AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683550 MtrunA17_Chr4g0030051 98.616 289 4 0 1 289 1 289 0.0 596
Msa0683550 MtrunA17_Chr2g0326001 54.817 301 81 15 19 289 18 293 5.86e-85 256
Msa0683550 MtrunA17_Chr3g0117601 34.718 337 141 15 2 289 28 334 1.49e-35 130
Msa0683550 MtrunA17_Chr3g0127201 76.471 68 16 0 30 97 16 83 5.68e-34 125
Msa0683550 MtrunA17_Chr4g0031411 66.304 92 26 2 25 111 58 149 1.08e-33 125
Msa0683550 MtrunA17_Chr1g0188851 56.701 97 38 1 3 95 1 97 1.35e-33 124
Msa0683550 MtrunA17_Chr8g0341671 70.270 74 22 0 29 102 8 81 4.42e-32 118
Msa0683550 MtrunA17_Chr3g0126201 64.706 85 30 0 15 99 25 109 5.14e-32 120
Msa0683550 MtrunA17_Chr2g0328021 70.423 71 20 1 26 96 48 117 9.56e-32 119
Msa0683550 MtrunA17_Chr4g0010151 66.250 80 26 1 17 95 57 136 1.04e-31 120
Msa0683550 MtrunA17_Chr4g0047001 59.596 99 30 2 42 130 56 154 1.19e-31 120
Msa0683550 MtrunA17_Chr8g0346551 66.234 77 24 1 23 99 8 82 2.04e-31 117
Msa0683550 MtrunA17_Chr7g0237921 68.831 77 23 1 20 95 54 130 7.04e-31 118
Msa0683550 MtrunA17_Chr1g0177251 67.949 78 22 1 43 117 14 91 8.85e-31 116
Msa0683550 MtrunA17_Chr2g0282441 85.965 57 6 1 36 92 22 76 9.66e-31 117
Msa0683550 MtrunA17_Chr8g0374251 82.143 56 10 0 39 94 66 121 1.52e-30 117
Msa0683550 MtrunA17_Chr8g0367161 61.538 78 30 0 37 114 28 105 1.94e-30 117
Msa0683550 MtrunA17_Chr7g0223311 72.857 70 18 1 40 108 76 145 1.77e-29 115
Msa0683550 MtrunA17_Chr5g0411951 80.702 57 10 1 35 91 38 93 3.06e-29 113
Msa0683550 MtrunA17_Chr8g0374111 70.588 68 18 1 32 97 18 85 3.44e-29 110
Msa0683550 MtrunA17_Chr4g0061761 86.792 53 7 0 39 91 38 90 3.53e-29 113
Msa0683550 MtrunA17_Chr2g0282511 90.000 50 5 0 40 89 44 93 4.37e-28 110
Msa0683550 MtrunA17_Chr2g0282051 60.465 86 31 2 10 95 17 99 2.30e-27 107
Msa0683550 MtrunA17_Chr2g0308011 88.000 50 6 0 40 89 36 85 3.21e-27 105
Msa0683550 MtrunA17_Chr4g0047761 80.702 57 10 1 39 95 70 125 1.66e-26 105
Msa0683550 MtrunA17_Chr3g0092111 66.197 71 23 1 29 99 125 194 8.86e-26 105
Msa0683550 MtrunA17_Chr7g0217581 67.143 70 22 1 29 98 221 289 1.31e-25 106
Msa0683550 MtrunA17_Chr5g0417571 59.740 77 30 1 29 105 127 202 3.63e-25 102
Msa0683550 MtrunA17_Chr6g0460731 51.042 96 45 2 4 98 59 153 3.66e-25 103
Msa0683550 MtrunA17_Chr6g0460721 48.315 89 45 1 10 98 59 146 5.48e-25 102
Msa0683550 MtrunA17_Chr6g0453321 52.174 92 43 1 7 98 103 193 4.67e-24 101
Msa0683550 MtrunA17_Chr7g0254161 60.563 71 27 1 28 98 89 158 5.97e-24 100
Msa0683550 MtrunA17_Chr4g0042481 54.321 81 33 1 19 99 104 180 7.77e-24 100
Msa0683550 MtrunA17_Chr8g0355261 60.294 68 26 1 29 96 107 173 2.60e-23 99.0
Msa0683550 MtrunA17_Chr2g0283811 67.857 56 18 0 39 94 45 100 7.34e-23 92.4
Msa0683550 MtrunA17_Chr5g0417551 59.211 76 27 1 25 100 115 186 5.02e-22 94.4
Msa0683550 MtrunA17_Chr5g0417561 59.211 76 27 1 25 100 107 178 6.54e-22 94.0
Msa0683550 MtrunA17_Chr5g0417601 58.571 70 28 1 25 94 125 193 1.00e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683550 AT2G28510.1 41.083 314 122 11 10 289 4 288 1.17e-54 179
Msa0683550 AT5G60200.1 39.831 236 81 7 25 255 40 219 1.52e-42 147
Msa0683550 AT3G45610.1 35.156 256 109 9 1 255 11 210 4.20e-37 132
Msa0683550 AT1G51700.1 63.158 95 31 2 21 114 16 107 1.18e-34 124
Msa0683550 AT3G55370.3 71.429 77 21 1 25 100 104 180 6.70e-33 124
Msa0683550 AT3G55370.1 71.429 77 21 1 25 100 59 135 7.68e-33 123
Msa0683550 AT3G55370.2 71.429 77 21 1 25 100 59 135 1.28e-32 123
Msa0683550 AT5G02460.1 73.611 72 18 1 25 95 78 149 4.85e-32 122
Msa0683550 AT1G21340.1 65.116 86 18 1 40 113 37 122 7.33e-32 119
Msa0683550 AT1G07640.2 65.823 79 26 1 18 95 53 131 1.61e-31 120
Msa0683550 AT5G60850.1 72.000 75 19 1 39 111 49 123 1.80e-31 119
Msa0683550 AT4G24060.1 72.727 66 18 0 30 95 42 107 2.04e-31 120
Msa0683550 AT3G52440.1 59.574 94 33 1 43 136 27 115 2.29e-31 117
Msa0683550 AT1G07640.3 65.823 79 26 1 18 95 61 139 2.30e-31 119
Msa0683550 AT3G52440.2 59.574 94 33 1 43 136 46 134 2.81e-31 117
Msa0683550 AT3G61850.2 52.066 121 52 3 27 147 49 163 2.95e-31 118
Msa0683550 AT3G61850.3 52.066 121 52 3 27 147 49 163 2.95e-31 118
Msa0683550 AT3G61850.1 52.066 121 52 3 27 147 61 175 3.38e-31 118
Msa0683550 AT3G61850.5 52.066 121 52 3 27 147 49 163 3.75e-31 118
Msa0683550 AT3G61850.4 52.066 121 52 3 27 147 61 175 4.77e-31 118
Msa0683550 AT2G37590.1 67.123 73 23 1 25 96 72 144 5.61e-31 118
Msa0683550 AT1G07640.1 69.444 72 21 1 25 95 4 75 7.52e-31 117
Msa0683550 AT2G28810.2 71.642 67 18 1 26 92 63 128 7.78e-31 118
Msa0683550 AT2G28810.1 71.642 67 18 1 26 92 80 145 1.46e-30 117
Msa0683550 AT5G65590.1 80.328 61 12 0 41 101 41 101 1.66e-30 117
Msa0683550 AT5G62940.1 77.049 61 14 0 31 91 63 123 1.96e-30 117
Msa0683550 AT1G28310.1 87.273 55 7 0 41 95 27 81 7.55e-30 115
Msa0683550 AT1G28310.2 87.273 55 7 0 41 95 51 105 1.18e-29 115
Msa0683550 AT3G21270.1 90.566 53 5 0 41 93 29 81 3.35e-29 110
Msa0683550 AT4G38000.1 72.727 66 17 1 30 94 30 95 1.07e-28 110
