AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0627400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0627400 MtrunA17_Chr4g0030051 98.616 289 4 0 1 289 1 289 0.0 596
Msa0627400 MtrunA17_Chr2g0326001 54.817 301 81 15 19 289 18 293 5.86e-85 256
Msa0627400 MtrunA17_Chr3g0117601 34.718 337 141 15 2 289 28 334 1.49e-35 130
Msa0627400 MtrunA17_Chr3g0127201 76.471 68 16 0 30 97 16 83 5.68e-34 125
Msa0627400 MtrunA17_Chr4g0031411 66.304 92 26 2 25 111 58 149 1.08e-33 125
Msa0627400 MtrunA17_Chr1g0188851 56.701 97 38 1 3 95 1 97 1.35e-33 124
Msa0627400 MtrunA17_Chr8g0341671 70.270 74 22 0 29 102 8 81 4.42e-32 118
Msa0627400 MtrunA17_Chr3g0126201 64.706 85 30 0 15 99 25 109 5.14e-32 120
Msa0627400 MtrunA17_Chr2g0328021 70.423 71 20 1 26 96 48 117 9.56e-32 119
Msa0627400 MtrunA17_Chr4g0010151 66.250 80 26 1 17 95 57 136 1.04e-31 120
Msa0627400 MtrunA17_Chr4g0047001 59.596 99 30 2 42 130 56 154 1.19e-31 120
Msa0627400 MtrunA17_Chr8g0346551 66.234 77 24 1 23 99 8 82 2.04e-31 117
Msa0627400 MtrunA17_Chr7g0237921 68.831 77 23 1 20 95 54 130 7.04e-31 118
Msa0627400 MtrunA17_Chr1g0177251 67.949 78 22 1 43 117 14 91 8.85e-31 116
Msa0627400 MtrunA17_Chr2g0282441 85.965 57 6 1 36 92 22 76 9.66e-31 117
Msa0627400 MtrunA17_Chr8g0374251 82.143 56 10 0 39 94 66 121 1.52e-30 117
Msa0627400 MtrunA17_Chr8g0367161 61.538 78 30 0 37 114 28 105 1.94e-30 117
Msa0627400 MtrunA17_Chr7g0223311 72.857 70 18 1 40 108 76 145 1.77e-29 115
Msa0627400 MtrunA17_Chr5g0411951 80.702 57 10 1 35 91 38 93 3.06e-29 113
Msa0627400 MtrunA17_Chr8g0374111 70.588 68 18 1 32 97 18 85 3.44e-29 110
Msa0627400 MtrunA17_Chr4g0061761 86.792 53 7 0 39 91 38 90 3.53e-29 113
Msa0627400 MtrunA17_Chr2g0282511 90.000 50 5 0 40 89 44 93 4.37e-28 110
Msa0627400 MtrunA17_Chr2g0282051 60.465 86 31 2 10 95 17 99 2.30e-27 107
Msa0627400 MtrunA17_Chr2g0308011 88.000 50 6 0 40 89 36 85 3.21e-27 105
Msa0627400 MtrunA17_Chr4g0047761 80.702 57 10 1 39 95 70 125 1.66e-26 105
Msa0627400 MtrunA17_Chr3g0092111 66.197 71 23 1 29 99 125 194 8.86e-26 105
Msa0627400 MtrunA17_Chr7g0217581 67.143 70 22 1 29 98 221 289 1.31e-25 106
Msa0627400 MtrunA17_Chr5g0417571 59.740 77 30 1 29 105 127 202 3.63e-25 102
Msa0627400 MtrunA17_Chr6g0460731 51.042 96 45 2 4 98 59 153 3.66e-25 103
Msa0627400 MtrunA17_Chr6g0460721 48.315 89 45 1 10 98 59 146 5.48e-25 102
