Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547290 | XP_024637349.1 | 83.250 | 603 | 20 | 6 | 1 | 602 | 1 | 523 | 0.0 | 954 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547290 | A0A396I7N5 | 83.250 | 603 | 20 | 6 | 1 | 602 | 1 | 523 | 0.0 | 954 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0547290 | Msa0602020 | 0.896668 | 2.957947e-76 | -8.615850e-47 |
| Msa0547290 | Msa0643120 | 0.813333 | 2.698729e-51 | -8.615850e-47 |
| Msa0547290 | Msa0682820 | 0.828432 | 9.021408e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547290 | MtrunA17_Chr4g0029221 | 83.250 | 603 | 20 | 6 | 1 | 602 | 1 | 523 | 0.0 | 954 |
| Msa0547290 | MtrunA17_Chr2g0326551 | 52.080 | 601 | 171 | 15 | 14 | 602 | 7 | 502 | 0.0 | 523 |
| Msa0547290 | MtrunA17_Chr1g0181371 | 43.889 | 540 | 195 | 14 | 33 | 563 | 26 | 466 | 1.55e-131 | 394 |
| Msa0547290 | MtrunA17_Chr3g0120281 | 41.224 | 490 | 185 | 13 | 87 | 556 | 37 | 443 | 7.38e-102 | 317 |
| Msa0547290 | MtrunA17_Chr2g0286611 | 31.180 | 449 | 197 | 12 | 115 | 552 | 58 | 405 | 1.12e-54 | 191 |
| Msa0547290 | MtrunA17_Chr7g0246271 | 35.122 | 205 | 84 | 3 | 275 | 478 | 45 | 201 | 2.09e-27 | 109 |
| Msa0547290 | MtrunA17_Chr7g0246251 | 30.047 | 213 | 75 | 4 | 293 | 478 | 1 | 166 | 2.37e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547290 | AT5G60580.1 | 51.091 | 550 | 163 | 14 | 1 | 548 | 1 | 446 | 1.69e-154 | 453 |
| Msa0547290 | AT5G60580.3 | 51.091 | 550 | 163 | 14 | 1 | 548 | 1 | 446 | 1.69e-154 | 453 |
| Msa0547290 | AT5G60580.4 | 50.449 | 557 | 163 | 15 | 1 | 548 | 1 | 453 | 6.56e-152 | 447 |
| Msa0547290 | AT5G60580.2 | 50.449 | 557 | 163 | 15 | 1 | 548 | 1 | 453 | 6.56e-152 | 447 |
| Msa0547290 | AT3G09760.1 | 39.369 | 602 | 230 | 17 | 4 | 589 | 9 | 491 | 1.85e-114 | 350 |
| Msa0547290 | AT5G03180.2 | 39.313 | 524 | 210 | 17 | 37 | 553 | 29 | 451 | 4.99e-98 | 307 |
| Msa0547290 | AT5G03180.1 | 38.432 | 523 | 212 | 16 | 37 | 553 | 29 | 447 | 7.13e-97 | 304 |
| Msa0547290 | AT5G03180.4 | 39.216 | 510 | 202 | 17 | 51 | 553 | 8 | 416 | 1.10e-96 | 302 |
| Msa0547290 | AT5G03180.3 | 39.551 | 445 | 199 | 15 | 37 | 474 | 29 | 410 | 9.16e-78 | 253 |
| Msa0547290 | AT5G03180.5 | 41.190 | 420 | 175 | 15 | 37 | 450 | 29 | 382 | 9.72e-77 | 250 |
| Msa0547290 | AT3G06330.4 | 34.271 | 391 | 162 | 10 | 165 | 554 | 11 | 307 | 8.57e-53 | 183 |
| Msa0547290 | AT3G06330.1 | 32.877 | 438 | 194 | 11 | 118 | 554 | 80 | 418 | 2.87e-52 | 185 |
| Msa0547290 | AT3G06330.2 | 35.714 | 280 | 103 | 4 | 275 | 554 | 47 | 249 | 1.44e-49 | 173 |
| Msa0547290 | AT3G06330.3 | 35.866 | 329 | 152 | 10 | 118 | 445 | 80 | 350 | 2.19e-37 | 142 |
| Msa0547290 | AT5G18760.1 | 41.579 | 190 | 75 | 4 | 275 | 464 | 201 | 354 | 4.48e-37 | 143 |
| Msa0547290 | AT5G18760.2 | 44.898 | 147 | 45 | 4 | 275 | 421 | 201 | 311 | 2.41e-27 | 114 |
| Msa0547290 | AT2G37950.1 | 39.216 | 102 | 58 | 3 | 232 | 331 | 40 | 139 | 1.46e-13 | 70.5 |
| Msa0547290 | AT5G05830.1 | 43.750 | 80 | 40 | 2 | 270 | 345 | 72 | 150 | 3.69e-11 | 63.5 |
Find 141 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACTTAGTTAATAGTTAT+TGG | 0.150386 | 4_1:+40210688 | None:intergenic |
| CTTATAGATGATTTGCCTTT+TGG | 0.170375 | 4_1:+40209179 | None:intergenic |
| CTTGCAACATTTGCTGGTTT+TGG | 0.182361 | 4_1:-40206970 | Msa0547290:CDS |
| TGCTGCCAAAATTGAGTTTC+AGG | 0.184858 | 4_1:-40209151 | Msa0547290:CDS |
| ACAAAGAATGTGCTATTAAA+TGG | 0.203935 | 4_1:-40208432 | Msa0547290:CDS |
| GACAATGATCTTGATATTAA+AGG | 0.208947 | 4_1:+40209053 | None:intergenic |
| GGGATTCGTCGTATTGAATT+AGG | 0.215985 | 4_1:+40207143 | None:intergenic |
| CTATACCTGAAACTCAATTT+TGG | 0.221918 | 4_1:+40209146 | None:intergenic |
| TCATTGCCATTAGGAGAAAT+TGG | 0.239649 | 4_1:-40208990 | Msa0547290:CDS |
| ATCCTTCTTGCAACATTTGC+TGG | 0.241759 | 4_1:-40206976 | Msa0547290:CDS |
| TTTAAACTTCCAAGTTATTC+TGG | 0.255199 | 4_1:-40210597 | Msa0547290:five_prime_UTR |
| GTGTTCTTGATGGTATTTCT+AGG | 0.297442 | 4_1:+40209348 | None:intergenic |
| TCAGTTTGGAGTGCTGCTTA+TGG | 0.311114 | 4_1:-40206161 | Msa0547290:three_prime_UTR |
| CACTCTTCTTGTGTTCTTGA+TGG | 0.312086 | 4_1:+40209338 | None:intergenic |
| TATTAAATGGTTTAGTATAA+AGG | 0.322304 | 4_1:-40208419 | Msa0547290:CDS |
| ATTAAATGGTTTAGTATAAA+GGG | 0.326909 | 4_1:-40208418 | Msa0547290:CDS |
| TTTCCGCCATGAGTAGATTC+AGG | 0.327306 | 4_1:+40208957 | None:intergenic |
| CTACACACCGCCTCTTCTTC+AGG | 0.329720 | 4_1:+40208535 | None:intergenic |
| CAAAATTGAGTTTCAGGTAT+AGG | 0.332561 | 4_1:-40209145 | Msa0547290:CDS |
| TCCTTTACTCGAGGAGTAGA+AGG | 0.334132 | 4_1:+40208724 | None:intergenic |
| TTCTAGGCCTAGAAAATAGA+AGG | 0.348270 | 4_1:+40206200 | None:intergenic |
| TGCATAACTTATTGTGTATA+GGG | 0.367788 | 4_1:-40206708 | Msa0547290:intron |
| TAGGGTTTGGCAGGAAGTTC+CGG | 0.368420 | 4_1:-40207957 | Msa0547290:CDS |
| AATTGAGCAGACAAATAAAA+TGG | 0.369527 | 4_1:+40207983 | None:intergenic |
| CATAAGAAAATTCACTCTCT+TGG | 0.376527 | 4_1:+40209253 | None:intergenic |
| CTAAGTGGTATGGCTATCAT+TGG | 0.377267 | 4_1:-40210674 | Msa0547290:five_prime_UTR |
| AGACCTAATACACAGGAAAA+TGG | 0.380336 | 4_1:+40207681 | None:intergenic |
