Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602440 | KEH30070.1 | 98.534 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602440 | sp|Q9LZG0|ADK2_ARATH | 83.086 | 337 | 57 | 0 | 4 | 340 | 8 | 344 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0136890 | Msa0602440 | 0.814056 | 1.870715e-51 | -8.615850e-47 |
| Msa0602440 | Msa0683560 | 0.804753 | 1.857092e-49 | -8.615850e-47 |
| Msa0602440 | Msa1364330 | 0.818972 | 1.482825e-52 | -8.615850e-47 |
| Msa0602440 | Msa1390280 | 0.801885 | 7.290481e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602440 | MtrunA17_Chr1g0181071 | 95.894 | 341 | 14 | 0 | 1 | 341 | 1 | 341 | 0.0 | 685 |
| Msa0602440 | MtrunA17_Chr4g0030041 | 96.491 | 342 | 11 | 1 | 1 | 341 | 1 | 342 | 0.0 | 682 |
| Msa0602440 | MtrunA17_Chr3g0141731 | 25.994 | 327 | 210 | 15 | 12 | 326 | 27 | 333 | 2.32e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602440 | AT5G03300.1 | 83.086 | 337 | 57 | 0 | 4 | 340 | 8 | 344 | 0.0 | 603 |
| Msa0602440 | AT3G09820.1 | 83.432 | 338 | 56 | 0 | 3 | 340 | 6 | 343 | 0.0 | 600 |
| Msa0602440 | AT3G09820.2 | 84.694 | 294 | 45 | 0 | 47 | 340 | 8 | 301 | 0.0 | 529 |
| Msa0602440 | AT5G03300.3 | 83.505 | 291 | 48 | 0 | 50 | 340 | 1 | 291 | 0.0 | 524 |
| Msa0602440 | AT5G03300.2 | 83.505 | 291 | 48 | 0 | 50 | 340 | 1 | 291 | 0.0 | 524 |
| Msa0602440 | AT1G19600.1 | 26.205 | 332 | 216 | 14 | 14 | 336 | 23 | 334 | 1.28e-14 | 74.3 |
| Msa0602440 | AT4G27600.1 | 23.585 | 318 | 204 | 11 | 7 | 308 | 123 | 417 | 1.23e-11 | 65.9 |
Find 112 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAACTTTAGAAATTTAA+AGG | 0.145112 | 4_2:+46052657 | None:intergenic |
| AGGTATATGGACTATGTATT+TGG | 0.205120 | 4_2:+46055201 | Msa0602440:intron |
| ACCAGCTTGTTTAGAGTTCT+TGG | 0.208302 | 4_2:-46054402 | None:intergenic |
| ATTTGAAGAAACCCGAAAAT+TGG | 0.225304 | 4_2:+46054751 | Msa0602440:CDS |
| AGTTGCACTCTAACTGGTTT+TGG | 0.231902 | 4_2:+46055847 | Msa0602440:three_prime_UTR |
| GTTACAAACATGAAACTTAA+AGG | 0.232548 | 4_2:+46052717 | Msa0602440:five_prime_UTR |
| TTCCTGATGCCTTTGGCAAC+TGG | 0.236821 | 4_2:-46055395 | None:intergenic |
| CATTCTGGGATTCAGGTATA+TGG | 0.238438 | 4_2:+46055188 | Msa0602440:intron |
| GCCAAATATTTCTATATTGC+TGG | 0.248568 | 4_2:+46054883 | Msa0602440:CDS |
| GTATCAACTAATTTCTCTTT+AGG | 0.253965 | 4_2:-46055510 | None:intergenic |
| TCTTTAGGTAATAGAATTAC+AGG | 0.256176 | 4_2:-46055495 | None:intergenic |
| CTTGAAGAACTCACATATAA+AGG | 0.274936 | 4_2:-46055075 | None:intergenic |
| AATGTACTCCACGTTATATT+TGG | 0.281042 | 4_2:-46054074 | None:intergenic |
| TCCAGCAATATAGAAATATT+TGG | 0.289493 | 4_2:-46054884 | None:intergenic |
| TATTGAAAATCAGGCTTCTC+TGG | 0.291194 | 4_2:-46055754 | None:intergenic |
| ATTAATAGTTGCACTCTAAC+TGG | 0.308482 | 4_2:+46055841 | Msa0602440:three_prime_UTR |
| GCTTTGGAAGGTGTTCTTCT+TGG | 0.324177 | 4_2:+46052927 | Msa0602440:CDS |
| AGAATCACTTATTGAAAATC+AGG | 0.327042 | 4_2:-46055763 | None:intergenic |
| TAAGAAATGATGCCTATATT+AGG | 0.332428 | 4_2:-46055955 | None:intergenic |
| AGCAACTAATTGAATGGATT+CGG | 0.333100 | 4_2:-46054926 | None:intergenic |
| GGAAGGTGTTCTTCTTGGTA+TGG | 0.348012 | 4_2:+46052932 | Msa0602440:CDS |
| GCAACTAATTGAATGGATTC+GGG | 0.354886 | 4_2:-46054925 | None:intergenic |
| TAGTGGTTGCTTCAAGTTCC+CGG | 0.356075 | 4_2:+46054326 | Msa0602440:intron |
| TGGAGGATTTCTTTCACAAT+TGG | 0.357365 | 4_2:+46055648 | Msa0602440:CDS |
| TGTATTTGAAGTCCTAATAT+AGG | 0.362122 | 4_2:+46055943 | Msa0602440:three_prime_UTR |
| TTCACCCCTTCTCCCTAGTC+GGG | 0.363565 | 4_2:-46055885 | None:intergenic |
| GCTCTCACACATTCTTCAAT+AGG | 0.364927 | 4_2:-46055682 | None:intergenic |
| TCCTGATGCCTTTGGCAACT+GGG | 0.376131 | 4_2:-46055394 | None:intergenic |
| CGAGAATAGCATTGTTCAAC+TGG | 0.377377 | 4_2:-46053169 | None:intergenic |
| TCTCGCATCAACAATGGCTT+TGG | 0.379448 | 4_2:+46052911 | Msa0602440:exon |
| TTGTGTGTTCCTGATGCCTT+TGG | 0.383545 | 4_2:-46055402 | None:intergenic |
| TGCATTGGGAAGGACAAGTT+TGG | 0.384984 | 4_2:+46054368 | Msa0602440:CDS |
| AAACCCGAAAATTGGGCATT+AGG | 0.397247 | 4_2:+46054759 | Msa0602440:CDS |
| CTTTATATGTGAGTTCTTCA+AGG | 0.401114 | 4_2:+46055076 | Msa0602440:CDS |
| TTTGAAGAAACCCGAAAATT+GGG | 0.414245 | 4_2:+46054752 | Msa0602440:CDS |
