTGGAA+GGG - tig0003042:26133-26152 Msa1339170:CDS 45.0%
CATCAATGCAGCAGATACCT+CGG + tig0003042:26331-26350 None:intergenic 45.0%
!! CAGTTTGTTGTTCCATCACC+TGG + tig0003042:26556-26575 None:intergenic 45.0%
TTCCCTCAATGCAAGGACTT+CGG - tig0003042:26604-26623 Msa1339170:CDS 45.0%
GGATTATATCGTGAACCGCT+AGG + tig0003042:26647-26666 None:intergenic 45.0%
TTGTCAATGACAGACAAGCG+GGG + tig0003042:26668-26687 None:intergenic 45.0%
GTTGTCAATGACAGACAAGC+GGG + tig0003042:26669-26688 None:intergenic 45.0%
ATCAAACCTAGTGTGGGTAG+GGG - tig0003042:26888-26907 Msa1339170:intron 45.0%
!! GAGTTGATCCTTTTTCTGGC+AGG - tig0003042:26987-27006 Msa1339170:intron 45.0%
GTGGCCATAATTGCAGAACA+TGG - tig0003042:27186-27205 Msa1339170:intron 45.0%
TTGTGGGTGTATGTGCTTTC+GGG + tig0003042:27260-27279 None:intergenic 45.0%
GTTGTGGGTGTATGTGCTTT+CGG + tig0003042:27261-27280 None:intergenic 45.0%
GCAGCTTCATCTGATAGTTG+TGG + tig0003042:27277-27296 None:intergenic 45.0%
AGGTAATAACGGCAACTCCA+AGG - tig0003042:27474-27493 Msa1339170:intron 45.0%
!! GACTTAGTGAAGCATTGGCT+CGG - tig0003042:27516-27535 Msa1339170:CDS 45.0%
TCGGATTCGCTTCTCAGAAT+CGG - tig0003042:27535-27554 Msa1339170:CDS 45.0%
! ATCGGTTAGTTGAGCTTGCT+TGG - tig0003042:27553-27572 Msa1339170:CDS 45.0%
GGTCGAAAAACATGATGTGG+TGG - tig0003042:27636-27655 Msa1339170:intron 45.0%
CGAAAAACATGATGTGGTGG+AGG - tig0003042:27639-27658 Msa1339170:intron 45.0%
!! ATGATGTGGTGGAGGCATTT+CGG - tig0003042:27647-27666 Msa1339170:intron 45.0%
TGCAATGCAGCAATCTGCAA+TGG - tig0003042:27681-27700 Msa1339170:intron 45.0%
TCTGCAATGGATACCAGAAC+TGG - tig0003042:27694-27713 Msa1339170:intron 45.0%
AAGGATGAGGCGAGAAAGTT+TGG - tig0003042:27843-27862 Msa1339170:CDS 45.0%
AGACACTCGCAACATGATCA+TGG - tig0003042:27870-27889 Msa1339170:CDS 45.0%
GAACTAAAGAATCAGAGCCC+TGG - tig0003042:28028-28047 Msa1339170:CDS 45.0%
GATGGAGCAAGCATAAACAC+TGG + tig0003042:28105-28124 None:intergenic 45.0%
TTATGCTTGCTCCATCCCTA+AGG - tig0003042:28109-28128 Msa1339170:CDS 45.0%
CATGGAAACAAATCCTTCGC+TGG + tig0003042:28197-28216 None:intergenic 45.0%
! CAGCGAAGGATTTGTTTCCA+TGG - tig0003042:28195-28214 Msa1339170:CDS 45.0%
! GAAGGATTTGTTTCCATGGC+TGG - tig0003042:28199-28218 Msa1339170:CDS 45.0%
! TTTTACACTGTCACCAGCCA+TGG + tig0003042:28215-28234 None:intergenic 45.0%
AGAACATGATACGATGAGGC+AGG - tig0003042:28235-28254 Msa1339170:CDS 45.0%
GAACATGATACGATGAGGCA+GGG - tig0003042:28236-28255 Msa1339170:CDS 45.0%
!!! GCAGGGTCATCATTGGTTTT+AGG - tig0003042:28253-28272 Msa1339170:CDS 45.0%
GTAGACAAAGACAGCCTTTC+AGG + tig0003042:28461-28480 None:intergenic 45.0%
! CTCAGTCCAGAAAGTTCTGG+CGG - tig0003042:23172-23191 Msa1339170:three_prime_UTR 50.0%
! TCAGTCCAGAAAGTTCTGGC+GGG - tig0003042:23173-23192 Msa1339170:three_prime_UTR 50.0%