| GAATGTCCAATTTCTCCTAA+TGG | 0.383436 | 4_1:+40208984 | None:intergenic |
| ACTGATTCATTAGAATGAAC+TGG | 0.387760 | 4_1:+40207122 | None:intergenic |
| GACATGTGATGTCTGCAAAA+AGG | 0.391308 | 4_1:-40208389 | Msa0547290:CDS |
| TGCATCCTTCCAGTTTGCTC+TGG | 0.394539 | 4_1:-40207279 | Msa0547290:CDS |
| GGAGTAGGACTTGGTGTCAT+TGG | 0.395438 | 4_1:+40209287 | None:intergenic |
| AGAACTTCATCATTGCCATT+AGG | 0.398079 | 4_1:-40208999 | Msa0547290:CDS |
| ACAGCTACATTCCAACTTGA+AGG | 0.402108 | 4_1:+40208477 | None:intergenic |
| CTGCATAACTTATTGTGTAT+AGG | 0.405691 | 4_1:-40206709 | Msa0547290:three_prime_UTR |
| ATCCTTCCAGTTTGCTCTGG+TGG | 0.406030 | 4_1:-40207276 | Msa0547290:CDS |
| TGCTTGTTGAGTTCTTTAGA+TGG | 0.407275 | 4_1:-40206924 | Msa0547290:CDS |
| GAATCTACTCATGGCGGAAA+TGG | 0.407518 | 4_1:-40208954 | Msa0547290:CDS |
| CTGTAAAGGCGAACTTGCTT+TGG | 0.411554 | 4_1:-40208458 | Msa0547290:CDS |
| CAGTGATGAGCAGGTTCATA+TGG | 0.413395 | 4_1:-40207307 | Msa0547290:CDS |
| CAAAGTACCTTGTGAACAAC+AGG | 0.414633 | 4_1:+40210449 | None:intergenic |
| ATAGCAAGGACAAAAGTATA+AGG | 0.419132 | 4_1:-40208774 | Msa0547290:CDS |
| ATAAGAAAATTCACTCTCTT+GGG | 0.420956 | 4_1:+40209254 | None:intergenic |
| TTGTCCTTGCTATTGTTGGC+AGG | 0.426861 | 4_1:+40208784 | None:intergenic |
| TGCACGCAGTCAGCCACATC+TGG | 0.432809 | 4_1:-40208189 | Msa0547290:CDS |
| CACTATAGATTGATTGTGGT+TGG | 0.433741 | 4_1:+40206798 | None:intergenic |
| GGATCCAGAGTGTTCGAAAT+CGG | 0.434250 | 4_1:-40208336 | Msa0547290:CDS |
| CCTGCTTGTGTCATCGGTAG+AGG | 0.440663 | 4_1:+40206862 | None:intergenic |
| ACCTTCCTGTCACTCTATTA+CGG | 0.442572 | 4_1:-40208357 | Msa0547290:CDS |
| TTGGTAAAATATTTACTCCT+AGG | 0.443288 | 4_1:-40209028 | Msa0547290:CDS |
| ATGTAGTTACTTTACTTACA+TGG | 0.443306 | 4_1:-40206233 | Msa0547290:three_prime_UTR |
| AGAGAACCACCAGAGCAAAC+TGG | 0.443716 | 4_1:+40207270 | None:intergenic |
| ACGTCCCCACCAAAGGATAC+TGG | 0.444640 | 4_1:-40208682 | Msa0547290:intron |
| TGCTGTCCTGCTTGTGTCAT+CGG | 0.447497 | 4_1:+40206856 | None:intergenic |
| CCTGGATCTGCAACACCAAA+AGG | 0.448813 | 4_1:-40209194 | Msa0547290:CDS |
| ACTGTAACAACGCCACGTTC+AGG | 0.453422 | 4_1:-40206826 | Msa0547290:CDS |
| TTGACTATACCAGTATCCTT+TGG | 0.456459 | 4_1:+40208673 | None:intergenic |
| AAGTAACTACATATTGCATT+TGG | 0.459146 | 4_1:+40206244 | None:intergenic |
| ATTTGTGTCCAGTGATGAGC+AGG | 0.460699 | 4_1:-40207316 | Msa0547290:intron |
| ACAGGAAAATGGAAGAGATA+TGG | 0.465594 | 4_1:+40207692 | None:intergenic |
| TTCCGCCATGAGTAGATTCA+GGG | 0.482975 | 4_1:+40208958 | None:intergenic |
| CGTGGCGTTGTTACAGTTCG+AGG | 0.483224 | 4_1:+40206832 | None:intergenic |
| TTCTCTTCCTGTTGTTCACA+AGG | 0.486153 | 4_1:-40210456 | Msa0547290:intron |
| TCCTTCTACTCCTCGAGTAA+AGG | 0.487258 | 4_1:-40208725 | Msa0547290:CDS |
| ACTCTCTTGGGAGTAGGAGT+TGG | 0.487747 | 4_1:+40209266 | None:intergenic |
| TTGAGTTCTTTAGATGGAGA+AGG | 0.494098 | 4_1:-40206918 | Msa0547290:CDS |
| TAGATTGATTGTGGTTGGAT+TGG | 0.494569 | 4_1:+40206803 | None:intergenic |
| GTAGGAGTTGGAGTAGGACT+TGG | 0.496630 | 4_1:+40209278 | None:intergenic |
| GCCAATAACTATTAACTAAG+TGG | 0.499884 | 4_1:-40210689 | Msa0547290:five_prime_UTR |
| GCTCCGACAAATAATTCTCC+TGG | 0.502053 | 4_1:-40209212 | Msa0547290:CDS |
| GTCTGATCAGACTTCAAGTT+CGG | 0.504324 | 4_1:-40208163 | Msa0547290:intron |
| ATAGGATGGTGATGACTCAA+TGG | 0.509218 | 4_1:-40209423 | Msa0547290:intron |
| GGCGGAAATGGAAGTGTTGG+CGG | 0.514141 | 4_1:-40208942 | Msa0547290:CDS |
| TGGATCCGTAATAGAGTGAC+AGG | 0.523696 | 4_1:+40208352 | None:intergenic |
| CTATACCAGTATCCTTTGGT+GGG | 0.526137 | 4_1:+40208677 | None:intergenic |
| GGCGGTGTGTAGAATCTGTC+TGG | 0.532774 | 4_1:-40208524 | Msa0547290:CDS |
| AAGTTGGAATGTAGCTGTAA+AGG | 0.537209 | 4_1:-40208472 | Msa0547290:CDS |
| GATCCAGGAGAATTATTTGT+CGG | 0.538191 | 4_1:+40209209 | None:intergenic |
| TTGTGCTTCATAGGTACTGA+TGG | 0.540626 | 4_1:-40206421 | Msa0547290:intron |
| AAAGTGAGAGTGAAGGGTTG+AGG | 0.541365 | 4_1:-40206314 | Msa0547290:three_prime_UTR |
| CATGGCGGAAATGGAAGTGT+TGG | 0.541585 | 4_1:-40208945 | Msa0547290:CDS |
| TAACTATTAACTAAGTGGTA+TGG | 0.544420 | 4_1:-40210684 | Msa0547290:five_prime_UTR |
| TGCTTCGATTAGGAGCTTCG+TGG | 0.547637 | 4_1:-40208034 | Msa0547290:intron |
| CTGATTCATTAGAATGAACT+GGG | 0.550120 | 4_1:+40207123 | None:intergenic |
| TAGGATGGTGATGACTCAAT+GGG | 0.550280 | 4_1:-40209422 | Msa0547290:CDS |
| CTCTATGACATCATCAACCA+TGG | 0.553260 | 4_1:-40207652 | Msa0547290:CDS |
| GGACAAAAGTATAAGGAGGA+TGG | 0.553352 | 4_1:-40208767 | Msa0547290:CDS |
| AAAACAAAACCAGAATAACT+TGG | 0.555882 | 4_1:+40210588 | None:intergenic |
| ATATCAAGATCATTGTCACT+TGG | 0.558834 | 4_1:-40209047 | Msa0547290:CDS |
| ACTATACCAGTATCCTTTGG+TGG | 0.559429 | 4_1:+40208676 | None:intergenic |
| TCTTTAGATGGAGAAGGAGA+TGG | 0.561098 | 4_1:-40206912 | Msa0547290:CDS |
| CTGCTTGTGTCATCGGTAGA+GGG | 0.562795 | 4_1:+40206863 | None:intergenic |
| GCTTGTCATTGTTAGCATGT+TGG | 0.565634 | 4_1:-40207933 | Msa0547290:CDS |
| AAATTCACTCTCTTGGGAGT+AGG | 0.568812 | 4_1:+40209260 | None:intergenic |