Msa0683550 AT4G21050.1 69.118 68 21 0 38 105 21 88 1.16e-28 109
Msa0683550 AT3G50410.1 72.308 65 18 0 33 97 22 86 2.24e-28 109
Msa0683550 AT5G66940.1 58.511 94 29 3 37 123 28 118 5.64e-28 108
Msa0683550 AT4G00940.1 80.702 57 11 0 39 95 66 122 5.84e-28 109
Msa0683550 AT4G00940.3 80.702 57 11 0 39 95 66 122 5.84e-28 109
Msa0683550 AT4G00940.2 80.702 57 11 0 39 95 66 122 5.84e-28 109
Msa0683550 AT1G64620.1 72.131 61 17 0 30 90 38 98 2.66e-27 108
Msa0683550 AT2G46590.1 63.158 76 24 1 13 88 44 115 3.73e-27 108
Msa0683550 AT2G46590.2 63.158 76 24 1 13 88 56 127 4.66e-27 108
Msa0683550 AT1G47655.1 75.439 57 14 0 33 89 21 77 4.48e-26 102
Msa0683550 AT5G62430.1 47.959 98 45 2 3 100 22 113 1.78e-25 103
Msa0683550 AT3G47500.1 52.632 95 41 1 4 98 77 167 1.87e-25 105
Msa0683550 AT5G39660.3 61.333 75 25 1 24 98 125 195 2.47e-24 102
Msa0683550 AT5G39660.1 61.333 75 25 1 24 98 125 195 2.47e-24 102
Msa0683550 AT5G39660.2 61.333 75 25 1 24 98 125 195 2.47e-24 102
Msa0683550 AT4G21080.1 56.579 76 24 1 43 109 27 102 6.07e-24 97.8
Msa0683550 AT1G69570.1 53.488 86 36 1 9 94 104 185 6.44e-24 100
Msa0683550 AT4G21040.1 75.000 52 13 0 43 94 27 78 2.19e-23 95.9
Msa0683550 AT1G26790.1 55.263 76 33 1 20 94 89 164 2.86e-23 98.2
Msa0683550 AT2G34140.1 60.000 65 22 1 30 94 51 111 1.61e-22 92.0
Msa0683550 AT1G29160.1 66.071 56 19 0 39 94 60 115 2.76e-22 91.7
Msa0683550 AT4G21030.1 51.471 68 33 0 38 105 18 85 1.19e-15 74.3

Find 104 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTTTGGTTTCCTAAAA+TGG 0.139828 4_4:-46168984 None:intergenic
GGGAAACAAGTGAGTGGATT+TGG 0.231178 4_4:-46168872 None:intergenic
TTAGGGAACAAAATGAAAAT+AGG 0.240393 4_4:+46169248 Msa0683550:CDS
TGGATTCTTCGAAGCACTTA+TGG 0.247834 4_4:+46169060 Msa0683550:CDS
GCTTCTGGTTGAGGAGGTTT+TGG 0.248273 4_4:-46168632 None:intergenic
ATTGCCTTGTCGCACTATTA+AGG 0.253233 4_4:-46169451 None:intergenic
GCAAGTCTTGTAGGAGATAT+TGG 0.255429 4_4:+46168738 Msa0683550:CDS
TCATTACTCTTTCTCTCTCT+TGG 0.271913 4_4:+46167602 Msa0683550:five_prime_UTR
GAATGGTCTCACTTCATCTT+GGG 0.274434 4_4:+46169351 Msa0683550:CDS
GATATTTCTGCAAGTCTTGT+AGG 0.294030 4_4:+46168729 Msa0683550:CDS
GGAATGGTCTCACTTCATCT+TGG 0.324184 4_4:+46169350 Msa0683550:CDS
ATTGTTGTAGTAACAAAATT+TGG 0.325870 4_4:-46168687 None:intergenic
TTTCCATGGCAGTTCAATAA+TGG 0.330980 4_4:+46169283 Msa0683550:CDS
ACACCATACCTTAGTTTGAT+AGG 0.336527 4_4:+46169583 Msa0683550:three_prime_UTR
TGCGGCTGCAATTACGGTTA+TGG 0.348385 4_4:+46169540 Msa0683550:three_prime_UTR
GGAAACAAGTGAGTGGATTT+GGG 0.349121 4_4:-46168871 None:intergenic
CATTACTCTTTCTCTCTCTT+GGG 0.353198 4_4:+46167603 Msa0683550:five_prime_UTR
AACAAGAAATGTGTAATGTT+AGG 0.357073 4_4:+46169230 Msa0683550:CDS
ACGAGACGGTGTCTACATTA+GGG 0.358019 4_4:-46169395 None:intergenic
ATGGCTGAAATGGATCATTT+AGG 0.361202 4_4:+46169316 Msa0683550:CDS
TTATATTGCGGCTGCAATTA+CGG 0.361215 4_4:+46169534 Msa0683550:three_prime_UTR
TGGACTGCAATTTAGAACTA+TGG 0.362313 4_4:+46169560 Msa0683550:three_prime_UTR
TTGATTAAGAAGTGTTTGTA+TGG 0.363457 4_4:+46167819 Msa0683550:exon
AGACACAAATATGGCTGAAA+TGG 0.367887 4_4:+46169306 Msa0683550:CDS
CACGAGACGGTGTCTACATT+AGG 0.377042 4_4:-46169396 None:intergenic
CAATAATGGAGACACAAATA+TGG 0.378026 4_4:+46169297 Msa0683550:CDS
GGATTCTTCGAAGCACTTAT+GGG 0.384728 4_4:+46169061 Msa0683550:CDS
CAAGACTTGCAGAAATATCT+TGG 0.387546 4_4:-46168725 None:intergenic
TAGGGAACAAAATGAAAATA+GGG 0.390383 4_4:+46169249 Msa0683550:CDS
AGGTAAGTAATGAAAATCTA+AGG 0.411275 4_4:-46167653 None:intergenic
AGGAATGTTCCTGTTGGTGG+GGG 0.412807 4_4:+46168779 Msa0683550:CDS
TTCTTCTAGTGGACAACAAC+AGG 0.413714 4_4:+46167849 Msa0683550:CDS
TGTGAGATCATTGGAATCAT+AGG 0.425382 4_4:-46168903 None:intergenic
GGATTTGGGTTGGTTTGAAA+TGG 0.429582 4_4:-46168857 None:intergenic
GTTGATAATGGCAATGCTAA+TGG 0.432043 4_4:+46169124 Msa0683550:CDS
TACCACATGAGGTGTTGGTT+TGG 0.441239 4_4:-46168997 None:intergenic
AGCATTAGCTAGGCTTCAAA+AGG 0.442460 4_4:+46168928 Msa0683550:CDS
GCTAACCAAGTCAATGAAGT+TGG 0.443836 4_4:+46169786 Msa0683550:three_prime_UTR
GTTTGAGGAGAGAAAAGAAA+AGG 0.447592 4_4:-46167721 None:intergenic
ACAAGAAATGTGTAATGTTA+GGG 0.450520 4_4:+46169231 Msa0683550:CDS
GAAGAATCCATGGTTGTTTG+AGG 0.461029 4_4:-46169047 None:intergenic
ATGCTCATTTCATGATCATA+AGG 0.463078 4_4:-46169172 None:intergenic
GCAAATGTCTAACCAGTCAT+TGG 0.467897 4_4:+46168568 Msa0683550:intron
TGTGGTATTCTTAACAATCA+TGG 0.480447 4_4:+46169013 Msa0683550:CDS
AAGAAGTGTTTGTATGGGGA+TGG 0.488483 4_4:+46167825 Msa0683550:exon
ATCCATGGTTGTTTGAGGAA+TGG 0.489166 4_4:-46169042 None:intergenic
AGGCTTCAAAAGGGTCAACT+TGG 0.489311 4_4:+46168938 Msa0683550:CDS
ACAAGTGAGTGGATTTGGGT+TGG 0.491105 4_4:-46168867 None:intergenic
CACCATACCTTAGTTTGATA+GGG 0.494586 4_4:+46169584 Msa0683550:three_prime_UTR
CCGCAATATAAAGATTTAAG+AGG 0.494980 4_4:-46169522 None:intergenic
TAAGGAATGTTCCTGTTGGT+GGG 0.496140 4_4:+46168777 Msa0683550:CDS
ATCACTTCCCTATCAAACTA+AGG 0.497359 4_4:-46169591 None:intergenic