! GTTTTCCCGCCAGAACTTTC+TGG + tig0003042:23181-23200 None:intergenic 50.0%
AGTGAGGAGAAGAGTGAGGA+TGG + tig0003042:23241-23260 None:intergenic 50.0%
AGTGAGTGAGGAGAAGAGTG+AGG + tig0003042:23245-23264 None:intergenic 50.0%
! CCCGCGTTTTCACAAATCCA+TGG - tig0003042:23293-23312 Msa1339170:three_prime_UTR 50.0%
!! GAGGAGTAGGTGTTGGCAAT+TGG + tig0003042:23476-23495 None:intergenic 50.0%
! TCTGTTCGGTTGAGGTGTTC+CGG + tig0003042:23537-23556 None:intergenic 50.0%
AAGCGAGATCTGTTCGGTTG+AGG + tig0003042:23545-23564 None:intergenic 50.0%
GAAGCGAAGCGAGATCTGTT+CGG + tig0003042:23551-23570 None:intergenic 50.0%
AGACATAGGAAAGTCCTCGG+AGG + tig0003042:23660-23679 None:intergenic 50.0%
GGGGACTAACATTAGTGTGG+AGG - tig0003042:23733-23752 Msa1339170:intron 50.0%
AAAATGGCAAGCACCTCCAG+AGG + tig0003042:23974-23993 None:intergenic 50.0%
ATGTGGATTCTGCTCTGACC+CGG - tig0003042:24307-24326 Msa1339170:CDS 50.0%
CATAGGCAAATAGCTGGACG+TGG - tig0003042:24761-24780 Msa1339170:CDS 50.0%
ACACCTGACGAGATACCTGA+AGG - tig0003042:25256-25275 Msa1339170:CDS 50.0%
AAAGCCAGGTGACAGAGTTG+AGG - tig0003042:25333-25352 Msa1339170:intron 50.0%
TAGCATCCTCAACCAGCATC+CGG + tig0003042:25654-25673 None:intergenic 50.0%
! GATGCTGGTTGAGGATGCTA+TGG - tig0003042:25654-25673 Msa1339170:CDS 50.0%
TATGGAGGTTGACAATGGCC+AGG - tig0003042:25672-25691 Msa1339170:CDS 50.0%
ATGGAGGTTGACAATGGCCA+GGG - tig0003042:25673-25692 Msa1339170:CDS 50.0%
CTTCTTCTGGATTTCTGCCC+TGG + tig0003042:25693-25712 None:intergenic 50.0%
ATGCTTGTCTGAGTCTCAGG+TGG - tig0003042:25791-25810 Msa1339170:CDS 50.0%
GTCTCAGGTGGCTAAACTGA+AGG - tig0003042:25803-25822 Msa1339170:CDS 50.0%
!! TGGGGGCAATGCTTTGAAGT+TGG - tig0003042:26007-26026 Msa1339170:CDS 50.0%
GTGGCATTTACACCAGTGGA+AGG - tig0003042:26132-26151 Msa1339170:CDS 50.0%
GGCATTTACACCAGTGGAAG+GGG - tig0003042:26134-26153 Msa1339170:CDS 50.0%
GCATTTACACCAGTGGAAGG+GGG - tig0003042:26135-26154 Msa1339170:CDS 50.0%
GGTTGGATTGACTGCTTACG+TGG - tig0003042:26166-26185 Msa1339170:CDS 50.0%
GTGGCCAAAGATCCTGAAAC+AGG - tig0003042:26185-26204 Msa1339170:CDS 50.0%
ACCTCGGTCGCTCAAAACTA+GGG + tig0003042:26315-26334 None:intergenic 50.0%
TACCTCGGTCGCTCAAAACT+AGG + tig0003042:26316-26335 None:intergenic 50.0%
! TGCAAGGAGCATGTTACACG+AGG - tig0003042:26373-26392 Msa1339170:CDS 50.0%
! AGGAGCATGTTACACGAGGT+TGG - tig0003042:26377-26396 Msa1339170:CDS 50.0%
CACCGAAGTCCTTGCATTGA+GGG + tig0003042:26609-26628 None:intergenic 50.0%
ACACCGAAGTCCTTGCATTG+AGG + tig0003042:26610-26629 None:intergenic 50.0%
! CAATGCAAGGACTTCGGTGT+TGG - tig0003042:26610-26629 Msa1339170:intron 50.0%
TGGACAAAAGAGTGGGAGGA+AGG + tig0003042:26697-26716 None:intergenic 50.0%