| TAGGTCAAAGTGAGAGTGAA+GGG | 0.574000 | 4_1:-40206320 | Msa0547290:three_prime_UTR |
| ATGCTAACAATGACAAGCAC+CGG | 0.575004 | 4_1:+40207938 | None:intergenic |
| CATTCCGATTTCGAACACTC+TGG | 0.575417 | 4_1:+40208332 | None:intergenic |
| GACACCGGCAGATATTGAAA+AGG | 0.576803 | 4_1:-40209123 | Msa0547290:CDS |
| GCTTCTCATGACAAAGCTAG+TGG | 0.578689 | 4_1:-40206732 | Msa0547290:three_prime_UTR |
| TTCAGCACATGAAAACCAGA+AGG | 0.578828 | 4_1:-40206394 | Msa0547290:three_prime_UTR |
| GTTTGGAGTGCTGCTTATGG+AGG | 0.579410 | 4_1:-40206158 | Msa0547290:three_prime_UTR |
| TCATTTCCTTCCTTTACTCG+AGG | 0.581239 | 4_1:+40208715 | None:intergenic |
| AAAAGGCGAATACACCTACT+CGG | 0.581781 | 4_1:-40209106 | Msa0547290:CDS |
| AGGAGGCGAGACCTTCAAGT+TGG | 0.587069 | 4_1:-40208488 | Msa0547290:CDS |
| TTTGCACTATAGATTGATTG+TGG | 0.589452 | 4_1:+40206794 | None:intergenic |
| CATGGTTGATGATGTCATAG+AGG | 0.591035 | 4_1:+40207653 | None:intergenic |
| AAACATCACATGTTCCTCCC+AGG | 0.591425 | 4_1:-40209388 | Msa0547290:CDS |
| GTTGAAGACGTCCCCACCAA+AGG | 0.592437 | 4_1:-40208689 | Msa0547290:CDS |
| AACCAGCAAATGTTGCAAGA+AGG | 0.594657 | 4_1:+40206974 | None:intergenic |
| TCTACTCCTCGAGTAAAGGA+AGG | 0.597280 | 4_1:-40208721 | Msa0547290:CDS |
| TCAAACCCTGAATCTACTCA+TGG | 0.597536 | 4_1:-40208963 | Msa0547290:CDS |
| AATATAGTTCTCAAAGAAAG+CGG | 0.599599 | 4_1:+40207220 | None:intergenic |
| GAGTTTCAGGTATAGGACAC+CGG | 0.599623 | 4_1:-40209138 | Msa0547290:CDS |
| GAAGAGGAAACTTCCCGAGT+AGG | 0.600451 | 4_1:+40209092 | None:intergenic |
| CTCAAAGAAAGCGGTTACCA+AGG | 0.612020 | 4_1:+40207229 | None:intergenic |
| TCAGCACATGAAAACCAGAA+GGG | 0.614755 | 4_1:-40206393 | Msa0547290:three_prime_UTR |
| AGTGTTCGAAATCGGAATGG+TGG | 0.615884 | 4_1:-40208328 | Msa0547290:CDS |
| CAGAGTGTTCGAAATCGGAA+TGG | 0.618284 | 4_1:-40208331 | Msa0547290:CDS |
| TTGGGAGTAGGAGTTGGAGT+AGG | 0.618886 | 4_1:+40209272 | None:intergenic |
| TTAGGTCAAAGTGAGAGTGA+AGG | 0.619789 | 4_1:-40206321 | Msa0547290:three_prime_UTR |
| AGCACTCCAAACTGAAGATG+TGG | 0.621691 | 4_1:+40206169 | None:intergenic |
| CCTCTACCGATGACACAAGC+AGG | 0.621790 | 4_1:-40206862 | Msa0547290:CDS |
| TGAAGATATACCTGAAGAAG+AGG | 0.622698 | 4_1:-40208545 | Msa0547290:CDS |
| TCTATGACATCATCAACCAT+GGG | 0.623591 | 4_1:-40207651 | Msa0547290:intron |
| CTGATCAGACGATCCAGATG+TGG | 0.626490 | 4_1:+40208176 | None:intergenic |
| AAAGGCGAATACACCTACTC+GGG | 0.630530 | 4_1:-40209105 | Msa0547290:CDS |
| ATCGAAGATGATGATGATGA+TGG | 0.640558 | 4_1:-40208568 | Msa0547290:CDS |
| GCAAGGACAAAAGTATAAGG+AGG | 0.643759 | 4_1:-40208771 | Msa0547290:CDS |
| GGAGAGCAGACCTAATACAC+AGG | 0.644216 | 4_1:+40207674 | None:intergenic |
| AACCACCAGAGCAAACTGGA+AGG | 0.657209 | 4_1:+40207274 | None:intergenic |
| TATACCAGTATCCTTTGGTG+GGG | 0.657395 | 4_1:+40208678 | None:intergenic |
| TCCGTAATAGAGTGACAGGA+AGG | 0.661488 | 4_1:+40208356 | None:intergenic |
| GCTTCATTAGAGCAACAACA+TGG | 0.664561 | 4_1:-40206886 | Msa0547290:CDS |
| AATGCCTGCCAACAATAGCA+AGG | 0.666193 | 4_1:-40208788 | Msa0547290:CDS |
| GCTTAAAATCATACACTGAG+AGG | 0.668806 | 4_1:+40208918 | None:intergenic |
| TGGTTGGATTGGCCTGAACG+TGG | 0.672050 | 4_1:+40206814 | None:intergenic |
| AACCCTGAATCTACTCATGG+CGG | 0.679520 | 4_1:-40208960 | Msa0547290:CDS |
| AGATATACCTGAAGAAGAGG+CGG | 0.681280 | 4_1:-40208542 | Msa0547290:CDS |
| CTGGTTGAATTATGTGAAGG+AGG | 0.682969 | 4_1:-40208505 | Msa0547290:CDS |
| AGAAAATAAACATGTCACTG+AGG | 0.695376 | 4_1:-40210522 | Msa0547290:CDS |
| TGTCTGGTTGAATTATGTGA+AGG | 0.716899 | 4_1:-40208508 | Msa0547290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTTTCCAAAAAAAT+TGG | - | chr4_1:40206620-40206639 | Msa0547290:intron | 10.0% |
| !!! | TTCATTTTAGATTAGTAATT+TGG | + | chr4_1:40206722-40206741 | None:intergenic | 15.0% |
| !!! | TCTTTGATTTTTAATTCATT+TGG | - | chr4_1:40206805-40206824 | Msa0547290:CDS | 15.0% |
| !!! | CTATTTCATTTTGTATTTAT+AGG | - | chr4_1:40207372-40207391 | Msa0547290:intron | 15.0% |
| !!! | ATTATTTTCATAAGATAAGT+TGG | + | chr4_1:40207928-40207947 | None:intergenic | 15.0% |
| !! | TATTAAATGGTTTAGTATAA+AGG | - | chr4_1:40208394-40208413 | Msa0547290:CDS | 15.0% |
| !! | ATTAAATGGTTTAGTATAAA+GGG | - | chr4_1:40208395-40208414 | Msa0547290:CDS | 15.0% |
| !! | ATTTAAACAAAATAATGTCA+GGG | + | chr4_1:40209479-40209498 | None:intergenic | 15.0% |
| !! | AATTTAAACAAAATAATGTC+AGG | + | chr4_1:40209480-40209499 | None:intergenic | 15.0% |
| !! | TCATAAAAAAATCAGAAATT+AGG | + | chr4_1:40209777-40209796 | None:intergenic | 15.0% |
| !! | AAATTTGAAAACCAACAAAA+GGG | + | chr4_1:40206598-40206617 | None:intergenic | 20.0% |
| !! | AAAATTTGAAAACCAACAAA+AGG | + | chr4_1:40206599-40206618 | None:intergenic | 20.0% |
| !! | AGAAAACAGATAAAATTAGT+TGG | - | chr4_1:40206965-40206984 | Msa0547290:CDS | 20.0% |
| !!! | GTATCTTTTAATAGTCAATT+TGG | - | chr4_1:40207099-40207118 | Msa0547290:intron | 20.0% |
| !! | AAATTTAGTGATCAAAATGA+CGG | - | chr4_1:40207269-40207288 | Msa0547290:CDS | 20.0% |
| !!! | TTCATTTTGTATTTATAGGA+TGG | - | chr4_1:40207376-40207395 | Msa0547290:intron | 20.0% |
