Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602020 | XP_024637349.1 | 83.140 | 605 | 19 | 6 | 1 | 604 | 1 | 523 | 0.0 | 956 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0331000 | Msa0602020 | 0.820221 | 7.692023e-53 | -8.615850e-47 |
| Msa0547290 | Msa0602020 | 0.896668 | 2.957947e-76 | -8.615850e-47 |
| Msa0602020 | Msa0643120 | 0.806044 | 9.959720e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602020 | MtrunA17_Chr4g0029221 | 83.140 | 605 | 19 | 6 | 1 | 604 | 1 | 523 | 0.0 | 956 |
| Msa0602020 | MtrunA17_Chr2g0326551 | 51.461 | 616 | 173 | 17 | 1 | 604 | 1 | 502 | 1.84e-180 | 520 |
| Msa0602020 | MtrunA17_Chr1g0181371 | 43.902 | 533 | 190 | 14 | 42 | 565 | 34 | 466 | 1.08e-130 | 392 |
| Msa0602020 | MtrunA17_Chr3g0120281 | 41.429 | 490 | 185 | 12 | 88 | 558 | 37 | 443 | 1.52e-102 | 319 |
| Msa0602020 | MtrunA17_Chr2g0286611 | 31.510 | 457 | 186 | 13 | 116 | 554 | 58 | 405 | 9.31e-55 | 191 |
| Msa0602020 | MtrunA17_Chr7g0246271 | 35.122 | 205 | 84 | 3 | 277 | 480 | 45 | 201 | 2.04e-29 | 115 |
| Msa0602020 | MtrunA17_Chr7g0246251 | 30.047 | 213 | 75 | 4 | 295 | 480 | 1 | 166 | 2.36e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602020 | AT5G60580.1 | 51.087 | 552 | 162 | 14 | 1 | 550 | 1 | 446 | 2.62e-154 | 452 |
| Msa0602020 | AT5G60580.3 | 51.087 | 552 | 162 | 14 | 1 | 550 | 1 | 446 | 2.62e-154 | 452 |
| Msa0602020 | AT5G60580.4 | 50.447 | 559 | 162 | 15 | 1 | 550 | 1 | 453 | 2.10e-151 | 445 |
| Msa0602020 | AT5G60580.2 | 50.447 | 559 | 162 | 15 | 1 | 550 | 1 | 453 | 2.10e-151 | 445 |
| Msa0602020 | AT3G09760.1 | 39.138 | 603 | 232 | 17 | 4 | 591 | 9 | 491 | 6.54e-114 | 349 |
| Msa0602020 | AT5G03180.2 | 39.313 | 524 | 211 | 16 | 38 | 555 | 29 | 451 | 1.53e-99 | 311 |
| Msa0602020 | AT5G03180.4 | 39.216 | 510 | 203 | 16 | 52 | 555 | 8 | 416 | 4.63e-98 | 306 |
| Msa0602020 | AT5G03180.1 | 39.313 | 524 | 207 | 17 | 38 | 555 | 29 | 447 | 2.08e-96 | 303 |
| Msa0602020 | AT5G03180.3 | 39.551 | 445 | 200 | 14 | 38 | 476 | 29 | 410 | 4.14e-79 | 256 |
| Msa0602020 | AT5G03180.5 | 39.551 | 445 | 196 | 15 | 38 | 476 | 29 | 406 | 4.52e-76 | 248 |
| Msa0602020 | AT3G06330.4 | 33.929 | 392 | 163 | 10 | 166 | 556 | 11 | 307 | 8.68e-53 | 183 |
| Msa0602020 | AT3G06330.1 | 32.574 | 439 | 195 | 11 | 119 | 556 | 80 | 418 | 3.13e-52 | 185 |
| Msa0602020 | AT3G06330.2 | 35.714 | 280 | 103 | 4 | 277 | 556 | 47 | 249 | 1.44e-49 | 173 |
| Msa0602020 | AT3G06330.3 | 35.455 | 330 | 153 | 10 | 119 | 447 | 80 | 350 | 1.94e-37 | 143 |
| Msa0602020 | AT5G18760.1 | 41.579 | 190 | 75 | 4 | 277 | 466 | 201 | 354 | 4.89e-37 | 143 |
| Msa0602020 | AT5G18760.2 | 31.200 | 375 | 140 | 15 | 63 | 423 | 41 | 311 | 1.68e-25 | 108 |
| Msa0602020 | AT2G37950.1 | 38.235 | 102 | 60 | 2 | 233 | 333 | 40 | 139 | 1.99e-14 | 73.2 |
| Msa0602020 | AT5G05830.1 | 43.750 | 80 | 40 | 2 | 272 | 347 | 72 | 150 | 3.71e-11 | 63.5 |
Find 139 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACTTAGTTAATAGTTAT+TGG | 0.150386 | 4_2:+45239593 | None:intergenic |
| CTTATAGATGATTTGCCTTT+TGG | 0.170375 | 4_2:+45238075 | None:intergenic |
| CTTGCAACATTTGCTGGTTT+TGG | 0.182361 | 4_2:-45235863 | Msa0602020:CDS |
| TGCTGCCAAAATTGAGTTTC+AGG | 0.184858 | 4_2:-45238047 | Msa0602020:CDS |
| ACAAAGAATGTGCTATTAAA+TGG | 0.203935 | 4_2:-45237325 | Msa0602020:CDS |
| GACAATGATCTTGATATTAA+AGG | 0.208947 | 4_2:+45237949 | None:intergenic |
| GGGATTCGTCGTATTGAATT+AGG | 0.215985 | 4_2:+45236036 | None:intergenic |
| CTATACCTGAAACTCAATTT+TGG | 0.221918 | 4_2:+45238042 | None:intergenic |
| TCATTGCCATTAGGAGAAAT+TGG | 0.239649 | 4_2:-45237886 | Msa0602020:CDS |
| ATCCTTCTTGCAACATTTGC+TGG | 0.241759 | 4_2:-45235869 | Msa0602020:CDS |
| TTTAAACTTCCAAGTTATTC+TGG | 0.255199 | 4_2:-45239496 | Msa0602020:five_prime_UTR |
| GTGTTCTTGATGGTATTTCT+AGG | 0.297442 | 4_2:+45238244 | None:intergenic |
| TCAGTTTGGAGTGCTGCTTA+TGG | 0.311114 | 4_2:-45235054 | Msa0602020:three_prime_UTR |
| CACTCTTCTTGTGTTCTTGA+TGG | 0.312086 | 4_2:+45238234 | None:intergenic |
| TATTAAATGGTTTAGTATAA+AGG | 0.322304 | 4_2:-45237312 | Msa0602020:CDS |
| ATTAAATGGTTTAGTATAAA+GGG | 0.326909 | 4_2:-45237311 | Msa0602020:CDS |
| TTTCCACCATGAGTAGATTC+AGG | 0.327029 | 4_2:+45237853 | None:intergenic |
| CTACACACCGCCTCTTCTTC+AGG | 0.329720 | 4_2:+45237428 | None:intergenic |
| CAAAATTGAGTTTCAGGTAT+AGG | 0.332561 | 4_2:-45238041 | Msa0602020:CDS |
| TCCTTTACTCGAGGAGTAGA+AGG | 0.334132 | 4_2:+45237620 | None:intergenic |
| TTCTAGGCCTAGAAAATAGA+AGG | 0.348270 | 4_2:+45235093 | None:intergenic |
| TGCATAACTTATTGTGTATA+GGG | 0.367788 | 4_2:-45235601 | Msa0602020:intron |
| TAGGGTTTGGCAGGAAGTTC+CGG | 0.368420 | 4_2:-45236850 | Msa0602020:CDS |
| AATTGAGCAGACAAATAAAA+TGG | 0.369527 | 4_2:+45236876 | None:intergenic |
| CATAAGAAAATTCACTCTCT+TGG | 0.376527 | 4_2:+45238149 | None:intergenic |
| CTAAGTGGTATGGCTATCAT+TGG | 0.377267 | 4_2:-45239579 | Msa0602020:five_prime_UTR |
| AGACCTAATACACAGGAAAA+TGG | 0.380336 | 4_2:+45236574 | None:intergenic |
| GAATCTACTCATGGTGGAAA+TGG | 0.382585 | 4_2:-45237850 | Msa0602020:CDS |