Msa0627400 MtrunA17_Chr6g0453321 52.174 92 43 1 7 98 103 193 4.67e-24 101
Msa0627400 MtrunA17_Chr7g0254161 60.563 71 27 1 28 98 89 158 5.97e-24 100
Msa0627400 MtrunA17_Chr4g0042481 54.321 81 33 1 19 99 104 180 7.77e-24 100
Msa0627400 MtrunA17_Chr8g0355261 60.294 68 26 1 29 96 107 173 2.60e-23 99.0
Msa0627400 MtrunA17_Chr2g0283811 67.857 56 18 0 39 94 45 100 7.34e-23 92.4
Msa0627400 MtrunA17_Chr5g0417551 59.211 76 27 1 25 100 115 186 5.02e-22 94.4
Msa0627400 MtrunA17_Chr5g0417561 59.211 76 27 1 25 100 107 178 6.54e-22 94.0
Msa0627400 MtrunA17_Chr5g0417601 58.571 70 28 1 25 94 125 193 1.00e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0627400 AT2G28510.1 41.083 314 122 11 10 289 4 288 1.17e-54 179
Msa0627400 AT5G60200.1 39.831 236 81 7 25 255 40 219 1.52e-42 147
Msa0627400 AT3G45610.1 35.156 256 109 9 1 255 11 210 4.20e-37 132
Msa0627400 AT1G51700.1 63.158 95 31 2 21 114 16 107 1.18e-34 124
Msa0627400 AT3G55370.3 71.429 77 21 1 25 100 104 180 6.70e-33 124
Msa0627400 AT3G55370.1 71.429 77 21 1 25 100 59 135 7.68e-33 123
Msa0627400 AT3G55370.2 71.429 77 21 1 25 100 59 135 1.28e-32 123
Msa0627400 AT5G02460.1 73.611 72 18 1 25 95 78 149 4.85e-32 122
Msa0627400 AT1G21340.1 65.116 86 18 1 40 113 37 122 7.33e-32 119
Msa0627400 AT1G07640.2 65.823 79 26 1 18 95 53 131 1.61e-31 120
Msa0627400 AT5G60850.1 72.000 75 19 1 39 111 49 123 1.80e-31 119
Msa0627400 AT4G24060.1 72.727 66 18 0 30 95 42 107 2.04e-31 120
Msa0627400 AT3G52440.1 59.574 94 33 1 43 136 27 115 2.29e-31 117
Msa0627400 AT1G07640.3 65.823 79 26 1 18 95 61 139 2.30e-31 119
Msa0627400 AT3G52440.2 59.574 94 33 1 43 136 46 134 2.81e-31 117
Msa0627400 AT3G61850.2 52.066 121 52 3 27 147 49 163 2.95e-31 118
Msa0627400 AT3G61850.3 52.066 121 52 3 27 147 49 163 2.95e-31 118
Msa0627400 AT3G61850.1 52.066 121 52 3 27 147 61 175 3.38e-31 118
Msa0627400 AT3G61850.5 52.066 121 52 3 27 147 49 163 3.75e-31 118
Msa0627400 AT3G61850.4 52.066 121 52 3 27 147 61 175 4.77e-31 118
Msa0627400 AT2G37590.1 67.123 73 23 1 25 96 72 144 5.61e-31 118
Msa0627400 AT1G07640.1 69.444 72 21 1 25 95 4 75 7.52e-31 117
Msa0627400 AT2G28810.2 71.642 67 18 1 26 92 63 128 7.78e-31 118
Msa0627400 AT2G28810.1 71.642 67 18 1 26 92 80 145 1.46e-30 117
Msa0627400 AT5G65590.1 80.328 61 12 0 41 101 41 101 1.66e-30 117
Msa0627400 AT5G62940.1 77.049 61 14 0 31 91 63 123 1.96e-30 117
