AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0602450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602450 MtrunA17_Chr4g0030051 98.270 289 5 0 1 289 1 289 0.0 594
Msa0602450 MtrunA17_Chr2g0326001 54.485 301 82 15 19 289 18 293 1.83e-85 258
Msa0602450 MtrunA17_Chr3g0117601 34.125 337 143 14 2 289 28 334 1.13e-35 130
Msa0602450 MtrunA17_Chr3g0127201 76.471 68 16 0 30 97 16 83 5.23e-34 125
Msa0602450 MtrunA17_Chr4g0031411 66.304 92 26 2 25 111 58 149 1.06e-33 125
Msa0602450 MtrunA17_Chr1g0188851 56.701 97 38 1 3 95 1 97 1.22e-33 124
Msa0602450 MtrunA17_Chr8g0341671 70.270 74 22 0 29 102 8 81 4.19e-32 118
Msa0602450 MtrunA17_Chr3g0126201 64.706 85 30 0 15 99 25 109 4.73e-32 121
Msa0602450 MtrunA17_Chr2g0328021 70.423 71 20 1 26 96 48 117 8.88e-32 119
Msa0602450 MtrunA17_Chr4g0010151 66.250 80 26 1 17 95 57 136 1.02e-31 120
Msa0602450 MtrunA17_Chr4g0047001 59.596 99 30 2 42 130 56 154 1.21e-31 120
Msa0602450 MtrunA17_Chr8g0346551 66.234 77 24 1 23 99 8 82 1.82e-31 118
Msa0602450 MtrunA17_Chr7g0237921 68.831 77 23 1 20 95 54 130 6.28e-31 118
Msa0602450 MtrunA17_Chr1g0177251 67.949 78 22 1 43 117 14 91 7.26e-31 117
Msa0602450 MtrunA17_Chr2g0282441 85.965 57 6 1 36 92 22 76 8.10e-31 117
Msa0602450 MtrunA17_Chr8g0374251 82.143 56 10 0 39 94 66 121 1.39e-30 117
Msa0602450 MtrunA17_Chr8g0367161 61.538 78 30 0 37 114 28 105 1.86e-30 117
Msa0602450 MtrunA17_Chr7g0223311 72.857 70 18 1 40 108 76 145 1.67e-29 115
Msa0602450 MtrunA17_Chr5g0411951 80.702 57 10 1 35 91 38 93 2.91e-29 113
Msa0602450 MtrunA17_Chr4g0061761 86.792 53 7 0 39 91 38 90 3.39e-29 113
Msa0602450 MtrunA17_Chr8g0374111 70.588 68 18 1 32 97 18 85 3.40e-29 110
Msa0602450 MtrunA17_Chr2g0282511 90.000 50 5 0 40 89 44 93 4.24e-28 110
Msa0602450 MtrunA17_Chr2g0282051 60.465 86 31 2 10 95 17 99 2.16e-27 107
Msa0602450 MtrunA17_Chr2g0308011 88.000 50 6 0 40 89 36 85 2.89e-27 105
Msa0602450 MtrunA17_Chr4g0047761 80.702 57 10 1 39 95 70 125 1.53e-26 105
Msa0602450 MtrunA17_Chr3g0092111 66.197 71 23 1 29 99 125 194 9.31e-26 105
Msa0602450 MtrunA17_Chr7g0217581 67.143 70 22 1 29 98 221 289 1.24e-25 106
Msa0602450 MtrunA17_Chr5g0417571 59.740 77 30 1 29 105 127 202 3.45e-25 102
Msa0602450 MtrunA17_Chr6g0460731 51.042 96 45 2 4 98 59 153 3.48e-25 103
Msa0602450 MtrunA17_Chr6g0460721 48.315 89 45 1 10 98 59 146 5.65e-25 102
Msa0602450 MtrunA17_Chr6g0453321 52.174 92 43 1 7 98 103 193 4.58e-24 101
Msa0602450 MtrunA17_Chr7g0254161 60.563 71 27 1 28 98 89 158 5.63e-24 100
Msa0602450 MtrunA17_Chr4g0042481 54.321 81 33 1 19 99 104 180 7.12e-24 100
Msa0602450 MtrunA17_Chr8g0355261 60.294 68 26 1 29 96 107 173 2.42e-23 99.0
Msa0602450 MtrunA17_Chr2g0283811 67.857 56 18 0 39 94 45 100 7.26e-23 92.4
Msa0602450 MtrunA17_Chr5g0417551 59.211 76 27 1 25 100 115 186 4.78e-22 94.7
Msa0602450 MtrunA17_Chr5g0417561 59.211 76 27 1 25 100 107 178 6.48e-22 94.0
Msa0602450 MtrunA17_Chr5g0417601 58.571 70 28 1 25 94 125 193 9.62e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602450 AT2G28510.1 41.083 314 122 11 10 289 4 288 5.57e-55 180
Msa0602450 AT5G60200.1 39.407 236 82 7 25 255 40 219 8.78e-42 145
Msa0602450 AT3G45610.1 49.057 159 58 5 1 149 11 156 5.96e-39 137
Msa0602450 AT1G51700.1 63.158 95 31 2 21 114 16 107 1.13e-34 124
Msa0602450 AT3G55370.3 71.429 77 21 1 25 100 104 180 6.04e-33 124
Msa0602450 AT3G55370.1 71.429 77 21 1 25 100 59 135 7.76e-33 123
Msa0602450 AT3G55370.2 71.429 77 21 1 25 100 59 135 1.28e-32 123
Msa0602450 AT5G02460.1 73.611 72 18 1 25 95 78 149 4.42e-32 122
Msa0602450 AT1G21340.1 65.116 86 18 1 40 113 37 122 6.74e-32 119
Msa0602450 AT1G07640.2 65.823 79 26 1 18 95 53 131 1.50e-31 120
Msa0602450 AT5G60850.1 72.000 75 19 1 39 111 49 123 1.69e-31 119
Msa0602450 AT3G52440.1 59.574 94 33 1 43 136 27 115 1.95e-31 117
Msa0602450 AT1G07640.3 65.823 79 26 1 18 95 61 139 1.97e-31 120
Msa0602450 AT4G24060.1 72.727 66 18 0 30 95 42 107 1.99e-31 120
Msa0602450 AT3G52440.2 59.574 94 33 1 43 136 46 134 2.33e-31 118
Msa0602450 AT3G61850.2 52.066 121 52 3 27 147 49 163 2.66e-31 118
Msa0602450 AT3G61850.3 52.066 121 52 3 27 147 49 163 2.66e-31 118
Msa0602450 AT3G61850.1 52.066 121 52 3 27 147 61 175 3.49e-31 118
Msa0602450 AT3G61850.5 52.066 121 52 3 27 147 49 163 3.63e-31 118
Msa0602450 AT3G61850.4 52.066 121 52 3 27 147 61 175 4.77e-31 118
Msa0602450 AT2G37590.1 67.123 73 23 1 25 96 72 144 5.79e-31 118
Msa0602450 AT1G07640.1 69.444 72 21 1 25 95 4 75 6.92e-31 117
Msa0602450 AT2G28810.2 71.642 67 18 1 26 92 63 128 7.31e-31 118
Msa0602450 AT2G28810.1 71.642 67 18 1 26 92 80 145 1.24e-30 117
Msa0602450 AT5G65590.1 80.328 61 12 0 41 101 41 101 1.56e-30 117
Msa0602450 AT5G62940.1 77.049 61 14 0 31 91 63 123 1.77e-30 118
Msa0602450 AT1G28310.1 87.273 55 7 0 41 95 27 81 7.17e-30 115
Msa0602450 AT1G28310.2 87.273 55 7 0 41 95 51 105 1.17e-29 115
Msa0602450 AT3G21270.1 90.566 53 5 0 41 93 29 81 2.89e-29 110
Msa0602450 AT4G38000.1 72.727 66 17 1 30 94 30 95 1.00e-28 110