AATGGTCTCACTTCATCTTG+GGG 0.497543 4_4:+46169352 Msa0683550:CDS
TGTAGGAGATATTGGACTAA+AGG 0.499003 4_4:+46168746 Msa0683550:CDS
GTGTTGTTTGAGTCACATCT+TGG 0.500769 4_4:-46168665 None:intergenic
TGAATAAGGAAATGAAAGAA+AGG 0.501058 4_4:-46167747 None:intergenic
ATGGATCATTTAGGAAGAGC+TGG 0.502060 4_4:+46169325 Msa0683550:CDS
TAATGCTAGTGTGAGATCAT+TGG 0.503293 4_4:-46168912 None:intergenic
TTGGAATCATAGGACATTGA+AGG 0.508739 4_4:-46168893 None:intergenic
TTAGGAAGAGCTGGTTGGAA+TGG 0.509850 4_4:+46169334 Msa0683550:CDS
TTTGACAATTTAAGGTGCAA+AGG 0.511000 4_4:-46169699 None:intergenic
CCTCTTAAATCTTTATATTG+CGG 0.512201 4_4:+46169522 Msa0683550:three_prime_UTR
CTAAGGAATGTTCCTGTTGG+TGG 0.517333 4_4:+46168776 Msa0683550:CDS
TGATTAAGAAGTGTTTGTAT+GGG 0.520497 4_4:+46167820 Msa0683550:exon
AAGAATACCACATGAGGTGT+TGG 0.521494 4_4:-46169002 None:intergenic
TCTCTCCAACTTCATTGACT+TGG 0.524005 4_4:-46169791 None:intergenic
ATGAAAGAAAGGAAAGTTTG+AGG 0.525614 4_4:-46167736 None:intergenic
TTCCCTATCAAACTAAGGTA+TGG 0.534249 4_4:-46169586 None:intergenic
GACTAATGCAGTTGCAATTG+CGG 0.539445 4_4:+46169479 Msa0683550:three_prime_UTR
AGAAAAGAAAAGGATAGAGA+TGG 0.543014 4_4:-46167711 None:intergenic
TGCAGAATCTTTACTACATG+GGG 0.546230 4_4:+46169098 Msa0683550:CDS
ATGGGGATGGATTCTTCTAG+TGG 0.553754 4_4:+46167838 Msa0683550:CDS
TTTAGAGCTTCTGGTTGAGG+AGG 0.557206 4_4:-46168638 None:intergenic
AAGGAATGTTCCTGTTGGTG+GGG 0.558824 4_4:+46168778 Msa0683550:CDS
TTAACATGCTCTCCAATGAC+TGG 0.564124 4_4:-46168580 None:intergenic
GGACTAAAGGTGGTACACTA+AGG 0.568077 4_4:+46168759 Msa0683550:CDS
AATGCTAATGGCAATGGTAA+TGG 0.568080 4_4:+46169136 Msa0683550:CDS
ATCATTTAGGAAGAGCTGGT+TGG 0.573027 4_4:+46169329 Msa0683550:CDS
CGAGACGGTGTCTACATTAG+GGG 0.579103 4_4:-46169394 None:intergenic
TGTGCAGAATCTTTACTACA+TGG 0.579242 4_4:+46169096 Msa0683550:CDS
TGGAATCATAGGACATTGAA+GGG 0.583945 4_4:-46168892 None:intergenic
GGAATGTTCCTGTTGGTGGG+GGG 0.588003 4_4:+46168780 Msa0683550:CDS
ATCTCACACTAGCATTAGCT+AGG 0.588061 4_4:+46168918 Msa0683550:CDS
GTGCAGAATCTTTACTACAT+GGG 0.589427 4_4:+46169097 Msa0683550:CDS
AGTTGCAATTGCGGTTGTGA+TGG 0.595211 4_4:+46169488 Msa0683550:three_prime_UTR
CATCATCAGCTTCATCAAAG+AGG 0.595811 4_4:+46168822 Msa0683550:CDS
AACCAAACCAACACCTCATG+TGG 0.607094 4_4:+46168995 Msa0683550:CDS
AACCATTCCTCAAACAACCA+TGG 0.607175 4_4:+46169040 Msa0683550:CDS
TAAGTGCTTCGAAGAATCCA+TGG 0.607290 4_4:-46169057 None:intergenic
ATGGTCTCACTTCATCTTGG+GGG 0.616298 4_4:+46169353 Msa0683550:CDS
AATGGCAATGCTAATGGCAA+TGG 0.626445 4_4:+46169130 Msa0683550:CDS
TCTCCATTATTGAACTGCCA+TGG 0.629912 4_4:-46169286 None:intergenic
GCATTAGCTAGGCTTCAAAA+GGG 0.630153 4_4:+46168929 Msa0683550:CDS
GTCGTACAAGATGATGGATG+AGG 0.632055 4_4:-46167564 None:intergenic
GAGACGGTGTCTACATTAGG+GGG 0.640287 4_4:-46169393 None:intergenic
ATTGTTAAGAATACCACATG+AGG 0.643870 4_4:-46169008 None:intergenic
AGGAGATATTGGACTAAAGG+TGG 0.646558 4_4:+46168749 Msa0683550:CDS
GATTAAGAAGTGTTTGTATG+GGG 0.649738 4_4:+46167821 Msa0683550:exon
ACACTAAGGAATGTTCCTGT+TGG 0.660187 4_4:+46168773 Msa0683550:CDS
ATTGAAGGGAAACAAGTGAG+TGG 0.662440 4_4:-46168878 None:intergenic
TGATGATGCAAAGTGAAGTG+AGG 0.684560 4_4:-46167673 None:intergenic
TGAACCTTAATAGTGCGACA+AGG 0.723900 4_4:+46169447 Msa0683550:three_prime_UTR
TGATATTTAGAATCACGAGA+CGG 0.729031 4_4:-46169409 None:intergenic
GCAGAATCTTTACTACATGG+GGG 0.765910 4_4:+46169099 Msa0683550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTGTATATATGAATA+AGG - chr4_4:46167764-46167783 None:intergenic 15.0%
!! CAAAAATTAAGGAAAATAAT+AGG - chr4_4:46168013-46168032 None:intergenic 15.0%
!! ATACATAATAAAATTGTAGA+GGG - chr4_4:46168087-46168106 None:intergenic 15.0%
!! TATACATAATAAAATTGTAG+AGG - chr4_4:46168088-46168107 None:intergenic 15.0%
!! TAACATTATGTTTGAATTAA+CGG + chr4_4:46168331-46168350 Msa0683550:intron 15.0%
!! AACTAAGAAAAATAAAATAG+AGG - chr4_4:46169644-46169663 None:intergenic 15.0%
!!! TTTTTGTGTATATATGAATA+AGG - chr4_4:46167764-46167783 None:intergenic 15.0%
!! CAAAAATTAAGGAAAATAAT+AGG - chr4_4:46168013-46168032 None:intergenic 15.0%
!! ATACATAATAAAATTGTAGA+GGG - chr4_4:46168087-46168106 None:intergenic 15.0%
!! TATACATAATAAAATTGTAG+AGG - chr4_4:46168088-46168107 None:intergenic 15.0%
!! TAACATTATGTTTGAATTAA+CGG + chr4_4:46168331-46168350 Msa0683550:intron 15.0%
!! AACTAAGAAAAATAAAATAG+AGG - chr4_4:46169644-46169663 None:intergenic 15.0%
!! TCATGTAATATTTATTAACG+TGG + chr4_4:46167915-46167934 Msa0683550:intron 20.0%
!! CAAAGAAGAAACAAAAATTA+AGG - chr4_4:46168024-46168043 None:intergenic 20.0%
!!! ACTAATTTTATTTCATCCAA+GGG - chr4_4:46168054-46168073 None:intergenic 20.0%
!!! TACTAATTTTATTTCATCCA+AGG - chr4_4:46168055-46168074 None:intergenic 20.0%
!! TTCCATCAAATATTAATTCT+AGG - chr4_4:46168161-46168180 None:intergenic 20.0%
!!! TTTACTTTATTTGATCTAGA+GGG - chr4_4:46168238-46168257 None:intergenic 20.0%
!!! TTTTACTTTATTTGATCTAG+AGG - chr4_4:46168239-46168258 None:intergenic 20.0%