| GAATGTCCAATTTCTCCTAA+TGG | 0.383436 | 4_2:+45237880 | None:intergenic |
| ACTGATTCATTAGAATGAAC+TGG | 0.387760 | 4_2:+45236015 | None:intergenic |
| GACATGTGATGTCTGCAAAA+AGG | 0.391308 | 4_2:-45237282 | Msa0602020:CDS |
| TGCATCCTTCCAGTTTGCTC+TGG | 0.394539 | 4_2:-45236172 | Msa0602020:CDS |
| GGAGTAGGACTTGGTGTCAT+TGG | 0.395438 | 4_2:+45238183 | None:intergenic |
| TTGTCCTTGCTGTTGTTGGC+AGG | 0.397366 | 4_2:+45237680 | None:intergenic |
| AGAACTTCATCATTGCCATT+AGG | 0.398079 | 4_2:-45237895 | Msa0602020:CDS |
| ACAGCTACATTCCAACTTGA+AGG | 0.402108 | 4_2:+45237370 | None:intergenic |
| CTGCATAACTTATTGTGTAT+AGG | 0.405691 | 4_2:-45235602 | Msa0602020:three_prime_UTR |
| ATCCTTCCAGTTTGCTCTGG+TGG | 0.406030 | 4_2:-45236169 | Msa0602020:CDS |
| TGCTTGTTGAGTTCTTTAGA+TGG | 0.407275 | 4_2:-45235817 | Msa0602020:CDS |
| CTGTAAAGGCGAACTTGCTT+TGG | 0.411554 | 4_2:-45237351 | Msa0602020:CDS |
| CAGTGATGAGCAGGTTCATA+TGG | 0.413395 | 4_2:-45236200 | Msa0602020:CDS |
| CAAAGTACCTTGTGAACAAC+AGG | 0.414633 | 4_2:+45239345 | None:intergenic |
| ATAAGAAAATTCACTCTCTT+GGG | 0.420956 | 4_2:+45238150 | None:intergenic |
| TGCACGCAGTCAGCCACATC+TGG | 0.432809 | 4_2:-45237082 | Msa0602020:CDS |
| CACTATAGATTGATTGTGGT+TGG | 0.433741 | 4_2:+45235691 | None:intergenic |
| GGATCCAGAGTGTTCGAAAT+CGG | 0.434250 | 4_2:-45237229 | Msa0602020:CDS |
| ACAGCAAGGACAAAAGTATA+AGG | 0.436445 | 4_2:-45237670 | Msa0602020:CDS |
| ACGTCCCCGCCAAAGGATAC+TGG | 0.439438 | 4_2:-45237578 | Msa0602020:intron |
| CCTGCTTGTGTCATCGGTAG+AGG | 0.440663 | 4_2:+45235755 | None:intergenic |
| ACCTTCCTGTCACTCTATTA+CGG | 0.442572 | 4_2:-45237250 | Msa0602020:CDS |
| TTGGTAAAATATTTACTCCT+AGG | 0.443288 | 4_2:-45237924 | Msa0602020:CDS |
| ATGTAGTTACTTTACTTACA+TGG | 0.443306 | 4_2:-45235126 | Msa0602020:three_prime_UTR |
| AGAGAACCACCAGAGCAAAC+TGG | 0.443716 | 4_2:+45236163 | None:intergenic |
| TGCTGTCCTGCTTGTGTCAT+CGG | 0.447497 | 4_2:+45235749 | None:intergenic |
| CCTGGATCTGCAACACCAAA+AGG | 0.448813 | 4_2:-45238090 | Msa0602020:CDS |
| ACTGTAACAACGCCACGTTC+AGG | 0.453422 | 4_2:-45235719 | Msa0602020:CDS |
| TTGACTATACCAGTATCCTT+TGG | 0.457337 | 4_2:+45237569 | None:intergenic |
| AAGTAACTACATATTGCATT+TGG | 0.459146 | 4_2:+45235137 | None:intergenic |
| ATTTGTGTCCAGTGATGAGC+AGG | 0.460699 | 4_2:-45236209 | Msa0602020:intron |
| ACAGGAAAATGGAAGAGATA+TGG | 0.465594 | 4_2:+45236585 | None:intergenic |
| CGTGGCGTTGTTACAGTTCG+AGG | 0.483224 | 4_2:+45235725 | None:intergenic |
| TTCCACCATGAGTAGATTCA+GGG | 0.484995 | 4_2:+45237854 | None:intergenic |
| CTATACCAGTATCCTTTGGC+GGG | 0.485212 | 4_2:+45237573 | None:intergenic |
| TTCTCTTCCTGTTGTTCACA+AGG | 0.486153 | 4_2:-45239352 | Msa0602020:intron |
| TCCTTCTACTCCTCGAGTAA+AGG | 0.487258 | 4_2:-45237621 | Msa0602020:CDS |
| ACTCTCTTGGGAGTAGGAGT+TGG | 0.487747 | 4_2:+45238162 | None:intergenic |
| TTGAGTTCTTTAGATGGAGA+AGG | 0.494098 | 4_2:-45235811 | Msa0602020:CDS |
| TAGATTGATTGTGGTTGGAT+TGG | 0.494569 | 4_2:+45235696 | None:intergenic |
| GTAGGAGTTGGAGTAGGACT+TGG | 0.496630 | 4_2:+45238174 | None:intergenic |
| GCCAATAACTATTAACTAAG+TGG | 0.499884 | 4_2:-45239594 | Msa0602020:five_prime_UTR |
| GCTCCGACAAATAATTCTCC+TGG | 0.502053 | 4_2:-45238108 | Msa0602020:CDS |
| GTCTGATCAGACTTCAAGTT+CGG | 0.504324 | 4_2:-45237056 | Msa0602020:intron |
| ATAGGATGATGATGACTCAA+TGG | 0.511888 | 4_2:-45238319 | Msa0602020:intron |
| TGGATCCGTAATAGAGTGAC+AGG | 0.523696 | 4_2:+45237245 | None:intergenic |
| TAGGATGATGATGACTCAAT+GGG | 0.524861 | 4_2:-45238318 | Msa0602020:CDS |
| GGCGGTGTGTAGAATCTGTC+TGG | 0.532774 | 4_2:-45237417 | Msa0602020:CDS |
| AAGTTGGAATGTAGCTGTAA+AGG | 0.537209 | 4_2:-45237365 | Msa0602020:CDS |
| GATCCAGGAGAATTATTTGT+CGG | 0.538191 | 4_2:+45238105 | None:intergenic |
| TTGTGCTTCATAGGTACTGA+TGG | 0.540626 | 4_2:-45235314 | Msa0602020:intron |
| AAAGTGAGAGTGAAGGGTTG+AGG | 0.541365 | 4_2:-45235207 | Msa0602020:three_prime_UTR |
| TAACTATTAACTAAGTGGTA+TGG | 0.544420 | 4_2:-45239589 | Msa0602020:five_prime_UTR |
| TGCTTCGATTAGGAGCTTCG+TGG | 0.547637 | 4_2:-45236927 | Msa0602020:intron |
| CTGATTCATTAGAATGAACT+GGG | 0.550120 | 4_2:+45236016 | None:intergenic |
| CTCTATGACATCATCAACCA+TGG | 0.553260 | 4_2:-45236545 | Msa0602020:CDS |
| GGACAAAAGTATAAGGAGGA+TGG | 0.553352 | 4_2:-45237663 | Msa0602020:CDS |
| AAAACAAAACCAGAATAACT+TGG | 0.555882 | 4_2:+45239487 | None:intergenic |
| ATATCAAGATCATTGTCACT+TGG | 0.558834 | 4_2:-45237943 | Msa0602020:CDS |
| TCTTTAGATGGAGAAGGAGA+TGG | 0.561098 | 4_2:-45235805 | Msa0602020:CDS |
| CTGCTTGTGTCATCGGTAGA+GGG | 0.562795 | 4_2:+45235756 | None:intergenic |
| GCTTGTCATTGTTAGCATGT+TGG | 0.565634 | 4_2:-45236826 | Msa0602020:CDS |
| AAATTCACTCTCTTGGGAGT+AGG | 0.568812 | 4_2:+45238156 | None:intergenic |
| GGTGGAAATGGAAGTGTTGG+CGG | 0.573518 | 4_2:-45237838 | Msa0602020:CDS |
| TAGGTCAAAGTGAGAGTGAA+GGG | 0.574000 | 4_2:-45235213 | Msa0602020:three_prime_UTR |
| ATGCTAACAATGACAAGCAC+CGG | 0.575004 | 4_2:+45236831 | None:intergenic |