! TTCCTCCCACTCTTTTGTCC+AGG - tig0003042:26696-26715 Msa1339170:intron 50.0%
AACCTGGACAAAAGAGTGGG+AGG + tig0003042:26701-26720 None:intergenic 50.0%
TGGATTGCTGCCAATGCATG+AGG + tig0003042:26786-26805 None:intergenic 50.0%
ATGTTTGGCAAGTCGTCGGT+CGG + tig0003042:27056-27075 None:intergenic 50.0%
GAACATGGAGCAGGATGTGT+TGG - tig0003042:27201-27220 Msa1339170:intron 50.0%
AGGGGTAGGGGAAAATTCTC+CGG - tig0003042:27328-27347 Msa1339170:CDS 50.0%
TTTCGGCAAGCGAAAGGATG+AGG - tig0003042:27830-27849 Msa1339170:CDS 50.0%
AAATTGGGGGACGTTCCATG+CGG - tig0003042:27902-27921 Msa1339170:CDS 50.0%
ACGTTCCATGCGGTTATTGG+AGG - tig0003042:27912-27931 Msa1339170:CDS 50.0%
TGGAGTGGAATCGGAAGCCA+TGG + tig0003042:23313-23332 None:intergenic 55.0%
GGCTTCCGATTCCACTCCAA+TGG - tig0003042:23314-23333 Msa1339170:three_prime_UTR 55.0%
TGATTGATTGACGGCGGCGA+CGG + tig0003042:23508-23527 None:intergenic 55.0%
! TTCGGTTGAGGTGTTCCGGA+TGG + tig0003042:23533-23552 None:intergenic 55.0%
!! AAGTTGGTGTGGCAGGGACA+CGG + tig0003042:23634-23653 None:intergenic 55.0%
!! AGGTGGAAGTTGGTGTGGCA+GGG + tig0003042:23640-23659 None:intergenic 55.0%
AAGTCCTCGGAGGTGGAAGT+TGG + tig0003042:23650-23669 None:intergenic 55.0%
CATAGGAAAGTCCTCGGAGG+TGG + tig0003042:23657-23676 None:intergenic 55.0%
GGTTACGACATGGATGACGC+TGG - tig0003042:23695-23714 Msa1339170:intron 55.0%
ACGCTGGTCCGACTTACGTT+TGG - tig0003042:23711-23730 Msa1339170:intron 55.0%
CGCTGGTCCGACTTACGTTT+GGG - tig0003042:23712-23731 Msa1339170:intron 55.0%
GCTGGTCCGACTTACGTTTG+GGG - tig0003042:23713-23732 Msa1339170:intron 55.0%
CTGGTCCGACTTACGTTTGG+GGG - tig0003042:23714-23733 Msa1339170:intron 55.0%
! GATGGTGAGGTATCCTCTGG+AGG - tig0003042:23958-23977 Msa1339170:CDS 55.0%
ATTCTGCTCTGACCCGGTTC+CGG - tig0003042:24313-24332 Msa1339170:CDS 55.0%
TTACCTCTCTCCACCGGAAC+CGG + tig0003042:24329-24348 None:intergenic 55.0%
CCTCCTTCAGGTATCTCGTC+AGG + tig0003042:25262-25281 None:intergenic 55.0%
CCTGACGAGATACCTGAAGG+AGG - tig0003042:25259-25278 Msa1339170:CDS 55.0%
! CTGGTGGATACTGGAAAGCC+AGG - tig0003042:25319-25338 Msa1339170:intron 55.0%
CTCACCTCAACTCTGTCACC+TGG + tig0003042:25340-25359 None:intergenic 55.0%
AGGGCTATGAGTGTCAGGGT+AGG - tig0003042:25454-25473 Msa1339170:CDS 55.0%
GACATCAAAGTCCCGGATGC+TGG - tig0003042:25639-25658 Msa1339170:CDS 55.0%
! AAAGTCCCGGATGCTGGTTG+AGG - tig0003042:25645-25664 Msa1339170:CDS 55.0%
AGCATCCTCAACCAGCATCC+GGG + tig0003042:25653-25672 None:intergenic 55.0%
GCTGGTTGAGGATGCTATGG+AGG - tig0003042:25657-25676 Msa1339170:CDS 55.0%
AGTCACTGGCGCCAAACATC+TGG - tig0003042:25865-25884 Msa1339170:intron 55.0%
GTCACTGGCGCCAAACATCT+GGG - tig0003042:25866-25885 Msa1339170:intron 55.0%
! AGCTGCGACTTGCTTGTACC+AGG + tig0003042:26083-26102 None:intergenic 55.0%