| AGCTATCTCCTCGACATTAT+CGG | 0.414959 | 4_2:-46055361 | None:intergenic |
| ACTTGTGCTGTTTGTGTCGT+TGG | 0.426149 | 4_2:+46054559 | Msa0602440:CDS |
| CTTCAAAATAGTAATAGAAT+CGG | 0.427891 | 4_2:-46055787 | None:intergenic |
| ACCGATGTAACTAGTGGCTC+CGG | 0.432188 | 4_2:-46054345 | None:intergenic |
| CTAGTTACATCGGTTGCATT+GGG | 0.448977 | 4_2:+46054354 | Msa0602440:CDS |
| TTTGTAGGAGATGCCTTTGT+TGG | 0.450937 | 4_2:+46055628 | Msa0602440:intron |
| ACTAGTTACATCGGTTGCAT+TGG | 0.454698 | 4_2:+46054353 | Msa0602440:CDS |
| TTGAAGAACTCACATATAAA+GGG | 0.455056 | 4_2:-46055074 | None:intergenic |
| GTAGGAGATGCCTTTGTTGG+AGG | 0.455368 | 4_2:+46055631 | Msa0602440:intron |
| TCCCAGTTGCCAAAGGCATC+AGG | 0.461050 | 4_2:+46055393 | Msa0602440:CDS |
| CTTCACCCCTTCTCCCTAGT+CGG | 0.463103 | 4_2:-46055886 | None:intergenic |
| AAATTAAATCTCGTTGTCGT+TGG | 0.464856 | 4_2:+46052845 | Msa0602440:five_prime_UTR |
| ATTCTTCAATAGGTTTCTCC+TGG | 0.464884 | 4_2:-46055672 | None:intergenic |
| GAATTCAATCAGGGTTGCTC+AGG | 0.465156 | 4_2:+46054208 | Msa0602440:CDS |
| GTGCTACTCAGAATTCAATC+AGG | 0.465309 | 4_2:+46054198 | Msa0602440:CDS |
| GAAGGTGTTCTTCTTGGTAT+GGG | 0.471521 | 4_2:+46052933 | Msa0602440:CDS |
| TAGGGCATTACCTGCTCCAT+TGG | 0.477788 | 4_2:-46055532 | None:intergenic |
| ATGTTCAGCAACTAATTGAA+TGG | 0.478120 | 4_2:-46054932 | None:intergenic |
| AAGGGGTGAAGAAGTTGTCG+AGG | 0.479973 | 4_2:+46055898 | Msa0602440:three_prime_UTR |
| GCAATTTGCAGCTGATAAGT+TGG | 0.489440 | 4_2:-46054715 | None:intergenic |
| CTTCTCTGGGTAAGTGCAGC+CGG | 0.491076 | 4_2:-46055740 | None:intergenic |
| GTTTCATGTTTGTAACAGAT+AGG | 0.493780 | 4_2:-46052710 | None:intergenic |
| ATTGAAAATCAGGCTTCTCT+GGG | 0.503018 | 4_2:-46055753 | None:intergenic |
| CCCGTGTGTGTTGCTCAAGA+TGG | 0.504240 | 4_2:+46055456 | Msa0602440:CDS |
| ATTTCTTTCACAATTGGTCC+AGG | 0.505204 | 4_2:+46055654 | Msa0602440:CDS |
| AATGTTATCATTCAAAGGTC+CGG | 0.511083 | 4_2:+46055721 | Msa0602440:CDS |
| TTCAAAATAGTAATAGAATC+GGG | 0.513215 | 4_2:-46055786 | None:intergenic |
| TATAACGTGGAGTACATTGC+TGG | 0.514705 | 4_2:+46054079 | Msa0602440:CDS |
| ATCAGCACCCTGTGTGATAA+CGG | 0.517329 | 4_2:-46055433 | None:intergenic |
| TACGGAAGAGCTTTCTCCTG+TGG | 0.523507 | 4_2:-46055101 | None:intergenic |
| GAGAAATTAGTTGATACCAA+TGG | 0.529177 | 4_2:+46055516 | Msa0602440:CDS |
| AGGCATCAGGAACACACAAA+AGG | 0.529385 | 4_2:+46055406 | Msa0602440:CDS |
| AAAATCCCCGACTAGGGAGA+AGG | 0.532903 | 4_2:+46055879 | Msa0602440:three_prime_UTR |
| TTAGTTGATACCAATGGAGC+AGG | 0.536544 | 4_2:+46055522 | Msa0602440:CDS |
| AAAAGTTCAAATACCTCCAT+GGG | 0.539767 | 4_2:-46052741 | None:intergenic |
| TTTGTGTCGTTGGTGGTGAA+AGG | 0.544058 | 4_2:+46054569 | Msa0602440:CDS |
| AAATCCCCGACTAGGGAGAA+GGG | 0.545579 | 4_2:+46055880 | Msa0602440:three_prime_UTR |
| TGTGCTGTTTGTGTCGTTGG+TGG | 0.549931 | 4_2:+46054562 | Msa0602440:CDS |
| CAGCAAATGTTATCATTCAA+AGG | 0.551386 | 4_2:+46055716 | Msa0602440:CDS |
| ATTGAAGAATGTGTGAGAGC+TGG | 0.554569 | 4_2:+46055685 | Msa0602440:CDS |
| AACACTTCTCGCATCAACAA+TGG | 0.556176 | 4_2:+46052905 | Msa0602440:exon |
| AGGGGTGAAGAAGTTGTCGA+GGG | 0.558514 | 4_2:+46055899 | Msa0602440:three_prime_UTR |
| CCGTGTGTGTTGCTCAAGAT+GGG | 0.565237 | 4_2:+46055457 | Msa0602440:CDS |
| CCCATCTTGAGCAACACACA+CGG | 0.565436 | 4_2:-46055457 | None:intergenic |
| GACAGCAGAAATGTCGAGAA+GGG | 0.565725 | 4_2:-46052961 | None:intergenic |
| CGACAGCAGAAATGTCGAGA+AGG | 0.566798 | 4_2:-46052962 | None:intergenic |
| TGAGTTCTTCAAGGATCCAC+AGG | 0.569756 | 4_2:+46055085 | Msa0602440:CDS |
| TTGAAGAATGTGTGAGAGCT+GGG | 0.569874 | 4_2:+46055686 | Msa0602440:CDS |
| CATGAAACTTAAAGGACCCA+TGG | 0.572034 | 4_2:+46052725 | Msa0602440:five_prime_UTR |
| CACATATAAAGGGTGCAGAA+AGG | 0.573702 | 4_2:-46055064 | None:intergenic |
| GAAGACGAGAATACACCTAC+AGG | 0.574426 | 4_2:+46054535 | Msa0602440:CDS |
| ACCAAGAACTCTAAACAAGC+TGG | 0.574572 | 4_2:+46054401 | Msa0602440:CDS |
| TGAAAGAAATCCTCCAACAA+AGG | 0.578951 | 4_2:-46055641 | None:intergenic |
| CCGATGTAACTAGTGGCTCC+GGG | 0.591002 | 4_2:-46054344 | None:intergenic |
| CCCGGAGCCACTAGTTACAT+CGG | 0.598586 | 4_2:+46054344 | Msa0602440:CDS |
| TTACATCGGTTGCATTGGGA+AGG | 0.601422 | 4_2:+46054358 | Msa0602440:CDS |
| CTTTAGGTAATAGAATTACA+GGG | 0.605211 | 4_2:-46055494 | None:intergenic |