| AAAAGTCGAATACACCTACT+CGG | 0.575041 | 4_2:-45238002 | Msa0602020:CDS |
| CATTCCGATTTCGAACACTC+TGG | 0.575417 | 4_2:+45237225 | None:intergenic |
| ACTATACCAGTATCCTTTGG+CGG | 0.577961 | 4_2:+45237572 | None:intergenic |
| GCTTCTCATGACAAAGCTAG+TGG | 0.578689 | 4_2:-45235625 | Msa0602020:three_prime_UTR |
| TTCAGCACATGAAAACCAGA+AGG | 0.578828 | 4_2:-45235287 | Msa0602020:three_prime_UTR |
| GTTTGGAGTGCTGCTTATGG+AGG | 0.579410 | 4_2:-45235051 | Msa0602020:three_prime_UTR |
| TCATTTCCTTCCTTTACTCG+AGG | 0.581239 | 4_2:+45237611 | None:intergenic |
| AGGAGGCGAGACCTTCAAGT+TGG | 0.587069 | 4_2:-45237381 | Msa0602020:CDS |
| GTTGAAGACGTCCCCGCCAA+AGG | 0.587869 | 4_2:-45237585 | Msa0602020:CDS |
| TTTGCACTATAGATTGATTG+TGG | 0.589452 | 4_2:+45235687 | None:intergenic |
| CATGGTTGATGATGTCATAG+AGG | 0.591035 | 4_2:+45236546 | None:intergenic |
| AAACATCACATGTTCCTCCC+AGG | 0.591425 | 4_2:-45238284 | Msa0602020:CDS |
| AACCAGCAAATGTTGCAAGA+AGG | 0.594657 | 4_2:+45235867 | None:intergenic |
| TCTACTCCTCGAGTAAAGGA+AGG | 0.597280 | 4_2:-45237617 | Msa0602020:CDS |
| AATATAGTTCTCAAAGAAAG+CGG | 0.599599 | 4_2:+45236113 | None:intergenic |
| GAGTTTCAGGTATAGGACAC+CGG | 0.599623 | 4_2:-45238034 | Msa0602020:CDS |
| TCAAACCCTGAATCTACTCA+TGG | 0.600239 | 4_2:-45237859 | Msa0602020:CDS |
| GAAGAGGAAACTTCCCGAGT+AGG | 0.600451 | 4_2:+45237988 | None:intergenic |
| CATGGTGGAAATGGAAGTGT+TGG | 0.606041 | 4_2:-45237841 | Msa0602020:CDS |
| CTCAAAGAAAGCGGTTACCA+AGG | 0.612020 | 4_2:+45236122 | None:intergenic |
| TCAGCACATGAAAACCAGAA+GGG | 0.614755 | 4_2:-45235286 | Msa0602020:three_prime_UTR |
| AGTGTTCGAAATCGGAATGG+TGG | 0.615884 | 4_2:-45237221 | Msa0602020:CDS |
| CAGAGTGTTCGAAATCGGAA+TGG | 0.618284 | 4_2:-45237224 | Msa0602020:CDS |
| TTGGGAGTAGGAGTTGGAGT+AGG | 0.618886 | 4_2:+45238168 | None:intergenic |
| TTAGGTCAAAGTGAGAGTGA+AGG | 0.619789 | 4_2:-45235214 | Msa0602020:three_prime_UTR |
| AGCACTCCAAACTGAAGATG+TGG | 0.621691 | 4_2:+45235062 | None:intergenic |
| CCTCTACCGATGACACAAGC+AGG | 0.621790 | 4_2:-45235755 | Msa0602020:CDS |
| AAAGTCGAATACACCTACTC+GGG | 0.622124 | 4_2:-45238001 | Msa0602020:CDS |
| TGAAGATATACCTGAAGAAG+AGG | 0.622698 | 4_2:-45237438 | Msa0602020:CDS |
| TCTATGACATCATCAACCAT+GGG | 0.623591 | 4_2:-45236544 | Msa0602020:intron |
| AACCCTGAATCTACTCATGG+TGG | 0.624757 | 4_2:-45237856 | Msa0602020:CDS |
| CTGATCAGACGATCCAGATG+TGG | 0.626490 | 4_2:+45237069 | None:intergenic |
| GGAGAGCAGACCTAATACAC+AGG | 0.644216 | 4_2:+45236567 | None:intergenic |
| GCAAGGACAAAAGTATAAGG+AGG | 0.650576 | 4_2:-45237667 | Msa0602020:CDS |
| AACCACCAGAGCAAACTGGA+AGG | 0.657209 | 4_2:+45236167 | None:intergenic |
| TATACCAGTATCCTTTGGCG+GGG | 0.659834 | 4_2:+45237574 | None:intergenic |
| TCCGTAATAGAGTGACAGGA+AGG | 0.661488 | 4_2:+45237249 | None:intergenic |
| GCTTCATTAGAGCAACAACA+TGG | 0.664561 | 4_2:-45235779 | Msa0602020:CDS |
| GCTTAAAATCATACACTGAG+AGG | 0.668806 | 4_2:+45237814 | None:intergenic |
| TGGTTGGATTGGCCTGAACG+TGG | 0.672050 | 4_2:+45235707 | None:intergenic |
| AATGCCTGCCAACAACAGCA+AGG | 0.677333 | 4_2:-45237684 | Msa0602020:CDS |
| AGATATACCTGAAGAAGAGG+CGG | 0.681280 | 4_2:-45237435 | Msa0602020:CDS |
| CTGGTTGAATTATGTGAAGG+AGG | 0.682969 | 4_2:-45237398 | Msa0602020:CDS |
| AGAAAATAAACATGTCACTG+AGG | 0.695376 | 4_2:-45239421 | Msa0602020:CDS |
| TGTCTGGTTGAATTATGTGA+AGG | 0.716899 | 4_2:-45237401 | Msa0602020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTTTCCAAAAAAAT+TGG | - | chr4_2:45235522-45235541 | Msa0602020:intron | 10.0% |
| !!! | TTCATTTTAGATTAGTAATT+TGG | + | chr4_2:45235624-45235643 | None:intergenic | 15.0% |
| !!! | TCTTTGATTTTTAATTCATT+TGG | - | chr4_2:45235707-45235726 | Msa0602020:CDS | 15.0% |
| !!! | CTATTTCATTTTGTATTTAT+AGG | - | chr4_2:45236274-45236293 | Msa0602020:intron | 15.0% |
| !! | TATTAAATGGTTTAGTATAA+AGG | - | chr4_2:45237299-45237318 | Msa0602020:CDS | 15.0% |
| !! | ATTAAATGGTTTAGTATAAA+GGG | - | chr4_2:45237300-45237319 | Msa0602020:CDS | 15.0% |
| !! | ATTTAAACAAAATAATGTCA+GGG | + | chr4_2:45238384-45238403 | None:intergenic | 15.0% |
| !! | AATTTAAACAAAATAATGTC+AGG | + | chr4_2:45238385-45238404 | None:intergenic | 15.0% |
| !! | TCATAAAAAAATCAGAAATT+AGG | + | chr4_2:45238682-45238701 | None:intergenic | 15.0% |
| !!! | TTTTTATCTTCTCTTTGTTT+TGG | - | chr4_2:45235318-45235337 | Msa0602020:intron | 20.0% |
| !! | AAATTTGAAAACCAACAAAA+GGG | + | chr4_2:45235500-45235519 | None:intergenic | 20.0% |
| !! | AAAATTTGAAAACCAACAAA+AGG | + | chr4_2:45235501-45235520 | None:intergenic | 20.0% |
| !! | AGAAAACAGATAAAATTAGT+TGG | - | chr4_2:45235867-45235886 | Msa0602020:CDS | 20.0% |
| !!! | GTATCTTTTAATAGTCAATT+TGG | - | chr4_2:45236001-45236020 | Msa0602020:intron | 20.0% |
| !! | AAATTTAGTGATCAAAATGA+CGG | - | chr4_2:45236171-45236190 | Msa0602020:CDS | 20.0% |
| !!! | ATTATTTTCATGAGATAAGT+TGG | + | chr4_2:45236830-45236849 | None:intergenic | 20.0% |
| !! | AAATTGACAAGTTAAAATGA+TGG | + | chr4_2:45236860-45236879 | None:intergenic | 20.0% |