CCACTGGTGTAAATGCCACG+TGG + tig0003042:26131-26150 None:intergenic 55.0%
CCACGTGGCATTTACACCAG+TGG - tig0003042:26128-26147 Msa1339170:CDS 55.0%
!! TTGGCTTGCGCAAACCCTAG+CGG - tig0003042:26629-26648 Msa1339170:intron 55.0%
AACCTAGTGTGGGTAGGGGT+TGG - tig0003042:26892-26911 Msa1339170:intron 55.0%
CTGGTGTTTCGGCAAGCGAA+AGG - tig0003042:27824-27843 Msa1339170:CDS 55.0%
GGGACGTTCCATGCGGTTAT+TGG - tig0003042:27909-27928 Msa1339170:CDS 55.0%
CGATGAGGCAGGGTCATCAT+TGG - tig0003042:28246-28265 Msa1339170:CDS 55.0%
GGGAGTTGGAGTGGCATCAG+AGG + tig0003042:23573-23592 None:intergenic 60.0%
!! GAGGTGGAAGTTGGTGTGGC+AGG + tig0003042:23641-23660 None:intergenic 60.0%
!! CTCGGAGGTGGAAGTTGGTG+TGG + tig0003042:23645-23664 None:intergenic 60.0%
CACACCAACTTCCACCTCCG+AGG - tig0003042:23643-23662 Msa1339170:CDS 60.0%
TCGCCGCCTTCGGAAGACAT+AGG + tig0003042:23674-23693 None:intergenic 60.0%
ATGTCTTCCGAAGGCGGCGA+CGG - tig0003042:23674-23693 Msa1339170:intron 60.0%
TACCTCTCTCCACCGGAACC+GGG + tig0003042:24328-24347 None:intergenic 60.0%
! GTGTGAGGCGTTCCTCCTTC+AGG + tig0003042:25274-25293 None:intergenic 60.0%
!! GCATCTGGCGCTAGCTTTCG+TGG - tig0003042:26029-26048 Msa1339170:intron 60.0%
!!! GCCCTAGTTTTGAGCGACCG+AGG - tig0003042:26311-26330 Msa1339170:intron 60.0%
TGCCAACCCCTACCCACACT+AGG + tig0003042:26897-26916 None:intergenic 60.0%
!! GGTGGAGGCATTTCGGCTTC+TGG - tig0003042:27654-27673 Msa1339170:intron 60.0%
GTTGCTACTCTCGCCAGCGA+AGG - tig0003042:28181-28200 Msa1339170:CDS 60.0%
GCCAACACCTACTCCTCCCC+CGG - tig0003042:23479-23498 Msa1339170:three_prime_UTR 65.0%
TTGATTGACGGCGGCGACGG+CGG + tig0003042:23505-23524 None:intergenic 65.0%
! GTGACGGGAGGGAGTTGGAG+TGG + tig0003042:23582-23601 None:intergenic 65.0%
TGGAAGGGATGCCGCCACCA+CGG + tig0003042:23607-23626 None:intergenic 65.0%
TTGGTGTGGCAGGGACACGG+CGG + tig0003042:23631-23650 None:intergenic 65.0%
GTCGTAACCGTCGCCGCCTT+CGG + tig0003042:23684-23703 None:intergenic 65.0%
AGGCGGCGACGGTTACGACA+TGG - tig0003042:23685-23704 Msa1339170:intron 65.0%
CAGTGGAAGGGGGAGCTCAG+CGG - tig0003042:26145-26164 Msa1339170:CDS 65.0%
GCCGGGGGAGGAGTAGGTGT+TGG + tig0003042:23483-23502 None:intergenic 70.0%
AAGGGATGCCGCCACCACGG+CGG + tig0003042:23604-23623 None:intergenic 70.0%
CAGGGACACGGCGGCTGGAA+GGG + tig0003042:23622-23641 None:intergenic 70.0%
CTGCTCTGACCCGGTTCCGG+TGG - tig0003042:24316-24335 Msa1339170:CDS 70.0%
GACCCGGTTCCGGTGGAGAG+AGG - tig0003042:24323-24342 Msa1339170:CDS 70.0%
CGCTGAGCTCCCCCTTCCAC+TGG + tig0003042:26147-26166 None:intergenic 70.0%
GGAAGGGGGAGCTCAGCGGT+TGG - tig0003042:26149-26168 Msa1339170:CDS 70.0%
!! CGGCGGTGACGGGAGGGAGT+TGG + tig0003042:23587-23606 None:intergenic 75.0%