| TCACCCCTTCTCCCTAGTCG+GGG | 0.608207 | 4_2:-46055884 | None:intergenic |
| GCATCAACAATGGCTTTGGA+AGG | 0.614210 | 4_2:+46052915 | Msa0602440:exon |
| CAAGATATCCCAGTTGCCAA+AGG | 0.619346 | 4_2:+46055386 | Msa0602440:CDS |
| AAGGATTACCGTTATCACAC+AGG | 0.620728 | 4_2:+46055425 | Msa0602440:CDS |
| AACTAATTGAATGGATTCGG+GGG | 0.625445 | 4_2:-46054923 | None:intergenic |
| AATCCCCGACTAGGGAGAAG+GGG | 0.626089 | 4_2:+46055881 | Msa0602440:three_prime_UTR |
| CCATCTTGAGCAACACACAC+GGG | 0.628074 | 4_2:-46055456 | None:intergenic |
| TGCTACTCAGAATTCAATCA+GGG | 0.630239 | 4_2:+46054199 | Msa0602440:CDS |
| TGGGAAGGACAAGTTTGGCG+AGG | 0.639413 | 4_2:+46054373 | Msa0602440:CDS |
| TTCGAAAGTTCGTGGCTGGG+AGG | 0.641794 | 4_2:+46055248 | Msa0602440:CDS |
| CAACTAATTGAATGGATTCG+GGG | 0.644425 | 4_2:-46054924 | None:intergenic |
| ACATGCAGCTGCAAATAACA+AGG | 0.645685 | 4_2:+46054951 | Msa0602440:CDS |
| ACAGCAGAAATGTCGAGAAG+GGG | 0.652637 | 4_2:-46052960 | None:intergenic |
| CAAACAGCACAAGTTCCTGT+AGG | 0.659898 | 4_2:-46054550 | None:intergenic |
| TGACCAGACCGATAATGTCG+AGG | 0.675199 | 4_2:+46055353 | Msa0602440:intron |
| AATGCAACCGATGTAACTAG+TGG | 0.675466 | 4_2:-46054351 | None:intergenic |
| AGGATTACCGTTATCACACA+GGG | 0.685783 | 4_2:+46055426 | Msa0602440:CDS |
| AACGTGGAGTACATTGCTGG+AGG | 0.692110 | 4_2:+46054082 | Msa0602440:CDS |
| AATGACTGCCAAATATAACG+TGG | 0.704099 | 4_2:+46054066 | Msa0602440:CDS |
| GAAACTTAAAGGACCCATGG+AGG | 0.726980 | 4_2:+46052728 | Msa0602440:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGAACTTTTTTTTTTT+AGG | + | chr4_2:46052751-46052770 | Msa0602440:five_prime_UTR | 10.0% |
| !!! | TTTAAAGTTAAAATGTTTTT+TGG | + | chr4_2:46052783-46052802 | Msa0602440:five_prime_UTR | 10.0% |
| !!! | TTAAAGTTAAAATGTTTTTT+GGG | + | chr4_2:46052784-46052803 | Msa0602440:five_prime_UTR | 10.0% |
| !!! | TTGAATTCTAAAAAAAATAT+CGG | - | chr4_2:46053874-46053893 | None:intergenic | 10.0% |
| !!! | TTTTAAATAAATAGTTGAAA+AGG | + | chr4_2:46054861-46054880 | Msa0602440:intron | 10.0% |
| !! | AAATATTTATTTGAATTTGA+CGG | - | chr4_2:46055138-46055157 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTATTGATTTTTA+AGG | + | chr4_2:46055160-46055179 | Msa0602440:intron | 10.0% |
| !! | TATAATCATATAGAAAAAAT+TGG | - | chr4_2:46056033-46056052 | None:intergenic | 10.0% |
| !!! | ATTTTGATGTAATTATTTCT+TGG | + | chr4_2:46053521-46053540 | Msa0602440:intron | 15.0% |
| !!! | CACTTTTCATTTTTAAATTA+CGG | + | chr4_2:46053606-46053625 | Msa0602440:intron | 15.0% |
| !!! | TACTTTTCCTTTTTAAATTA+CGG | - | chr4_2:46053735-46053754 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTCTTTTTTGC+AGG | + | chr4_2:46054176-46054195 | Msa0602440:intron | 15.0% |
| !! | AACTTATTTATTTAACAACT+AGG | + | chr4_2:46054501-46054520 | Msa0602440:intron | 15.0% |
| !! | GTAAAAAAAATGAATGATTT+GGG | - | chr4_2:46054628-46054647 | None:intergenic | 15.0% |
| !! | TTTAGTTAACATGCTAATTT+AGG | + | chr4_2:46053272-46053291 | Msa0602440:intron | 20.0% |
| !!! | TGTGCTACAATATATATTTT+AGG | + | chr4_2:46053436-46053455 | Msa0602440:intron | 20.0% |
| !! | ATATAGTCCGTAATTTAAAA+AGG | + | chr4_2:46053725-46053744 | Msa0602440:intron | 20.0% |
| !! | AAATAAGTTAATTTCAGAAG+TGG | - | chr4_2:46054490-46054509 | None:intergenic | 20.0% |
| !! | CGTAAAAAAAATGAATGATT+TGG | - | chr4_2:46054629-46054648 | None:intergenic | 20.0% |
| !!! | ATTCATTTTTTTTACGTCTT+TGG | + | chr4_2:46054633-46054652 | Msa0602440:intron | 20.0% |
| !! | ATGTAAAATAAAAACTGCAA+GGG | - | chr4_2:46055299-46055318 | None:intergenic | 20.0% |
| !! | AATGTAAAATAAAAACTGCA+AGG | - | chr4_2:46055300-46055319 | None:intergenic | 20.0% |
| !!! | TTCTTTTGTTTTGTTTTTGT+AGG | + | chr4_2:46055613-46055632 | Msa0602440:intron | 20.0% |
| !! | TTCAAAATAGTAATAGAATC+GGG | - | chr4_2:46055789-46055808 | None:intergenic | 20.0% |
| !! | CTTCAAAATAGTAATAGAAT+CGG | - | chr4_2:46055790-46055809 | None:intergenic | 20.0% |
| !!! | CAAGTGTTTTTTTTCTTATT+TGG | + | chr4_2:46055996-46056015 | Msa0602440:three_prime_UTR | 20.0% |
| !!! | AAGTTTTTTAGGTAACAGAT+AGG | - | chr4_2:46052684-46052703 | None:intergenic | 25.0% |
| ! | CTGTTACCTAAAAAACTTAA+AGG | + | chr4_2:46052686-46052705 | Msa0602440:five_prime_UTR | 25.0% |