| !! | AAATTGACAAGTTAAAATGA+TGG | + | chr4_1:40207958-40207977 | None:intergenic | 20.0% |
| !!! | TTTATTTTCAAATGCTTTCT+TGG | - | chr4_1:40208215-40208234 | Msa0547290:intron | 20.0% |
| !! | TTGTATGATAAAGATTGATT+TGG | - | chr4_1:40208584-40208603 | Msa0547290:intron | 20.0% |
| !! | AAAAGATCTTTATTGGATTT+GGG | + | chr4_1:40208725-40208744 | None:intergenic | 20.0% |
| !! | AAATCAGAAAAGATCTTTAT+TGG | + | chr4_1:40208732-40208751 | None:intergenic | 20.0% |
| !!! | TCTGATTTTCTCTTTTTTAT+AGG | - | chr4_1:40209071-40209090 | Msa0547290:CDS | 20.0% |
| !!! | TTTTTTATAGGTGACAAAAA+TGG | - | chr4_1:40209083-40209102 | Msa0547290:CDS | 20.0% |
| !!! | TTTTTATAGGTGACAAAAAT+GGG | - | chr4_1:40209084-40209103 | Msa0547290:CDS | 20.0% |
| !!! | TCCATTTTGAATTTATAATG+TGG | - | chr4_1:40209241-40209260 | Msa0547290:CDS | 20.0% |
| !! | TCCACATTATAAATTCAAAA+TGG | + | chr4_1:40209245-40209264 | None:intergenic | 20.0% |
| ! | ACCACTTAGTTAATAGTTAT+TGG | + | chr4_1:40206128-40206147 | None:intergenic | 25.0% |
| ! | TAACTATTAACTAAGTGGTA+TGG | - | chr4_1:40206129-40206148 | Msa0547290:three_prime_UTR | 25.0% |
| ! | TTTAAACTTCCAAGTTATTC+TGG | - | chr4_1:40206216-40206235 | Msa0547290:three_prime_UTR | 25.0% |
| ! | AAAACAAAACCAGAATAACT+TGG | + | chr4_1:40206228-40206247 | None:intergenic | 25.0% |
| !!! | CTTTTATCTTCTCTTTGTTT+TGG | - | chr4_1:40206416-40206435 | Msa0547290:intron | 25.0% |
| !! | AATAAATAGTACCCTTTTGT+TGG | - | chr4_1:40206584-40206603 | Msa0547290:intron | 25.0% |
| ! | AACTGCATAATTCAAATTAG+AGG | + | chr4_1:40206666-40206685 | None:intergenic | 25.0% |
| !! | TACTATAGTTTTTGACATAC+TGG | + | chr4_1:40206907-40206926 | None:intergenic | 25.0% |
| ! | CAAAAACTATAGTACTTTGT+CGG | - | chr4_1:40206913-40206932 | Msa0547290:CDS | 25.0% |
| ! | ACAATTGAACTGATTAATAG+TGG | + | chr4_1:40206991-40207010 | None:intergenic | 25.0% |
| ! | AGTTCAATTGTATTGTAGTT+TGG | - | chr4_1:40207000-40207019 | Msa0547290:CDS | 25.0% |
| !! | TTTTGATCACTAAATTTGTG+AGG | + | chr4_1:40207266-40207285 | None:intergenic | 25.0% |
| ! | ATAAGAAAATTCACTCTCTT+GGG | + | chr4_1:40207562-40207581 | None:intergenic | 25.0% |
| ! | GACAATGATCTTGATATTAA+AGG | + | chr4_1:40207763-40207782 | None:intergenic | 25.0% |
| ! | TTGGTAAAATATTTACTCCT+AGG | - | chr4_1:40207785-40207804 | Msa0547290:intron | 25.0% |
| !! | ACAAAGAATGTGCTATTAAA+TGG | - | chr4_1:40208381-40208400 | Msa0547290:CDS | 25.0% |
| ! | GAAAAGATCTTTATTGGATT+TGG | + | chr4_1:40208726-40208745 | None:intergenic | 25.0% |
| ! | AATTGAGCAGACAAATAAAA+TGG | + | chr4_1:40208833-40208852 | None:intergenic | 25.0% |
| ! | TTGCTCAAGAAAACAAAAAT+AGG | + | chr4_1:40208906-40208925 | None:intergenic | 25.0% |
| ! | AATATAGTTCTCAAAGAAAG+CGG | + | chr4_1:40209596-40209615 | None:intergenic | 25.0% |
| !!! | TTTTCTCAAATGAAAAGTAC+AGG | + | chr4_1:40209626-40209645 | None:intergenic | 25.0% |
| ! | TGCATAACTTATTGTGTATA+GGG | - | chr4_1:40210105-40210124 | Msa0547290:intron | 25.0% |
| !! | ACTTTTATCACACATCTATA+TGG | - | chr4_1:40210139-40210158 | Msa0547290:intron | 25.0% |
| !! | CTTTTATCACACATCTATAT+GGG | - | chr4_1:40210140-40210159 | Msa0547290:intron | 25.0% |
| !! | TTGTACTGATCTATTAAGTA+CGG | - | chr4_1:40210222-40210241 | Msa0547290:intron | 25.0% |
| !!! | TTTTTGGCTTTCTTTTTTGT+AGG | - | chr4_1:40210443-40210462 | Msa0547290:intron | 25.0% |
| ! | AAGTAACTACATATTGCATT+TGG | + | chr4_1:40210572-40210591 | None:intergenic | 25.0% |
| !! | ATGTAGTTACTTTACTTACA+TGG | - | chr4_1:40210580-40210599 | Msa0547290:five_prime_UTR | 25.0% |
| !! | TGTATTTCCTTCTATTTTCT+AGG | - | chr4_1:40210606-40210625 | Msa0547290:five_prime_UTR | 25.0% |
| GCCAATAACTATTAACTAAG+TGG | - | chr4_1:40206124-40206143 | Msa0547290:three_prime_UTR | 30.0% | |
| AGAAAATAAACATGTCACTG+AGG | - | chr4_1:40206291-40206310 | Msa0547290:three_prime_UTR | 30.0% | |
| AGTGATGTTTCTTCATACTA+AGG | - | chr4_1:40206450-40206469 | Msa0547290:intron | 30.0% | |
| CTTCATACTAAGGTTCTTTA+AGG | - | chr4_1:40206460-40206479 | Msa0547290:intron | 30.0% | |
| !!! | AGATCAAGCTCCAATTTTTT+TGG | + | chr4_1:40206633-40206652 | None:intergenic | 30.0% |
| !! | CTAGCTGATATTTGTTATCA+AGG | - | chr4_1:40206748-40206767 | Msa0547290:three_prime_UTR | 30.0% |
| !! | TATTTGTTATCAAGGATCAG+TGG | - | chr4_1:40206756-40206775 | Msa0547290:exon | 30.0% |
| !! | AGAAGATTTTGTTTCTTCCT+GGG | + | chr4_1:40207445-40207464 | None:intergenic | 30.0% |
| CATAAGAAAATTCACTCTCT+TGG | + | chr4_1:40207563-40207582 | None:intergenic | 30.0% | |
| ! | TTTTCTTATGACTTCTCGTT+CGG | - | chr4_1:40207573-40207592 | Msa0547290:intron | 30.0% |
| !! | CTTATAGATGATTTGCCTTT+TGG | + | chr4_1:40207637-40207656 | None:intergenic | 30.0% |
| ! | CTATACCTGAAACTCAATTT+TGG | + | chr4_1:40207670-40207689 | None:intergenic | 30.0% |
| ! | CAAAATTGAGTTTCAGGTAT+AGG | - | chr4_1:40207668-40207687 | Msa0547290:CDS | 30.0% |
| ATATCAAGATCATTGTCACT+TGG | - | chr4_1:40207766-40207785 | Msa0547290:intron | 30.0% | |
| ! | TTTTGCAGAAAAAAGAGACT+CGG | - | chr4_1:40207979-40207998 | Msa0547290:CDS | 30.0% |
| ! | ATAGCAAGGACAAAAGTATA+AGG | - | chr4_1:40208039-40208058 | Msa0547290:intron | 30.0% |