ACTCCCTCCCGTCACCGCCG+TGG - tig0003042:23587-23606 Msa1339170:exon 75.0%
!! CCACCACGGCGGTGACGGGA+GGG + tig0003042:23593-23612 None:intergenic 75.0%
TCCCGTCACCGCCGTGGTGG+CGG - tig0003042:23593-23612 Msa1339170:exon 75.0%
TGCCGCCACCACGGCGGTGA+CGG + tig0003042:23598-23617 None:intergenic 75.0%
GCAGGGACACGGCGGCTGGA+AGG + tig0003042:23623-23642 None:intergenic 75.0%
TGTGGCAGGGACACGGCGGC+TGG + tig0003042:23627-23646 None:intergenic 75.0%
! ACGGCGGCCGGGGGAGGAGT+AGG + tig0003042:23489-23508 None:intergenic 80.0%
! TTGACGGCGGCGACGGCGGC+CGG + tig0003042:23501-23520 None:intergenic 80.0%
! CCCTCCCGTCACCGCCGTGG+TGG - tig0003042:23590-23609 Msa1339170:exon 80.0%
!!! GCCACCACGGCGGTGACGGG+AGG + tig0003042:23594-23613 None:intergenic 80.0%
! GCCGCCACCACGGCGGTGAC+GGG + tig0003042:23597-23616 None:intergenic 80.0%
! TGACGGCGGCGACGGCGGCC+GGG + tig0003042:23500-23519 None:intergenic 85.0%
! ACGGCGGCGACGGCGGCCGG+GGG + tig0003042:23498-23517 None:intergenic 90.0%
! GACGGCGGCGACGGCGGCCG+GGG + tig0003042:23499-23518 None:intergenic 90.0%
! GCGGCGACGGCGGCCGGGGG+AGG + tig0003042:23495-23514 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
tig0003042 gene 23171 28674 23171 ID=Msa1339170;Name=Msa1339170
tig0003042 mRNA 23171 28674 23171 ID=Msa1339170-mRNA-1;Parent=Msa1339170;Name=Msa1339170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=141|1|1|1|0.94|0.84|19|397|838
tig0003042 exon 23171 23212 23171 ID=Msa1339170-mRNA-1:exon:2017;Parent=Msa1339170-mRNA-1
tig0003042 exon 23247 23676 23247 ID=Msa1339170-mRNA-1:exon:2016;Parent=Msa1339170-mRNA-1
tig0003042 exon 23773 23826 23773 ID=Msa1339170-mRNA-1:exon:2015;Parent=Msa1339170-mRNA-1
tig0003042 exon 23912 24048 23912 ID=Msa1339170-mRNA-1:exon:2014;Parent=Msa1339170-mRNA-1
tig0003042 exon 24130 24208 24130 ID=Msa1339170-mRNA-1:exon:2013;Parent=Msa1339170-mRNA-1
tig0003042 exon 24289 24369 24289 ID=Msa1339170-mRNA-1:exon:2012;Parent=Msa1339170-mRNA-1
tig0003042 exon 24482 24643 24482 ID=Msa1339170-mRNA-1:exon:2011;Parent=Msa1339170-mRNA-1
tig0003042 exon 24740 24836 24740 ID=Msa1339170-mRNA-1:exon:2010;Parent=Msa1339170-mRNA-1
tig0003042 exon 25128 25288 25128 ID=Msa1339170-mRNA-1:exon:2009;Parent=Msa1339170-mRNA-1
tig0003042 exon 25451 25549 25451 ID=Msa1339170-mRNA-1:exon:2008;Parent=Msa1339170-mRNA-1
tig0003042 exon 25631 25843 25631 ID=Msa1339170-mRNA-1:exon:2007;Parent=Msa1339170-mRNA-1
tig0003042 exon 25922 26035 25922 ID=Msa1339170-mRNA-1:exon:2006;Parent=Msa1339170-mRNA-1
tig0003042 exon 26113 26235 26113 ID=Msa1339170-mRNA-1:exon:2005;Parent=Msa1339170-mRNA-1
tig0003042 exon 26335 26406 26335 ID=Msa1339170-mRNA-1:exon:2004;Parent=Msa1339170-mRNA-1
tig0003042 exon 26491 26623 26491 ID=Msa1339170-mRNA-1:exon:2003;Parent=Msa1339170-mRNA-1