Msa0602450 AT4G21050.1 69.118 68 21 0 38 105 21 88 1.15e-28 109
Msa0602450 AT3G50410.1 72.308 65 18 0 33 97 22 86 2.15e-28 109
Msa0602450 AT5G66940.1 61.905 84 25 2 37 113 28 111 5.03e-28 108
Msa0602450 AT4G00940.1 80.702 57 11 0 39 95 66 122 5.11e-28 109
Msa0602450 AT4G00940.3 80.702 57 11 0 39 95 66 122 5.11e-28 109
Msa0602450 AT4G00940.2 80.702 57 11 0 39 95 66 122 5.11e-28 109
Msa0602450 AT1G64620.1 72.131 61 17 0 30 90 38 98 2.42e-27 109
Msa0602450 AT2G46590.1 63.158 76 24 1 13 88 44 115 3.47e-27 108
Msa0602450 AT2G46590.2 63.158 76 24 1 13 88 56 127 4.43e-27 108
Msa0602450 AT1G47655.1 75.439 57 14 0 33 89 21 77 4.39e-26 102
Msa0602450 AT5G62430.1 47.959 98 45 2 3 100 22 113 1.75e-25 103
Msa0602450 AT3G47500.1 52.632 95 41 1 4 98 77 167 1.79e-25 105
Msa0602450 AT5G39660.3 61.333 75 25 1 24 98 125 195 2.42e-24 102
Msa0602450 AT5G39660.1 61.333 75 25 1 24 98 125 195 2.42e-24 102
Msa0602450 AT5G39660.2 61.333 75 25 1 24 98 125 195 2.42e-24 102
Msa0602450 AT1G69570.1 53.488 86 36 1 9 94 104 185 5.66e-24 100
Msa0602450 AT4G21080.1 56.579 76 24 1 43 109 27 102 6.13e-24 97.8
Msa0602450 AT4G21040.1 75.000 52 13 0 43 94 27 78 2.26e-23 95.9
Msa0602450 AT1G26790.1 55.263 76 33 1 20 94 89 164 2.72e-23 98.6
Msa0602450 AT2G34140.1 60.000 65 22 1 30 94 51 111 1.60e-22 92.0
Msa0602450 AT1G29160.1 66.071 56 19 0 39 94 60 115 2.68e-22 91.7
Msa0602450 AT4G21030.1 51.471 68 33 0 38 105 18 85 1.20e-15 74.3

Find 104 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTTTGGTTTCCTAAAA+TGG 0.139828 4_2:+46061112 None:intergenic
GGGAAACAAGTGAGTGGATT+TGG 0.231178 4_2:+46061224 None:intergenic
TTAGGGAACAAAATGAAAAT+AGG 0.240393 4_2:-46060848 Msa0602450:CDS
TGGATTCTTCGAAGCACTTA+TGG 0.247834 4_2:-46061036 Msa0602450:CDS
GCTTCTGGTTGAGGAGGTTT+TGG 0.248273 4_2:+46061464 None:intergenic
ATTGCCTTGTCGCACTATTA+AGG 0.253233 4_2:+46060645 None:intergenic
GCAAGTCTTGTAGGAGATAT+TGG 0.255429 4_2:-46061358 Msa0602450:CDS
TCATTACTCTTTCTCTCTCT+TGG 0.271913 4_2:-46062494 Msa0602450:five_prime_UTR
GAATGGTCTCACTTCATCTT+GGG 0.274434 4_2:-46060745 Msa0602450:CDS
GATATTTCTGCAAGTCTTGT+AGG 0.294030 4_2:-46061367 Msa0602450:CDS
GGAATGGTCTCACTTCATCT+TGG 0.324184 4_2:-46060746 Msa0602450:CDS
ATTGTTGTAGTAACAAAATT+TGG 0.325870 4_2:+46061409 None:intergenic
TTTCCATGGCAGTTCAATAA+TGG 0.330980 4_2:-46060813 Msa0602450:CDS
ACACCATACCTTAGTTTGAT+AGG 0.336527 4_2:-46060513 Msa0602450:three_prime_UTR
TGCGGCTGCAATTACGGTTA+TGG 0.348385 4_2:-46060556 Msa0602450:three_prime_UTR
GGAAACAAGTGAGTGGATTT+GGG 0.349121 4_2:+46061225 None:intergenic
CATTACTCTTTCTCTCTCTT+GGG 0.353198 4_2:-46062493 Msa0602450:five_prime_UTR
AACAAGAAATGTGTAATGTT+AGG 0.357073 4_2:-46060866 Msa0602450:CDS
ACGAGACGGTGTCTACATTA+GGG 0.358019 4_2:+46060701 None:intergenic
ATGGCTGAAATGGATCATTT+AGG 0.361202 4_2:-46060780 Msa0602450:CDS
TTATATTGCGGCTGCAATTA+CGG 0.361215 4_2:-46060562 Msa0602450:three_prime_UTR
TGGACTGCAATTTAGAACTA+TGG 0.362313 4_2:-46060536 Msa0602450:three_prime_UTR
TTGATTAAGAAGTGTTTGTA+TGG 0.363457 4_2:-46062277 Msa0602450:exon
AGACACAAATATGGCTGAAA+TGG 0.367887 4_2:-46060790 Msa0602450:CDS
CACGAGACGGTGTCTACATT+AGG 0.377042 4_2:+46060700 None:intergenic
CAATAATGGAGACACAAATA+TGG 0.378026 4_2:-46060799 Msa0602450:CDS
GGATTCTTCGAAGCACTTAT+GGG 0.384728 4_2:-46061035 Msa0602450:CDS
CAAGACTTGCAGAAATATCT+TGG 0.387546 4_2:+46061371 None:intergenic
TAGGGAACAAAATGAAAATA+GGG 0.390383 4_2:-46060847 Msa0602450:CDS
AGGTAAGTAATGAAAATCTA+AGG 0.411275 4_2:+46062443 None:intergenic
TTCTTCTAGTGGACAACAAC+AGG 0.413714 4_2:-46062247 Msa0602450:intron
TGTGAGATCATTGGAATCAT+AGG 0.425382 4_2:+46061193 None:intergenic
GGATTTGGGTTGGTTTGAAA+TGG 0.429582 4_2:+46061239 None:intergenic
GTTGATAATGGCAATGCTAA+TGG 0.432043 4_2:-46060972 Msa0602450:CDS
CGGAATGTTCCTGTTGGTGG+GGG 0.438207 4_2:-46061317 Msa0602450:CDS
TACCACATGAGGTGTTGGTT+TGG 0.441239 4_2:+46061099 None:intergenic
AGCATTAGCTAGGCTTCAAA+AGG 0.442460 4_2:-46061168 Msa0602450:CDS
GCTAACCAAGTCAATGAAGT+TGG 0.443836 4_2:-46060307 Msa0602450:three_prime_UTR
GTTTGAGGAGAGAAAAGAAA+AGG 0.447592 4_2:+46062375 None:intergenic
ACAAGAAATGTGTAATGTTA+GGG 0.450520 4_2:-46060865 Msa0602450:CDS
TACGGAATGTTCCTGTTGGT+GGG 0.452296 4_2:-46061319 Msa0602450:CDS
GAAGAATCCATGGTTGTTTG+AGG 0.461029 4_2:+46061049 None:intergenic
ATGCTCATTTCATGATCATA+AGG 0.463078 4_2:+46060924 None:intergenic
GCAAATGTCTAACCAGTCAT+TGG 0.467897 4_2:-46061528 Msa0602450:CDS
TGTGGTATTCTTAACAATCA+TGG 0.480447 4_2:-46061083 Msa0602450:CDS
CTACGGAATGTTCCTGTTGG+TGG 0.487901 4_2:-46061320 Msa0602450:CDS
AAGAAGTGTTTGTATGGGGA+TGG 0.488483 4_2:-46062271 Msa0602450:exon
ATCCATGGTTGTTTGAGGAA+TGG 0.489166 4_2:+46061054 None:intergenic
AGGCTTCAAAAGGGTCAACT+TGG 0.489311 4_2:-46061158 Msa0602450:CDS
GAGAGAAAAGAAAAGGATAG+AGG 0.489730 4_2:+46062382 None:intergenic
ACAAGTGAGTGGATTTGGGT+TGG 0.491105 4_2:+46061229 None:intergenic
CACCATACCTTAGTTTGATA+GGG 0.494586 4_2:-46060512 Msa0602450:three_prime_UTR
CCGCAATATAAAGATTTAAG+AGG 0.494980 4_2:+46060574 None:intergenic
