AlfalfaGEDB | Msa1339170

M. sativa cultivar zhongmu-4 / Msa1339170

KEGG: K02212
GO: GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112
PFAM: PF14551.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339170	XP_024636403.2	99.284	838	6	0	1	838	1	838	0.0	1718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339170	sp\|Q0WVF5\|MCM4_ARATH	73.055	861	193	8	1	837	1	846	0.0	1240

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339170	A0A396I6X1	99.284	838	6	0	1	838	1	838	0.0	1718

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa1339170	0.820002	8.631561e-53	-8.615850e-47
Msa0005020	Msa1339170	0.857957	1.145251e-62	-8.615850e-47
Msa0015570	Msa1339170	0.845042	5.197652e-59	-8.615850e-47
Msa0016040	Msa1339170	0.867026	1.853315e-65	-8.615850e-47
Msa0016530	Msa1339170	0.839118	1.918722e-57	-8.615850e-47
Msa0018920	Msa1339170	0.881737	1.871123e-70	-8.615850e-47
Msa0019930	Msa1339170	0.867885	9.838443e-66	-8.615850e-47
Msa0020540	Msa1339170	0.872372	3.346399e-67	-8.615850e-47
Msa0025160	Msa1339170	0.828369	9.339400e-55	-8.615850e-47
Msa0025580	Msa1339170	0.813676	2.269121e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339170	MtrunA17_Chr4g0035581	99.284	838	6	0	1	838	1	838	0.0	1718
Msa1339170	MtrunA17_Chr8g0381871	34.242	660	375	11	119	741	16	653	8.75e-116	371
Msa1339170	MtrunA17_Chr7g0269941	39.726	584	313	13	228	800	144	699	5.53e-114	363
Msa1339170	MtrunA17_Chr2g0296441	34.076	628	358	12	153	741	34	644	1.70e-110	356
Msa1339170	MtrunA17_Chr4g0052131	33.739	658	357	13	141	746	17	647	1.45e-109	353
Msa1339170	MtrunA17_Chr4g0065401	35.085	647	363	14	170	788	68	685	5.49e-106	343
Msa1339170	MtrunA17_Chr4g0068511	34.370	611	347	10	152	737	238	819	2.83e-103	340
Msa1339170	MtrunA17_Chr7g0263661	32.868	645	353	18	178	755	87	718	8.33e-91	304
Msa1339170	MtrunA17_Chr2g0279361	31.188	606	364	15	168	746	41	620	5.13e-75	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339170	AT2G16440.1	73.055	861	193	8	1	837	1	846	0.0	1240
Msa1339170	AT5G44635.1	34.483	696	390	15	94	755	2	665	3.40e-118	378
Msa1339170	AT5G44635.2	34.483	696	390	15	94	755	2	665	8.58e-118	378
Msa1339170	AT4G02060.2	37.713	586	324	12	227	800	141	697	1.28e-108	349
Msa1339170	AT4G02060.1	37.713	586	324	12	227	800	141	697	1.28e-108	349
Msa1339170	AT1G44900.2	34.049	652	355	16	121	737	210	821	4.80e-107	351
Msa1339170	AT1G44900.1	34.049	652	355	16	121	737	212	823	7.03e-107	350
Msa1339170	AT5G46280.3	31.776	642	373	9	149	746	19	639	1.78e-105	340
Msa1339170	AT2G07690.1	34.337	664	371	14	170	801	64	694	3.23e-105	341
Msa1339170	AT5G46280.1	31.776	642	373	9	149	746	19	639	1.47e-104	340