!! TCACAAAAATTTGTACTATT+TGG + chr4_4:46168506-46168525 Msa0683550:intron 20.0%
!! ATTGTTGTAGTAACAAAATT+TGG - chr4_4:46168690-46168709 None:intergenic 20.0%
!!! CACAAAATTTTGACAATTTA+AGG - chr4_4:46169710-46169729 None:intergenic 20.0%
!!! TTTTAATTGGTGAAATGAAT+AGG + chr4_4:46169741-46169760 Msa0683550:three_prime_UTR 20.0%
!! TCATGTAATATTTATTAACG+TGG + chr4_4:46167915-46167934 Msa0683550:intron 20.0%
!! CAAAGAAGAAACAAAAATTA+AGG - chr4_4:46168024-46168043 None:intergenic 20.0%
!!! ACTAATTTTATTTCATCCAA+GGG - chr4_4:46168054-46168073 None:intergenic 20.0%
!!! TACTAATTTTATTTCATCCA+AGG - chr4_4:46168055-46168074 None:intergenic 20.0%
!! TTCCATCAAATATTAATTCT+AGG - chr4_4:46168161-46168180 None:intergenic 20.0%
!!! TTTACTTTATTTGATCTAGA+GGG - chr4_4:46168238-46168257 None:intergenic 20.0%
!!! TTTTACTTTATTTGATCTAG+AGG - chr4_4:46168239-46168258 None:intergenic 20.0%
!! TCACAAAAATTTGTACTATT+TGG + chr4_4:46168506-46168525 Msa0683550:intron 20.0%
!! ATTGTTGTAGTAACAAAATT+TGG - chr4_4:46168690-46168709 None:intergenic 20.0%
!!! CACAAAATTTTGACAATTTA+AGG - chr4_4:46169710-46169729 None:intergenic 20.0%
!!! TTTTAATTGGTGAAATGAAT+AGG + chr4_4:46169741-46169760 Msa0683550:three_prime_UTR 20.0%
! AGGTAAGTAATGAAAATCTA+AGG - chr4_4:46167656-46167675 None:intergenic 25.0%
! TGAATAAGGAAATGAAAGAA+AGG - chr4_4:46167750-46167769 None:intergenic 25.0%
!!! CTAGAGATAAAAAAGTGTTA+TGG - chr4_4:46167787-46167806 None:intergenic 25.0%
!!! TTGATTAAGAAGTGTTTGTA+TGG + chr4_4:46167819-46167838 Msa0683550:exon 25.0%
!!! TGATTAAGAAGTGTTTGTAT+GGG + chr4_4:46167820-46167839 Msa0683550:exon 25.0%
! GTAGTACTAAAAATTCATGA+AGG - chr4_4:46167970-46167989 None:intergenic 25.0%
!!! CATGAATTTTTAGTACTACT+TGG + chr4_4:46167971-46167990 Msa0683550:intron 25.0%
! TGTATATACTATACTACTCA+TGG + chr4_4:46168102-46168121 Msa0683550:intron 25.0%
! ATATTTGATGGAATAAAGTC+AGG + chr4_4:46168168-46168187 Msa0683550:intron 25.0%
! TATTTGATGGAATAAAGTCA+GGG + chr4_4:46168169-46168188 Msa0683550:intron 25.0%
!! TTACTTTATTTGATCTAGAG+GGG - chr4_4:46168237-46168256 None:intergenic 25.0%
!! TTATTAATGGATGTACATGT+TGG + chr4_4:46168274-46168293 Msa0683550:intron 25.0%
!! TATTAATGGATGTACATGTT+GGG + chr4_4:46168275-46168294 Msa0683550:intron 25.0%
! GAATCAGAAAAATTACATTG+TGG + chr4_4:46168365-46168384 Msa0683550:intron 25.0%
!! GAACATGATTTTTCCATTTT+AGG + chr4_4:46168971-46168990 Msa0683550:CDS 25.0%
! AACAAGAAATGTGTAATGTT+AGG + chr4_4:46169230-46169249 Msa0683550:CDS 25.0%
! ACAAGAAATGTGTAATGTTA+GGG + chr4_4:46169231-46169250 Msa0683550:CDS 25.0%
! TTAGGGAACAAAATGAAAAT+AGG + chr4_4:46169248-46169267 Msa0683550:CDS 25.0%
! TAGGGAACAAAATGAAAATA+GGG + chr4_4:46169249-46169268 Msa0683550:CDS 25.0%
!!! AATGAAAATAGGGTTTTGTT+AGG + chr4_4:46169259-46169278 Msa0683550:CDS 25.0%
! CCTCTTAAATCTTTATATTG+CGG + chr4_4:46169522-46169541 Msa0683550:three_prime_UTR 25.0%
! AGGTAAGTAATGAAAATCTA+AGG - chr4_4:46167656-46167675 None:intergenic 25.0%
! TGAATAAGGAAATGAAAGAA+AGG - chr4_4:46167750-46167769 None:intergenic 25.0%
!!! CTAGAGATAAAAAAGTGTTA+TGG - chr4_4:46167787-46167806 None:intergenic 25.0%
!!! TTGATTAAGAAGTGTTTGTA+TGG + chr4_4:46167819-46167838 Msa0683550:exon 25.0%
!!! TGATTAAGAAGTGTTTGTAT+GGG + chr4_4:46167820-46167839 Msa0683550:exon 25.0%
! GTAGTACTAAAAATTCATGA+AGG - chr4_4:46167970-46167989 None:intergenic 25.0%
!!! CATGAATTTTTAGTACTACT+TGG + chr4_4:46167971-46167990 Msa0683550:intron 25.0%
! TGTATATACTATACTACTCA+TGG + chr4_4:46168102-46168121 Msa0683550:intron 25.0%
! ATATTTGATGGAATAAAGTC+AGG + chr4_4:46168168-46168187 Msa0683550:intron 25.0%
! TATTTGATGGAATAAAGTCA+GGG + chr4_4:46168169-46168188 Msa0683550:intron 25.0%
!! TTACTTTATTTGATCTAGAG+GGG - chr4_4:46168237-46168256 None:intergenic 25.0%
!! TTATTAATGGATGTACATGT+TGG + chr4_4:46168274-46168293 Msa0683550:intron 25.0%
!! TATTAATGGATGTACATGTT+GGG + chr4_4:46168275-46168294 Msa0683550:intron 25.0%
! GAATCAGAAAAATTACATTG+TGG + chr4_4:46168365-46168384 Msa0683550:intron 25.0%
!! GAACATGATTTTTCCATTTT+AGG + chr4_4:46168971-46168990 Msa0683550:CDS 25.0%
! AACAAGAAATGTGTAATGTT+AGG + chr4_4:46169230-46169249 Msa0683550:CDS 25.0%
! ACAAGAAATGTGTAATGTTA+GGG + chr4_4:46169231-46169250 Msa0683550:CDS 25.0%
! TTAGGGAACAAAATGAAAAT+AGG + chr4_4:46169248-46169267 Msa0683550:CDS 25.0%
! TAGGGAACAAAATGAAAATA+GGG + chr4_4:46169249-46169268 Msa0683550:CDS 25.0%
!!! AATGAAAATAGGGTTTTGTT+AGG + chr4_4:46169259-46169278 Msa0683550:CDS 25.0%
! CCTCTTAAATCTTTATATTG+CGG + chr4_4:46169522-46169541 Msa0683550:three_prime_UTR 25.0%
! AATTTTGTCGTACAAGATGA+TGG - chr4_4:46167573-46167592 None:intergenic 30.0%
AGAAAAGAAAAGGATAGAGA+TGG - chr4_4:46167714-46167733 None:intergenic 30.0%
ATGAAAGAAAGGAAAGTTTG+AGG - chr4_4:46167739-46167758 None:intergenic 30.0%
!! GATTAAGAAGTGTTTGTATG+GGG + chr4_4:46167821-46167840 Msa0683550:exon 30.0%
AAATTCATGAAGGACAAAGA+TGG - chr4_4:46167960-46167979 None:intergenic 30.0%
GCTATATACATATGGTTCAT+AGG - chr4_4:46168133-46168152 None:intergenic 30.0%