| !!! | ATAGGTCCTTTAAGTTTTTT+AGG | - | chr4_2:46052695-46052714 | None:intergenic | 25.0% |
| ! | GTTACAAACATGAAACTTAA+AGG | + | chr4_2:46052717-46052736 | Msa0602440:five_prime_UTR | 25.0% |
| ! | AAGAAGAAGAAGAAGAATAA+TGG | + | chr4_2:46053068-46053087 | Msa0602440:intron | 25.0% |
| !!! | ATTTTGGTAGTTTTAGAGAT+TGG | + | chr4_2:46053383-46053402 | Msa0602440:intron | 25.0% |
| !! | TCAGTTTAGCTTATTTACTT+TGG | + | chr4_2:46053466-46053485 | Msa0602440:intron | 25.0% |
| ! | CATAGATACAAAAACACAAA+GGG | - | chr4_2:46053802-46053821 | None:intergenic | 25.0% |
| ! | TCATAGATACAAAAACACAA+AGG | - | chr4_2:46053803-46053822 | None:intergenic | 25.0% |
| ! | TCTAAAAAAAATATCGGTGT+CGG | - | chr4_2:46053868-46053887 | None:intergenic | 25.0% |
| ! | TTTGTATTTGCTTCTTATAG+TGG | + | chr4_2:46054309-46054328 | Msa0602440:intron | 25.0% |
| ! | AAAAAGATCCTGAATTAAGA+AGG | - | chr4_2:46054787-46054806 | None:intergenic | 25.0% |
| ! | TCATCAAAATGACTAACATT+TGG | + | chr4_2:46054827-46054846 | Msa0602440:intron | 25.0% |
| ! | TCCAGCAATATAGAAATATT+TGG | - | chr4_2:46054887-46054906 | None:intergenic | 25.0% |
| ! | TTGAAGAACTCACATATAAA+GGG | - | chr4_2:46055077-46055096 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGGATTTGCATTC+TGG | + | chr4_2:46055173-46055192 | Msa0602440:intron | 25.0% |
| !!! | TTTTTAAGGATTTGCATTCT+GGG | + | chr4_2:46055174-46055193 | Msa0602440:intron | 25.0% |
| !! | TTTTACTTAATAACTCGTCT+TGG | + | chr4_2:46055318-46055337 | Msa0602440:intron | 25.0% |
| ! | CTTTAGGTAATAGAATTACA+GGG | - | chr4_2:46055497-46055516 | None:intergenic | 25.0% |
| ! | TCTTTAGGTAATAGAATTAC+AGG | - | chr4_2:46055498-46055517 | None:intergenic | 25.0% |
| ! | GTATCAACTAATTTCTCTTT+AGG | - | chr4_2:46055513-46055532 | None:intergenic | 25.0% |
| ! | AGAATCACTTATTGAAAATC+AGG | - | chr4_2:46055766-46055785 | None:intergenic | 25.0% |
| !! | TGTATTTGAAGTCCTAATAT+AGG | + | chr4_2:46055943-46055962 | Msa0602440:three_prime_UTR | 25.0% |
| ! | TAAGAAATGATGCCTATATT+AGG | - | chr4_2:46055958-46055977 | None:intergenic | 25.0% |
| GTTTCATGTTTGTAACAGAT+AGG | - | chr4_2:46052713-46052732 | None:intergenic | 30.0% | |
| AAAAGTTCAAATACCTCCAT+GGG | - | chr4_2:46052744-46052763 | None:intergenic | 30.0% | |
| AAAAAGTTCAAATACCTCCA+TGG | - | chr4_2:46052745-46052764 | None:intergenic | 30.0% | |
| AAATTAAATCTCGTTGTCGT+TGG | + | chr4_2:46052845-46052864 | Msa0602440:five_prime_UTR | 30.0% | |
| !!! | CGAGTTTAGCTTATTGATTT+TGG | + | chr4_2:46053367-46053386 | Msa0602440:intron | 30.0% |
| !!! | TCTTGGCCATTTTTCTATTT+AGG | + | chr4_2:46053538-46053557 | Msa0602440:intron | 30.0% |
| !!! | CTTGGCCATTTTTCTATTTA+GGG | + | chr4_2:46053539-46053558 | Msa0602440:intron | 30.0% |
| ACACACCCTAAATAGAAAAA+TGG | - | chr4_2:46053547-46053566 | None:intergenic | 30.0% | |
| !! | TTTTCTATTTAGGGTGTGTT+TGG | + | chr4_2:46053548-46053567 | Msa0602440:intron | 30.0% |
| ! | AAAAACACAAAGGGTTTGTT+TGG | - | chr4_2:46053793-46053812 | None:intergenic | 30.0% |
| ATGTAATTACAAGTGTCAGT+CGG | + | chr4_2:46053893-46053912 | Msa0602440:intron | 30.0% | |
| GTATGCTAAATTCTTTGTGA+TGG | + | chr4_2:46053969-46053988 | Msa0602440:intron | 30.0% | |
| TATGATTCCACAATCATTTC+AGG | + | chr4_2:46054035-46054054 | Msa0602440:intron | 30.0% | |
| AATGTACTCCACGTTATATT+TGG | - | chr4_2:46054077-46054096 | None:intergenic | 30.0% | |
| TCTTTAGATTATTGCGTTTC+TGG | + | chr4_2:46054122-46054141 | Msa0602440:intron | 30.0% | |
| CTTTAGATTATTGCGTTTCT+GGG | + | chr4_2:46054123-46054142 | Msa0602440:intron | 30.0% | |
| ! | AATTTCAGAAGTGGATTCTA+CGG | - | chr4_2:46054481-46054500 | None:intergenic | 30.0% |
| ! | ATTTGGGCATTTAAAACACA+AGG | - | chr4_2:46054612-46054631 | None:intergenic | 30.0% |
| CAAAAAGGTTTCAAAGAACT+GGG | - | chr4_2:46054673-46054692 | None:intergenic | 30.0% | |
| TCAAAAAGGTTTCAAAGAAC+TGG | - | chr4_2:46054674-46054693 | None:intergenic | 30.0% | |
| !! | AAACCTTTTTGATTGCATGT+AGG | + | chr4_2:46054682-46054701 | Msa0602440:intron | 30.0% |
| ATTTGAAGAAACCCGAAAAT+TGG | + | chr4_2:46054751-46054770 | Msa0602440:CDS | 30.0% | |
| TTTGAAGAAACCCGAAAATT+GGG | + | chr4_2:46054752-46054771 | Msa0602440:CDS | 30.0% | |
| ATTAGGTACCTTCTTAATTC+AGG | + | chr4_2:46054776-46054795 | Msa0602440:intron | 30.0% | |
| ! | GCCAAATATTTCTATATTGC+TGG | + | chr4_2:46054883-46054902 | Msa0602440:CDS | 30.0% |