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Find 253 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTGATAAACTAACG+GGG	0.751048	tig0003042:+23425	None:intergenic
AAAATGGCAAGCACCTCCAG+AGG	0.658144	tig0003042:+27852	None:intergenic
AAACAGGTTATTGAATTGGA+AGG	0.555576	tig0003042:-27948	Msa1339170:CDS
AAAGAAAGGTCTTCTTTGCC+AGG	0.485292	tig0003042:-25921	Msa1339170:intron
AAAGCCAGGTGACAGAGTTG+AGG	0.641668	tig0003042:-26490	Msa1339170:intron
AAAGTCCCGGATGCTGGTTG+AGG	0.573038	tig0003042:-26178	Msa1339170:CDS
AAATCAGGGAAGCTATATTC+AGG	0.467213	tig0003042:-27547	Msa1339170:CDS
AACAACCAGATATCTATGAA+AGG	0.595448	tig0003042:-25988	Msa1339170:CDS
AACAAGTGTCATCGAATTCT+TGG	0.324058	tig0003042:+27342	None:intergenic
AACCTGGACAAAAGAGTGGG+AGG	0.651252	tig0003042:+25125	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATATGGATTTGGATATTGA+AGG	-	tig0003042:23833-23852	Msa1339170:intron	30.0%
GTATGAGAAATTGATCAAAC+AGG	-	tig0003042:23859-23878	Msa1339170:intron	30.0%
GATCAAACAGGTTATTGAAT+TGG	-	tig0003042:23871-23890	Msa1339170:intron	30.0%
AAACAGGTTATTGAATTGGA+AGG	-	tig0003042:23875-23894	Msa1339170:intron	30.0%
TCACGAATTGTATAGTAAGA+TGG	-	tig0003042:23940-23959	Msa1339170:CDS	30.0%
AATTGTATAGTAAGATGGTG+AGG	-	tig0003042:23945-23964	Msa1339170:CDS	30.0%
ACATAGCATACATAACGTAA+GGG	+	tig0003042:24654-24673	None:intergenic	30.0%
TACATAGCATACATAACGTA+AGG	+	tig0003042:24655-24674	None:intergenic	30.0%
TTTCCTGCAAAGTAAAACAT+AGG	-	tig0003042:24744-24763	Msa1339170:CDS	30.0%
TGGAATATAACTTTCTGAAC+TGG	-	tig0003042:24781-24800	Msa1339170:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0003042	gene	23171	28674	23171	ID=Msa1339170;Name=Msa1339170
tig0003042	mRNA	23171	28674	23171	ID=Msa1339170-mRNA-1;Parent=Msa1339170;Name=Msa1339170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=141\|1\|1\|1\|0.94\|0.84\|19\|397\|838
tig0003042	exon	23171	23212	23171	ID=Msa1339170-mRNA-1:exon:2017;Parent=Msa1339170-mRNA-1
tig0003042	exon	23247	23676	23247	ID=Msa1339170-mRNA-1:exon:2016;Parent=Msa1339170-mRNA-1
tig0003042	exon	23773	23826	23773	ID=Msa1339170-mRNA-1:exon:2015;Parent=Msa1339170-mRNA-1
tig0003042	exon	23912	24048	23912	ID=Msa1339170-mRNA-1:exon:2014;Parent=Msa1339170-mRNA-1
tig0003042	exon	24130	24208	24130	ID=Msa1339170-mRNA-1:exon:2013;Parent=Msa1339170-mRNA-1
tig0003042	exon	24289	24369	24289	ID=Msa1339170-mRNA-1:exon:2012;Parent=Msa1339170-mRNA-1
tig0003042	exon	24482	24643	24482	ID=Msa1339170-mRNA-1:exon:2011;Parent=Msa1339170-mRNA-1
tig0003042	exon	24740	24836	24740	ID=Msa1339170-mRNA-1:exon:2010;Parent=Msa1339170-mRNA-1