ATGAACCATATGTATATAGC+TGG + chr4_4:46168133-46168152 Msa0683550:intron 30.0%
TGAACCATATGTATATAGCT+GGG + chr4_4:46168134-46168153 Msa0683550:intron 30.0%
GGCCTAGAATTAATATTTGA+TGG + chr4_4:46168156-46168175 Msa0683550:intron 30.0%
ACACAACACAACAAATTTAG+TGG - chr4_4:46168541-46168560 None:intergenic 30.0%
ATTGTTAAGAATACCACATG+AGG - chr4_4:46169011-46169030 None:intergenic 30.0%
TGTGGTATTCTTAACAATCA+TGG + chr4_4:46169013-46169032 Msa0683550:CDS 30.0%
ATGCTCATTTCATGATCATA+AGG - chr4_4:46169175-46169194 None:intergenic 30.0%
! CAATAATGGAGACACAAATA+TGG + chr4_4:46169297-46169316 Msa0683550:CDS 30.0%
! TGATATTTAGAATCACGAGA+CGG - chr4_4:46169412-46169431 None:intergenic 30.0%
CCGCAATATAAAGATTTAAG+AGG - chr4_4:46169525-46169544 None:intergenic 30.0%
! TTTGACAATTTAAGGTGCAA+AGG - chr4_4:46169702-46169721 None:intergenic 30.0%
!!! TGCTGCTAGTGTTTTTTAAT+TGG + chr4_4:46169728-46169747 Msa0683550:three_prime_UTR 30.0%
! AATTTTGTCGTACAAGATGA+TGG - chr4_4:46167573-46167592 None:intergenic 30.0%
AGAAAAGAAAAGGATAGAGA+TGG - chr4_4:46167714-46167733 None:intergenic 30.0%
ATGAAAGAAAGGAAAGTTTG+AGG - chr4_4:46167739-46167758 None:intergenic 30.0%
!! GATTAAGAAGTGTTTGTATG+GGG + chr4_4:46167821-46167840 Msa0683550:exon 30.0%
AAATTCATGAAGGACAAAGA+TGG - chr4_4:46167960-46167979 None:intergenic 30.0%
GCTATATACATATGGTTCAT+AGG - chr4_4:46168133-46168152 None:intergenic 30.0%
ATGAACCATATGTATATAGC+TGG + chr4_4:46168133-46168152 Msa0683550:intron 30.0%
TGAACCATATGTATATAGCT+GGG + chr4_4:46168134-46168153 Msa0683550:intron 30.0%
GGCCTAGAATTAATATTTGA+TGG + chr4_4:46168156-46168175 Msa0683550:intron 30.0%
ACACAACACAACAAATTTAG+TGG - chr4_4:46168541-46168560 None:intergenic 30.0%
ATTGTTAAGAATACCACATG+AGG - chr4_4:46169011-46169030 None:intergenic 30.0%
TGTGGTATTCTTAACAATCA+TGG + chr4_4:46169013-46169032 Msa0683550:CDS 30.0%
ATGCTCATTTCATGATCATA+AGG - chr4_4:46169175-46169194 None:intergenic 30.0%
! CAATAATGGAGACACAAATA+TGG + chr4_4:46169297-46169316 Msa0683550:CDS 30.0%
! TGATATTTAGAATCACGAGA+CGG - chr4_4:46169412-46169431 None:intergenic 30.0%
CCGCAATATAAAGATTTAAG+AGG - chr4_4:46169525-46169544 None:intergenic 30.0%
! TTTGACAATTTAAGGTGCAA+AGG - chr4_4:46169702-46169721 None:intergenic 30.0%
!!! TGCTGCTAGTGTTTTTTAAT+TGG + chr4_4:46169728-46169747 Msa0683550:three_prime_UTR 30.0%
TCATTACTCTTTCTCTCTCT+TGG + chr4_4:46167602-46167621 Msa0683550:five_prime_UTR 35.0%
CATTACTCTTTCTCTCTCTT+GGG + chr4_4:46167603-46167622 Msa0683550:five_prime_UTR 35.0%
GTTTGAGGAGAGAAAAGAAA+AGG - chr4_4:46167724-46167743 None:intergenic 35.0%
ACTACTTGGAAGAATGAACA+AGG + chr4_4:46167985-46168004 Msa0683550:intron 35.0%
GAACCATATGTATATAGCTG+GGG + chr4_4:46168135-46168154 Msa0683550:intron 35.0%
TTAGCATCTTCATCTTTGTG+AGG + chr4_4:46168211-46168230 Msa0683550:intron 35.0%
CAAGACTTGCAGAAATATCT+TGG - chr4_4:46168728-46168747 None:intergenic 35.0%
! GATATTTCTGCAAGTCTTGT+AGG + chr4_4:46168729-46168748 Msa0683550:CDS 35.0%
TGTAGGAGATATTGGACTAA+AGG + chr4_4:46168746-46168765 Msa0683550:CDS 35.0%
TGGAATCATAGGACATTGAA+GGG - chr4_4:46168895-46168914 None:intergenic 35.0%
TTGGAATCATAGGACATTGA+AGG - chr4_4:46168896-46168915 None:intergenic 35.0%
TGTGAGATCATTGGAATCAT+AGG - chr4_4:46168906-46168925 None:intergenic 35.0%
TAATGCTAGTGTGAGATCAT+TGG - chr4_4:46168915-46168934 None:intergenic 35.0%
!! GTTGGTTTGGTTTCCTAAAA+TGG - chr4_4:46168987-46169006 None:intergenic 35.0%
TGTGCAGAATCTTTACTACA+TGG + chr4_4:46169096-46169115 Msa0683550:CDS 35.0%
GTGCAGAATCTTTACTACAT+GGG + chr4_4:46169097-46169116 Msa0683550:CDS 35.0%
TGCAGAATCTTTACTACATG+GGG + chr4_4:46169098-46169117 Msa0683550:CDS 35.0%
!! GTTGATAATGGCAATGCTAA+TGG + chr4_4:46169124-46169143 Msa0683550:CDS 35.0%
AATGCTAATGGCAATGGTAA+TGG + chr4_4:46169136-46169155 Msa0683550:CDS 35.0%
TTTCCATGGCAGTTCAATAA+TGG + chr4_4:46169283-46169302 Msa0683550:CDS 35.0%
AGACACAAATATGGCTGAAA+TGG + chr4_4:46169306-46169325 Msa0683550:CDS 35.0%
ATGGCTGAAATGGATCATTT+AGG + chr4_4:46169316-46169335 Msa0683550:CDS 35.0%
TTATATTGCGGCTGCAATTA+CGG + chr4_4:46169534-46169553 Msa0683550:three_prime_UTR 35.0%
! TGGACTGCAATTTAGAACTA+TGG + chr4_4:46169560-46169579 Msa0683550:three_prime_UTR 35.0%
! ACACCATACCTTAGTTTGAT+AGG + chr4_4:46169583-46169602 Msa0683550:three_prime_UTR 35.0%
! CACCATACCTTAGTTTGATA+GGG + chr4_4:46169584-46169603 Msa0683550:three_prime_UTR 35.0%
TTCCCTATCAAACTAAGGTA+TGG - chr4_4:46169589-46169608 None:intergenic 35.0%
ATCACTTCCCTATCAAACTA+AGG - chr4_4:46169594-46169613 None:intergenic 35.0%
TCATTACTCTTTCTCTCTCT+TGG + chr4_4:46167602-46167621 Msa0683550:five_prime_UTR 35.0%
CATTACTCTTTCTCTCTCTT+GGG + chr4_4:46167603-46167622 Msa0683550:five_prime_UTR 35.0%
GTTTGAGGAGAGAAAAGAAA+AGG - chr4_4:46167724-46167743 None:intergenic 35.0%
ACTACTTGGAAGAATGAACA+AGG + chr4_4:46167985-46168004 Msa0683550:intron 35.0%
GAACCATATGTATATAGCTG+GGG + chr4_4:46168135-46168154 Msa0683550:intron 35.0%
TTAGCATCTTCATCTTTGTG+AGG + chr4_4:46168211-46168230 Msa0683550:intron 35.0%