| !!! | TTTATTTTCAAATGCTTTCT+TGG | - | chr4_2:45237117-45237136 | Msa0602020:intron | 20.0% |
| !! | TTGTATGATAAAGATTGATT+TGG | - | chr4_2:45237489-45237508 | Msa0602020:intron | 20.0% |
| !! | AAAAGATCTTTATTGGATTT+GGG | + | chr4_2:45237630-45237649 | None:intergenic | 20.0% |
| !! | AAATCAGAAAAGATCTTTAT+TGG | + | chr4_2:45237637-45237656 | None:intergenic | 20.0% |
| !!! | TCTGATTTTCTCTTTTTTAT+AGG | - | chr4_2:45237976-45237995 | Msa0602020:CDS | 20.0% |
| !!! | TTTTTTATAGGTGACAAAAA+TGG | - | chr4_2:45237988-45238007 | Msa0602020:CDS | 20.0% |
| !!! | TTTTTATAGGTGACAAAAAT+GGG | - | chr4_2:45237989-45238008 | Msa0602020:CDS | 20.0% |
| !!! | TCCATTTTGAATTTATAATG+TGG | - | chr4_2:45238146-45238165 | Msa0602020:CDS | 20.0% |
| !! | TCCACATTATAAATTCAAAA+TGG | + | chr4_2:45238150-45238169 | None:intergenic | 20.0% |
| ! | ACCACTTAGTTAATAGTTAT+TGG | + | chr4_2:45235021-45235040 | None:intergenic | 25.0% |
| ! | TAACTATTAACTAAGTGGTA+TGG | - | chr4_2:45235022-45235041 | Msa0602020:three_prime_UTR | 25.0% |
| ! | TTTAAACTTCCAAGTTATTC+TGG | - | chr4_2:45235115-45235134 | Msa0602020:three_prime_UTR | 25.0% |
| ! | AAAACAAAACCAGAATAACT+TGG | + | chr4_2:45235127-45235146 | None:intergenic | 25.0% |
| !! | AATAAATAGTACCCTTTTGT+TGG | - | chr4_2:45235486-45235505 | Msa0602020:intron | 25.0% |
| ! | AACTGCATAATTCAAATTAG+AGG | + | chr4_2:45235568-45235587 | None:intergenic | 25.0% |
| !! | TACTATAGTTTTTGACATAC+TGG | + | chr4_2:45235809-45235828 | None:intergenic | 25.0% |
| ! | ACAATTGAACTGATTAATAG+TGG | + | chr4_2:45235893-45235912 | None:intergenic | 25.0% |
| !! | TTTTGATCACTAAATTTGTG+AGG | + | chr4_2:45236168-45236187 | None:intergenic | 25.0% |
| ! | ATAAGAAAATTCACTCTCTT+GGG | + | chr4_2:45236464-45236483 | None:intergenic | 25.0% |
| ! | GACAATGATCTTGATATTAA+AGG | + | chr4_2:45236665-45236684 | None:intergenic | 25.0% |
| ! | TTGGTAAAATATTTACTCCT+AGG | - | chr4_2:45236687-45236706 | Msa0602020:intron | 25.0% |
| !! | ACAAAGAATGTGCTATTAAA+TGG | - | chr4_2:45237286-45237305 | Msa0602020:CDS | 25.0% |
| ! | GAAAAGATCTTTATTGGATT+TGG | + | chr4_2:45237631-45237650 | None:intergenic | 25.0% |
| ! | AATTGAGCAGACAAATAAAA+TGG | + | chr4_2:45237738-45237757 | None:intergenic | 25.0% |
| ! | TTGCTCAAGAAAACAAAAAT+AGG | + | chr4_2:45237811-45237830 | None:intergenic | 25.0% |
| ! | AATATAGTTCTCAAAGAAAG+CGG | + | chr4_2:45238501-45238520 | None:intergenic | 25.0% |
| !!! | TTTTCTCAAATGAAAAGTAC+AGG | + | chr4_2:45238531-45238550 | None:intergenic | 25.0% |
| ! | TGCATAACTTATTGTGTATA+GGG | - | chr4_2:45239010-45239029 | Msa0602020:intron | 25.0% |
| !! | ACTTTTATCACACATCTATA+TGG | - | chr4_2:45239044-45239063 | Msa0602020:intron | 25.0% |
| !! | CTTTTATCACACATCTATAT+GGG | - | chr4_2:45239045-45239064 | Msa0602020:intron | 25.0% |
| !! | TTGTACTGATCTATTAAGTA+CGG | - | chr4_2:45239127-45239146 | Msa0602020:intron | 25.0% |
| !!! | TTTTTGGCTTTCTTTTTTGT+AGG | - | chr4_2:45239348-45239367 | Msa0602020:intron | 25.0% |
| ! | AAGTAACTACATATTGCATT+TGG | + | chr4_2:45239477-45239496 | None:intergenic | 25.0% |
| !! | ATGTAGTTACTTTACTTACA+TGG | - | chr4_2:45239485-45239504 | Msa0602020:five_prime_UTR | 25.0% |
| !! | TGTATTTCCTTCTATTTTCT+AGG | - | chr4_2:45239511-45239530 | Msa0602020:five_prime_UTR | 25.0% |
| GCCAATAACTATTAACTAAG+TGG | - | chr4_2:45235017-45235036 | Msa0602020:three_prime_UTR | 30.0% | |
| AGAAAATAAACATGTCACTG+AGG | - | chr4_2:45235190-45235209 | Msa0602020:three_prime_UTR | 30.0% | |
| AGTGATGTTTCTTCATACTA+AGG | - | chr4_2:45235352-45235371 | Msa0602020:intron | 30.0% | |
| CTTCATACTAAGGTTCTTTA+AGG | - | chr4_2:45235362-45235381 | Msa0602020:intron | 30.0% | |
| !!! | AGATCAAGCTCCAATTTTTT+TGG | + | chr4_2:45235535-45235554 | None:intergenic | 30.0% |
| !! | CTAGCTGATATTTGTTATCA+AGG | - | chr4_2:45235650-45235669 | Msa0602020:exon | 30.0% |
| !! | TATTTGTTATCAAGGATCAG+TGG | - | chr4_2:45235658-45235677 | Msa0602020:exon | 30.0% |
| CAAAAACTATAGTACTTTGC+CGG | - | chr4_2:45235815-45235834 | Msa0602020:CDS | 30.0% | |
| AGTTCAATTGTACTGTAGTT+TGG | - | chr4_2:45235902-45235921 | Msa0602020:intron | 30.0% | |
| !! | AGAAGATTTTGTTTCTTCCT+GGG | + | chr4_2:45236347-45236366 | None:intergenic | 30.0% |
| CATAAGAAAATTCACTCTCT+TGG | + | chr4_2:45236465-45236484 | None:intergenic | 30.0% | |
| ! | TTTTCTTATGACTTCTCGTT+CGG | - | chr4_2:45236475-45236494 | Msa0602020:intron | 30.0% |
| !! | CTTATAGATGATTTGCCTTT+TGG | + | chr4_2:45236539-45236558 | None:intergenic | 30.0% |
| ! | CTATACCTGAAACTCAATTT+TGG | + | chr4_2:45236572-45236591 | None:intergenic | 30.0% |
| ! | CAAAATTGAGTTTCAGGTAT+AGG | - | chr4_2:45236570-45236589 | Msa0602020:CDS | 30.0% |
| ATATCAAGATCATTGTCACT+TGG | - | chr4_2:45236668-45236687 | Msa0602020:intron | 30.0% | |
| ! | TTTTGCAGAAAAAAGAGACT+CGG | - | chr4_2:45236881-45236900 | Msa0602020:CDS | 30.0% |
| !! | TTCATTTTTCATGAATGCAG+AGG | + | chr4_2:45237092-45237111 | None:intergenic | 30.0% |
| ! | ATTTGTCTGCTCAATTTTGT+AGG | - | chr4_2:45237742-45237761 | Msa0602020:intron | 30.0% |