tig0003042 exon 27328 27409 27328 ID=Msa1339170-mRNA-1:exon:2002;Parent=Msa1339170-mRNA-1
tig0003042 exon 27501 27629 27501 ID=Msa1339170-mRNA-1:exon:2001;Parent=Msa1339170-mRNA-1
tig0003042 exon 27736 28404 27736 ID=Msa1339170-mRNA-1:exon:2000;Parent=Msa1339170-mRNA-1
tig0003042 exon 28497 28674 28497 ID=Msa1339170-mRNA-1:exon:1999;Parent=Msa1339170-mRNA-1
tig0003042 five_prime_UTR 28534 28674 28534 ID=Msa1339170-mRNA-1:five_prime_utr;Parent=Msa1339170-mRNA-1
tig0003042 CDS 28497 28533 28497 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 27736 28404 27736 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 27501 27629 27501 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 27328 27409 27328 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 26491 26623 26491 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 26335 26406 26335 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 26113 26235 26113 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 25922 26035 25922 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 25631 25843 25631 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 25451 25549 25451 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 25128 25288 25128 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 24740 24836 24740 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 24482 24643 24482 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 24289 24369 24289 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 24130 24208 24130 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 23912 24048 23912 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 23773 23826 23773 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 CDS 23602 23676 23602 ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042 three_prime_UTR 23247 23601 23247 ID=Msa1339170-mRNA-1:three_prime_utr;Parent=Msa1339170-mRNA-1
tig0003042 three_prime_UTR 23171 23212 23171 ID=Msa1339170-mRNA-1:three_prime_utr;Parent=Msa1339170-mRNA-1
Gene Sequence

>Msa1339170

ATGGCTTCCGATTCCACTCCAATGGATTCCAACAATGGTCCTTCTTCACCGGACAATTCCAATTCAAGTCCAATTGCCAACACCTACTCCTCCCCCGGCCGCCGTCGCCGCCGTCAATCAATCACTCCATCCGGAACACCTCAACCGAACAGATCTCGCTTCGCTTCCTCTGATGCCACTCCAACTCCCTCCCGTCACCGCCGTGGTGGCGGCATCCCTTCCAGCCGCCGTGTCCCTGCCACACCAACTTCCACCTCCGAGGACTTTCCTATGTCTTCCGAAGGCGGCGACGGTTACGACATGGATGACGCTGGTCCGACTTACGTTTGGGGGACTAACATTAGTGTGGAGGATGTGAATGATGCGATTCAGAGGTTTTTGAAGCATTTTAGAGAAAAATCTGCTTCTCAAGGTGGTGATGATGATTTGGATATGGATTTGGATATTGAAGGGAAGTATGAGAAATTGATCAAACAGGTTATTGAATTGGAAGGTGAGTCTATTGATGTTGATGCACGTGATGTGTTTGATCACGATCACGAATTGTATAGTAAGATGGTGAGGTATCCTCTGGAGGTGCTTGCCATTTTTGATATGGTTTTGATGAACATGGTTACTAGGATGAACCCTATGTTTGAAAAGCATGTTCAAACTAGGATTTTTAATCTTAAGAGCTCAACTTCAATGAGGAATTTGAATCCTTCTGATATTGAGAGGATGGTATCCATGAAGGGAATGATTATTCGGTGTAGCTCCATTATACCAGAAATCAGGGAAGCTATATTCAGGTGTCTAGTATGTGGATTCTGCTCTGACCCGGTTCCGGTGGAGAGAGGACGAATTGCTGAACCTACTGTTTGCTTGAGGGAAGAGTGTCAGTCCAAGAATTCGATGACACTTGTTCACAACCGATGCAAGTTTACTGATAAACAAATTGTGAGGCTTCAGGAGACACCTGACGAGATACCTGAAGGAGGAACGCCTCACACTGTTAGCTTGCTATTGCATGACAAACTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGGGCTATGAGTGTCAGGGTAGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAAACGTATATTGATTGTCTTCACATAAAAAAGACATCAAAGTCCCGGATGCTGGTTGAGGATGCTATGGAGGTTGACAATGGCCAGGGCAGAAATCCAGAAGAAGTTTTATTTGATGAAGAAAAGGTGGCTAAACTGAAGGAGCTCTCAAAACAACCAGATATCTATGAAAGGCTGACAAAGTCACTGGCGCCAAACATCTGGGAGCTAGATGATGTAAAGAAAGGTCTTCTTTGCCAGCTTTTTGGGGGCAATGCTTTGAAGTTGGCATCTGGCGCTAGCTTTCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGTACAAGCAAGTCGCAGCTACTTCAGTACATACACAAACTTTCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCAGCGGTTGGATTGACTGCTTACGTGGCCAAAGATCCTGAAACAGGAGAAACAGTTCTTGAGAGTGGTGCCCTAGTTTTGAGCGACCGAGGTATCTGCTGCATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACACGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGCATTATTGCTTCCCTCAATGCAAGGACTTCGGTGTTGGCTTGCGCAAACCCTAGCGGTTCACGATATAATCCCCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGGTTTGATTTAATTTACTTAATGCTTGATAAGGCTGATGAACAGACCGACCGACGACTTGCCAAACATATTGTTTCCCTGCACTATAAGGATTATGAGAACATGGAGCAGGATGTGTTGGACATTTCTACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAACTATCAGATGAAGCTGCTGATGAATTGATTACAGGCTATGTAAAAATAAGGGGTAGGGGAAAATTCTCCGGAAGTAGCAAAAAGGTAATAACGGCAACTCCAAGGCAGATTGAGAGTCTATTACGACTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATCGGTCGAAAAACATGATGTGGTGGAGGCATTTCGGCTTCTGGAAGTTGCAATGCAGCAATCTGCAATGGATACCAGAACTGGAACTATTGACATGGATCTCATAACTACTGGTGTTTCGGCAAGCGAAAGGATGAGGCGAGAAAGTTTGGTTCAAGACACTCGCAACATGATCATGGAGAAGATGCAAATTGGGGGACGTTCCATGCGGTTATTGGAGATATTGGAAGAACTAAAGAATCAGAGCCCTGGCAGCGAAATTCATCTTAATGATCTAAGGAGTGCAGTTGCTACTCTCGCCAGCGAAGGATTTGTTTCCATGGCTGGTGACAGTGTAAAAAGAACATGA
Protein sequence

>Msa1339170

MASDSTPMDSNNGPSSPDNSNSSPIANTYSSPGRRRRRQSITPSGTPQPNRSRFASSDATPTPSRHRRGGGIPSSRRVPATPTSTSEDFPMSSEGGDGYDMDDAGPTYVWGTNISVEDVNDAIQRFLKHFREKSASQGGDDDLDMDLDIEGKYEKLIKQVIELEGESIDVDARDVFDHDHELYSKMVRYPLEVLAIFDMVLMNMVTRMNPMFEKHVQTRIFNLKSSTSMRNLNPSDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQSKNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEVDNGQGRNPEEVLFDEEKVAKLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHYKDYENMEQDVLDISTLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFSGSSKKVITATPRQIESLLRLSEALARIRFSESVEKHDVVEAFRLLEVAMQQSAMDTRTGTIDMDLITTGVSASERMRRESLVQDTRNMIMEKMQIGGRSMRLLEILEELKNQSPGSEIHLNDLRSAVATLASEGFVSMAGDSVKRT*