CAAGACTTGCAGAAATATCT+TGG - chr4_4:46168728-46168747 None:intergenic 35.0%
! GATATTTCTGCAAGTCTTGT+AGG + chr4_4:46168729-46168748 Msa0683550:CDS 35.0%
TGTAGGAGATATTGGACTAA+AGG + chr4_4:46168746-46168765 Msa0683550:CDS 35.0%
TGGAATCATAGGACATTGAA+GGG - chr4_4:46168895-46168914 None:intergenic 35.0%
TTGGAATCATAGGACATTGA+AGG - chr4_4:46168896-46168915 None:intergenic 35.0%
TGTGAGATCATTGGAATCAT+AGG - chr4_4:46168906-46168925 None:intergenic 35.0%
TAATGCTAGTGTGAGATCAT+TGG - chr4_4:46168915-46168934 None:intergenic 35.0%
!! GTTGGTTTGGTTTCCTAAAA+TGG - chr4_4:46168987-46169006 None:intergenic 35.0%
TGTGCAGAATCTTTACTACA+TGG + chr4_4:46169096-46169115 Msa0683550:CDS 35.0%
GTGCAGAATCTTTACTACAT+GGG + chr4_4:46169097-46169116 Msa0683550:CDS 35.0%
TGCAGAATCTTTACTACATG+GGG + chr4_4:46169098-46169117 Msa0683550:CDS 35.0%
!! GTTGATAATGGCAATGCTAA+TGG + chr4_4:46169124-46169143 Msa0683550:CDS 35.0%
AATGCTAATGGCAATGGTAA+TGG + chr4_4:46169136-46169155 Msa0683550:CDS 35.0%
TTTCCATGGCAGTTCAATAA+TGG + chr4_4:46169283-46169302 Msa0683550:CDS 35.0%
AGACACAAATATGGCTGAAA+TGG + chr4_4:46169306-46169325 Msa0683550:CDS 35.0%
ATGGCTGAAATGGATCATTT+AGG + chr4_4:46169316-46169335 Msa0683550:CDS 35.0%
TTATATTGCGGCTGCAATTA+CGG + chr4_4:46169534-46169553 Msa0683550:three_prime_UTR 35.0%
! TGGACTGCAATTTAGAACTA+TGG + chr4_4:46169560-46169579 Msa0683550:three_prime_UTR 35.0%
! ACACCATACCTTAGTTTGAT+AGG + chr4_4:46169583-46169602 Msa0683550:three_prime_UTR 35.0%
! CACCATACCTTAGTTTGATA+GGG + chr4_4:46169584-46169603 Msa0683550:three_prime_UTR 35.0%
TTCCCTATCAAACTAAGGTA+TGG - chr4_4:46169589-46169608 None:intergenic 35.0%
ATCACTTCCCTATCAAACTA+AGG - chr4_4:46169594-46169613 None:intergenic 35.0%
! TGATGATGCAAAGTGAAGTG+AGG - chr4_4:46167676-46167695 None:intergenic 40.0%
!! AAGAAGTGTTTGTATGGGGA+TGG + chr4_4:46167825-46167844 Msa0683550:exon 40.0%
! TTCTTCTAGTGGACAACAAC+AGG + chr4_4:46167849-46167868 Msa0683550:CDS 40.0%
TCATGAAGGACAAAGATGGA+AGG - chr4_4:46167956-46167975 None:intergenic 40.0%
! TCTTCTTTGAAGAACACCCT+TGG + chr4_4:46168035-46168054 Msa0683550:intron 40.0%
TTGATGGAATAAAGTCAGGG+AGG + chr4_4:46168172-46168191 Msa0683550:intron 40.0%
GCAAATGTCTAACCAGTCAT+TGG + chr4_4:46168568-46168587 Msa0683550:intron 40.0%
TTAACATGCTCTCCAATGAC+TGG - chr4_4:46168583-46168602 None:intergenic 40.0%
!!! CATTTTAGAGCTTCTGGTTG+AGG - chr4_4:46168644-46168663 None:intergenic 40.0%
!!! CTTGGACATTTTAGAGCTTC+TGG - chr4_4:46168650-46168669 None:intergenic 40.0%
!! GTGTTGTTTGAGTCACATCT+TGG - chr4_4:46168668-46168687 None:intergenic 40.0%
! GCAAGTCTTGTAGGAGATAT+TGG + chr4_4:46168738-46168757 Msa0683550:CDS 40.0%
AGGAGATATTGGACTAAAGG+TGG + chr4_4:46168749-46168768 Msa0683550:CDS 40.0%
ACACTAAGGAATGTTCCTGT+TGG + chr4_4:46168773-46168792 Msa0683550:CDS 40.0%
TAAGGAATGTTCCTGTTGGT+GGG + chr4_4:46168777-46168796 Msa0683550:CDS 40.0%
CATCATCAGCTTCATCAAAG+AGG + chr4_4:46168822-46168841 Msa0683550:CDS 40.0%
!! GGATTTGGGTTGGTTTGAAA+TGG - chr4_4:46168860-46168879 None:intergenic 40.0%
! GGAAACAAGTGAGTGGATTT+GGG - chr4_4:46168874-46168893 None:intergenic 40.0%
ATTGAAGGGAAACAAGTGAG+TGG - chr4_4:46168881-46168900 None:intergenic 40.0%
ATCTCACACTAGCATTAGCT+AGG + chr4_4:46168918-46168937 Msa0683550:CDS 40.0%
AGCATTAGCTAGGCTTCAAA+AGG + chr4_4:46168928-46168947 Msa0683550:CDS 40.0%
GCATTAGCTAGGCTTCAAAA+GGG + chr4_4:46168929-46168948 Msa0683550:CDS 40.0%
AAGAATACCACATGAGGTGT+TGG - chr4_4:46169005-46169024 None:intergenic 40.0%
AACCATTCCTCAAACAACCA+TGG + chr4_4:46169040-46169059 Msa0683550:CDS 40.0%
ATCCATGGTTGTTTGAGGAA+TGG - chr4_4:46169045-46169064 None:intergenic 40.0%
GAAGAATCCATGGTTGTTTG+AGG - chr4_4:46169050-46169069 None:intergenic 40.0%
TAAGTGCTTCGAAGAATCCA+TGG - chr4_4:46169060-46169079 None:intergenic 40.0%
! TGGATTCTTCGAAGCACTTA+TGG + chr4_4:46169060-46169079 Msa0683550:CDS 40.0%
! GGATTCTTCGAAGCACTTAT+GGG + chr4_4:46169061-46169080 Msa0683550:CDS 40.0%
GCAGAATCTTTACTACATGG+GGG + chr4_4:46169099-46169118 Msa0683550:CDS 40.0%
AATGGCAATGCTAATGGCAA+TGG + chr4_4:46169130-46169149 Msa0683550:CDS 40.0%
!!! GGGTTTTGTTAGGTTTTCCA+TGG + chr4_4:46169269-46169288 Msa0683550:CDS 40.0%
TCTCCATTATTGAACTGCCA+TGG - chr4_4:46169289-46169308 None:intergenic 40.0%
ATGGATCATTTAGGAAGAGC+TGG + chr4_4:46169325-46169344 Msa0683550:CDS 40.0%
ATCATTTAGGAAGAGCTGGT+TGG + chr4_4:46169329-46169348 Msa0683550:CDS 40.0%
GAATGGTCTCACTTCATCTT+GGG + chr4_4:46169351-46169370 Msa0683550:CDS 40.0%
AATGGTCTCACTTCATCTTG+GGG + chr4_4:46169352-46169371 Msa0683550:CDS 40.0%
TGAACCTTAATAGTGCGACA+AGG + chr4_4:46169447-46169466 Msa0683550:three_prime_UTR 40.0%
ATTGCCTTGTCGCACTATTA+AGG - chr4_4:46169454-46169473 None:intergenic 40.0%
GACTAATGCAGTTGCAATTG+CGG + chr4_4:46169479-46169498 Msa0683550:three_prime_UTR 40.0%
GCTAACCAAGTCAATGAAGT+TGG + chr4_4:46169786-46169805 Msa0683550:three_prime_UTR 40.0%
! TCTCTCCAACTTCATTGACT+TGG - chr4_4:46169794-46169813 None:intergenic 40.0%
