AlfalfaGEDB | Msa0627400

M. sativa cultivar zhongmu-4 / Msa0627400

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0627400	XP_013456040.2	98.616	289	4	0	1	289	1	289	0.0	596

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0627400	sp\|Q8LE43\|DOF21_ARATH	41.083	314	122	11	10	289	4	288	1.15e-53	179

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0627400	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0602450	Msa0627400	0.906335	1.655436e-80	-8.615850e-47
Msa0627400	Msa0683550	0.918284	1.884094e-86	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0627400	MtrunA17_Chr4g0030051	98.616	289	4	0	1	289	1	289	0.0	596
Msa0627400	MtrunA17_Chr2g0326001	54.817	301	81	15	19	289	18	293	5.86e-85	256
Msa0627400	MtrunA17_Chr3g0117601	34.718	337	141	15	2	289	28	334	1.49e-35	130
Msa0627400	MtrunA17_Chr3g0127201	76.471	68	16	0	30	97	16	83	5.68e-34	125
Msa0627400	MtrunA17_Chr4g0031411	66.304	92	26	2	25	111	58	149	1.08e-33	125
Msa0627400	MtrunA17_Chr1g0188851	56.701	97	38	1	3	95	1	97	1.35e-33	124
Msa0627400	MtrunA17_Chr8g0341671	70.270	74	22	0	29	102	8	81	4.42e-32	118
Msa0627400	MtrunA17_Chr3g0126201	64.706	85	30	0	15	99	25	109	5.14e-32	120
Msa0627400	MtrunA17_Chr2g0328021	70.423	71	20	1	26	96	48	117	9.56e-32	119
Msa0627400	MtrunA17_Chr4g0010151	66.250	80	26	1	17	95	57	136	1.04e-31	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0627400	AT2G28510.1	41.083	314	122	11	10	289	4	288	1.17e-54	179
Msa0627400	AT5G60200.1	39.831	236	81	7	25	255	40	219	1.52e-42	147
Msa0627400	AT3G45610.1	35.156	256	109	9	1	255	11	210	4.20e-37	132
Msa0627400	AT1G51700.1	63.158	95	31	2	21	114	16	107	1.18e-34	124
Msa0627400	AT3G55370.3	71.429	77	21	1	25	100	104	180	6.70e-33	124
Msa0627400	AT3G55370.1	71.429	77	21	1	25	100	59	135	7.68e-33	123
Msa0627400	AT3G55370.2	71.429	77	21	1	25	100	59	135	1.28e-32	123
Msa0627400	AT5G02460.1	73.611	72	18	1	25	95	78	149	4.85e-32	122
Msa0627400	AT1G21340.1	65.116	86	18	1	40	113	37	122	7.33e-32	119
Msa0627400	AT1G07640.2	65.823	79	26	1	18	95	53	131	1.61e-31	120