| !! | TTCATTTTTCATGAATGCAG+AGG | + | chr4_1:40208190-40208209 | None:intergenic | 30.0% |
| ! | ATTTGTCTGCTCAATTTTGT+AGG | - | chr4_1:40208837-40208856 | Msa0547290:intron | 30.0% |
| ! | TTTGTCTGCTCAATTTTGTA+GGG | - | chr4_1:40208838-40208857 | Msa0547290:intron | 30.0% |
| ! | GTATAATCACATGTATCGAT+TGG | + | chr4_1:40209388-40209407 | None:intergenic | 30.0% |
| CTGATTCATTAGAATGAACT+GGG | + | chr4_1:40209693-40209712 | None:intergenic | 30.0% | |
| ! | ACTGATTCATTAGAATGAAC+TGG | + | chr4_1:40209694-40209713 | None:intergenic | 30.0% |
| TTTGCACTATAGATTGATTG+TGG | + | chr4_1:40210022-40210041 | None:intergenic | 30.0% | |
| CTGCATAACTTATTGTGTAT+AGG | - | chr4_1:40210104-40210123 | Msa0547290:intron | 30.0% | |
| TAACTTATTGTGTATAGGGT+AGG | - | chr4_1:40210109-40210128 | Msa0547290:intron | 30.0% | |
| AACTTATTGTGTATAGGGTA+GGG | - | chr4_1:40210110-40210129 | Msa0547290:intron | 30.0% | |
| TCTCAAATTATTTGCAGTGT+TGG | + | chr4_1:40210277-40210296 | None:intergenic | 30.0% | |
| ! | TGACACAATGATTTTGCTTT+AGG | - | chr4_1:40210474-40210493 | Msa0547290:CDS | 30.0% |
| ! | AGATGTGGAAAATCTTTTCT+AGG | + | chr4_1:40210632-40210651 | None:intergenic | 30.0% |
| !! | ATAAGGATTGGTTTGAGTGT+TGG | + | chr4_1:40206528-40206547 | None:intergenic | 35.0% |
| AACACTCAAACCAATCCTTA+TGG | - | chr4_1:40206527-40206546 | Msa0547290:intron | 35.0% | |
| !!! | GTGGTGTAGTTTGCTTTTTT+GGG | - | chr4_1:40206549-40206568 | Msa0547290:intron | 35.0% |
| ACTTTGTCGGTAAAGATGAA+TGG | - | chr4_1:40206926-40206945 | Msa0547290:CDS | 35.0% | |
| CTTTGTCGGTAAAGATGAAT+GGG | - | chr4_1:40206927-40206946 | Msa0547290:CDS | 35.0% | |
| TAGTCCTTGAATGTATGAGA+CGG | - | chr4_1:40207047-40207066 | Msa0547290:intron | 35.0% | |
| ATAACCGTCTCATACATTCA+AGG | + | chr4_1:40207054-40207073 | None:intergenic | 35.0% | |
| GTGTCTTTCATCAGTTAGTT+TGG | - | chr4_1:40207131-40207150 | Msa0547290:CDS | 35.0% | |
| TGATCACTAAATTTGTGAGG+TGG | + | chr4_1:40207263-40207282 | None:intergenic | 35.0% | |
| GATCAAAATGACGGTTTACT+CGG | - | chr4_1:40207278-40207297 | Msa0547290:CDS | 35.0% | |
| !! | GAGAAGATTTTGTTTCTTCC+TGG | + | chr4_1:40207446-40207465 | None:intergenic | 35.0% |
| ! | GTGTTCTTGATGGTATTTCT+AGG | + | chr4_1:40207468-40207487 | None:intergenic | 35.0% |
| GATCCAGGAGAATTATTTGT+CGG | + | chr4_1:40207607-40207626 | None:intergenic | 35.0% | |
| ! | GATGAAGTTCTTTTCATCCT+AGG | + | chr4_1:40207805-40207824 | None:intergenic | 35.0% |
| AGAACTTCATCATTGCCATT+AGG | - | chr4_1:40207814-40207833 | Msa0547290:intron | 35.0% | |
| TCATTGCCATTAGGAGAAAT+TGG | - | chr4_1:40207823-40207842 | Msa0547290:intron | 35.0% | |
| GAATGTCCAATTTCTCCTAA+TGG | + | chr4_1:40207832-40207851 | None:intergenic | 35.0% | |
| GCTTAAAATCATACACTGAG+AGG | + | chr4_1:40207898-40207917 | None:intergenic | 35.0% | |
| !!! | ACTTTTGTCCTTGCTATTGT+TGG | + | chr4_1:40208036-40208055 | None:intergenic | 35.0% |
| TTGACTATACCAGTATCCTT+TGG | + | chr4_1:40208143-40208162 | None:intergenic | 35.0% | |
| ! | ATCGAAGATGATGATGATGA+TGG | - | chr4_1:40208245-40208264 | Msa0547290:intron | 35.0% |
| TGAAGATATACCTGAAGAAG+AGG | - | chr4_1:40208268-40208287 | Msa0547290:intron | 35.0% | |
| TGTCTGGTTGAATTATGTGA+AGG | - | chr4_1:40208305-40208324 | Msa0547290:CDS | 35.0% | |
| AAGTTGGAATGTAGCTGTAA+AGG | - | chr4_1:40208341-40208360 | Msa0547290:CDS | 35.0% | |
| CATGCAAATATGCTTCGATT+AGG | - | chr4_1:40208769-40208788 | Msa0547290:CDS | 35.0% | |
| ! | TTGTTTTCTTGAGCAACTGT+TGG | - | chr4_1:40208910-40208929 | Msa0547290:intron | 35.0% |
| GAGAAAATCAGAAGCTACTT+TGG | + | chr4_1:40209063-40209082 | None:intergenic | 35.0% | |
| ACAGGAAAATGGAAGAGATA+TGG | + | chr4_1:40209124-40209143 | None:intergenic | 35.0% | |
| ! | CTTCCATTTTCCTGTGTATT+AGG | - | chr4_1:40209129-40209148 | Msa0547290:CDS | 35.0% |
| AGACCTAATACACAGGAAAA+TGG | + | chr4_1:40209135-40209154 | None:intergenic | 35.0% | |
| TCTATGACATCATCAACCAT+GGG | - | chr4_1:40209162-40209181 | Msa0547290:CDS | 35.0% | |
| CATGATATACAGAGTTGCAA+TGG | + | chr4_1:40209308-40209327 | None:intergenic | 35.0% | |
| CATTGCAACTCTGTATATCA+TGG | - | chr4_1:40209306-40209325 | Msa0547290:CDS | 35.0% | |
| ACAAAATAATGTCAGGGTTG+TGG | + | chr4_1:40209473-40209492 | None:intergenic | 35.0% | |
| TGCTAATGCTTCTCTATGTA+GGG | + | chr4_1:40209753-40209772 | None:intergenic | 35.0% | |
| ATGCTAATGCTTCTCTATGT+AGG | + | chr4_1:40209754-40209773 | None:intergenic | 35.0% | |
| ! | TTATGATATCTGTCACTTGC+AGG | - | chr4_1:40209791-40209810 | Msa0547290:intron | 35.0% |
| ! | TGCTTGTTGAGTTCTTTAGA+TGG | - | chr4_1:40209889-40209908 | Msa0547290:intron | 35.0% |
| TTGAGTTCTTTAGATGGAGA+AGG | - | chr4_1:40209895-40209914 | Msa0547290:intron | 35.0% | |
| TAGATTGATTGTGGTTGGAT+TGG | + | chr4_1:40210013-40210032 | None:intergenic | 35.0% | |
| CACTATAGATTGATTGTGGT+TGG | + | chr4_1:40210018-40210037 | None:intergenic | 35.0% | |
| ATTAAGTACGGATACAGACA+CGG | - | chr4_1:40210234-40210253 | Msa0547290:intron | 35.0% | |
| ! | ATGAAAACCAGAAGGGTTTT+TGG | - | chr4_1:40210427-40210446 | Msa0547290:intron | 35.0% |