ATCACTTCCCTATCAAACTA+AGG 0.497359 4_2:+46060505 None:intergenic
AATGGTCTCACTTCATCTTG+GGG 0.497543 4_2:-46060744 Msa0602450:CDS
TGTAGGAGATATTGGACTAA+AGG 0.499003 4_2:-46061350 Msa0602450:CDS
GTGTTGTTTGAGTCACATCT+TGG 0.500769 4_2:+46061431 None:intergenic
TGAATAAGGAAATGAAAGAA+AGG 0.501058 4_2:+46062349 None:intergenic
ATGGATCATTTAGGAAGAGC+TGG 0.502060 4_2:-46060771 Msa0602450:CDS
TAATGCTAGTGTGAGATCAT+TGG 0.503293 4_2:+46061184 None:intergenic
TTGGAATCATAGGACATTGA+AGG 0.508739 4_2:+46061203 None:intergenic
TTAGGAAGAGCTGGTTGGAA+TGG 0.509850 4_2:-46060762 Msa0602450:CDS
TTTGACAATTTAAGGTGCAA+AGG 0.511000 4_2:+46060395 None:intergenic
CCTCTTAAATCTTTATATTG+CGG 0.512201 4_2:-46060574 Msa0602450:three_prime_UTR
TGATTAAGAAGTGTTTGTAT+GGG 0.520497 4_2:-46062276 Msa0602450:exon
AAGAATACCACATGAGGTGT+TGG 0.521494 4_2:+46061094 None:intergenic
TCTCTCCAACTTCATTGACT+TGG 0.524005 4_2:+46060302 None:intergenic
ATGAAAGAAAGGAAAGTTTG+AGG 0.525614 4_2:+46062360 None:intergenic
AATGCTAATGGCAATGCTAA+TGG 0.525828 4_2:-46060960 Msa0602450:CDS
TTCCCTATCAAACTAAGGTA+TGG 0.534249 4_2:+46060510 None:intergenic
GACTAATGCAGTTGCAATTG+CGG 0.539445 4_2:-46060617 Msa0602450:three_prime_UTR
TGCAGAATCTTTACTACATG+GGG 0.546230 4_2:-46060998 Msa0602450:CDS
ATGGGGATGGATTCTTCTAG+TGG 0.553754 4_2:-46062258 Msa0602450:CDS
TTTAGAGCTTCTGGTTGAGG+AGG 0.557206 4_2:+46061458 None:intergenic
TTAACATGCTCTCCAATGAC+TGG 0.564124 4_2:+46061516 None:intergenic
ATCATTTAGGAAGAGCTGGT+TGG 0.573027 4_2:-46060767 Msa0602450:CDS
CGAGACGGTGTCTACATTAG+GGG 0.579103 4_2:+46060702 None:intergenic
TGTGCAGAATCTTTACTACA+TGG 0.579242 4_2:-46061000 Msa0602450:CDS
TGGAATCATAGGACATTGAA+GGG 0.583945 4_2:+46061204 None:intergenic
ATCTCACACTAGCATTAGCT+AGG 0.588061 4_2:-46061178 Msa0602450:CDS
GTGCAGAATCTTTACTACAT+GGG 0.589427 4_2:-46060999 Msa0602450:CDS
ACGGAATGTTCCTGTTGGTG+GGG 0.589815 4_2:-46061318 Msa0602450:CDS
AGTTGCAATTGCGGTTGTGA+TGG 0.595211 4_2:-46060608 Msa0602450:three_prime_UTR
CATCATCAGCTTCATCAAAG+AGG 0.595811 4_2:-46061274 Msa0602450:CDS
AGAAAAGAAAAGGATAGAGG+TGG 0.602521 4_2:+46062385 None:intergenic
AACCAAACCAACACCTCATG+TGG 0.607094 4_2:-46061101 Msa0602450:CDS
AACCATTCCTCAAACAACCA+TGG 0.607175 4_2:-46061056 Msa0602450:CDS
TAAGTGCTTCGAAGAATCCA+TGG 0.607290 4_2:+46061039 None:intergenic
ATGGTCTCACTTCATCTTGG+GGG 0.616298 4_2:-46060743 Msa0602450:CDS
GGACTAAAGGTGGTACACTA+CGG 0.622803 4_2:-46061337 Msa0602450:CDS
GGAATGTTCCTGTTGGTGGG+GGG 0.627797 4_2:-46061316 Msa0602450:CDS
TCTCCATTATTGAACTGCCA+TGG 0.629912 4_2:+46060810 None:intergenic
GCATTAGCTAGGCTTCAAAA+GGG 0.630153 4_2:-46061167 Msa0602450:CDS
GTCGTACAAGATGATGGATG+AGG 0.632055 4_2:+46062532 None:intergenic
GAGACGGTGTCTACATTAGG+GGG 0.640287 4_2:+46060703 None:intergenic
ACACTACGGAATGTTCCTGT+TGG 0.643352 4_2:-46061323 Msa0602450:CDS
ATTGTTAAGAATACCACATG+AGG 0.643870 4_2:+46061088 None:intergenic
AGGAGATATTGGACTAAAGG+TGG 0.646558 4_2:-46061347 Msa0602450:CDS
GATTAAGAAGTGTTTGTATG+GGG 0.649738 4_2:-46062275 Msa0602450:exon
ATTGAAGGGAAACAAGTGAG+TGG 0.662440 4_2:+46061218 None:intergenic
TGATGATGCAAAGTGAAGTG+AGG 0.684560 4_2:+46062423 None:intergenic
TGAACCTTAATAGTGCGACA+AGG 0.723900 4_2:-46060649 Msa0602450:three_prime_UTR
TGATATTTAGAATCACGAGA+CGG 0.729031 4_2:+46060687 None:intergenic
GCAGAATCTTTACTACATGG+GGG 0.765910 4_2:-46060997 Msa0602450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTGTATATATGAATA+AGG + chr4_2:46060523-46060542 None:intergenic 15.0%
!! CAAAAATTAAGGAAAATAAT+AGG + chr4_2:46060772-46060791 None:intergenic 15.0%
!! ATACATAATAAAATTGTAGA+GGG + chr4_2:46060846-46060865 None:intergenic 15.0%
!! TATACATAATAAAATTGTAG+AGG + chr4_2:46060847-46060866 None:intergenic 15.0%
!! TAACATTATGTTTGAATTAA+CGG - chr4_2:46061090-46061109 Msa0602450:CDS 15.0%
!! AACTAAGAAAAATAAAATAG+AGG + chr4_2:46062403-46062422 None:intergenic 15.0%
!!! TTTTTGTGTATATATGAATA+AGG + chr4_2:46060523-46060542 None:intergenic 15.0%
!! CAAAAATTAAGGAAAATAAT+AGG + chr4_2:46060772-46060791 None:intergenic 15.0%
!! ATACATAATAAAATTGTAGA+GGG + chr4_2:46060846-46060865 None:intergenic 15.0%
!! TATACATAATAAAATTGTAG+AGG + chr4_2:46060847-46060866 None:intergenic 15.0%
!! TAACATTATGTTTGAATTAA+CGG - chr4_2:46061090-46061109 Msa0602450:CDS 15.0%
!! AACTAAGAAAAATAAAATAG+AGG + chr4_2:46062403-46062422 None:intergenic 15.0%
!! TCATGTAATATTTATTAACG+TGG - chr4_2:46060674-46060693 Msa0602450:three_prime_UTR 20.0%
!! CAAAGAAGAAACAAAAATTA+AGG + chr4_2:46060783-46060802 None:intergenic 20.0%
!!! ACTAATTTTATTTCATCCAA+GGG + chr4_2:46060813-46060832 None:intergenic 20.0%
!!! TACTAATTTTATTTCATCCA+AGG + chr4_2:46060814-46060833 None:intergenic 20.0%
!! TTCCATCAAATATTAATTCT+AGG + chr4_2:46060920-46060939 None:intergenic 20.0%
!!! TTTACTTTATTTGATCTAGA+GGG + chr4_2:46060997-46061016 None:intergenic 20.0%
!!! TTTTACTTTATTTGATCTAG+AGG + chr4_2:46060998-46061017 None:intergenic 20.0%
!! TCACAAAAATTTGTACTATT+TGG - chr4_2:46061265-46061284 Msa0602450:CDS 20.0%