! TGATGATGCAAAGTGAAGTG+AGG - chr4_4:46167676-46167695 None:intergenic 40.0%
!! AAGAAGTGTTTGTATGGGGA+TGG + chr4_4:46167825-46167844 Msa0683550:exon 40.0%
! TTCTTCTAGTGGACAACAAC+AGG + chr4_4:46167849-46167868 Msa0683550:CDS 40.0%
TCATGAAGGACAAAGATGGA+AGG - chr4_4:46167956-46167975 None:intergenic 40.0%
! TCTTCTTTGAAGAACACCCT+TGG + chr4_4:46168035-46168054 Msa0683550:intron 40.0%
TTGATGGAATAAAGTCAGGG+AGG + chr4_4:46168172-46168191 Msa0683550:intron 40.0%
GCAAATGTCTAACCAGTCAT+TGG + chr4_4:46168568-46168587 Msa0683550:intron 40.0%
TTAACATGCTCTCCAATGAC+TGG - chr4_4:46168583-46168602 None:intergenic 40.0%
!!! CATTTTAGAGCTTCTGGTTG+AGG - chr4_4:46168644-46168663 None:intergenic 40.0%
!!! CTTGGACATTTTAGAGCTTC+TGG - chr4_4:46168650-46168669 None:intergenic 40.0%
!! GTGTTGTTTGAGTCACATCT+TGG - chr4_4:46168668-46168687 None:intergenic 40.0%
! GCAAGTCTTGTAGGAGATAT+TGG + chr4_4:46168738-46168757 Msa0683550:CDS 40.0%
AGGAGATATTGGACTAAAGG+TGG + chr4_4:46168749-46168768 Msa0683550:CDS 40.0%
ACACTAAGGAATGTTCCTGT+TGG + chr4_4:46168773-46168792 Msa0683550:CDS 40.0%
TAAGGAATGTTCCTGTTGGT+GGG + chr4_4:46168777-46168796 Msa0683550:CDS 40.0%
CATCATCAGCTTCATCAAAG+AGG + chr4_4:46168822-46168841 Msa0683550:CDS 40.0%
!! GGATTTGGGTTGGTTTGAAA+TGG - chr4_4:46168860-46168879 None:intergenic 40.0%
! GGAAACAAGTGAGTGGATTT+GGG - chr4_4:46168874-46168893 None:intergenic 40.0%
ATTGAAGGGAAACAAGTGAG+TGG - chr4_4:46168881-46168900 None:intergenic 40.0%
ATCTCACACTAGCATTAGCT+AGG + chr4_4:46168918-46168937 Msa0683550:CDS 40.0%
AGCATTAGCTAGGCTTCAAA+AGG + chr4_4:46168928-46168947 Msa0683550:CDS 40.0%
GCATTAGCTAGGCTTCAAAA+GGG + chr4_4:46168929-46168948 Msa0683550:CDS 40.0%
AAGAATACCACATGAGGTGT+TGG - chr4_4:46169005-46169024 None:intergenic 40.0%
AACCATTCCTCAAACAACCA+TGG + chr4_4:46169040-46169059 Msa0683550:CDS 40.0%
ATCCATGGTTGTTTGAGGAA+TGG - chr4_4:46169045-46169064 None:intergenic 40.0%
GAAGAATCCATGGTTGTTTG+AGG - chr4_4:46169050-46169069 None:intergenic 40.0%
TAAGTGCTTCGAAGAATCCA+TGG - chr4_4:46169060-46169079 None:intergenic 40.0%
! TGGATTCTTCGAAGCACTTA+TGG + chr4_4:46169060-46169079 Msa0683550:CDS 40.0%
! GGATTCTTCGAAGCACTTAT+GGG + chr4_4:46169061-46169080 Msa0683550:CDS 40.0%
GCAGAATCTTTACTACATGG+GGG + chr4_4:46169099-46169118 Msa0683550:CDS 40.0%
AATGGCAATGCTAATGGCAA+TGG + chr4_4:46169130-46169149 Msa0683550:CDS 40.0%
!!! GGGTTTTGTTAGGTTTTCCA+TGG + chr4_4:46169269-46169288 Msa0683550:CDS 40.0%
TCTCCATTATTGAACTGCCA+TGG - chr4_4:46169289-46169308 None:intergenic 40.0%
ATGGATCATTTAGGAAGAGC+TGG + chr4_4:46169325-46169344 Msa0683550:CDS 40.0%
ATCATTTAGGAAGAGCTGGT+TGG + chr4_4:46169329-46169348 Msa0683550:CDS 40.0%
GAATGGTCTCACTTCATCTT+GGG + chr4_4:46169351-46169370 Msa0683550:CDS 40.0%
AATGGTCTCACTTCATCTTG+GGG + chr4_4:46169352-46169371 Msa0683550:CDS 40.0%
TGAACCTTAATAGTGCGACA+AGG + chr4_4:46169447-46169466 Msa0683550:three_prime_UTR 40.0%
ATTGCCTTGTCGCACTATTA+AGG - chr4_4:46169454-46169473 None:intergenic 40.0%
GACTAATGCAGTTGCAATTG+CGG + chr4_4:46169479-46169498 Msa0683550:three_prime_UTR 40.0%
GCTAACCAAGTCAATGAAGT+TGG + chr4_4:46169786-46169805 Msa0683550:three_prime_UTR 40.0%
! TCTCTCCAACTTCATTGACT+TGG - chr4_4:46169794-46169813 None:intergenic 40.0%
!! GTCGTACAAGATGATGGATG+AGG - chr4_4:46167567-46167586 None:intergenic 45.0%
! ATGGGGATGGATTCTTCTAG+TGG + chr4_4:46167838-46167857 Msa0683550:CDS 45.0%
AGGCCCCAGCTATATACATA+TGG - chr4_4:46168141-46168160 None:intergenic 45.0%
! TTTAGAGCTTCTGGTTGAGG+AGG - chr4_4:46168641-46168660 None:intergenic 45.0%
GGACTAAAGGTGGTACACTA+AGG + chr4_4:46168759-46168778 Msa0683550:CDS 45.0%
CTAAGGAATGTTCCTGTTGG+TGG + chr4_4:46168776-46168795 Msa0683550:CDS 45.0%
AAGGAATGTTCCTGTTGGTG+GGG + chr4_4:46168778-46168797 Msa0683550:CDS 45.0%
! ACAAGTGAGTGGATTTGGGT+TGG - chr4_4:46168870-46168889 None:intergenic 45.0%
! GGGAAACAAGTGAGTGGATT+TGG - chr4_4:46168875-46168894 None:intergenic 45.0%
AGGCTTCAAAAGGGTCAACT+TGG + chr4_4:46168938-46168957 Msa0683550:CDS 45.0%
AACCAAACCAACACCTCATG+TGG + chr4_4:46168995-46169014 Msa0683550:CDS 45.0%
!! TACCACATGAGGTGTTGGTT+TGG - chr4_4:46169000-46169019 None:intergenic 45.0%
GAATCTTTACTACATGGGGG+AGG + chr4_4:46169102-46169121 Msa0683550:CDS 45.0%
!! TACATGGGGGAGGTTGATAA+TGG + chr4_4:46169112-46169131 Msa0683550:CDS 45.0%
TTAGGAAGAGCTGGTTGGAA+TGG + chr4_4:46169334-46169353 Msa0683550:CDS 45.0%
GGAATGGTCTCACTTCATCT+TGG + chr4_4:46169350-46169369 Msa0683550:CDS 45.0%
ATGGTCTCACTTCATCTTGG+GGG + chr4_4:46169353-46169372 Msa0683550:CDS 45.0%
ACATTAGGGGGCTATTGAGA+AGG - chr4_4:46169384-46169403 None:intergenic 45.0%
ACGAGACGGTGTCTACATTA+GGG - chr4_4:46169398-46169417 None:intergenic 45.0%
AGTTGCAATTGCGGTTGTGA+TGG + chr4_4:46169488-46169507 Msa0683550:three_prime_UTR 45.0%
!! GTCGTACAAGATGATGGATG+AGG - chr4_4:46167567-46167586 None:intergenic 45.0%
! ATGGGGATGGATTCTTCTAG+TGG + chr4_4:46167838-46167857 Msa0683550:CDS 45.0%
AGGCCCCAGCTATATACATA+TGG - chr4_4:46168141-46168160 None:intergenic 45.0%