Msa0627400 AT1G28310.1 87.273 55 7 0 41 95 27 81 7.55e-30 115
Msa0627400 AT1G28310.2 87.273 55 7 0 41 95 51 105 1.18e-29 115
Msa0627400 AT3G21270.1 90.566 53 5 0 41 93 29 81 3.35e-29 110
Msa0627400 AT4G38000.1 72.727 66 17 1 30 94 30 95 1.07e-28 110
Msa0627400 AT4G21050.1 69.118 68 21 0 38 105 21 88 1.16e-28 109
Msa0627400 AT3G50410.1 72.308 65 18 0 33 97 22 86 2.24e-28 109
Msa0627400 AT5G66940.1 58.511 94 29 3 37 123 28 118 5.64e-28 108
Msa0627400 AT4G00940.1 80.702 57 11 0 39 95 66 122 5.84e-28 109
Msa0627400 AT4G00940.3 80.702 57 11 0 39 95 66 122 5.84e-28 109
Msa0627400 AT4G00940.2 80.702 57 11 0 39 95 66 122 5.84e-28 109
Msa0627400 AT1G64620.1 72.131 61 17 0 30 90 38 98 2.66e-27 108
Msa0627400 AT2G46590.1 63.158 76 24 1 13 88 44 115 3.73e-27 108
Msa0627400 AT2G46590.2 63.158 76 24 1 13 88 56 127 4.66e-27 108
Msa0627400 AT1G47655.1 75.439 57 14 0 33 89 21 77 4.48e-26 102
Msa0627400 AT5G62430.1 47.959 98 45 2 3 100 22 113 1.78e-25 103
Msa0627400 AT3G47500.1 52.632 95 41 1 4 98 77 167 1.87e-25 105
Msa0627400 AT5G39660.3 61.333 75 25 1 24 98 125 195 2.47e-24 102
Msa0627400 AT5G39660.1 61.333 75 25 1 24 98 125 195 2.47e-24 102
Msa0627400 AT5G39660.2 61.333 75 25 1 24 98 125 195 2.47e-24 102
Msa0627400 AT4G21080.1 56.579 76 24 1 43 109 27 102 6.07e-24 97.8
Msa0627400 AT1G69570.1 53.488 86 36 1 9 94 104 185 6.44e-24 100
Msa0627400 AT4G21040.1 75.000 52 13 0 43 94 27 78 2.19e-23 95.9
Msa0627400 AT1G26790.1 55.263 76 33 1 20 94 89 164 2.86e-23 98.2
Msa0627400 AT2G34140.1 60.000 65 22 1 30 94 51 111 1.61e-22 92.0
Msa0627400 AT1G29160.1 66.071 56 19 0 39 94 60 115 2.76e-22 91.7
Msa0627400 AT4G21030.1 51.471 68 33 0 38 105 18 85 1.19e-15 74.3

Find 104 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTTTGGTTTCCTAAAA+TGG 0.139828 4_3:+7489199 None:intergenic
GGGAAACAAGTGAGTGGATT+TGG 0.231178 4_3:+7489311 None:intergenic
TTAGGGAACAAAATGAAAAT+AGG 0.240393 4_3:-7488935 Msa0627400:CDS
TGGATTCTTCGAAGCACTTA+TGG 0.247834 4_3:-7489123 Msa0627400:CDS
ATTGCCTTGTCGCACTATTA+AGG 0.253233 4_3:+7488732 None:intergenic
GCAAGTCTTGTAGGAGATAT+TGG 0.255429 4_3:-7489445 Msa0627400:CDS
TCATTACTCTTTCTCTCTCT+TGG 0.271913 4_3:-7490587 Msa0627400:five_prime_UTR
GAATGGTCTCACTTCATCTT+GGG 0.274434 4_3:-7488832 Msa0627400:CDS
GATATTTCTGCAAGTCTTGT+AGG 0.294030 4_3:-7489454 Msa0627400:CDS