| ! | TTTGTCTGCTCAATTTTGTA+GGG | - | chr4_2:45237743-45237762 | Msa0602020:intron | 30.0% |
| ! | GTATAATCACATGTATCGAT+TGG | + | chr4_2:45238293-45238312 | None:intergenic | 30.0% |
| CTGATTCATTAGAATGAACT+GGG | + | chr4_2:45238598-45238617 | None:intergenic | 30.0% | |
| ! | ACTGATTCATTAGAATGAAC+TGG | + | chr4_2:45238599-45238618 | None:intergenic | 30.0% |
| TTTGCACTATAGATTGATTG+TGG | + | chr4_2:45238927-45238946 | None:intergenic | 30.0% | |
| CTGCATAACTTATTGTGTAT+AGG | - | chr4_2:45239009-45239028 | Msa0602020:intron | 30.0% | |
| TAACTTATTGTGTATAGGGT+AGG | - | chr4_2:45239014-45239033 | Msa0602020:intron | 30.0% | |
| AACTTATTGTGTATAGGGTA+GGG | - | chr4_2:45239015-45239034 | Msa0602020:intron | 30.0% | |
| TCTCAAATTATTTGCAGTGT+TGG | + | chr4_2:45239182-45239201 | None:intergenic | 30.0% | |
| ! | TGACACAATGATTTTGCTTT+AGG | - | chr4_2:45239379-45239398 | Msa0602020:CDS | 30.0% |
| ! | AGATGTGGAAAATCTTTTCT+AGG | + | chr4_2:45239537-45239556 | None:intergenic | 30.0% |
| !! | ATAAGGATTGGTTTGAGTGT+TGG | + | chr4_2:45235430-45235449 | None:intergenic | 35.0% |
| AACACTCAAACCAATCCTTA+TGG | - | chr4_2:45235429-45235448 | Msa0602020:intron | 35.0% | |
| !!! | GTGGTGTAGTTTGCTTTTTT+GGG | - | chr4_2:45235451-45235470 | Msa0602020:intron | 35.0% |
| TAGTCCTTGAATGTATGAGA+CGG | - | chr4_2:45235949-45235968 | Msa0602020:intron | 35.0% | |
| ATAACCGTCTCATACATTCA+AGG | + | chr4_2:45235956-45235975 | None:intergenic | 35.0% | |
| GTGTCTTTCATCAGTTAGTT+TGG | - | chr4_2:45236033-45236052 | Msa0602020:CDS | 35.0% | |
| TGATCACTAAATTTGTGAGG+TGG | + | chr4_2:45236165-45236184 | None:intergenic | 35.0% | |
| GATCAAAATGACGGTTTACT+CGG | - | chr4_2:45236180-45236199 | Msa0602020:CDS | 35.0% | |
| ! | ATAGGATGATGATGACTCAA+TGG | - | chr4_2:45236292-45236311 | Msa0602020:intron | 35.0% |
| ! | TAGGATGATGATGACTCAAT+GGG | - | chr4_2:45236293-45236312 | Msa0602020:intron | 35.0% |
| !! | GAGAAGATTTTGTTTCTTCC+TGG | + | chr4_2:45236348-45236367 | None:intergenic | 35.0% |
| ! | GTGTTCTTGATGGTATTTCT+AGG | + | chr4_2:45236370-45236389 | None:intergenic | 35.0% |
| GATCCAGGAGAATTATTTGT+CGG | + | chr4_2:45236509-45236528 | None:intergenic | 35.0% | |
| ! | TTCGACTTTTCAATATCTGC+CGG | + | chr4_2:45236599-45236618 | None:intergenic | 35.0% |
| AAAAGTCGAATACACCTACT+CGG | - | chr4_2:45236609-45236628 | Msa0602020:CDS | 35.0% | |
| ! | GATGAAGTTCTTTTCATCCT+AGG | + | chr4_2:45236707-45236726 | None:intergenic | 35.0% |
| AGAACTTCATCATTGCCATT+AGG | - | chr4_2:45236716-45236735 | Msa0602020:intron | 35.0% | |
| TCATTGCCATTAGGAGAAAT+TGG | - | chr4_2:45236725-45236744 | Msa0602020:intron | 35.0% | |
| GAATGTCCAATTTCTCCTAA+TGG | + | chr4_2:45236734-45236753 | None:intergenic | 35.0% | |
| GCTTAAAATCATACACTGAG+AGG | + | chr4_2:45236800-45236819 | None:intergenic | 35.0% | |
| ! | ACAGCAAGGACAAAAGTATA+AGG | - | chr4_2:45236941-45236960 | Msa0602020:intron | 35.0% |
| TTGACTATACCAGTATCCTT+TGG | + | chr4_2:45237045-45237064 | None:intergenic | 35.0% | |
| ! | GAAGATGATGATGATGATGA+TGG | - | chr4_2:45237150-45237169 | Msa0602020:intron | 35.0% |
| TGAAGATATACCTGAAGAAG+AGG | - | chr4_2:45237173-45237192 | Msa0602020:intron | 35.0% | |
| TGTCTGGTTGAATTATGTGA+AGG | - | chr4_2:45237210-45237229 | Msa0602020:CDS | 35.0% | |
| AAGTTGGAATGTAGCTGTAA+AGG | - | chr4_2:45237246-45237265 | Msa0602020:CDS | 35.0% | |
| CATGCAAATATGCTTCGATT+AGG | - | chr4_2:45237674-45237693 | Msa0602020:CDS | 35.0% | |
| ! | TTGTTTTCTTGAGCAACTGT+TGG | - | chr4_2:45237815-45237834 | Msa0602020:intron | 35.0% |
| GAGAAAATCAGAAGCTACTT+TGG | + | chr4_2:45237968-45237987 | None:intergenic | 35.0% | |
| ACAGGAAAATGGAAGAGATA+TGG | + | chr4_2:45238029-45238048 | None:intergenic | 35.0% | |
| ! | CTTCCATTTTCCTGTGTATT+AGG | - | chr4_2:45238034-45238053 | Msa0602020:CDS | 35.0% |
| AGACCTAATACACAGGAAAA+TGG | + | chr4_2:45238040-45238059 | None:intergenic | 35.0% | |
| TCTATGACATCATCAACCAT+GGG | - | chr4_2:45238067-45238086 | Msa0602020:CDS | 35.0% | |
| CATGATATACAGAGTTGCAA+TGG | + | chr4_2:45238213-45238232 | None:intergenic | 35.0% | |
| CATTGCAACTCTGTATATCA+TGG | - | chr4_2:45238211-45238230 | Msa0602020:CDS | 35.0% | |
| ACAAAATAATGTCAGGGTTG+TGG | + | chr4_2:45238378-45238397 | None:intergenic | 35.0% | |
| TGCTAATGCTTCTCTATGTA+GGG | + | chr4_2:45238658-45238677 | None:intergenic | 35.0% | |
| ATGCTAATGCTTCTCTATGT+AGG | + | chr4_2:45238659-45238678 | None:intergenic | 35.0% | |
| ! | TTATGATATCTGTCACTTGC+AGG | - | chr4_2:45238696-45238715 | Msa0602020:intron | 35.0% |
| ! | TGCTTGTTGAGTTCTTTAGA+TGG | - | chr4_2:45238794-45238813 | Msa0602020:intron | 35.0% |
| TTGAGTTCTTTAGATGGAGA+AGG | - | chr4_2:45238800-45238819 | Msa0602020:intron | 35.0% | |
| TAGATTGATTGTGGTTGGAT+TGG | + | chr4_2:45238918-45238937 | None:intergenic | 35.0% | |
| CACTATAGATTGATTGTGGT+TGG | + | chr4_2:45238923-45238942 | None:intergenic | 35.0% | |
| ATTAAGTACGGATACAGACA+CGG | - | chr4_2:45239139-45239158 | Msa0602020:intron | 35.0% | |
| ! | ATGAAAACCAGAAGGGTTTT+TGG | - | chr4_2:45239332-45239351 | Msa0602020:intron | 35.0% |