| !!! | GCTTTCTTTTTTGTAGGCTT+GGG | - | chr4_1:40210449-40210468 | Msa0547290:intron | 35.0% |
| TTCTAGGCCTAGAAAATAGA+AGG | + | chr4_1:40210616-40210635 | None:intergenic | 35.0% | |
| ! | GATTTTCCACATCTTCAGTT+TGG | - | chr4_1:40210638-40210657 | Msa0547290:five_prime_UTR | 35.0% |
| CTAAGTGGTATGGCTATCAT+TGG | - | chr4_1:40206139-40206158 | Msa0547290:three_prime_UTR | 40.0% | |
| TTCTCTTCCTGTTGTTCACA+AGG | - | chr4_1:40206357-40206376 | Msa0547290:three_prime_UTR | 40.0% | |
| ! | CAAAGTACCTTGTGAACAAC+AGG | + | chr4_1:40206367-40206386 | None:intergenic | 40.0% |
| ACTCAAACCAATCCTTATGG+TGG | - | chr4_1:40206530-40206549 | Msa0547290:intron | 40.0% | |
| AACTACACCACCATAAGGAT+TGG | + | chr4_1:40206540-40206559 | None:intergenic | 40.0% | |
| AAGCAAACTACACCACCATA+AGG | + | chr4_1:40206545-40206564 | None:intergenic | 40.0% | |
| !!! | GGTGGTGTAGTTTGCTTTTT+TGG | - | chr4_1:40206548-40206567 | Msa0547290:intron | 40.0% |
| CGTGTCTTCTGTTAGTTACA+TGG | - | chr4_1:40207162-40207181 | Msa0547290:CDS | 40.0% | |
| CAAGTGAAGTTACGAACAGA+AGG | - | chr4_1:40207185-40207204 | Msa0547290:CDS | 40.0% | |
| ! | ATAGGATGGTGATGACTCAA+TGG | - | chr4_1:40207390-40207409 | Msa0547290:intron | 40.0% |
| ! | TAGGATGGTGATGACTCAAT+GGG | - | chr4_1:40207391-40207410 | Msa0547290:intron | 40.0% |
| !! | AGATTTTGTTTCTTCCTGGG+AGG | + | chr4_1:40207442-40207461 | None:intergenic | 40.0% |
| CACTCTTCTTGTGTTCTTGA+TGG | + | chr4_1:40207478-40207497 | None:intergenic | 40.0% | |
| AAATTCACTCTCTTGGGAGT+AGG | + | chr4_1:40207556-40207575 | None:intergenic | 40.0% | |
| TGCTGCCAAAATTGAGTTTC+AGG | - | chr4_1:40207662-40207681 | Msa0547290:CDS | 40.0% | |
| ! | TTCGCCTTTTCAATATCTGC+CGG | + | chr4_1:40207697-40207716 | None:intergenic | 40.0% |
| AAAAGGCGAATACACCTACT+CGG | - | chr4_1:40207707-40207726 | Msa0547290:CDS | 40.0% | |
| TCAAACCCTGAATCTACTCA+TGG | - | chr4_1:40207850-40207869 | Msa0547290:intron | 40.0% | |
| ! | GCAAGGACAAAAGTATAAGG+AGG | - | chr4_1:40208042-40208061 | Msa0547290:intron | 40.0% |
| ! | GGACAAAAGTATAAGGAGGA+TGG | - | chr4_1:40208046-40208065 | Msa0547290:intron | 40.0% |
| TCATTTCCTTCCTTTACTCG+AGG | + | chr4_1:40208101-40208120 | None:intergenic | 40.0% | |
| TATACCAGTATCCTTTGGTG+GGG | + | chr4_1:40208138-40208157 | None:intergenic | 40.0% | |
| CTATACCAGTATCCTTTGGT+GGG | + | chr4_1:40208139-40208158 | None:intergenic | 40.0% | |
| ACTATACCAGTATCCTTTGG+TGG | + | chr4_1:40208140-40208159 | None:intergenic | 40.0% | |
| AGATATACCTGAAGAAGAGG+CGG | - | chr4_1:40208271-40208290 | Msa0547290:intron | 40.0% | |
| CTGGTTGAATTATGTGAAGG+AGG | - | chr4_1:40208308-40208327 | Msa0547290:CDS | 40.0% | |
| ACAGCTACATTCCAACTTGA+AGG | + | chr4_1:40208339-40208358 | None:intergenic | 40.0% | |
| GACATGTGATGTCTGCAAAA+AGG | - | chr4_1:40208424-40208443 | Msa0547290:CDS | 40.0% | |
| ATGTGATGTCTGCAAAAAGG+AGG | - | chr4_1:40208427-40208446 | Msa0547290:CDS | 40.0% | |
| ACCTTCCTGTCACTCTATTA+CGG | - | chr4_1:40208456-40208475 | Msa0547290:CDS | 40.0% | |
| ! | GTCTGATCAGACTTCAAGTT+CGG | - | chr4_1:40208650-40208669 | Msa0547290:intron | 40.0% |
| TTAGCCATATCTGGATCAGA+CGG | + | chr4_1:40208692-40208711 | None:intergenic | 40.0% | |
| TCTGATCCAGATATGGCTAA+CGG | - | chr4_1:40208692-40208711 | Msa0547290:CDS | 40.0% | |
| TGCATGACTCACTCATTCAT+TGG | + | chr4_1:40208755-40208774 | None:intergenic | 40.0% | |
| ! | CTGCTCAATTTTGTAGGGTT+TGG | - | chr4_1:40208843-40208862 | Msa0547290:intron | 40.0% |
| ! | TCAATTTTGTAGGGTTTGGC+AGG | - | chr4_1:40208847-40208866 | Msa0547290:intron | 40.0% |
| ATGCTAACAATGACAAGCAC+CGG | + | chr4_1:40208878-40208897 | None:intergenic | 40.0% | |
| GCTTGTCATTGTTAGCATGT+TGG | - | chr4_1:40208880-40208899 | Msa0547290:intron | 40.0% | |
| TAGGTGACAAAAATGGGAAC+TGG | - | chr4_1:40209090-40209109 | Msa0547290:CDS | 40.0% | |
| !! | CATGGTTGATGATGTCATAG+AGG | + | chr4_1:40209163-40209182 | None:intergenic | 40.0% |
| CTCTATGACATCATCAACCA+TGG | - | chr4_1:40209161-40209180 | Msa0547290:CDS | 40.0% | |
| ! | CGCGCATATATTTTACTCCT+TGG | - | chr4_1:40209567-40209586 | Msa0547290:intron | 40.0% |
| GGGATTCGTCGTATTGAATT+AGG | + | chr4_1:40209673-40209692 | None:intergenic | 40.0% | |
| ATCCTTCTTGCAACATTTGC+TGG | - | chr4_1:40209837-40209856 | Msa0547290:intron | 40.0% | |
| AACCAGCAAATGTTGCAAGA+AGG | + | chr4_1:40209842-40209861 | None:intergenic | 40.0% | |
| !!! | CTTGCAACATTTGCTGGTTT+TGG | - | chr4_1:40209843-40209862 | Msa0547290:intron | 40.0% |
| !! | GGTTTTGGTGTAGTAATGAG+TGG | - | chr4_1:40209858-40209877 | Msa0547290:intron | 40.0% |
| TCTTTAGATGGAGAAGGAGA+TGG | - | chr4_1:40209901-40209920 | Msa0547290:intron | 40.0% | |
| GCTTCATTAGAGCAACAACA+TGG | - | chr4_1:40209927-40209946 | Msa0547290:intron | 40.0% | |
| GGACTTCATTGTACAGCTTA+TGG | - | chr4_1:40210161-40210180 | Msa0547290:intron | 40.0% | |
| GGATATAGCTTCTCTTGCTA+TGG | - | chr4_1:40210182-40210201 | Msa0547290:intron | 40.0% | |
| ATTATGTGTCAGTGTCGTGT+TGG | - | chr4_1:40210317-40210336 | Msa0547290:intron | 40.0% | |
| TATGAAGCACAAACACTCCT+CGG | + | chr4_1:40210384-40210403 | None:intergenic | 40.0% | |