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Find 104 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAAATGTGTAATGTT+AGG	0.357073	4_3:-7488953	Msa0627400:CDS
AACCAAACCAACACCTCATG+TGG	0.607094	4_3:-7489188	Msa0627400:CDS
AACCATTCCTCAAACAACCA+TGG	0.607175	4_3:-7489143	Msa0627400:CDS
AAGAAGTGTTTGTATGGGGA+TGG	0.488483	4_3:-7490364	Msa0627400:exon
AAGAATACCACATGAGGTGT+TGG	0.521494	4_3:+7489181	None:intergenic
AAGGAATGTTCCTGTTGGTG+GGG	0.558824	4_3:-7489405	Msa0627400:CDS
AATGCTAATGGCAATGGTAA+TGG	0.568080	4_3:-7489047	Msa0627400:CDS
AATGGCAATGCTAATGGCAA+TGG	0.626445	4_3:-7489053	Msa0627400:CDS
AATGGTCTCACTTCATCTTG+GGG	0.497543	4_3:-7488831	Msa0627400:CDS
ACAAGAAATGTGTAATGTTA+GGG	0.450520	4_3:-7488952	Msa0627400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAAGAAAAGGATAGAGA+TGG	+	chr4_3:7488563-7488582	None:intergenic	30.0%
ATGAAAGAAAGGAAAGTTTG+AGG	+	chr4_3:7488588-7488607	None:intergenic	30.0%
AAATTCATGAAGGACAAAGA+TGG	+	chr4_3:7488811-7488830	None:intergenic	30.0%
GGCCTAGAATTAATATTTGA+TGG	-	chr4_3:7489017-7489036	Msa0627400:CDS	30.0%
GAATCAGAAAAGTTACATTG+TGG	-	chr4_3:7489222-7489241	Msa0627400:CDS	30.0%
ATTGTTAAGAATACCACATG+AGG	+	chr4_3:7489866-7489885	None:intergenic	30.0%
TGTGGTATTCTTAACAATCA+TGG	-	chr4_3:7489868-7489887	Msa0627400:intron	30.0%
ATGCTCATTTCATGATCATA+AGG	+	chr4_3:7490030-7490049	None:intergenic	30.0%
CCGCAATATAAAGATTTAAG+AGG	+	chr4_3:7490380-7490399	None:intergenic	30.0%
AGAAAAGAAAAGGATAGAGA+TGG	+	chr4_3:7488563-7488582	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	7488388	7490672	7488388	ID=Msa0627400;Name=Msa0627400
chr4_3	mRNA	7488388	7490672	7488388	ID=Msa0627400-mRNA-1;Parent=Msa0627400;Name=Msa0627400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=299\|1\|1\|1\|1\|1\|2\|412\|289
chr4_3	exon	7488388	7489636	7488388	ID=Msa0627400-mRNA-1:exon:2207;Parent=Msa0627400-mRNA-1
chr4_3	exon	7490341	7490672	7490341	ID=Msa0627400-mRNA-1:exon:2206;Parent=Msa0627400-mRNA-1
chr4_3	five_prime_UTR	7490374	7490672	7490374	ID=Msa0627400-mRNA-1:five_prime_utr;Parent=Msa0627400-mRNA-1
chr4_3	CDS	7490341	7490373	7490341	ID=Msa0627400-mRNA-1:cds;Parent=Msa0627400-mRNA-1
chr4_3	CDS	7488800	7489636	7488800	ID=Msa0627400-mRNA-1:cds;Parent=Msa0627400-mRNA-1
chr4_3	three_prime_UTR	7488388	7488799	7488388	ID=Msa0627400-mRNA-1:three_prime_utr;Parent=Msa0627400-mRNA-1

Gene Sequence

>Msa0627400

ATGGGGATGGATTCTTCTAGTGGACAACAACAGCAAATGTCTAACCAGTCGTTGGAGAGCATGTTAACATGTTCAAAAGCAGAACAAGACAAAAAGCCGAAACCTCCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAACAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACTAAAGGTGGTACACTAAGGAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCAGCTTCATCAAAGAGGTCTCAAGATCAACCATTTCAAACCAACCCAAATCCACTCACTTGTTTCCCTTCAATGTCCTATGATTCCAATGATCTCACACTAGCATTAGCTAGGCTTCAAAAGGGTCAACTTGGATTTGATCATGAACATGATTTTTCCATTTTAGGAAACCAAACCAACACCTCATGTGGTATTCTTAACAATCATGGTATGAACCATTCCTCAAACAACCATGGATTCTTCGAAGCACTTATGGGATCTCAAAACAATGTGCAGAATCTTTACTACATGGGGGAGGTTGATAATGGCAATGCTAATGGCAATGGTAATGGTGAGATGATGTTACCTTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTTACAGTTACTACTATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATGGAGACACAAATATGGCTGAAATGGATCATTTAGGAAGAGCTGGTTGGAATGGTCTCACTTCATCTTGGGGGCATGGCCTTCTCAATAGCCCCCTAATGTAG

Protein sequence

>Msa0627400

MGMDSSSGQQQQMSNQSLESMLTCSKAEQDKKPKPPQPEALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSASSKRSQDQPFQTNPNPLTCFPSMSYDSNDLTLALARLQKGQLGFDHEHDFSILGNQTNTSCGILNNHGMNHSSNNHGFFEALMGSQNNVQNLYYMGEVDNGNANGNGNGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNGDTNMAEMDHLGRAGWNGLTSSWGHGLLNSPLM*