GGAATGGTCTCACTTCATCT+TGG 0.324184 4_3:-7488833 Msa0627400:CDS
ATTGTTGTAGTAACAAAATT+TGG 0.325870 4_3:+7489496 None:intergenic
TTTCCATGGCAGTTCAATAA+TGG 0.330980 4_3:-7488900 Msa0627400:CDS
ACACCATACCTTAGTTTGAT+AGG 0.336527 4_3:-7488600 Msa0627400:three_prime_UTR
GCTTCTGGTTGAGGAGGTTT+CGG 0.343565 4_3:+7489551 None:intergenic
TGCGGCTGCAATTACGGTTA+TGG 0.348385 4_3:-7488643 Msa0627400:three_prime_UTR
GGAAACAAGTGAGTGGATTT+GGG 0.349121 4_3:+7489312 None:intergenic
CATTACTCTTTCTCTCTCTT+GGG 0.353198 4_3:-7490586 Msa0627400:five_prime_UTR
AACAAGAAATGTGTAATGTT+AGG 0.357073 4_3:-7488953 Msa0627400:CDS
ACGAGACGGTGTCTACATTA+GGG 0.358019 4_3:+7488788 None:intergenic
ATGGCTGAAATGGATCATTT+AGG 0.361202 4_3:-7488867 Msa0627400:CDS
TTATATTGCGGCTGCAATTA+CGG 0.361215 4_3:-7488649 Msa0627400:three_prime_UTR
TGGACTGCAATTTAGAACTA+TGG 0.362313 4_3:-7488623 Msa0627400:three_prime_UTR
TTGATTAAGAAGTGTTTGTA+TGG 0.363457 4_3:-7490370 Msa0627400:exon
AGACACAAATATGGCTGAAA+TGG 0.367887 4_3:-7488877 Msa0627400:CDS
CACGAGACGGTGTCTACATT+AGG 0.377042 4_3:+7488787 None:intergenic
CAATAATGGAGACACAAATA+TGG 0.378026 4_3:-7488886 Msa0627400:CDS
GGATTCTTCGAAGCACTTAT+GGG 0.384728 4_3:-7489122 Msa0627400:CDS
CAAGACTTGCAGAAATATCT+TGG 0.387546 4_3:+7489458 None:intergenic
TAGGGAACAAAATGAAAATA+GGG 0.390383 4_3:-7488934 Msa0627400:CDS
AGGTAAGTAATGAAAATCTA+AGG 0.411275 4_3:+7490536 None:intergenic
AGGAATGTTCCTGTTGGTGG+GGG 0.412807 4_3:-7489404 Msa0627400:CDS
TTCTTCTAGTGGACAACAAC+AGG 0.413714 4_3:-7490340 Msa0627400:intron
TGTGAGATCATTGGAATCAT+AGG 0.425382 4_3:+7489280 None:intergenic
GGATTTGGGTTGGTTTGAAA+TGG 0.429582 4_3:+7489326 None:intergenic
GTTGATAATGGCAATGCTAA+TGG 0.432043 4_3:-7489059 Msa0627400:CDS
TACCACATGAGGTGTTGGTT+TGG 0.441239 4_3:+7489186 None:intergenic
AGCATTAGCTAGGCTTCAAA+AGG 0.442460 4_3:-7489255 Msa0627400:CDS
GCTAACCAAGTCAATGAAGT+TGG 0.443836 4_3:-7488398 Msa0627400:three_prime_UTR
GTTTGAGGAGAGAAAAGAAA+AGG 0.447592 4_3:+7490468 None:intergenic
ACAAGAAATGTGTAATGTTA+GGG 0.450520 4_3:-7488952 Msa0627400:CDS
GAAGAATCCATGGTTGTTTG+AGG 0.461029 4_3:+7489136 None:intergenic
ATGCTCATTTCATGATCATA+AGG 0.463078 4_3:+7489011 None:intergenic
TGTGGTATTCTTAACAATCA+TGG 0.480447 4_3:-7489170 Msa0627400:CDS
AAGAAGTGTTTGTATGGGGA+TGG 0.488483 4_3:-7490364 Msa0627400:exon
ATCCATGGTTGTTTGAGGAA+TGG 0.489166 4_3:+7489141 None:intergenic