| ! | AGCAACTAATTGAATGGATT+CGG | - | chr4_2:46054929-46054948 | None:intergenic | 30.0% |
| ATGTTCAGCAACTAATTGAA+TGG | - | chr4_2:46054935-46054954 | None:intergenic | 30.0% | |
| ATCAAATACTTCTAGCAGAA+AGG | - | chr4_2:46055003-46055022 | None:intergenic | 30.0% | |
| CTTGAAGAACTCACATATAA+AGG | - | chr4_2:46055078-46055097 | None:intergenic | 30.0% | |
| CTTTATATGTGAGTTCTTCA+AGG | + | chr4_2:46055076-46055095 | Msa0602440:CDS | 30.0% | |
| ! | AGGTATATGGACTATGTATT+TGG | + | chr4_2:46055201-46055220 | Msa0602440:intron | 30.0% |
| ! | GAGAAATTAGTTGATACCAA+TGG | + | chr4_2:46055516-46055535 | Msa0602440:CDS | 30.0% |
| TTCCACTTCAAAAAGCAATA+GGG | - | chr4_2:46055553-46055572 | None:intergenic | 30.0% | |
| ATTCCACTTCAAAAAGCAAT+AGG | - | chr4_2:46055554-46055573 | None:intergenic | 30.0% | |
| !!! | TTGCTTTTTGAAGTGGAATA+TGG | + | chr4_2:46055555-46055574 | Msa0602440:intron | 30.0% |
| CAGCAAATGTTATCATTCAA+AGG | + | chr4_2:46055716-46055735 | Msa0602440:CDS | 30.0% | |
| AATGTTATCATTCAAAGGTC+CGG | + | chr4_2:46055721-46055740 | Msa0602440:CDS | 30.0% | |
| ATTAATAGTTGCACTCTAAC+TGG | + | chr4_2:46055841-46055860 | Msa0602440:three_prime_UTR | 30.0% | |
| !!! | TTTTTTAAAAATCCCCGACT+AGG | + | chr4_2:46055872-46055891 | Msa0602440:three_prime_UTR | 30.0% |
| !! | TTTTTAAAAATCCCCGACTA+GGG | + | chr4_2:46055873-46055892 | Msa0602440:three_prime_UTR | 30.0% |
| AACTAAGATGACAAACAGAT+AGG | - | chr4_2:46056104-46056123 | None:intergenic | 30.0% | |
| !!! | TGCTTGTTTTGGTTGTTTAC+AGG | + | chr4_2:46053138-46053157 | Msa0602440:intron | 35.0% |
| !! | TTGAGTCTTGTTTGCTATCA+AGG | + | chr4_2:46053493-46053512 | Msa0602440:intron | 35.0% |
| TTGGATTGAGGGTTTATGAA+GGG | - | chr4_2:46053774-46053793 | None:intergenic | 35.0% | |
| TTTGGATTGAGGGTTTATGA+AGG | - | chr4_2:46053775-46053794 | None:intergenic | 35.0% | |
| ! | AAAGGGTTTGTTTGGATTGA+GGG | - | chr4_2:46053785-46053804 | None:intergenic | 35.0% |
| CATCATACCTGAAATGATTG+TGG | - | chr4_2:46054045-46054064 | None:intergenic | 35.0% | |
| AATGACTGCCAAATATAACG+TGG | + | chr4_2:46054066-46054085 | Msa0602440:CDS | 35.0% | |
| TGCTACTCAGAATTCAATCA+GGG | + | chr4_2:46054199-46054218 | Msa0602440:CDS | 35.0% | |
| TGACCTACATGCAATCAAAA+AGG | - | chr4_2:46054688-46054707 | None:intergenic | 35.0% | |
| ! | AACTAATTGAATGGATTCGG+GGG | - | chr4_2:46054926-46054945 | None:intergenic | 35.0% |
| ! | CAACTAATTGAATGGATTCG+GGG | - | chr4_2:46054927-46054946 | None:intergenic | 35.0% |
| ! | GCAACTAATTGAATGGATTC+GGG | - | chr4_2:46054928-46054947 | None:intergenic | 35.0% |
| ATACTTCTAGCAGAAAGGTT+AGG | - | chr4_2:46054998-46055017 | None:intergenic | 35.0% | |
| CATCATGAAAATCTGCACAA+GGG | - | chr4_2:46055042-46055061 | None:intergenic | 35.0% | |
| TCATCATGAAAATCTGCACA+AGG | - | chr4_2:46055043-46055062 | None:intergenic | 35.0% | |
| TTATTTGAATTTGACGGCGA+AGG | - | chr4_2:46055132-46055151 | None:intergenic | 35.0% | |
| TGAAAGAAATCCTCCAACAA+AGG | - | chr4_2:46055644-46055663 | None:intergenic | 35.0% | |
| TGGAGGATTTCTTTCACAAT+TGG | + | chr4_2:46055648-46055667 | Msa0602440:CDS | 35.0% | |
| ATTTCTTTCACAATTGGTCC+AGG | + | chr4_2:46055654-46055673 | Msa0602440:CDS | 35.0% | |
| ATTCTTCAATAGGTTTCTCC+TGG | - | chr4_2:46055675-46055694 | None:intergenic | 35.0% | |
| ATTGAAAATCAGGCTTCTCT+GGG | - | chr4_2:46055756-46055775 | None:intergenic | 35.0% | |
| TATTGAAAATCAGGCTTCTC+TGG | - | chr4_2:46055757-46055776 | None:intergenic | 35.0% | |
| CATGAAACTTAAAGGACCCA+TGG | + | chr4_2:46052725-46052744 | Msa0602440:five_prime_UTR | 40.0% | |
| AACACTTCTCGCATCAACAA+TGG | + | chr4_2:46052905-46052924 | Msa0602440:exon | 40.0% | |
| !! | GAAGGTGTTCTTCTTGGTAT+GGG | + | chr4_2:46052933-46052952 | Msa0602440:CDS | 40.0% |
| ! | TCTCATGCTTCTGCTTGTTT+TGG | + | chr4_2:46053127-46053146 | Msa0602440:intron | 40.0% |
| CGAGAATAGCATTGTTCAAC+TGG | - | chr4_2:46053172-46053191 | None:intergenic | 40.0% | |
| ! | CTATTTAGGGTGTGTTTGGA+TGG | + | chr4_2:46053552-46053571 | Msa0602440:intron | 40.0% |
| TTGAGGGTTTATGAAGGGAA+GGG | - | chr4_2:46053769-46053788 | None:intergenic | 40.0% | |
| ATTGAGGGTTTATGAAGGGA+AGG | - | chr4_2:46053770-46053789 | None:intergenic | 40.0% | |
| ! | CAAAGGGTTTGTTTGGATTG+AGG | - | chr4_2:46053786-46053805 | None:intergenic | 40.0% |