| !! | TTGTGCTTCATAGGTACTGA+TGG | - | chr4_1:40210392-40210411 | Msa0547290:intron | 40.0% |
| TTCAGCACATGAAAACCAGA+AGG | - | chr4_1:40210419-40210438 | Msa0547290:intron | 40.0% | |
| TCAGCACATGAAAACCAGAA+GGG | - | chr4_1:40210420-40210439 | Msa0547290:intron | 40.0% | |
| AAGAAAGCCAAAAACCCTTC+TGG | + | chr4_1:40210437-40210456 | None:intergenic | 40.0% | |
| !!! | GGCTTTCTTTTTTGTAGGCT+TGG | - | chr4_1:40210448-40210467 | Msa0547290:intron | 40.0% |
| TTAGGTCAAAGTGAGAGTGA+AGG | - | chr4_1:40210492-40210511 | Msa0547290:CDS | 40.0% | |
| TAGGTCAAAGTGAGAGTGAA+GGG | - | chr4_1:40210493-40210512 | Msa0547290:CDS | 40.0% | |
| !! | AGGATTGGTTTGAGTGTTGG+TGG | + | chr4_1:40206525-40206544 | None:intergenic | 45.0% |
| ! | TTACGAACAGAAGGCACACT+CGG | - | chr4_1:40207194-40207213 | Msa0547290:CDS | 45.0% |
| AAACATCACATGTTCCTCCC+AGG | - | chr4_1:40207425-40207444 | Msa0547290:intron | 45.0% | |
| GCTCCGACAAATAATTCTCC+TGG | - | chr4_1:40207601-40207620 | Msa0547290:intron | 45.0% | |
| ! | GAGTTTCAGGTATAGGACAC+CGG | - | chr4_1:40207675-40207694 | Msa0547290:CDS | 45.0% |
| GACACCGGCAGATATTGAAA+AGG | - | chr4_1:40207690-40207709 | Msa0547290:CDS | 45.0% | |
| AAAGGCGAATACACCTACTC+GGG | - | chr4_1:40207708-40207727 | Msa0547290:CDS | 45.0% | |
| AACCCTGAATCTACTCATGG+CGG | - | chr4_1:40207853-40207872 | Msa0547290:intron | 45.0% | |
| TTCCGCCATGAGTAGATTCA+GGG | + | chr4_1:40207858-40207877 | None:intergenic | 45.0% | |
| TTTCCGCCATGAGTAGATTC+AGG | + | chr4_1:40207859-40207878 | None:intergenic | 45.0% | |
| ! | GAATCTACTCATGGCGGAAA+TGG | - | chr4_1:40207859-40207878 | Msa0547290:intron | 45.0% |
| AATGCCTGCCAACAATAGCA+AGG | - | chr4_1:40208025-40208044 | Msa0547290:CDS | 45.0% | |
| !! | TTGTCCTTGCTATTGTTGGC+AGG | + | chr4_1:40208032-40208051 | None:intergenic | 45.0% |
| TCCTTCTACTCCTCGAGTAA+AGG | - | chr4_1:40208088-40208107 | Msa0547290:intron | 45.0% | |
| TCCTTTACTCGAGGAGTAGA+AGG | + | chr4_1:40208092-40208111 | None:intergenic | 45.0% | |
| TCTACTCCTCGAGTAAAGGA+AGG | - | chr4_1:40208092-40208111 | Msa0547290:intron | 45.0% | |
| ! | CTGTAAAGGCGAACTTGCTT+TGG | - | chr4_1:40208355-40208374 | Msa0547290:CDS | 45.0% |
| TCCGTAATAGAGTGACAGGA+AGG | + | chr4_1:40208460-40208479 | None:intergenic | 45.0% | |
| TGGATCCGTAATAGAGTGAC+AGG | + | chr4_1:40208464-40208483 | None:intergenic | 45.0% | |
| ! | GGATCCAGAGTGTTCGAAAT+CGG | - | chr4_1:40208477-40208496 | Msa0547290:CDS | 45.0% |
| CATTCCGATTTCGAACACTC+TGG | + | chr4_1:40208484-40208503 | None:intergenic | 45.0% | |
| ! | CAGAGTGTTCGAAATCGGAA+TGG | - | chr4_1:40208482-40208501 | Msa0547290:CDS | 45.0% |
| AGTGTTCGAAATCGGAATGG+TGG | - | chr4_1:40208485-40208504 | Msa0547290:CDS | 45.0% | |
| GCTCAGCTTGAAGACGTAAA+CGG | - | chr4_1:40208518-40208537 | Msa0547290:CDS | 45.0% | |
| CTCAGCTTGAAGACGTAAAC+GGG | - | chr4_1:40208519-40208538 | Msa0547290:CDS | 45.0% | |
| TTGAAGACGTAAACGGGTAC+AGG | - | chr4_1:40208525-40208544 | Msa0547290:CDS | 45.0% | |
| TAGACCGTCTGATCCAGATA+TGG | - | chr4_1:40208685-40208704 | Msa0547290:CDS | 45.0% | |
| TGACATCATCAACCATGGGT+AGG | - | chr4_1:40209166-40209185 | Msa0547290:CDS | 45.0% | |
| ATGTGTTGTGAACCTACCCA+TGG | + | chr4_1:40209181-40209200 | None:intergenic | 45.0% | |
| GTGGATCAGTCAAAGTCAGT+TGG | - | chr4_1:40209260-40209279 | Msa0547290:CDS | 45.0% | |
| ATTTGTGTCCAGTGATGAGC+AGG | - | chr4_1:40209497-40209516 | Msa0547290:intron | 45.0% | |
| CATATGAACCTGCTCATCAC+TGG | + | chr4_1:40209508-40209527 | None:intergenic | 45.0% | |
| CAGTGATGAGCAGGTTCATA+TGG | - | chr4_1:40209506-40209525 | Msa0547290:intron | 45.0% | |
| CTCAAAGAAAGCGGTTACCA+AGG | + | chr4_1:40209587-40209606 | None:intergenic | 45.0% | |
| GCTTCTCATGACAAAGCTAG+TGG | - | chr4_1:40210081-40210100 | Msa0547290:intron | 45.0% | |
| !! | GAGGAGTGTTTGTGCTTCAT+AGG | - | chr4_1:40210383-40210402 | Msa0547290:intron | 45.0% |
| AAAGTGAGAGTGAAGGGTTG+AGG | - | chr4_1:40210499-40210518 | Msa0547290:CDS | 45.0% | |
| AGCACTCCAAACTGAAGATG+TGG | + | chr4_1:40210647-40210666 | None:intergenic | 45.0% | |
| !! | TCAGTTTGGAGTGCTGCTTA+TGG | - | chr4_1:40210652-40210671 | Msa0547290:five_prime_UTR | 45.0% |
| !! | GGAGTAGGACTTGGTGTCAT+TGG | + | chr4_1:40207529-40207548 | None:intergenic | 50.0% |
| GTAGGAGTTGGAGTAGGACT+TGG | + | chr4_1:40207538-40207557 | None:intergenic | 50.0% | |
| TTGGGAGTAGGAGTTGGAGT+AGG | + | chr4_1:40207544-40207563 | None:intergenic | 50.0% | |
| ACTCTCTTGGGAGTAGGAGT+TGG | + | chr4_1:40207550-40207569 | None:intergenic | 50.0% | |
| !!! | CCTTTTGGTGTTGCAGATCC+AGG | + | chr4_1:40207622-40207641 | None:intergenic | 50.0% |
| CCTGGATCTGCAACACCAAA+AGG | - | chr4_1:40207619-40207638 | Msa0547290:intron | 50.0% | |
| GAAGAGGAAACTTCCCGAGT+AGG | + | chr4_1:40207724-40207743 | None:intergenic | 50.0% | |
| ! | CTTTTCTCGAGTGCTCGAAG+AGG | + | chr4_1:40207740-40207759 | None:intergenic | 50.0% |
| ! | CATGGCGGAAATGGAAGTGT+TGG | - | chr4_1:40207868-40207887 | Msa0547290:intron | 50.0% |
| CTGATCAGACGATCCAGATG+TGG | + | chr4_1:40208640-40208659 | None:intergenic | 50.0% | |