| !!! | GCTTTCTTTTTTGTAGGCTT+GGG | - | chr4_2:45239354-45239373 | Msa0602020:CDS | 35.0% |
| TTCTAGGCCTAGAAAATAGA+AGG | + | chr4_2:45239521-45239540 | None:intergenic | 35.0% | |
| ! | GATTTTCCACATCTTCAGTT+TGG | - | chr4_2:45239543-45239562 | Msa0602020:five_prime_UTR | 35.0% |
| CTAAGTGGTATGGCTATCAT+TGG | - | chr4_2:45235032-45235051 | Msa0602020:three_prime_UTR | 40.0% | |
| TTCTCTTCCTGTTGTTCACA+AGG | - | chr4_2:45235259-45235278 | Msa0602020:three_prime_UTR | 40.0% | |
| ! | CAAAGTACCTTGTGAACAAC+AGG | + | chr4_2:45235269-45235288 | None:intergenic | 40.0% |
| ACTCAAACCAATCCTTATGG+TGG | - | chr4_2:45235432-45235451 | Msa0602020:intron | 40.0% | |
| AACTACACCACCATAAGGAT+TGG | + | chr4_2:45235442-45235461 | None:intergenic | 40.0% | |
| AAGCAAACTACACCACCATA+AGG | + | chr4_2:45235447-45235466 | None:intergenic | 40.0% | |
| !!! | GGTGGTGTAGTTTGCTTTTT+TGG | - | chr4_2:45235450-45235469 | Msa0602020:intron | 40.0% |
| ATTCTCCCATTCATCGATAC+CGG | + | chr4_2:45235837-45235856 | None:intergenic | 40.0% | |
| CGTGTCTTCTGTTAGTTACA+TGG | - | chr4_2:45236064-45236083 | Msa0602020:CDS | 40.0% | |
| CAAGTGAAGTTACGAACAGA+AGG | - | chr4_2:45236087-45236106 | Msa0602020:CDS | 40.0% | |
| !! | AGATTTTGTTTCTTCCTGGG+AGG | + | chr4_2:45236344-45236363 | None:intergenic | 40.0% |
| CACTCTTCTTGTGTTCTTGA+TGG | + | chr4_2:45236380-45236399 | None:intergenic | 40.0% | |
| AAATTCACTCTCTTGGGAGT+AGG | + | chr4_2:45236458-45236477 | None:intergenic | 40.0% | |
| TGCTGCCAAAATTGAGTTTC+AGG | - | chr4_2:45236564-45236583 | Msa0602020:CDS | 40.0% | |
| AAAGTCGAATACACCTACTC+GGG | - | chr4_2:45236610-45236629 | Msa0602020:CDS | 40.0% | |
| TCAAACCCTGAATCTACTCA+TGG | - | chr4_2:45236752-45236771 | Msa0602020:intron | 40.0% | |
| TTCCACCATGAGTAGATTCA+GGG | + | chr4_2:45236760-45236779 | None:intergenic | 40.0% | |
| TTTCCACCATGAGTAGATTC+AGG | + | chr4_2:45236761-45236780 | None:intergenic | 40.0% | |
| ! | GAATCTACTCATGGTGGAAA+TGG | - | chr4_2:45236761-45236780 | Msa0602020:intron | 40.0% |
| !!! | ACTTTTGTCCTTGCTGTTGT+TGG | + | chr4_2:45236938-45236957 | None:intergenic | 40.0% |
| ! | GCAAGGACAAAAGTATAAGG+AGG | - | chr4_2:45236944-45236963 | Msa0602020:intron | 40.0% |
| ! | GGACAAAAGTATAAGGAGGA+TGG | - | chr4_2:45236948-45236967 | Msa0602020:intron | 40.0% |
| TCATTTCCTTCCTTTACTCG+AGG | + | chr4_2:45237003-45237022 | None:intergenic | 40.0% | |
| ACTATACCAGTATCCTTTGG+CGG | + | chr4_2:45237042-45237061 | None:intergenic | 40.0% | |
| AGATATACCTGAAGAAGAGG+CGG | - | chr4_2:45237176-45237195 | Msa0602020:intron | 40.0% | |
| CTGGTTGAATTATGTGAAGG+AGG | - | chr4_2:45237213-45237232 | Msa0602020:CDS | 40.0% | |
| ACAGCTACATTCCAACTTGA+AGG | + | chr4_2:45237244-45237263 | None:intergenic | 40.0% | |
| GACATGTGATGTCTGCAAAA+AGG | - | chr4_2:45237329-45237348 | Msa0602020:CDS | 40.0% | |
| ATGTGATGTCTGCAAAAAGG+AGG | - | chr4_2:45237332-45237351 | Msa0602020:CDS | 40.0% | |
| ACCTTCCTGTCACTCTATTA+CGG | - | chr4_2:45237361-45237380 | Msa0602020:CDS | 40.0% | |
| ! | GTCTGATCAGACTTCAAGTT+CGG | - | chr4_2:45237555-45237574 | Msa0602020:intron | 40.0% |
| TTAGCCATATCTGGATCAGA+CGG | + | chr4_2:45237597-45237616 | None:intergenic | 40.0% | |
| TCTGATCCAGATATGGCTAA+CGG | - | chr4_2:45237597-45237616 | Msa0602020:CDS | 40.0% | |
| TGCATGACTCACTCATTCAT+TGG | + | chr4_2:45237660-45237679 | None:intergenic | 40.0% | |
| ! | CTGCTCAATTTTGTAGGGTT+TGG | - | chr4_2:45237748-45237767 | Msa0602020:intron | 40.0% |
| ! | TCAATTTTGTAGGGTTTGGC+AGG | - | chr4_2:45237752-45237771 | Msa0602020:intron | 40.0% |
| ATGCTAACAATGACAAGCAC+CGG | + | chr4_2:45237783-45237802 | None:intergenic | 40.0% | |
| GCTTGTCATTGTTAGCATGT+TGG | - | chr4_2:45237785-45237804 | Msa0602020:intron | 40.0% | |
| TAGGTGACAAAAATGGGAAC+TGG | - | chr4_2:45237995-45238014 | Msa0602020:CDS | 40.0% | |
| !! | CATGGTTGATGATGTCATAG+AGG | + | chr4_2:45238068-45238087 | None:intergenic | 40.0% |
| CTCTATGACATCATCAACCA+TGG | - | chr4_2:45238066-45238085 | Msa0602020:CDS | 40.0% | |
| ! | CGCGCATATATTTTACTCCT+TGG | - | chr4_2:45238472-45238491 | Msa0602020:intron | 40.0% |
| GGGATTCGTCGTATTGAATT+AGG | + | chr4_2:45238578-45238597 | None:intergenic | 40.0% | |
| ATCCTTCTTGCAACATTTGC+TGG | - | chr4_2:45238742-45238761 | Msa0602020:intron | 40.0% | |
| AACCAGCAAATGTTGCAAGA+AGG | + | chr4_2:45238747-45238766 | None:intergenic | 40.0% | |
| !!! | CTTGCAACATTTGCTGGTTT+TGG | - | chr4_2:45238748-45238767 | Msa0602020:intron | 40.0% |
| !! | GGTTTTGGTGTAGTAATGAG+TGG | - | chr4_2:45238763-45238782 | Msa0602020:intron | 40.0% |
| TCTTTAGATGGAGAAGGAGA+TGG | - | chr4_2:45238806-45238825 | Msa0602020:intron | 40.0% | |
| GCTTCATTAGAGCAACAACA+TGG | - | chr4_2:45238832-45238851 | Msa0602020:intron | 40.0% | |
| GGACTTCATTGTACAGCTTA+TGG | - | chr4_2:45239066-45239085 | Msa0602020:intron | 40.0% | |
| GGATATAGCTTCTCTTGCTA+TGG | - | chr4_2:45239087-45239106 | Msa0602020:intron | 40.0% | |
| ATTATGTGTCAGTGTCGTGT+TGG | - | chr4_2:45239222-45239241 | Msa0602020:intron | 40.0% | |