| TGAAGCACAAACATAGACAC+CGG | + | chr4_2:46053820-46053839 | Msa0602440:intron | 40.0% | |
| ! | GCACTGACAATTATGACTGA+AGG | - | chr4_2:46053938-46053957 | None:intergenic | 40.0% |
| TATAACGTGGAGTACATTGC+TGG | + | chr4_2:46054079-46054098 | Msa0602440:CDS | 40.0% | |
| ! | AGATTATTGCGTTTCTGGGA+AGG | + | chr4_2:46054127-46054146 | Msa0602440:intron | 40.0% |
| ! | GTGCTACTCAGAATTCAATC+AGG | + | chr4_2:46054198-46054217 | Msa0602440:CDS | 40.0% |
| AGCTGAATCTTGAGTACTTG+TGG | + | chr4_2:46054269-46054288 | Msa0602440:intron | 40.0% | |
| AATGCAACCGATGTAACTAG+TGG | - | chr4_2:46054354-46054373 | None:intergenic | 40.0% | |
| ! | ACTAGTTACATCGGTTGCAT+TGG | + | chr4_2:46054353-46054372 | Msa0602440:CDS | 40.0% |
| ! | CTAGTTACATCGGTTGCATT+GGG | + | chr4_2:46054354-46054373 | Msa0602440:CDS | 40.0% |
| ACCAAGAACTCTAAACAAGC+TGG | + | chr4_2:46054401-46054420 | Msa0602440:CDS | 40.0% | |
| ! | ACCAGCTTGTTTAGAGTTCT+TGG | - | chr4_2:46054405-46054424 | None:intergenic | 40.0% |
| GCAATTTGCAGCTGATAAGT+TGG | - | chr4_2:46054718-46054737 | None:intergenic | 40.0% | |
| AAACCCGAAAATTGGGCATT+AGG | + | chr4_2:46054759-46054778 | Msa0602440:CDS | 40.0% | |
| ! | GTACCTAATGCCCAATTTTC+GGG | - | chr4_2:46054765-46054784 | None:intergenic | 40.0% |
| ! | GGTACCTAATGCCCAATTTT+CGG | - | chr4_2:46054766-46054785 | None:intergenic | 40.0% |
| ACATGCAGCTGCAAATAACA+AGG | + | chr4_2:46054951-46054970 | Msa0602440:CDS | 40.0% | |
| ! | CACATATAAAGGGTGCAGAA+AGG | - | chr4_2:46055067-46055086 | None:intergenic | 40.0% |
| !! | CATTCTGGGATTCAGGTATA+TGG | + | chr4_2:46055188-46055207 | Msa0602440:intron | 40.0% |
| ! | CGTACATTTTCGAAAGTTCG+TGG | + | chr4_2:46055240-46055259 | Msa0602440:CDS | 40.0% |
| ! | ATTTTCGAAAGTTCGTGGCT+GGG | + | chr4_2:46055245-46055264 | Msa0602440:CDS | 40.0% |
| AGCTATCTCCTCGACATTAT+CGG | - | chr4_2:46055364-46055383 | None:intergenic | 40.0% | |
| AAGGATTACCGTTATCACAC+AGG | + | chr4_2:46055425-46055444 | Msa0602440:CDS | 40.0% | |
| AGGATTACCGTTATCACACA+GGG | + | chr4_2:46055426-46055445 | Msa0602440:CDS | 40.0% | |
| ! | TTAGTTGATACCAATGGAGC+AGG | + | chr4_2:46055522-46055541 | Msa0602440:CDS | 40.0% |
| !!! | TGCCCTATTGCTTTTTGAAG+TGG | + | chr4_2:46055548-46055567 | Msa0602440:intron | 40.0% |
| TTTGTAGGAGATGCCTTTGT+TGG | + | chr4_2:46055628-46055647 | Msa0602440:intron | 40.0% | |
| GCTCTCACACATTCTTCAAT+AGG | - | chr4_2:46055685-46055704 | None:intergenic | 40.0% | |
| ATTGAAGAATGTGTGAGAGC+TGG | + | chr4_2:46055685-46055704 | Msa0602440:CDS | 40.0% | |
| TTGAAGAATGTGTGAGAGCT+GGG | + | chr4_2:46055686-46055705 | Msa0602440:CDS | 40.0% | |
| !! | AGTTGCACTCTAACTGGTTT+TGG | + | chr4_2:46055847-46055866 | Msa0602440:three_prime_UTR | 40.0% |
| GAAACTTAAAGGACCCATGG+AGG | + | chr4_2:46052728-46052747 | Msa0602440:five_prime_UTR | 45.0% | |
| TCTCGCATCAACAATGGCTT+TGG | + | chr4_2:46052911-46052930 | Msa0602440:exon | 45.0% | |
| !! | GCATCAACAATGGCTTTGGA+AGG | + | chr4_2:46052915-46052934 | Msa0602440:exon | 45.0% |
| !! | GCTTTGGAAGGTGTTCTTCT+TGG | + | chr4_2:46052927-46052946 | Msa0602440:CDS | 45.0% |
| !! | GGAAGGTGTTCTTCTTGGTA+TGG | + | chr4_2:46052932-46052951 | Msa0602440:CDS | 45.0% |
| ACAGCAGAAATGTCGAGAAG+GGG | - | chr4_2:46052963-46052982 | None:intergenic | 45.0% | |
| GACAGCAGAAATGTCGAGAA+GGG | - | chr4_2:46052964-46052983 | None:intergenic | 45.0% | |
| ! | TTTAGGGTGTGTTTGGATGG+AGG | + | chr4_2:46053555-46053574 | Msa0602440:intron | 45.0% |
| TTAGGGTGTGTTTGGATGGA+GGG | + | chr4_2:46053556-46053575 | Msa0602440:intron | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | + | chr4_2:46053562-46053581 | Msa0602440:intron | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | + | chr4_2:46053566-46053585 | Msa0602440:intron | 45.0% | |
| GAATTCAATCAGGGTTGCTC+AGG | + | chr4_2:46054208-46054227 | Msa0602440:CDS | 45.0% | |
| ! | TAGTGGTTGCTTCAAGTTCC+CGG | + | chr4_2:46054326-46054345 | Msa0602440:intron | 45.0% |
| ! | TTACATCGGTTGCATTGGGA+AGG | + | chr4_2:46054358-46054377 | Msa0602440:CDS | 45.0% |
| TGCATTGGGAAGGACAAGTT+TGG | + | chr4_2:46054368-46054387 | Msa0602440:CDS | 45.0% | |
| GAAGACGAGAATACACCTAC+AGG | + | chr4_2:46054535-46054554 | Msa0602440:CDS | 45.0% | |