| ! | TGTGTGCCGTTAGCCATATC+TGG | + | chr4_1:40208701-40208720 | None:intergenic | 50.0% |
| TGCTTCGATTAGGAGCTTCG+TGG | - | chr4_1:40208779-40208798 | Msa0547290:CDS | 50.0% | |
| TAGGGTTTGGCAGGAAGTTC+CGG | - | chr4_1:40208856-40208875 | Msa0547290:intron | 50.0% | |
| GGAGAGCAGACCTAATACAC+AGG | + | chr4_1:40209142-40209161 | None:intergenic | 50.0% | |
| ! | TGCATCCTTCCAGTTTGCTC+TGG | - | chr4_1:40209534-40209553 | Msa0547290:intron | 50.0% |
| ! | ATCCTTCCAGTTTGCTCTGG+TGG | - | chr4_1:40209537-40209556 | Msa0547290:intron | 50.0% |
| AACCACCAGAGCAAACTGGA+AGG | + | chr4_1:40209542-40209561 | None:intergenic | 50.0% | |
| AGAGAACCACCAGAGCAAAC+TGG | + | chr4_1:40209546-40209565 | None:intergenic | 50.0% | |
| CTGCTTGTGTCATCGGTAGA+GGG | + | chr4_1:40209953-40209972 | None:intergenic | 50.0% | |
| TGCTGTCCTGCTTGTGTCAT+CGG | + | chr4_1:40209960-40209979 | None:intergenic | 50.0% | |
| ACTGTAACAACGCCACGTTC+AGG | - | chr4_1:40209987-40210006 | Msa0547290:intron | 50.0% | |
| ATGTGACACGTGTCTGACAC+CGG | - | chr4_1:40210346-40210365 | Msa0547290:intron | 50.0% | |
| !! | GTTTGGAGTGCTGCTTATGG+AGG | - | chr4_1:40210655-40210674 | Msa0547290:five_prime_UTR | 50.0% |
| !! | GGCGGAAATGGAAGTGTTGG+CGG | - | chr4_1:40207871-40207890 | Msa0547290:intron | 55.0% |
| GTTGAAGACGTCCCCACCAA+AGG | - | chr4_1:40208124-40208143 | Msa0547290:intron | 55.0% | |
| ACGTCCCCACCAAAGGATAC+TGG | - | chr4_1:40208131-40208150 | Msa0547290:intron | 55.0% | |
| CTACACACCGCCTCTTCTTC+AGG | + | chr4_1:40208281-40208300 | None:intergenic | 55.0% | |
| GGCGGTGTGTAGAATCTGTC+TGG | - | chr4_1:40208289-40208308 | Msa0547290:intron | 55.0% | |
| AGGAGGCGAGACCTTCAAGT+TGG | - | chr4_1:40208325-40208344 | Msa0547290:CDS | 55.0% | |
| CCTGCTTGTGTCATCGGTAG+AGG | + | chr4_1:40209954-40209973 | None:intergenic | 55.0% | |
| CCTCTACCGATGACACAAGC+AGG | - | chr4_1:40209951-40209970 | Msa0547290:intron | 55.0% | |
| CGTGGCGTTGTTACAGTTCG+AGG | + | chr4_1:40209984-40210003 | None:intergenic | 55.0% | |
| !! | TGGTTGGATTGGCCTGAACG+TGG | + | chr4_1:40210002-40210021 | None:intergenic | 55.0% |
| TGTGACACGTGTCTGACACC+GGG | - | chr4_1:40210347-40210366 | Msa0547290:intron | 55.0% | |
| ! | TCCTCGGATTAGACGTGTCC+CGG | + | chr4_1:40210368-40210387 | None:intergenic | 55.0% |
| TGCACGCAGTCAGCCACATC+TGG | - | chr4_1:40208624-40208643 | Msa0547290:intron | 60.0% | |
| ACCGGGACACGTCTAATCCG+AGG | - | chr4_1:40210364-40210383 | Msa0547290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 40206124 | 40210711 | 40206124 | ID=Msa0547290;Name=Msa0547290 |
| chr4_1 | mRNA | 40206124 | 40210711 | 40206124 | ID=Msa0547290-mRNA-1;Parent=Msa0547290;Name=Msa0547290-mRNA-1;_AED=0.15;_eAED=0.15;_QI=156|0.66|0.6|1|0.88|0.8|10|366|602 |
| chr4_1 | exon | 40206124 | 40206430 | 40206124 | ID=Msa0547290-mRNA-1:exon:10294;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40206709 | 40207022 | 40206709 | ID=Msa0547290-mRNA-1:exon:10293;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40207124 | 40207326 | 40207124 | ID=Msa0547290-mRNA-1:exon:10292;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40207652 | 40207742 | 40207652 | ID=Msa0547290-mRNA-1:exon:10291;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40207904 | 40208044 | 40207904 | ID=Msa0547290-mRNA-1:exon:10290;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40208164 | 40208217 | 40208164 | ID=Msa0547290-mRNA-1:exon:10289;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40208303 | 40208592 | 40208303 | ID=Msa0547290-mRNA-1:exon:10288;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40208683 | 40208848 | 40208683 | ID=Msa0547290-mRNA-1:exon:10287;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40208932 | 40209441 | 40208932 | ID=Msa0547290-mRNA-1:exon:10286;Parent=Msa0547290-mRNA-1 |
| chr4_1 | exon | 40210457 | 40210711 | 40210457 | ID=Msa0547290-mRNA-1:exon:10285;Parent=Msa0547290-mRNA-1 |
| chr4_1 | five_prime_UTR | 40210556 | 40210711 | 40210556 | ID=Msa0547290-mRNA-1:five_prime_utr;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40210457 | 40210555 | 40210457 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40208932 | 40209441 | 40208932 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40208683 | 40208848 | 40208683 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40208303 | 40208592 | 40208303 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40208164 | 40208217 | 40208164 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40207904 | 40208044 | 40207904 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40207652 | 40207742 | 40207652 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40207124 | 40207326 | 40207124 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | CDS | 40206768 | 40207022 | 40206768 | ID=Msa0547290-mRNA-1:cds;Parent=Msa0547290-mRNA-1 |
| chr4_1 | three_prime_UTR | 40206709 | 40206767 | 40206709 | ID=Msa0547290-mRNA-1:three_prime_utr;Parent=Msa0547290-mRNA-1 |
| chr4_1 | three_prime_UTR | 40206124 | 40206430 | 40206124 | ID=Msa0547290-mRNA-1:three_prime_utr;Parent=Msa0547290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