!! ATTGTTGTAGTAACAAAATT+TGG + chr4_2:46061449-46061468 None:intergenic 20.0%
!!! CACAAAATTTTGACAATTTA+AGG + chr4_2:46062471-46062490 None:intergenic 20.0%
!!! TTTTAATTGGTGAAATGAAT+AGG - chr4_2:46062503-46062522 Msa0602450:five_prime_UTR 20.0%
!! TCATGTAATATTTATTAACG+TGG - chr4_2:46060674-46060693 Msa0602450:three_prime_UTR 20.0%
!! CAAAGAAGAAACAAAAATTA+AGG + chr4_2:46060783-46060802 None:intergenic 20.0%
!!! ACTAATTTTATTTCATCCAA+GGG + chr4_2:46060813-46060832 None:intergenic 20.0%
!!! TACTAATTTTATTTCATCCA+AGG + chr4_2:46060814-46060833 None:intergenic 20.0%
!! TTCCATCAAATATTAATTCT+AGG + chr4_2:46060920-46060939 None:intergenic 20.0%
!!! TTTACTTTATTTGATCTAGA+GGG + chr4_2:46060997-46061016 None:intergenic 20.0%
!!! TTTTACTTTATTTGATCTAG+AGG + chr4_2:46060998-46061017 None:intergenic 20.0%
!! TCACAAAAATTTGTACTATT+TGG - chr4_2:46061265-46061284 Msa0602450:CDS 20.0%
!! ATTGTTGTAGTAACAAAATT+TGG + chr4_2:46061449-46061468 None:intergenic 20.0%
!!! CACAAAATTTTGACAATTTA+AGG + chr4_2:46062471-46062490 None:intergenic 20.0%
!!! TTTTAATTGGTGAAATGAAT+AGG - chr4_2:46062503-46062522 Msa0602450:five_prime_UTR 20.0%
! AGGTAAGTAATGAAAATCTA+AGG + chr4_2:46060415-46060434 None:intergenic 25.0%
! TGAATAAGGAAATGAAAGAA+AGG + chr4_2:46060509-46060528 None:intergenic 25.0%
!!! CTAGAGATAAAAAAGTGTTA+TGG + chr4_2:46060546-46060565 None:intergenic 25.0%
!!! TTGATTAAGAAGTGTTTGTA+TGG - chr4_2:46060578-46060597 Msa0602450:three_prime_UTR 25.0%
!!! TGATTAAGAAGTGTTTGTAT+GGG - chr4_2:46060579-46060598 Msa0602450:three_prime_UTR 25.0%
! GTAGTACTAAAAATTCATGA+AGG + chr4_2:46060729-46060748 None:intergenic 25.0%
!!! CATGAATTTTTAGTACTACT+TGG - chr4_2:46060730-46060749 Msa0602450:CDS 25.0%
! TGTATATACTATACTACTCA+TGG - chr4_2:46060861-46060880 Msa0602450:CDS 25.0%
! ATATTTGATGGAATAAAGTC+AGG - chr4_2:46060927-46060946 Msa0602450:CDS 25.0%
! TATTTGATGGAATAAAGTCA+GGG - chr4_2:46060928-46060947 Msa0602450:CDS 25.0%
!! TTACTTTATTTGATCTAGAG+GGG + chr4_2:46060996-46061015 None:intergenic 25.0%
!! TTATTAATGGATGTACATGT+TGG - chr4_2:46061033-46061052 Msa0602450:CDS 25.0%
!! TATTAATGGATGTACATGTT+GGG - chr4_2:46061034-46061053 Msa0602450:CDS 25.0%
!! GAACATGATTTTTCCATTTT+AGG - chr4_2:46061730-46061749 Msa0602450:intron 25.0%
! AACAAGAAATGTGTAATGTT+AGG - chr4_2:46061989-46062008 Msa0602450:intron 25.0%
! ACAAGAAATGTGTAATGTTA+GGG - chr4_2:46061990-46062009 Msa0602450:intron 25.0%
! TTAGGGAACAAAATGAAAAT+AGG - chr4_2:46062007-46062026 Msa0602450:intron 25.0%
! TAGGGAACAAAATGAAAATA+GGG - chr4_2:46062008-46062027 Msa0602450:intron 25.0%
!!! AATGAAAATAGGGTTTTGTT+AGG - chr4_2:46062018-46062037 Msa0602450:intron 25.0%
! CCTCTTAAATCTTTATATTG+CGG - chr4_2:46062281-46062300 Msa0602450:five_prime_UTR 25.0%
!!! GCTACTAGTGTTTTTTTAAT+TGG - chr4_2:46062490-46062509 Msa0602450:five_prime_UTR 25.0%
! AGGTAAGTAATGAAAATCTA+AGG + chr4_2:46060415-46060434 None:intergenic 25.0%
! TGAATAAGGAAATGAAAGAA+AGG + chr4_2:46060509-46060528 None:intergenic 25.0%
!!! CTAGAGATAAAAAAGTGTTA+TGG + chr4_2:46060546-46060565 None:intergenic 25.0%
!!! TTGATTAAGAAGTGTTTGTA+TGG - chr4_2:46060578-46060597 Msa0602450:three_prime_UTR 25.0%
!!! TGATTAAGAAGTGTTTGTAT+GGG - chr4_2:46060579-46060598 Msa0602450:three_prime_UTR 25.0%
! GTAGTACTAAAAATTCATGA+AGG + chr4_2:46060729-46060748 None:intergenic 25.0%
!!! CATGAATTTTTAGTACTACT+TGG - chr4_2:46060730-46060749 Msa0602450:CDS 25.0%
! TGTATATACTATACTACTCA+TGG - chr4_2:46060861-46060880 Msa0602450:CDS 25.0%
! ATATTTGATGGAATAAAGTC+AGG - chr4_2:46060927-46060946 Msa0602450:CDS 25.0%
! TATTTGATGGAATAAAGTCA+GGG - chr4_2:46060928-46060947 Msa0602450:CDS 25.0%
!! TTACTTTATTTGATCTAGAG+GGG + chr4_2:46060996-46061015 None:intergenic 25.0%
!! TTATTAATGGATGTACATGT+TGG - chr4_2:46061033-46061052 Msa0602450:CDS 25.0%
!! TATTAATGGATGTACATGTT+GGG - chr4_2:46061034-46061053 Msa0602450:CDS 25.0%
!! GAACATGATTTTTCCATTTT+AGG - chr4_2:46061730-46061749 Msa0602450:intron 25.0%
! AACAAGAAATGTGTAATGTT+AGG - chr4_2:46061989-46062008 Msa0602450:intron 25.0%
! ACAAGAAATGTGTAATGTTA+GGG - chr4_2:46061990-46062009 Msa0602450:intron 25.0%
! TTAGGGAACAAAATGAAAAT+AGG - chr4_2:46062007-46062026 Msa0602450:intron 25.0%
! TAGGGAACAAAATGAAAATA+GGG - chr4_2:46062008-46062027 Msa0602450:intron 25.0%
!!! AATGAAAATAGGGTTTTGTT+AGG - chr4_2:46062018-46062037 Msa0602450:intron 25.0%
! CCTCTTAAATCTTTATATTG+CGG - chr4_2:46062281-46062300 Msa0602450:five_prime_UTR 25.0%
!!! GCTACTAGTGTTTTTTTAAT+TGG - chr4_2:46062490-46062509 Msa0602450:five_prime_UTR 25.0%
! AATTTTGTCGTACAAGATGA+TGG + chr4_2:46060332-46060351 None:intergenic 30.0%
ATGAAAGAAAGGAAAGTTTG+AGG + chr4_2:46060498-46060517 None:intergenic 30.0%
!! GATTAAGAAGTGTTTGTATG+GGG - chr4_2:46060580-46060599 Msa0602450:three_prime_UTR 30.0%
AAATTCATGAAGGACAAAGA+TGG + chr4_2:46060719-46060738 None:intergenic 30.0%
GCTATATACATATGGTTCAT+AGG + chr4_2:46060892-46060911 None:intergenic 30.0%
ATGAACCATATGTATATAGC+TGG - chr4_2:46060892-46060911 Msa0602450:CDS 30.0%