tig0003042	exon	25128	25288	25128	ID=Msa1339170-mRNA-1:exon:2009;Parent=Msa1339170-mRNA-1
tig0003042	exon	25451	25549	25451	ID=Msa1339170-mRNA-1:exon:2008;Parent=Msa1339170-mRNA-1
tig0003042	exon	25631	25843	25631	ID=Msa1339170-mRNA-1:exon:2007;Parent=Msa1339170-mRNA-1
tig0003042	exon	25922	26035	25922	ID=Msa1339170-mRNA-1:exon:2006;Parent=Msa1339170-mRNA-1
tig0003042	exon	26113	26235	26113	ID=Msa1339170-mRNA-1:exon:2005;Parent=Msa1339170-mRNA-1
tig0003042	exon	26335	26406	26335	ID=Msa1339170-mRNA-1:exon:2004;Parent=Msa1339170-mRNA-1
tig0003042	exon	26491	26623	26491	ID=Msa1339170-mRNA-1:exon:2003;Parent=Msa1339170-mRNA-1
tig0003042	exon	27328	27409	27328	ID=Msa1339170-mRNA-1:exon:2002;Parent=Msa1339170-mRNA-1
tig0003042	exon	27501	27629	27501	ID=Msa1339170-mRNA-1:exon:2001;Parent=Msa1339170-mRNA-1
tig0003042	exon	27736	28404	27736	ID=Msa1339170-mRNA-1:exon:2000;Parent=Msa1339170-mRNA-1
tig0003042	exon	28497	28674	28497	ID=Msa1339170-mRNA-1:exon:1999;Parent=Msa1339170-mRNA-1
tig0003042	five_prime_UTR	28534	28674	28534	ID=Msa1339170-mRNA-1:five_prime_utr;Parent=Msa1339170-mRNA-1
tig0003042	CDS	28497	28533	28497	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	27736	28404	27736	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	27501	27629	27501	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	27328	27409	27328	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	26491	26623	26491	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	26335	26406	26335	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	26113	26235	26113	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	25922	26035	25922	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	25631	25843	25631	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	25451	25549	25451	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	25128	25288	25128	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	24740	24836	24740	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	24482	24643	24482	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	24289	24369	24289	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	24130	24208	24130	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	23912	24048	23912	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	23773	23826	23773	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	CDS	23602	23676	23602	ID=Msa1339170-mRNA-1:cds;Parent=Msa1339170-mRNA-1
tig0003042	three_prime_UTR	23247	23601	23247	ID=Msa1339170-mRNA-1:three_prime_utr;Parent=Msa1339170-mRNA-1
tig0003042	three_prime_UTR	23171	23212	23171	ID=Msa1339170-mRNA-1:three_prime_utr;Parent=Msa1339170-mRNA-1