AGGCTTCAAAAGGGTCAACT+TGG 0.489311 4_3:-7489245 Msa0627400:CDS
ACAAGTGAGTGGATTTGGGT+TGG 0.491105 4_3:+7489316 None:intergenic
CACCATACCTTAGTTTGATA+GGG 0.494586 4_3:-7488599 Msa0627400:three_prime_UTR
CCGCAATATAAAGATTTAAG+AGG 0.494980 4_3:+7488661 None:intergenic
TAAGGAATGTTCCTGTTGGT+GGG 0.496140 4_3:-7489406 Msa0627400:CDS
ATCACTTCCCTATCAAACTA+AGG 0.497359 4_3:+7488592 None:intergenic
AATGGTCTCACTTCATCTTG+GGG 0.497543 4_3:-7488831 Msa0627400:CDS
TGTAGGAGATATTGGACTAA+AGG 0.499003 4_3:-7489437 Msa0627400:CDS
GTGTTGTTTGAGTCACATCT+TGG 0.500769 4_3:+7489518 None:intergenic
TGAATAAGGAAATGAAAGAA+AGG 0.501058 4_3:+7490442 None:intergenic
ATGGATCATTTAGGAAGAGC+TGG 0.502060 4_3:-7488858 Msa0627400:CDS
TAATGCTAGTGTGAGATCAT+TGG 0.503293 4_3:+7489271 None:intergenic
TTGGAATCATAGGACATTGA+AGG 0.508739 4_3:+7489290 None:intergenic
TTAGGAAGAGCTGGTTGGAA+TGG 0.509850 4_3:-7488849 Msa0627400:CDS
TTTGACAATTTAAGGTGCAA+AGG 0.511000 4_3:+7488485 None:intergenic
CCTCTTAAATCTTTATATTG+CGG 0.512201 4_3:-7488661 Msa0627400:three_prime_UTR
CTAAGGAATGTTCCTGTTGG+TGG 0.517333 4_3:-7489407 Msa0627400:CDS
TGATTAAGAAGTGTTTGTAT+GGG 0.520497 4_3:-7490369 Msa0627400:exon
AAGAATACCACATGAGGTGT+TGG 0.521494 4_3:+7489181 None:intergenic
TCTCTCCAACTTCATTGACT+TGG 0.524005 4_3:+7488393 None:intergenic
ATGAAAGAAAGGAAAGTTTG+AGG 0.525614 4_3:+7490453 None:intergenic
TTCCCTATCAAACTAAGGTA+TGG 0.534249 4_3:+7488597 None:intergenic
GACTAATGCAGTTGCAATTG+CGG 0.539445 4_3:-7488704 Msa0627400:three_prime_UTR
AGAAAAGAAAAGGATAGAGA+TGG 0.543014 4_3:+7490478 None:intergenic
TGCAGAATCTTTACTACATG+GGG 0.546230 4_3:-7489085 Msa0627400:CDS
ATGGGGATGGATTCTTCTAG+TGG 0.553754 4_3:-7490351 Msa0627400:CDS
TTTAGAGCTTCTGGTTGAGG+AGG 0.557206 4_3:+7489545 None:intergenic
AAGGAATGTTCCTGTTGGTG+GGG 0.558824 4_3:-7489405 Msa0627400:CDS
GGACTAAAGGTGGTACACTA+AGG 0.568077 4_3:-7489424 Msa0627400:CDS
AATGCTAATGGCAATGGTAA+TGG 0.568080 4_3:-7489047 Msa0627400:CDS
ATCATTTAGGAAGAGCTGGT+TGG 0.573027 4_3:-7488854 Msa0627400:CDS
CGAGACGGTGTCTACATTAG+GGG 0.579103 4_3:+7488789 None:intergenic
TGTGCAGAATCTTTACTACA+TGG 0.579242 4_3:-7489087 Msa0627400:CDS
GCAAATGTCTAACCAGTCGT+TGG 0.579660 4_3:-7489615 Msa0627400:CDS
TGGAATCATAGGACATTGAA+GGG 0.583945 4_3:+7489291 None:intergenic
GGAATGTTCCTGTTGGTGGG+GGG 0.588003 4_3:-7489403 Msa0627400:CDS