TGAACCATATGTATATAGCT+GGG - chr4_2:46060893-46060912 Msa0602450:CDS 30.0%
GGCCTAGAATTAATATTTGA+TGG - chr4_2:46060915-46060934 Msa0602450:CDS 30.0%
GAATCAGAAAAGTTACATTG+TGG - chr4_2:46061124-46061143 Msa0602450:CDS 30.0%
ACACAACACAACAAATTTAG+TGG + chr4_2:46061300-46061319 None:intergenic 30.0%
ATTGTTAAGAATACCACATG+AGG + chr4_2:46061770-46061789 None:intergenic 30.0%
TGTGGTATTCTTAACAATCA+TGG - chr4_2:46061772-46061791 Msa0602450:intron 30.0%
ATGCTCATTTCATGATCATA+AGG + chr4_2:46061934-46061953 None:intergenic 30.0%
! CAATAATGGAGACACAAATA+TGG - chr4_2:46062056-46062075 Msa0602450:intron 30.0%
! TGATATTTAGAATCACGAGA+CGG + chr4_2:46062171-46062190 None:intergenic 30.0%
CCGCAATATAAAGATTTAAG+AGG + chr4_2:46062284-46062303 None:intergenic 30.0%
! TTTGACAATTTAAGGTGCAA+AGG + chr4_2:46062463-46062482 None:intergenic 30.0%
! AATTTTGTCGTACAAGATGA+TGG + chr4_2:46060332-46060351 None:intergenic 30.0%
ATGAAAGAAAGGAAAGTTTG+AGG + chr4_2:46060498-46060517 None:intergenic 30.0%
!! GATTAAGAAGTGTTTGTATG+GGG - chr4_2:46060580-46060599 Msa0602450:three_prime_UTR 30.0%
AAATTCATGAAGGACAAAGA+TGG + chr4_2:46060719-46060738 None:intergenic 30.0%
GCTATATACATATGGTTCAT+AGG + chr4_2:46060892-46060911 None:intergenic 30.0%
ATGAACCATATGTATATAGC+TGG - chr4_2:46060892-46060911 Msa0602450:CDS 30.0%
TGAACCATATGTATATAGCT+GGG - chr4_2:46060893-46060912 Msa0602450:CDS 30.0%
GGCCTAGAATTAATATTTGA+TGG - chr4_2:46060915-46060934 Msa0602450:CDS 30.0%
GAATCAGAAAAGTTACATTG+TGG - chr4_2:46061124-46061143 Msa0602450:CDS 30.0%
ACACAACACAACAAATTTAG+TGG + chr4_2:46061300-46061319 None:intergenic 30.0%
ATTGTTAAGAATACCACATG+AGG + chr4_2:46061770-46061789 None:intergenic 30.0%
TGTGGTATTCTTAACAATCA+TGG - chr4_2:46061772-46061791 Msa0602450:intron 30.0%
ATGCTCATTTCATGATCATA+AGG + chr4_2:46061934-46061953 None:intergenic 30.0%
! CAATAATGGAGACACAAATA+TGG - chr4_2:46062056-46062075 Msa0602450:intron 30.0%
! TGATATTTAGAATCACGAGA+CGG + chr4_2:46062171-46062190 None:intergenic 30.0%
CCGCAATATAAAGATTTAAG+AGG + chr4_2:46062284-46062303 None:intergenic 30.0%
! TTTGACAATTTAAGGTGCAA+AGG + chr4_2:46062463-46062482 None:intergenic 30.0%
TCATTACTCTTTCTCTCTCT+TGG - chr4_2:46060361-46060380 Msa0602450:three_prime_UTR 35.0%
CATTACTCTTTCTCTCTCTT+GGG - chr4_2:46060362-46060381 Msa0602450:three_prime_UTR 35.0%
AGAAAAGAAAAGGATAGAGG+TGG + chr4_2:46060473-46060492 None:intergenic 35.0%
GAGAGAAAAGAAAAGGATAG+AGG + chr4_2:46060476-46060495 None:intergenic 35.0%
GTTTGAGGAGAGAAAAGAAA+AGG + chr4_2:46060483-46060502 None:intergenic 35.0%
ACTACTTGGAAGAATGAACA+AGG - chr4_2:46060744-46060763 Msa0602450:CDS 35.0%
GAACCATATGTATATAGCTG+GGG - chr4_2:46060894-46060913 Msa0602450:CDS 35.0%
TTAGCATCTTCATCTTTGTG+AGG - chr4_2:46060970-46060989 Msa0602450:CDS 35.0%
CAAGACTTGCAGAAATATCT+TGG + chr4_2:46061487-46061506 None:intergenic 35.0%
! GATATTTCTGCAAGTCTTGT+AGG - chr4_2:46061488-46061507 Msa0602450:CDS 35.0%
TGTAGGAGATATTGGACTAA+AGG - chr4_2:46061505-46061524 Msa0602450:CDS 35.0%
TGGAATCATAGGACATTGAA+GGG + chr4_2:46061654-46061673 None:intergenic 35.0%
TTGGAATCATAGGACATTGA+AGG + chr4_2:46061655-46061674 None:intergenic 35.0%
TGTGAGATCATTGGAATCAT+AGG + chr4_2:46061665-46061684 None:intergenic 35.0%
TAATGCTAGTGTGAGATCAT+TGG + chr4_2:46061674-46061693 None:intergenic 35.0%
!! GTTGGTTTGGTTTCCTAAAA+TGG + chr4_2:46061746-46061765 None:intergenic 35.0%
TGTGCAGAATCTTTACTACA+TGG - chr4_2:46061855-46061874 Msa0602450:intron 35.0%
GTGCAGAATCTTTACTACAT+GGG - chr4_2:46061856-46061875 Msa0602450:intron 35.0%
TGCAGAATCTTTACTACATG+GGG - chr4_2:46061857-46061876 Msa0602450:intron 35.0%
!! GTTGATAATGGCAATGCTAA+TGG - chr4_2:46061883-46061902 Msa0602450:intron 35.0%
AATGCTAATGGCAATGCTAA+TGG - chr4_2:46061895-46061914 Msa0602450:intron 35.0%
TTTCCATGGCAGTTCAATAA+TGG - chr4_2:46062042-46062061 Msa0602450:intron 35.0%
AGACACAAATATGGCTGAAA+TGG - chr4_2:46062065-46062084 Msa0602450:intron 35.0%
ATGGCTGAAATGGATCATTT+AGG - chr4_2:46062075-46062094 Msa0602450:intron 35.0%
TTATATTGCGGCTGCAATTA+CGG - chr4_2:46062293-46062312 Msa0602450:five_prime_UTR 35.0%
! TGGACTGCAATTTAGAACTA+TGG - chr4_2:46062319-46062338 Msa0602450:five_prime_UTR 35.0%
! ACACCATACCTTAGTTTGAT+AGG - chr4_2:46062342-46062361 Msa0602450:five_prime_UTR 35.0%
! CACCATACCTTAGTTTGATA+GGG - chr4_2:46062343-46062362 Msa0602450:five_prime_UTR 35.0%
TTCCCTATCAAACTAAGGTA+TGG + chr4_2:46062348-46062367 None:intergenic 35.0%
ATCACTTCCCTATCAAACTA+AGG + chr4_2:46062353-46062372 None:intergenic 35.0%
TCATTACTCTTTCTCTCTCT+TGG - chr4_2:46060361-46060380 Msa0602450:three_prime_UTR 35.0%
CATTACTCTTTCTCTCTCTT+GGG - chr4_2:46060362-46060381 Msa0602450:three_prime_UTR 35.0%
AGAAAAGAAAAGGATAGAGG+TGG + chr4_2:46060473-46060492 None:intergenic 35.0%
GAGAGAAAAGAAAAGGATAG+AGG + chr4_2:46060476-46060495 None:intergenic 35.0%
GTTTGAGGAGAGAAAAGAAA+AGG + chr4_2:46060483-46060502 None:intergenic 35.0%
ACTACTTGGAAGAATGAACA+AGG - chr4_2:46060744-46060763 Msa0602450:CDS 35.0%
GAACCATATGTATATAGCTG+GGG - chr4_2:46060894-46060913 Msa0602450:CDS 35.0%