| CAAACAGCACAAGTTCCTGT+AGG | - | chr4_2:46054553-46054572 | None:intergenic | 45.0% | |
| !! | ACTTGTGCTGTTTGTGTCGT+TGG | + | chr4_2:46054559-46054578 | Msa0602440:CDS | 45.0% |
| !! | TTTGTGTCGTTGGTGGTGAA+AGG | + | chr4_2:46054569-46054588 | Msa0602440:CDS | 45.0% |
| TGAGTTCTTCAAGGATCCAC+AGG | + | chr4_2:46055085-46055104 | Msa0602440:CDS | 45.0% | |
| TTGACGGCGAAGGATTCTTA+CGG | - | chr4_2:46055122-46055141 | None:intergenic | 45.0% | |
| !! | GGATTTGCATTCTGGGATTC+AGG | + | chr4_2:46055181-46055200 | Msa0602440:intron | 45.0% |
| ! | CATTTTCGAAAGTTCGTGGC+TGG | + | chr4_2:46055244-46055263 | Msa0602440:CDS | 45.0% |
| CAAGATATCCCAGTTGCCAA+AGG | + | chr4_2:46055386-46055405 | Msa0602440:CDS | 45.0% | |
| TTGTGTGTTCCTGATGCCTT+TGG | - | chr4_2:46055405-46055424 | None:intergenic | 45.0% | |
| AGGCATCAGGAACACACAAA+AGG | + | chr4_2:46055406-46055425 | Msa0602440:CDS | 45.0% | |
| ATCAGCACCCTGTGTGATAA+CGG | - | chr4_2:46055436-46055455 | None:intergenic | 45.0% | |
| CGACAGCAGAAATGTCGAGA+AGG | - | chr4_2:46052965-46052984 | None:intergenic | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | + | chr4_2:46053565-46053584 | Msa0602440:intron | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | + | chr4_2:46053567-46053586 | Msa0602440:intron | 50.0% | |
| GGTTTATGAAGGGAAGGGAG+GGG | - | chr4_2:46053764-46053783 | None:intergenic | 50.0% | |
| GGGTTTATGAAGGGAAGGGA+GGG | - | chr4_2:46053765-46053784 | None:intergenic | 50.0% | |
| AGGGTTTATGAAGGGAAGGG+AGG | - | chr4_2:46053766-46053785 | None:intergenic | 50.0% | |
| GAGTGTCAGTGTTAGTGTCG+TGG | - | chr4_2:46053846-46053865 | None:intergenic | 50.0% | |
| AACGTGGAGTACATTGCTGG+AGG | + | chr4_2:46054082-46054101 | Msa0602440:CDS | 50.0% | |
| ACCGATGTAACTAGTGGCTC+CGG | - | chr4_2:46054348-46054367 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGATTCTACGGTC+TGG | - | chr4_2:46054476-46054495 | None:intergenic | 50.0% |
| !! | TGTGCTGTTTGTGTCGTTGG+TGG | + | chr4_2:46054562-46054581 | Msa0602440:CDS | 50.0% |
| TACGGAAGAGCTTTCTCCTG+TGG | - | chr4_2:46055104-46055123 | None:intergenic | 50.0% | |
| TGACCAGACCGATAATGTCG+AGG | + | chr4_2:46055353-46055372 | Msa0602440:intron | 50.0% | |
| TCTCCTCGACATTATCGGTC+TGG | - | chr4_2:46055359-46055378 | None:intergenic | 50.0% | |
| TCCTGATGCCTTTGGCAACT+GGG | - | chr4_2:46055397-46055416 | None:intergenic | 50.0% | |
| TTCCTGATGCCTTTGGCAAC+TGG | - | chr4_2:46055398-46055417 | None:intergenic | 50.0% | |
| CCATCTTGAGCAACACACAC+GGG | - | chr4_2:46055459-46055478 | None:intergenic | 50.0% | |
| CCCATCTTGAGCAACACACA+CGG | - | chr4_2:46055460-46055479 | None:intergenic | 50.0% | |
| ! | CCGTGTGTGTTGCTCAAGAT+GGG | + | chr4_2:46055457-46055476 | Msa0602440:CDS | 50.0% |
| ! | TAGGGCATTACCTGCTCCAT+TGG | - | chr4_2:46055535-46055554 | None:intergenic | 50.0% |
| GTAGGAGATGCCTTTGTTGG+AGG | + | chr4_2:46055631-46055650 | Msa0602440:intron | 50.0% | |
| AAAATCCCCGACTAGGGAGA+AGG | + | chr4_2:46055879-46055898 | Msa0602440:three_prime_UTR | 50.0% | |
| AAATCCCCGACTAGGGAGAA+GGG | + | chr4_2:46055880-46055899 | Msa0602440:three_prime_UTR | 50.0% | |
| AAGGGGTGAAGAAGTTGTCG+AGG | + | chr4_2:46055898-46055917 | Msa0602440:three_prime_UTR | 50.0% | |
| AGGGGTGAAGAAGTTGTCGA+GGG | + | chr4_2:46055899-46055918 | Msa0602440:three_prime_UTR | 50.0% | |
| ATGGAGGGTTTAGGAGGGGA+AGG | + | chr4_2:46053571-46053590 | Msa0602440:intron | 55.0% | |
| TGGAGGGTTTAGGAGGGGAA+GGG | + | chr4_2:46053572-46053591 | Msa0602440:intron | 55.0% | |
| GTCAGTGTTAGTGTCGTGGC+CGG | - | chr4_2:46053842-46053861 | None:intergenic | 55.0% | |
| !! | GTCAGTCGGTGTCAGACATC+TGG | + | chr4_2:46053907-46053926 | Msa0602440:intron | 55.0% |
| CCGATGTAACTAGTGGCTCC+GGG | - | chr4_2:46054347-46054366 | None:intergenic | 55.0% | |
| CCCGGAGCCACTAGTTACAT+CGG | + | chr4_2:46054344-46054363 | Msa0602440:CDS | 55.0% | |
| TGGGAAGGACAAGTTTGGCG+AGG | + | chr4_2:46054373-46054392 | Msa0602440:CDS | 55.0% | |
| !! | CGTTGGTGGTGAAAGGTGAG+AGG | + | chr4_2:46054576-46054595 | Msa0602440:intron | 55.0% |
| TTCGAAAGTTCGTGGCTGGG+AGG | + | chr4_2:46055248-46055267 | Msa0602440:CDS | 55.0% | |
| !! | TCCCAGTTGCCAAAGGCATC+AGG | + | chr4_2:46055393-46055412 | Msa0602440:CDS | 55.0% |
| ! | CCCGTGTGTGTTGCTCAAGA+TGG | + | chr4_2:46055456-46055475 | Msa0602440:CDS | 55.0% |