Gene Sequence

>Msa1339170

ATGGCTTCCGATTCCACTCCAATGGATTCCAACAATGGTCCTTCTTCACCGGACAATTCCAATTCAAGTCCAATTGCCAACACCTACTCCTCCCCCGGCCGCCGTCGCCGCCGTCAATCAATCACTCCATCCGGAACACCTCAACCGAACAGATCTCGCTTCGCTTCCTCTGATGCCACTCCAACTCCCTCCCGTCACCGCCGTGGTGGCGGCATCCCTTCCAGCCGCCGTGTCCCTGCCACACCAACTTCCACCTCCGAGGACTTTCCTATGTCTTCCGAAGGCGGCGACGGTTACGACATGGATGACGCTGGTCCGACTTACGTTTGGGGGACTAACATTAGTGTGGAGGATGTGAATGATGCGATTCAGAGGTTTTTGAAGCATTTTAGAGAAAAATCTGCTTCTCAAGGTGGTGATGATGATTTGGATATGGATTTGGATATTGAAGGGAAGTATGAGAAATTGATCAAACAGGTTATTGAATTGGAAGGTGAGTCTATTGATGTTGATGCACGTGATGTGTTTGATCACGATCACGAATTGTATAGTAAGATGGTGAGGTATCCTCTGGAGGTGCTTGCCATTTTTGATATGGTTTTGATGAACATGGTTACTAGGATGAACCCTATGTTTGAAAAGCATGTTCAAACTAGGATTTTTAATCTTAAGAGCTCAACTTCAATGAGGAATTTGAATCCTTCTGATATTGAGAGGATGGTATCCATGAAGGGAATGATTATTCGGTGTAGCTCCATTATACCAGAAATCAGGGAAGCTATATTCAGGTGTCTAGTATGTGGATTCTGCTCTGACCCGGTTCCGGTGGAGAGAGGACGAATTGCTGAACCTACTGTTTGCTTGAGGGAAGAGTGTCAGTCCAAGAATTCGATGACACTTGTTCACAACCGATGCAAGTTTACTGATAAACAAATTGTGAGGCTTCAGGAGACACCTGACGAGATACCTGAAGGAGGAACGCCTCACACTGTTAGCTTGCTATTGCATGACAAACTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGGGCTATGAGTGTCAGGGTAGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAAACGTATATTGATTGTCTTCACATAAAAAAGACATCAAAGTCCCGGATGCTGGTTGAGGATGCTATGGAGGTTGACAATGGCCAGGGCAGAAATCCAGAAGAAGTTTTATTTGATGAAGAAAAGGTGGCTAAACTGAAGGAGCTCTCAAAACAACCAGATATCTATGAAAGGCTGACAAAGTCACTGGCGCCAAACATCTGGGAGCTAGATGATGTAAAGAAAGGTCTTCTTTGCCAGCTTTTTGGGGGCAATGCTTTGAAGTTGGCATCTGGCGCTAGCTTTCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGTACAAGCAAGTCGCAGCTACTTCAGTACATACACAAACTTTCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCAGCGGTTGGATTGACTGCTTACGTGGCCAAAGATCCTGAAACAGGAGAAACAGTTCTTGAGAGTGGTGCCCTAGTTTTGAGCGACCGAGGTATCTGCTGCATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACACGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGCATTATTGCTTCCCTCAATGCAAGGACTTCGGTGTTGGCTTGCGCAAACCCTAGCGGTTCACGATATAATCCCCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGGTTTGATTTAATTTACTTAATGCTTGATAAGGCTGATGAACAGACCGACCGACGACTTGCCAAACATATTGTTTCCCTGCACTATAAGGATTATGAGAACATGGAGCAGGATGTGTTGGACATTTCTACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAACTATCAGATGAAGCTGCTGATGAATTGATTACAGGCTATGTAAAAATAAGGGGTAGGGGAAAATTCTCCGGAAGTAGCAAAAAGGTAATAACGGCAACTCCAAGGCAGATTGAGAGTCTATTACGACTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATCGGTCGAAAAACATGATGTGGTGGAGGCATTTCGGCTTCTGGAAGTTGCAATGCAGCAATCTGCAATGGATACCAGAACTGGAACTATTGACATGGATCTCATAACTACTGGTGTTTCGGCAAGCGAAAGGATGAGGCGAGAAAGTTTGGTTCAAGACACTCGCAACATGATCATGGAGAAGATGCAAATTGGGGGACGTTCCATGCGGTTATTGGAGATATTGGAAGAACTAAAGAATCAGAGCCCTGGCAGCGAAATTCATCTTAATGATCTAAGGAGTGCAGTTGCTACTCTCGCCAGCGAAGGATTTGTTTCCATGGCTGGTGACAGTGTAAAAAGAACATGA

Protein sequence

>Msa1339170

MASDSTPMDSNNGPSSPDNSNSSPIANTYSSPGRRRRRQSITPSGTPQPNRSRFASSDATPTPSRHRRGGGIPSSRRVPATPTSTSEDFPMSSEGGDGYDMDDAGPTYVWGTNISVEDVNDAIQRFLKHFREKSASQGGDDDLDMDLDIEGKYEKLIKQVIELEGESIDVDARDVFDHDHELYSKMVRYPLEVLAIFDMVLMNMVTRMNPMFEKHVQTRIFNLKSSTSMRNLNPSDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQSKNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEVDNGQGRNPEEVLFDEEKVAKLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHYKDYENMEQDVLDISTLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFSGSSKKVITATPRQIESLLRLSEALARIRFSESVEKHDVVEAFRLLEVAMQQSAMDTRTGTIDMDLITTGVSASERMRRESLVQDTRNMIMEKMQIGGRSMRLLEILEELKNQSPGSEIHLNDLRSAVATLASEGFVSMAGDSVKRT*