TTAGCATCTTCATCTTTGTG+AGG - chr4_2:46060970-46060989 Msa0602450:CDS 35.0%
CAAGACTTGCAGAAATATCT+TGG + chr4_2:46061487-46061506 None:intergenic 35.0%
! GATATTTCTGCAAGTCTTGT+AGG - chr4_2:46061488-46061507 Msa0602450:CDS 35.0%
TGTAGGAGATATTGGACTAA+AGG - chr4_2:46061505-46061524 Msa0602450:CDS 35.0%
TGGAATCATAGGACATTGAA+GGG + chr4_2:46061654-46061673 None:intergenic 35.0%
TTGGAATCATAGGACATTGA+AGG + chr4_2:46061655-46061674 None:intergenic 35.0%
TGTGAGATCATTGGAATCAT+AGG + chr4_2:46061665-46061684 None:intergenic 35.0%
TAATGCTAGTGTGAGATCAT+TGG + chr4_2:46061674-46061693 None:intergenic 35.0%
!! GTTGGTTTGGTTTCCTAAAA+TGG + chr4_2:46061746-46061765 None:intergenic 35.0%
TGTGCAGAATCTTTACTACA+TGG - chr4_2:46061855-46061874 Msa0602450:intron 35.0%
GTGCAGAATCTTTACTACAT+GGG - chr4_2:46061856-46061875 Msa0602450:intron 35.0%
TGCAGAATCTTTACTACATG+GGG - chr4_2:46061857-46061876 Msa0602450:intron 35.0%
!! GTTGATAATGGCAATGCTAA+TGG - chr4_2:46061883-46061902 Msa0602450:intron 35.0%
AATGCTAATGGCAATGCTAA+TGG - chr4_2:46061895-46061914 Msa0602450:intron 35.0%
TTTCCATGGCAGTTCAATAA+TGG - chr4_2:46062042-46062061 Msa0602450:intron 35.0%
AGACACAAATATGGCTGAAA+TGG - chr4_2:46062065-46062084 Msa0602450:intron 35.0%
ATGGCTGAAATGGATCATTT+AGG - chr4_2:46062075-46062094 Msa0602450:intron 35.0%
TTATATTGCGGCTGCAATTA+CGG - chr4_2:46062293-46062312 Msa0602450:five_prime_UTR 35.0%
! TGGACTGCAATTTAGAACTA+TGG - chr4_2:46062319-46062338 Msa0602450:five_prime_UTR 35.0%
! ACACCATACCTTAGTTTGAT+AGG - chr4_2:46062342-46062361 Msa0602450:five_prime_UTR 35.0%
! CACCATACCTTAGTTTGATA+GGG - chr4_2:46062343-46062362 Msa0602450:five_prime_UTR 35.0%
TTCCCTATCAAACTAAGGTA+TGG + chr4_2:46062348-46062367 None:intergenic 35.0%
ATCACTTCCCTATCAAACTA+AGG + chr4_2:46062353-46062372 None:intergenic 35.0%
! TGATGATGCAAAGTGAAGTG+AGG + chr4_2:46060435-46060454 None:intergenic 40.0%
!! AAGAAGTGTTTGTATGGGGA+TGG - chr4_2:46060584-46060603 Msa0602450:three_prime_UTR 40.0%
! TTCTTCTAGTGGACAACAAC+AGG - chr4_2:46060608-46060627 Msa0602450:three_prime_UTR 40.0%
TCATGAAGGACAAAGATGGA+AGG + chr4_2:46060715-46060734 None:intergenic 40.0%
! TCTTCTTTGAAGAACACCCT+TGG - chr4_2:46060794-46060813 Msa0602450:CDS 40.0%
TTGATGGAATAAAGTCAGGG+AGG - chr4_2:46060931-46060950 Msa0602450:CDS 40.0%
GCAAATGTCTAACCAGTCAT+TGG - chr4_2:46061327-46061346 Msa0602450:CDS 40.0%
TTAACATGCTCTCCAATGAC+TGG + chr4_2:46061342-46061361 None:intergenic 40.0%
!!! CATTTTAGAGCTTCTGGTTG+AGG + chr4_2:46061403-46061422 None:intergenic 40.0%
!!! CTTGGACATTTTAGAGCTTC+TGG + chr4_2:46061409-46061428 None:intergenic 40.0%
!! GTGTTGTTTGAGTCACATCT+TGG + chr4_2:46061427-46061446 None:intergenic 40.0%
! GCAAGTCTTGTAGGAGATAT+TGG - chr4_2:46061497-46061516 Msa0602450:CDS 40.0%
AGGAGATATTGGACTAAAGG+TGG - chr4_2:46061508-46061527 Msa0602450:CDS 40.0%
CATCATCAGCTTCATCAAAG+AGG - chr4_2:46061581-46061600 Msa0602450:intron 40.0%
!! GGATTTGGGTTGGTTTGAAA+TGG + chr4_2:46061619-46061638 None:intergenic 40.0%
! GGAAACAAGTGAGTGGATTT+GGG + chr4_2:46061633-46061652 None:intergenic 40.0%
ATTGAAGGGAAACAAGTGAG+TGG + chr4_2:46061640-46061659 None:intergenic 40.0%
ATCTCACACTAGCATTAGCT+AGG - chr4_2:46061677-46061696 Msa0602450:intron 40.0%
AGCATTAGCTAGGCTTCAAA+AGG - chr4_2:46061687-46061706 Msa0602450:intron 40.0%
GCATTAGCTAGGCTTCAAAA+GGG - chr4_2:46061688-46061707 Msa0602450:intron 40.0%
AAGAATACCACATGAGGTGT+TGG + chr4_2:46061764-46061783 None:intergenic 40.0%
AACCATTCCTCAAACAACCA+TGG - chr4_2:46061799-46061818 Msa0602450:intron 40.0%
ATCCATGGTTGTTTGAGGAA+TGG + chr4_2:46061804-46061823 None:intergenic 40.0%
GAAGAATCCATGGTTGTTTG+AGG + chr4_2:46061809-46061828 None:intergenic 40.0%
TAAGTGCTTCGAAGAATCCA+TGG + chr4_2:46061819-46061838 None:intergenic 40.0%
! TGGATTCTTCGAAGCACTTA+TGG - chr4_2:46061819-46061838 Msa0602450:intron 40.0%
! GGATTCTTCGAAGCACTTAT+GGG - chr4_2:46061820-46061839 Msa0602450:intron 40.0%
GCAGAATCTTTACTACATGG+GGG - chr4_2:46061858-46061877 Msa0602450:intron 40.0%
!!! GGGTTTTGTTAGGTTTTCCA+TGG - chr4_2:46062028-46062047 Msa0602450:intron 40.0%
TCTCCATTATTGAACTGCCA+TGG + chr4_2:46062048-46062067 None:intergenic 40.0%
ATGGATCATTTAGGAAGAGC+TGG - chr4_2:46062084-46062103 Msa0602450:intron 40.0%
ATCATTTAGGAAGAGCTGGT+TGG - chr4_2:46062088-46062107 Msa0602450:intron 40.0%
GAATGGTCTCACTTCATCTT+GGG - chr4_2:46062110-46062129 Msa0602450:intron 40.0%
AATGGTCTCACTTCATCTTG+GGG - chr4_2:46062111-46062130 Msa0602450:intron 40.0%
TGAACCTTAATAGTGCGACA+AGG - chr4_2:46062206-46062225 Msa0602450:intron 40.0%
ATTGCCTTGTCGCACTATTA+AGG + chr4_2:46062213-46062232 None:intergenic 40.0%
GACTAATGCAGTTGCAATTG+CGG - chr4_2:46062238-46062257 Msa0602450:intron 40.0%
GCTAACCAAGTCAATGAAGT+TGG - chr4_2:46062548-46062567 Msa0602450:five_prime_UTR 40.0%
! TCTCTCCAACTTCATTGACT+TGG + chr4_2:46062556-46062575 None:intergenic 40.0%
! TGATGATGCAAAGTGAAGTG+AGG + chr4_2:46060435-46060454 None:intergenic 40.0%