| CTTCTCTGGGTAAGTGCAGC+CGG | - | chr4_2:46055743-46055762 | None:intergenic | 55.0% | |
| AATCCCCGACTAGGGAGAAG+GGG | + | chr4_2:46055881-46055900 | Msa0602440:three_prime_UTR | 55.0% | |
| TTCACCCCTTCTCCCTAGTC+GGG | - | chr4_2:46055888-46055907 | None:intergenic | 55.0% | |
| CTTCACCCCTTCTCCCTAGT+CGG | - | chr4_2:46055889-46055908 | None:intergenic | 55.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr4_2:46053575-46053594 | Msa0602440:intron | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | + | chr4_2:46053576-46053595 | Msa0602440:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr4_2:46053577-46053596 | Msa0602440:intron | 60.0% | |
| TCACCCCTTCTCCCTAGTCG+GGG | - | chr4_2:46055887-46055906 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 46052658 | 46056163 | 46052658 | ID=Msa0602440;Name=Msa0602440 |
| chr4_2 | mRNA | 46052658 | 46056163 | 46052658 | ID=Msa0602440-mRNA-1;Parent=Msa0602440;Name=Msa0602440-mRNA-1;_AED=0.15;_eAED=0.15;_QI=266|1|1|1|0.84|0.78|14|342|341 |
| chr4_2 | exon | 46052658 | 46053006 | 46052658 | ID=Msa0602440-mRNA-1:exon:10354;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46053160 | 46053213 | 46053160 | ID=Msa0602440-mRNA-1:exon:10355;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46054057 | 46054103 | 46054057 | ID=Msa0602440-mRNA-1:exon:10356;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46054198 | 46054229 | 46054198 | ID=Msa0602440-mRNA-1:exon:10357;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46054329 | 46054430 | 46054329 | ID=Msa0602440-mRNA-1:exon:10358;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46054523 | 46054590 | 46054523 | ID=Msa0602440-mRNA-1:exon:10359;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46054704 | 46054780 | 46054704 | ID=Msa0602440-mRNA-1:exon:10360;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46054875 | 46054972 | 46054875 | ID=Msa0602440-mRNA-1:exon:10361;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46055050 | 46055120 | 46055050 | ID=Msa0602440-mRNA-1:exon:10362;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46055203 | 46055269 | 46055203 | ID=Msa0602440-mRNA-1:exon:10363;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46055360 | 46055543 | 46055360 | ID=Msa0602440-mRNA-1:exon:10364;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46055635 | 46056025 | 46055635 | ID=Msa0602440-mRNA-1:exon:10365;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46056046 | 46056083 | 46056046 | ID=Msa0602440-mRNA-1:exon:10366;Parent=Msa0602440-mRNA-1 |
| chr4_2 | exon | 46056108 | 46056163 | 46056108 | ID=Msa0602440-mRNA-1:exon:10367;Parent=Msa0602440-mRNA-1 |
| chr4_2 | five_prime_UTR | 46052658 | 46052923 | 46052658 | ID=Msa0602440-mRNA-1:five_prime_utr;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46052924 | 46053006 | 46052924 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46053160 | 46053213 | 46053160 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46054057 | 46054103 | 46054057 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46054198 | 46054229 | 46054198 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46054329 | 46054430 | 46054329 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46054523 | 46054590 | 46054523 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46054704 | 46054780 | 46054704 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46054875 | 46054972 | 46054875 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46055050 | 46055120 | 46055050 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46055203 | 46055269 | 46055203 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46055360 | 46055543 | 46055360 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | CDS | 46055635 | 46055777 | 46055635 | ID=Msa0602440-mRNA-1:cds;Parent=Msa0602440-mRNA-1 |
| chr4_2 | three_prime_UTR | 46055778 | 46056025 | 46055778 | ID=Msa0602440-mRNA-1:three_prime_utr;Parent=Msa0602440-mRNA-1 |
| chr4_2 | three_prime_UTR | 46056046 | 46056083 | 46056046 | ID=Msa0602440-mRNA-1:three_prime_utr;Parent=Msa0602440-mRNA-1 |
| chr4_2 | three_prime_UTR | 46056108 | 46056163 | 46056108 | ID=Msa0602440-mRNA-1:three_prime_utr;Parent=Msa0602440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