! TTTAGAGCTTCTGGTTGAGG+AGG - chr4_4:46168641-46168660 None:intergenic 45.0%
GGACTAAAGGTGGTACACTA+AGG + chr4_4:46168759-46168778 Msa0683550:CDS 45.0%
CTAAGGAATGTTCCTGTTGG+TGG + chr4_4:46168776-46168795 Msa0683550:CDS 45.0%
AAGGAATGTTCCTGTTGGTG+GGG + chr4_4:46168778-46168797 Msa0683550:CDS 45.0%
! ACAAGTGAGTGGATTTGGGT+TGG - chr4_4:46168870-46168889 None:intergenic 45.0%
! GGGAAACAAGTGAGTGGATT+TGG - chr4_4:46168875-46168894 None:intergenic 45.0%
AGGCTTCAAAAGGGTCAACT+TGG + chr4_4:46168938-46168957 Msa0683550:CDS 45.0%
AACCAAACCAACACCTCATG+TGG + chr4_4:46168995-46169014 Msa0683550:CDS 45.0%
!! TACCACATGAGGTGTTGGTT+TGG - chr4_4:46169000-46169019 None:intergenic 45.0%
GAATCTTTACTACATGGGGG+AGG + chr4_4:46169102-46169121 Msa0683550:CDS 45.0%
!! TACATGGGGGAGGTTGATAA+TGG + chr4_4:46169112-46169131 Msa0683550:CDS 45.0%
TTAGGAAGAGCTGGTTGGAA+TGG + chr4_4:46169334-46169353 Msa0683550:CDS 45.0%
GGAATGGTCTCACTTCATCT+TGG + chr4_4:46169350-46169369 Msa0683550:CDS 45.0%
ATGGTCTCACTTCATCTTGG+GGG + chr4_4:46169353-46169372 Msa0683550:CDS 45.0%
ACATTAGGGGGCTATTGAGA+AGG - chr4_4:46169384-46169403 None:intergenic 45.0%
ACGAGACGGTGTCTACATTA+GGG - chr4_4:46169398-46169417 None:intergenic 45.0%
AGTTGCAATTGCGGTTGTGA+TGG + chr4_4:46169488-46169507 Msa0683550:three_prime_UTR 45.0%
!! AAAAATTGAAAATTTATTAA+TGG + chr4_4:46168261-46168280 Msa0683550:intron 5.0%
!! AAAAATTGAAAATTTATTAA+TGG + chr4_4:46168261-46168280 Msa0683550:intron 5.0%
!! GCTTCTGGTTGAGGAGGTTT+TGG - chr4_4:46168635-46168654 None:intergenic 50.0%
! AGGAATGTTCCTGTTGGTGG+GGG + chr4_4:46168779-46168798 Msa0683550:CDS 50.0%
GAGACGGTGTCTACATTAGG+GGG - chr4_4:46169396-46169415 None:intergenic 50.0%
CGAGACGGTGTCTACATTAG+GGG - chr4_4:46169397-46169416 None:intergenic 50.0%
CACGAGACGGTGTCTACATT+AGG - chr4_4:46169399-46169418 None:intergenic 50.0%
TGCGGCTGCAATTACGGTTA+TGG + chr4_4:46169540-46169559 Msa0683550:three_prime_UTR 50.0%
!! GCTTCTGGTTGAGGAGGTTT+TGG - chr4_4:46168635-46168654 None:intergenic 50.0%
! AGGAATGTTCCTGTTGGTGG+GGG + chr4_4:46168779-46168798 Msa0683550:CDS 50.0%
GAGACGGTGTCTACATTAGG+GGG - chr4_4:46169396-46169415 None:intergenic 50.0%
CGAGACGGTGTCTACATTAG+GGG - chr4_4:46169397-46169416 None:intergenic 50.0%
CACGAGACGGTGTCTACATT+AGG - chr4_4:46169399-46169418 None:intergenic 50.0%
TGCGGCTGCAATTACGGTTA+TGG + chr4_4:46169540-46169559 Msa0683550:three_prime_UTR 50.0%
! GGAATGTTCCTGTTGGTGGG+GGG + chr4_4:46168780-46168799 Msa0683550:CDS 55.0%
TTTCTACACCCCCCACCAAC+AGG - chr4_4:46168791-46168810 None:intergenic 55.0%
CTCACTTCATCTTGGGGGCA+TGG + chr4_4:46169358-46169377 Msa0683550:CDS 55.0%
! GGAATGTTCCTGTTGGTGGG+GGG + chr4_4:46168780-46168799 Msa0683550:CDS 55.0%
TTTCTACACCCCCCACCAAC+AGG - chr4_4:46168791-46168810 None:intergenic 55.0%
CTCACTTCATCTTGGGGGCA+TGG + chr4_4:46169358-46169377 Msa0683550:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 46167538 46169818 46167538 ID=Msa0683550;Name=Msa0683550
chr4_4 mRNA 46167538 46169818 46167538 ID=Msa0683550-mRNA-1;Parent=Msa0683550;Name=Msa0683550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=300|1|1|1|1|1|2|413|289
chr4_4 exon 46167538 46167870 46167538 ID=Msa0683550-mRNA-1:exon:11342;Parent=Msa0683550-mRNA-1
chr4_4 exon 46168569 46169818 46168569 ID=Msa0683550-mRNA-1:exon:11343;Parent=Msa0683550-mRNA-1
chr4_4 five_prime_UTR 46167538 46167837 46167538 ID=Msa0683550-mRNA-1:five_prime_utr;Parent=Msa0683550-mRNA-1
chr4_4 CDS 46167838 46167870 46167838 ID=Msa0683550-mRNA-1:cds;Parent=Msa0683550-mRNA-1
chr4_4 CDS 46168569 46169405 46168569 ID=Msa0683550-mRNA-1:cds;Parent=Msa0683550-mRNA-1
chr4_4 three_prime_UTR 46169406 46169818 46169406 ID=Msa0683550-mRNA-1:three_prime_utr;Parent=Msa0683550-mRNA-1
Gene Sequence

>Msa0683550

ATGGGGATGGATTCTTCTAGTGGACAACAACAGCAAATGTCTAACCAGTCATTGGAGAGCATGTTAACATGTTCAAAAGCAGAACAAGACAAAAAGCCAAAACCTCCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAACAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACTAAAGGTGGTACACTAAGGAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCAGCTTCATCAAAGAGGTCTCAAGATCAACCATTTCAAACCAACCCAAATCCACTCACTTGTTTCCCTTCAATGTCCTATGATTCCAATGATCTCACACTAGCATTAGCTAGGCTTCAAAAGGGTCAACTTGGATTTGATCATGAACATGATTTTTCCATTTTAGGAAACCAAACCAACACCTCATGTGGTATTCTTAACAATCATGGTATGAACCATTCCTCAAACAACCATGGATTCTTCGAAGCACTTATGGGATCTCAAAACAATGTGCAGAATCTTTACTACATGGGGGAGGTTGATAATGGCAATGCTAATGGCAATGGTAATGGTGAGATGATGTTACCTTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTTACAGTTACTACTATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATGGAGACACAAATATGGCTGAAATGGATCATTTAGGAAGAGCTGGTTGGAATGGTCTCACTTCATCTTGGGGGCATGGCCTTCTCAATAGCCCCCTAATGTAG
Protein sequence

>Msa0683550

MGMDSSSGQQQQMSNQSLESMLTCSKAEQDKKPKPPQPEALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSASSKRSQDQPFQTNPNPLTCFPSMSYDSNDLTLALARLQKGQLGFDHEHDFSILGNQTNTSCGILNNHGMNHSSNNHGFFEALMGSQNNVQNLYYMGEVDNGNANGNGNGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNGDTNMAEMDHLGRAGWNGLTSSWGHGLLNSPLM*