!! AAGAAGTGTTTGTATGGGGA+TGG - chr4_2:46060584-46060603 Msa0602450:three_prime_UTR 40.0%
! TTCTTCTAGTGGACAACAAC+AGG - chr4_2:46060608-46060627 Msa0602450:three_prime_UTR 40.0%
TCATGAAGGACAAAGATGGA+AGG + chr4_2:46060715-46060734 None:intergenic 40.0%
! TCTTCTTTGAAGAACACCCT+TGG - chr4_2:46060794-46060813 Msa0602450:CDS 40.0%
TTGATGGAATAAAGTCAGGG+AGG - chr4_2:46060931-46060950 Msa0602450:CDS 40.0%
GCAAATGTCTAACCAGTCAT+TGG - chr4_2:46061327-46061346 Msa0602450:CDS 40.0%
TTAACATGCTCTCCAATGAC+TGG + chr4_2:46061342-46061361 None:intergenic 40.0%
!!! CATTTTAGAGCTTCTGGTTG+AGG + chr4_2:46061403-46061422 None:intergenic 40.0%
!!! CTTGGACATTTTAGAGCTTC+TGG + chr4_2:46061409-46061428 None:intergenic 40.0%
!! GTGTTGTTTGAGTCACATCT+TGG + chr4_2:46061427-46061446 None:intergenic 40.0%
! GCAAGTCTTGTAGGAGATAT+TGG - chr4_2:46061497-46061516 Msa0602450:CDS 40.0%
AGGAGATATTGGACTAAAGG+TGG - chr4_2:46061508-46061527 Msa0602450:CDS 40.0%
CATCATCAGCTTCATCAAAG+AGG - chr4_2:46061581-46061600 Msa0602450:intron 40.0%
!! GGATTTGGGTTGGTTTGAAA+TGG + chr4_2:46061619-46061638 None:intergenic 40.0%
! GGAAACAAGTGAGTGGATTT+GGG + chr4_2:46061633-46061652 None:intergenic 40.0%
ATTGAAGGGAAACAAGTGAG+TGG + chr4_2:46061640-46061659 None:intergenic 40.0%
ATCTCACACTAGCATTAGCT+AGG - chr4_2:46061677-46061696 Msa0602450:intron 40.0%
AGCATTAGCTAGGCTTCAAA+AGG - chr4_2:46061687-46061706 Msa0602450:intron 40.0%
GCATTAGCTAGGCTTCAAAA+GGG - chr4_2:46061688-46061707 Msa0602450:intron 40.0%
AAGAATACCACATGAGGTGT+TGG + chr4_2:46061764-46061783 None:intergenic 40.0%
AACCATTCCTCAAACAACCA+TGG - chr4_2:46061799-46061818 Msa0602450:intron 40.0%
ATCCATGGTTGTTTGAGGAA+TGG + chr4_2:46061804-46061823 None:intergenic 40.0%
GAAGAATCCATGGTTGTTTG+AGG + chr4_2:46061809-46061828 None:intergenic 40.0%
TAAGTGCTTCGAAGAATCCA+TGG + chr4_2:46061819-46061838 None:intergenic 40.0%
! TGGATTCTTCGAAGCACTTA+TGG - chr4_2:46061819-46061838 Msa0602450:intron 40.0%
! GGATTCTTCGAAGCACTTAT+GGG - chr4_2:46061820-46061839 Msa0602450:intron 40.0%
GCAGAATCTTTACTACATGG+GGG - chr4_2:46061858-46061877 Msa0602450:intron 40.0%
!!! GGGTTTTGTTAGGTTTTCCA+TGG - chr4_2:46062028-46062047 Msa0602450:intron 40.0%
TCTCCATTATTGAACTGCCA+TGG + chr4_2:46062048-46062067 None:intergenic 40.0%
ATGGATCATTTAGGAAGAGC+TGG - chr4_2:46062084-46062103 Msa0602450:intron 40.0%
ATCATTTAGGAAGAGCTGGT+TGG - chr4_2:46062088-46062107 Msa0602450:intron 40.0%
GAATGGTCTCACTTCATCTT+GGG - chr4_2:46062110-46062129 Msa0602450:intron 40.0%
AATGGTCTCACTTCATCTTG+GGG - chr4_2:46062111-46062130 Msa0602450:intron 40.0%
TGAACCTTAATAGTGCGACA+AGG - chr4_2:46062206-46062225 Msa0602450:intron 40.0%
ATTGCCTTGTCGCACTATTA+AGG + chr4_2:46062213-46062232 None:intergenic 40.0%
GACTAATGCAGTTGCAATTG+CGG - chr4_2:46062238-46062257 Msa0602450:intron 40.0%
GCTAACCAAGTCAATGAAGT+TGG - chr4_2:46062548-46062567 Msa0602450:five_prime_UTR 40.0%
! TCTCTCCAACTTCATTGACT+TGG + chr4_2:46062556-46062575 None:intergenic 40.0%
!! GTCGTACAAGATGATGGATG+AGG + chr4_2:46060326-46060345 None:intergenic 45.0%
! ATGGGGATGGATTCTTCTAG+TGG - chr4_2:46060597-46060616 Msa0602450:three_prime_UTR 45.0%
AGGCCCCAGCTATATACATA+TGG + chr4_2:46060900-46060919 None:intergenic 45.0%
! TTTAGAGCTTCTGGTTGAGG+AGG + chr4_2:46061400-46061419 None:intergenic 45.0%
GGACTAAAGGTGGTACACTA+CGG - chr4_2:46061518-46061537 Msa0602450:CDS 45.0%
ACACTACGGAATGTTCCTGT+TGG - chr4_2:46061532-46061551 Msa0602450:intron 45.0%
TACGGAATGTTCCTGTTGGT+GGG - chr4_2:46061536-46061555 Msa0602450:intron 45.0%
! ACAAGTGAGTGGATTTGGGT+TGG + chr4_2:46061629-46061648 None:intergenic 45.0%
! GGGAAACAAGTGAGTGGATT+TGG + chr4_2:46061634-46061653 None:intergenic 45.0%
AGGCTTCAAAAGGGTCAACT+TGG - chr4_2:46061697-46061716 Msa0602450:intron 45.0%
AACCAAACCAACACCTCATG+TGG - chr4_2:46061754-46061773 Msa0602450:intron 45.0%
!! TACCACATGAGGTGTTGGTT+TGG + chr4_2:46061759-46061778 None:intergenic 45.0%
GAATCTTTACTACATGGGGG+AGG - chr4_2:46061861-46061880 Msa0602450:intron 45.0%
!! TACATGGGGGAGGTTGATAA+TGG - chr4_2:46061871-46061890 Msa0602450:intron 45.0%
TTAGGAAGAGCTGGTTGGAA+TGG - chr4_2:46062093-46062112 Msa0602450:intron 45.0%
GGAATGGTCTCACTTCATCT+TGG - chr4_2:46062109-46062128 Msa0602450:intron 45.0%
ATGGTCTCACTTCATCTTGG+GGG - chr4_2:46062112-46062131 Msa0602450:intron 45.0%
ACATTAGGGGGCTATTGAGA+AGG + chr4_2:46062143-46062162 None:intergenic 45.0%
ACGAGACGGTGTCTACATTA+GGG + chr4_2:46062157-46062176 None:intergenic 45.0%
AGTTGCAATTGCGGTTGTGA+TGG - chr4_2:46062247-46062266 Msa0602450:intron 45.0%
!! GTCGTACAAGATGATGGATG+AGG + chr4_2:46060326-46060345 None:intergenic 45.0%
! ATGGGGATGGATTCTTCTAG+TGG - chr4_2:46060597-46060616 Msa0602450:three_prime_UTR 45.0%
AGGCCCCAGCTATATACATA+TGG + chr4_2:46060900-46060919 None:intergenic 45.0%
! TTTAGAGCTTCTGGTTGAGG+AGG + chr4_2:46061400-46061419 None:intergenic 45.0%
GGACTAAAGGTGGTACACTA+CGG - chr4_2:46061518-46061537 Msa0602450:CDS 45.0%
ACACTACGGAATGTTCCTGT+TGG - chr4_2:46061532-46061551 Msa0602450:intron 45.0%
TACGGAATGTTCCTGTTGGT+GGG - chr4_2:46061536-46061555 Msa0602450:intron 45.0%