| TATGAAGCACAAACACTCCT+CGG | + | chr4_2:45239289-45239308 | None:intergenic | 40.0% | |
| !! | TTGTGCTTCATAGGTACTGA+TGG | - | chr4_2:45239297-45239316 | Msa0602020:intron | 40.0% |
| TTCAGCACATGAAAACCAGA+AGG | - | chr4_2:45239324-45239343 | Msa0602020:intron | 40.0% | |
| TCAGCACATGAAAACCAGAA+GGG | - | chr4_2:45239325-45239344 | Msa0602020:intron | 40.0% | |
| AAGAAAGCCAAAAACCCTTC+TGG | + | chr4_2:45239342-45239361 | None:intergenic | 40.0% | |
| !!! | GGCTTTCTTTTTTGTAGGCT+TGG | - | chr4_2:45239353-45239372 | Msa0602020:CDS | 40.0% |
| TTAGGTCAAAGTGAGAGTGA+AGG | - | chr4_2:45239397-45239416 | Msa0602020:CDS | 40.0% | |
| TAGGTCAAAGTGAGAGTGAA+GGG | - | chr4_2:45239398-45239417 | Msa0602020:CDS | 40.0% | |
| !! | AGGATTGGTTTGAGTGTTGG+TGG | + | chr4_2:45235427-45235446 | None:intergenic | 45.0% |
| !! | ACTTTGCCGGTATCGATGAA+TGG | - | chr4_2:45235828-45235847 | Msa0602020:CDS | 45.0% |
| !! | CTTTGCCGGTATCGATGAAT+GGG | - | chr4_2:45235829-45235848 | Msa0602020:CDS | 45.0% |
| ! | TTACGAACAGAAGGCACACT+CGG | - | chr4_2:45236096-45236115 | Msa0602020:CDS | 45.0% |
| AAACATCACATGTTCCTCCC+AGG | - | chr4_2:45236327-45236346 | Msa0602020:intron | 45.0% | |
| GCTCCGACAAATAATTCTCC+TGG | - | chr4_2:45236503-45236522 | Msa0602020:intron | 45.0% | |
| ! | GAGTTTCAGGTATAGGACAC+CGG | - | chr4_2:45236577-45236596 | Msa0602020:CDS | 45.0% |
| AACCCTGAATCTACTCATGG+TGG | - | chr4_2:45236755-45236774 | Msa0602020:intron | 45.0% | |
| ! | CATGGTGGAAATGGAAGTGT+TGG | - | chr4_2:45236770-45236789 | Msa0602020:intron | 45.0% |
| TCCTTCTACTCCTCGAGTAA+AGG | - | chr4_2:45236990-45237009 | Msa0602020:intron | 45.0% | |
| TCCTTTACTCGAGGAGTAGA+AGG | + | chr4_2:45236994-45237013 | None:intergenic | 45.0% | |
| TCTACTCCTCGAGTAAAGGA+AGG | - | chr4_2:45236994-45237013 | Msa0602020:intron | 45.0% | |
| TATACCAGTATCCTTTGGCG+GGG | + | chr4_2:45237040-45237059 | None:intergenic | 45.0% | |
| CTATACCAGTATCCTTTGGC+GGG | + | chr4_2:45237041-45237060 | None:intergenic | 45.0% | |
| ! | CTGTAAAGGCGAACTTGCTT+TGG | - | chr4_2:45237260-45237279 | Msa0602020:CDS | 45.0% |
| TCCGTAATAGAGTGACAGGA+AGG | + | chr4_2:45237365-45237384 | None:intergenic | 45.0% | |
| TGGATCCGTAATAGAGTGAC+AGG | + | chr4_2:45237369-45237388 | None:intergenic | 45.0% | |
| ! | GGATCCAGAGTGTTCGAAAT+CGG | - | chr4_2:45237382-45237401 | Msa0602020:CDS | 45.0% |
| CATTCCGATTTCGAACACTC+TGG | + | chr4_2:45237389-45237408 | None:intergenic | 45.0% | |
| ! | CAGAGTGTTCGAAATCGGAA+TGG | - | chr4_2:45237387-45237406 | Msa0602020:CDS | 45.0% |
| AGTGTTCGAAATCGGAATGG+TGG | - | chr4_2:45237390-45237409 | Msa0602020:CDS | 45.0% | |
| GCTCAGCTTGAAGACGTAAA+CGG | - | chr4_2:45237423-45237442 | Msa0602020:CDS | 45.0% | |
| CTCAGCTTGAAGACGTAAAC+GGG | - | chr4_2:45237424-45237443 | Msa0602020:CDS | 45.0% | |
| TTGAAGACGTAAACGGGTAC+AGG | - | chr4_2:45237430-45237449 | Msa0602020:CDS | 45.0% | |
| TAGACCGTCTGATCCAGATA+TGG | - | chr4_2:45237590-45237609 | Msa0602020:CDS | 45.0% | |
| TGACATCATCAACCATGGGT+AGG | - | chr4_2:45238071-45238090 | Msa0602020:CDS | 45.0% | |
| ATGTGTTGTGAACCTACCCA+TGG | + | chr4_2:45238086-45238105 | None:intergenic | 45.0% | |
| GTGGATCAGTCAAAGTCAGT+TGG | - | chr4_2:45238165-45238184 | Msa0602020:CDS | 45.0% | |
| ATTTGTGTCCAGTGATGAGC+AGG | - | chr4_2:45238402-45238421 | Msa0602020:intron | 45.0% | |
| CATATGAACCTGCTCATCAC+TGG | + | chr4_2:45238413-45238432 | None:intergenic | 45.0% | |
| CAGTGATGAGCAGGTTCATA+TGG | - | chr4_2:45238411-45238430 | Msa0602020:intron | 45.0% | |
| CTCAAAGAAAGCGGTTACCA+AGG | + | chr4_2:45238492-45238511 | None:intergenic | 45.0% | |
| GCTTCTCATGACAAAGCTAG+TGG | - | chr4_2:45238986-45239005 | Msa0602020:intron | 45.0% | |
| !! | GAGGAGTGTTTGTGCTTCAT+AGG | - | chr4_2:45239288-45239307 | Msa0602020:intron | 45.0% |
| AAAGTGAGAGTGAAGGGTTG+AGG | - | chr4_2:45239404-45239423 | Msa0602020:CDS | 45.0% | |
| AGCACTCCAAACTGAAGATG+TGG | + | chr4_2:45239552-45239571 | None:intergenic | 45.0% | |
| !! | TCAGTTTGGAGTGCTGCTTA+TGG | - | chr4_2:45239557-45239576 | Msa0602020:five_prime_UTR | 45.0% |
| !! | GGAGTAGGACTTGGTGTCAT+TGG | + | chr4_2:45236431-45236450 | None:intergenic | 50.0% |
| GTAGGAGTTGGAGTAGGACT+TGG | + | chr4_2:45236440-45236459 | None:intergenic | 50.0% | |
| TTGGGAGTAGGAGTTGGAGT+AGG | + | chr4_2:45236446-45236465 | None:intergenic | 50.0% | |
| ACTCTCTTGGGAGTAGGAGT+TGG | + | chr4_2:45236452-45236471 | None:intergenic | 50.0% | |
| !!! | CCTTTTGGTGTTGCAGATCC+AGG | + | chr4_2:45236524-45236543 | None:intergenic | 50.0% |
| CCTGGATCTGCAACACCAAA+AGG | - | chr4_2:45236521-45236540 | Msa0602020:intron | 50.0% | |
| GAAGAGGAAACTTCCCGAGT+AGG | + | chr4_2:45236626-45236645 | None:intergenic | 50.0% | |
| ! | CTTTTCTCGAGTGCTCGAAG+AGG | + | chr4_2:45236642-45236661 | None:intergenic | 50.0% |
| !! | GGTGGAAATGGAAGTGTTGG+CGG | - | chr4_2:45236773-45236792 | Msa0602020:intron | 50.0% |
| AATGCCTGCCAACAACAGCA+AGG | - | chr4_2:45236927-45236946 | Msa0602020:intron | 50.0% | |
| !! | TTGTCCTTGCTGTTGTTGGC+AGG | + | chr4_2:45236934-45236953 | None:intergenic | 50.0% |