! ACAAGTGAGTGGATTTGGGT+TGG + chr4_2:46061629-46061648 None:intergenic 45.0%
! GGGAAACAAGTGAGTGGATT+TGG + chr4_2:46061634-46061653 None:intergenic 45.0%
AGGCTTCAAAAGGGTCAACT+TGG - chr4_2:46061697-46061716 Msa0602450:intron 45.0%
AACCAAACCAACACCTCATG+TGG - chr4_2:46061754-46061773 Msa0602450:intron 45.0%
!! TACCACATGAGGTGTTGGTT+TGG + chr4_2:46061759-46061778 None:intergenic 45.0%
GAATCTTTACTACATGGGGG+AGG - chr4_2:46061861-46061880 Msa0602450:intron 45.0%
!! TACATGGGGGAGGTTGATAA+TGG - chr4_2:46061871-46061890 Msa0602450:intron 45.0%
TTAGGAAGAGCTGGTTGGAA+TGG - chr4_2:46062093-46062112 Msa0602450:intron 45.0%
GGAATGGTCTCACTTCATCT+TGG - chr4_2:46062109-46062128 Msa0602450:intron 45.0%
ATGGTCTCACTTCATCTTGG+GGG - chr4_2:46062112-46062131 Msa0602450:intron 45.0%
ACATTAGGGGGCTATTGAGA+AGG + chr4_2:46062143-46062162 None:intergenic 45.0%
ACGAGACGGTGTCTACATTA+GGG + chr4_2:46062157-46062176 None:intergenic 45.0%
AGTTGCAATTGCGGTTGTGA+TGG - chr4_2:46062247-46062266 Msa0602450:intron 45.0%
!! AAAAATTGAAAATTTATTAA+TGG - chr4_2:46061020-46061039 Msa0602450:CDS 5.0%
!! AAAAATTGAAAATTTATTAA+TGG - chr4_2:46061020-46061039 Msa0602450:CDS 5.0%
!! GCTTCTGGTTGAGGAGGTTT+TGG + chr4_2:46061394-46061413 None:intergenic 50.0%
CTACGGAATGTTCCTGTTGG+TGG - chr4_2:46061535-46061554 Msa0602450:intron 50.0%
ACGGAATGTTCCTGTTGGTG+GGG - chr4_2:46061537-46061556 Msa0602450:intron 50.0%
GAGACGGTGTCTACATTAGG+GGG + chr4_2:46062155-46062174 None:intergenic 50.0%
CGAGACGGTGTCTACATTAG+GGG + chr4_2:46062156-46062175 None:intergenic 50.0%
CACGAGACGGTGTCTACATT+AGG + chr4_2:46062158-46062177 None:intergenic 50.0%
TGCGGCTGCAATTACGGTTA+TGG - chr4_2:46062299-46062318 Msa0602450:five_prime_UTR 50.0%
!! GCTTCTGGTTGAGGAGGTTT+TGG + chr4_2:46061394-46061413 None:intergenic 50.0%
CTACGGAATGTTCCTGTTGG+TGG - chr4_2:46061535-46061554 Msa0602450:intron 50.0%
ACGGAATGTTCCTGTTGGTG+GGG - chr4_2:46061537-46061556 Msa0602450:intron 50.0%
GAGACGGTGTCTACATTAGG+GGG + chr4_2:46062155-46062174 None:intergenic 50.0%
CGAGACGGTGTCTACATTAG+GGG + chr4_2:46062156-46062175 None:intergenic 50.0%
CACGAGACGGTGTCTACATT+AGG + chr4_2:46062158-46062177 None:intergenic 50.0%
TGCGGCTGCAATTACGGTTA+TGG - chr4_2:46062299-46062318 Msa0602450:five_prime_UTR 50.0%
! CGGAATGTTCCTGTTGGTGG+GGG - chr4_2:46061538-46061557 Msa0602450:intron 55.0%
! GGAATGTTCCTGTTGGTGGG+GGG - chr4_2:46061539-46061558 Msa0602450:intron 55.0%
TTTCTACACCCCCCACCAAC+AGG + chr4_2:46061550-46061569 None:intergenic 55.0%
CTCACTTCATCTTGGGGGCA+TGG - chr4_2:46062117-46062136 Msa0602450:intron 55.0%
! CGGAATGTTCCTGTTGGTGG+GGG - chr4_2:46061538-46061557 Msa0602450:intron 55.0%
! GGAATGTTCCTGTTGGTGGG+GGG - chr4_2:46061539-46061558 Msa0602450:intron 55.0%
TTTCTACACCCCCCACCAAC+AGG + chr4_2:46061550-46061569 None:intergenic 55.0%
CTCACTTCATCTTGGGGGCA+TGG - chr4_2:46062117-46062136 Msa0602450:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 46060297 46062580 46060297 ID=Msa0602450;Name=Msa0602450
chr4_2 mRNA 46060297 46062580 46060297 ID=Msa0602450-mRNA-1;Parent=Msa0602450;Name=Msa0602450-mRNA-1;_AED=0.01;_eAED=0.01;_QI=300|1|1|1|1|1|2|416|289
chr4_2 exon 46060297 46061549 46060297 ID=Msa0602450-mRNA-1:exon:10377;Parent=Msa0602450-mRNA-1
chr4_2 exon 46062248 46062580 46062248 ID=Msa0602450-mRNA-1:exon:10376;Parent=Msa0602450-mRNA-1
chr4_2 five_prime_UTR 46062281 46062580 46062281 ID=Msa0602450-mRNA-1:five_prime_utr;Parent=Msa0602450-mRNA-1
chr4_2 CDS 46062248 46062280 46062248 ID=Msa0602450-mRNA-1:cds;Parent=Msa0602450-mRNA-1
chr4_2 CDS 46060713 46061549 46060713 ID=Msa0602450-mRNA-1:cds;Parent=Msa0602450-mRNA-1
chr4_2 three_prime_UTR 46060297 46060712 46060297 ID=Msa0602450-mRNA-1:three_prime_utr;Parent=Msa0602450-mRNA-1
Gene Sequence

>Msa0602450

ATGGGGATGGATTCTTCTAGTGGACAACAACAGCAAATGTCTAACCAGTCATTGGAGAGCATGTTAACATGTTCAAAAGCAGAACAAGACAAAAAGCCAAAACCTCCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAACAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACTAAAGGTGGTACACTACGGAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCAGCTTCATCAAAGAGGTCTCAAGATCAACCATTTCAAACCAACCCAAATCCACTCACTTGTTTCCCTTCAATGTCCTATGATTCCAATGATCTCACACTAGCATTAGCTAGGCTTCAAAAGGGTCAACTTGGATTTGATCATGAACATGATTTTTCCATTTTAGGAAACCAAACCAACACCTCATGTGGTATTCTTAACAATCATGGTATGAACCATTCCTCAAACAACCATGGATTCTTCGAAGCACTTATGGGATCTCAAAACAATGTGCAGAATCTTTACTACATGGGGGAGGTTGATAATGGCAATGCTAATGGCAATGCTAATGGTGAGATGATGTTACCTTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTTACAGTTACTACTATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATGGAGACACAAATATGGCTGAAATGGATCATTTAGGAAGAGCTGGTTGGAATGGTCTCACTTCATCTTGGGGGCATGGCCTTCTCAATAGCCCCCTAATGTAG
Protein sequence

>Msa0602450

MGMDSSSGQQQQMSNQSLESMLTCSKAEQDKKPKPPQPEALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSASSKRSQDQPFQTNPNPLTCFPSMSYDSNDLTLALARLQKGQLGFDHEHDFSILGNQTNTSCGILNNHGMNHSSNNHGFFEALMGSQNNVQNLYYMGEVDNGNANGNANGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNGDTNMAEMDHLGRAGWNGLTSSWGHGLLNSPLM*