| CTGATCAGACGATCCAGATG+TGG | + | chr4_2:45237545-45237564 | None:intergenic | 50.0% | |
| ! | TGTGTGCCGTTAGCCATATC+TGG | + | chr4_2:45237606-45237625 | None:intergenic | 50.0% |
| TGCTTCGATTAGGAGCTTCG+TGG | - | chr4_2:45237684-45237703 | Msa0602020:CDS | 50.0% | |
| TAGGGTTTGGCAGGAAGTTC+CGG | - | chr4_2:45237761-45237780 | Msa0602020:intron | 50.0% | |
| GGAGAGCAGACCTAATACAC+AGG | + | chr4_2:45238047-45238066 | None:intergenic | 50.0% | |
| ! | TGCATCCTTCCAGTTTGCTC+TGG | - | chr4_2:45238439-45238458 | Msa0602020:intron | 50.0% |
| ! | ATCCTTCCAGTTTGCTCTGG+TGG | - | chr4_2:45238442-45238461 | Msa0602020:intron | 50.0% |
| AACCACCAGAGCAAACTGGA+AGG | + | chr4_2:45238447-45238466 | None:intergenic | 50.0% | |
| AGAGAACCACCAGAGCAAAC+TGG | + | chr4_2:45238451-45238470 | None:intergenic | 50.0% | |
| CTGCTTGTGTCATCGGTAGA+GGG | + | chr4_2:45238858-45238877 | None:intergenic | 50.0% | |
| TGCTGTCCTGCTTGTGTCAT+CGG | + | chr4_2:45238865-45238884 | None:intergenic | 50.0% | |
| ACTGTAACAACGCCACGTTC+AGG | - | chr4_2:45238892-45238911 | Msa0602020:intron | 50.0% | |
| ATGTGACACGTGTCTGACAC+TGG | - | chr4_2:45239251-45239270 | Msa0602020:intron | 50.0% | |
| TGTGACACGTGTCTGACACT+GGG | - | chr4_2:45239252-45239271 | Msa0602020:intron | 50.0% | |
| !! | GTTTGGAGTGCTGCTTATGG+AGG | - | chr4_2:45239560-45239579 | Msa0602020:five_prime_UTR | 50.0% |
| CTACACACCGCCTCTTCTTC+AGG | + | chr4_2:45237186-45237205 | None:intergenic | 55.0% | |
| GGCGGTGTGTAGAATCTGTC+TGG | - | chr4_2:45237194-45237213 | Msa0602020:intron | 55.0% | |
| AGGAGGCGAGACCTTCAAGT+TGG | - | chr4_2:45237230-45237249 | Msa0602020:CDS | 55.0% | |
| CCTGCTTGTGTCATCGGTAG+AGG | + | chr4_2:45238859-45238878 | None:intergenic | 55.0% | |
| CCTCTACCGATGACACAAGC+AGG | - | chr4_2:45238856-45238875 | Msa0602020:intron | 55.0% | |
| CGTGGCGTTGTTACAGTTCG+AGG | + | chr4_2:45238889-45238908 | None:intergenic | 55.0% | |
| !! | TGGTTGGATTGGCCTGAACG+TGG | + | chr4_2:45238907-45238926 | None:intergenic | 55.0% |
| ACTGGGACACGTCTAATCCG+AGG | - | chr4_2:45239269-45239288 | Msa0602020:intron | 55.0% | |
| GTTGAAGACGTCCCCGCCAA+AGG | - | chr4_2:45237026-45237045 | Msa0602020:intron | 60.0% | |
| ACGTCCCCGCCAAAGGATAC+TGG | - | chr4_2:45237033-45237052 | Msa0602020:intron | 60.0% | |
| TGCACGCAGTCAGCCACATC+TGG | - | chr4_2:45237529-45237548 | Msa0602020:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 45235017 | 45239616 | 45235017 | ID=Msa0602020;Name=Msa0602020 |
| chr4_2 | mRNA | 45235017 | 45239616 | 45235017 | ID=Msa0602020-mRNA-1;Parent=Msa0602020;Name=Msa0602020-mRNA-1;_AED=0.15;_eAED=0.15;_QI=162|0.66|0.6|1|0.88|0.8|10|366|604 |
| chr4_2 | exon | 45235017 | 45235323 | 45235017 | ID=Msa0602020-mRNA-1:exon:10146;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45235602 | 45235915 | 45235602 | ID=Msa0602020-mRNA-1:exon:10145;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45236017 | 45236219 | 45236017 | ID=Msa0602020-mRNA-1:exon:10144;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45236545 | 45236635 | 45236545 | ID=Msa0602020-mRNA-1:exon:10143;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45236797 | 45236937 | 45236797 | ID=Msa0602020-mRNA-1:exon:10142;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45237057 | 45237110 | 45237057 | ID=Msa0602020-mRNA-1:exon:10141;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45237196 | 45237488 | 45237196 | ID=Msa0602020-mRNA-1:exon:10140;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45237579 | 45237744 | 45237579 | ID=Msa0602020-mRNA-1:exon:10139;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45237828 | 45238337 | 45237828 | ID=Msa0602020-mRNA-1:exon:10138;Parent=Msa0602020-mRNA-1 |
| chr4_2 | exon | 45239353 | 45239616 | 45239353 | ID=Msa0602020-mRNA-1:exon:10137;Parent=Msa0602020-mRNA-1 |
| chr4_2 | five_prime_UTR | 45239455 | 45239616 | 45239455 | ID=Msa0602020-mRNA-1:five_prime_utr;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45239353 | 45239454 | 45239353 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45237828 | 45238337 | 45237828 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45237579 | 45237744 | 45237579 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45237196 | 45237488 | 45237196 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45237057 | 45237110 | 45237057 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45236797 | 45236937 | 45236797 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45236545 | 45236635 | 45236545 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45236017 | 45236219 | 45236017 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | CDS | 45235661 | 45235915 | 45235661 | ID=Msa0602020-mRNA-1:cds;Parent=Msa0602020-mRNA-1 |
| chr4_2 | three_prime_UTR | 45235602 | 45235660 | 45235602 | ID=Msa0602020-mRNA-1:three_prime_utr;Parent=Msa0602020-mRNA-1 |
| chr4_2 | three_prime_UTR | 45235017 | 45235323 | 45235017 | ID=Msa0602020-mRNA-1:three_prime_utr;Parent=Msa0602020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