ATCTCACACTAGCATTAGCT+AGG 0.588061 4_3:-7489265 Msa0627400:CDS
GTGCAGAATCTTTACTACAT+GGG 0.589427 4_3:-7489086 Msa0627400:CDS
AGTTGCAATTGCGGTTGTGA+TGG 0.595211 4_3:-7488695 Msa0627400:three_prime_UTR
CATCATCAGCTTCATCAAAG+AGG 0.595811 4_3:-7489361 Msa0627400:CDS
TTAACATGCTCTCCAACGAC+TGG 0.598952 4_3:+7489603 None:intergenic
AACCAAACCAACACCTCATG+TGG 0.607094 4_3:-7489188 Msa0627400:CDS
AACCATTCCTCAAACAACCA+TGG 0.607175 4_3:-7489143 Msa0627400:CDS
TAAGTGCTTCGAAGAATCCA+TGG 0.607290 4_3:+7489126 None:intergenic
ATGGTCTCACTTCATCTTGG+GGG 0.616298 4_3:-7488830 Msa0627400:CDS
AATGGCAATGCTAATGGCAA+TGG 0.626445 4_3:-7489053 Msa0627400:CDS
TCTCCATTATTGAACTGCCA+TGG 0.629912 4_3:+7488897 None:intergenic
GCATTAGCTAGGCTTCAAAA+GGG 0.630153 4_3:-7489254 Msa0627400:CDS
GTCGTACAAGATGATGGATG+AGG 0.632055 4_3:+7490625 None:intergenic
GAGACGGTGTCTACATTAGG+GGG 0.640287 4_3:+7488790 None:intergenic
ATTGTTAAGAATACCACATG+AGG 0.643870 4_3:+7489175 None:intergenic
AGGAGATATTGGACTAAAGG+TGG 0.646558 4_3:-7489434 Msa0627400:CDS
GATTAAGAAGTGTTTGTATG+GGG 0.649738 4_3:-7490368 Msa0627400:exon
ACACTAAGGAATGTTCCTGT+TGG 0.660187 4_3:-7489410 Msa0627400:CDS
ATTGAAGGGAAACAAGTGAG+TGG 0.662440 4_3:+7489305 None:intergenic
TGATGATGCAAAGTGAAGTG+AGG 0.684560 4_3:+7490516 None:intergenic
TGAACCTTAATAGTGCGACA+AGG 0.723900 4_3:-7488736 Msa0627400:three_prime_UTR
TGATATTTAGAATCACGAGA+CGG 0.729031 4_3:+7488774 None:intergenic
GCAGAATCTTTACTACATGG+GGG 0.765910 4_3:-7489084 Msa0627400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTGAAAATTTATTAA+TGG - chr4_3:7489118-7489137 Msa0627400:CDS 10.0%
!! AACTAATAAAAATAAAATAG+AGG + chr4_3:7490499-7490518 None:intergenic 10.0%
!! AAAAACTGAAAATTTATTAA+TGG - chr4_3:7489118-7489137 Msa0627400:CDS 10.0%
!! AACTAATAAAAATAAAATAG+AGG + chr4_3:7490499-7490518 None:intergenic 10.0%
!!! TTTTTGTGTATATATGAATA+AGG + chr4_3:7488613-7488632 None:intergenic 15.0%
!! AAAAAATTCAGGAAAATAAT+AGG + chr4_3:7488864-7488883 None:intergenic 15.0%
!! TAACATTATGTTTGAATTAA+CGG - chr4_3:7489188-7489207 Msa0627400:CDS 15.0%
!!! TTTTTGTGTATATATGAATA+AGG + chr4_3:7488613-7488632 None:intergenic 15.0%
!! AAAAAATTCAGGAAAATAAT+AGG + chr4_3:7488864-7488883 None:intergenic 15.0%
!! TAACATTATGTTTGAATTAA+CGG - chr4_3:7489188-7489207 Msa0627400:CDS 15.0%
!! CAAAGAAGAAAAAAAAATTC+AGG + chr4_3:7488875-7488894 None:intergenic 20.0%
!! TTCCATCAAATATTAATTCT+AGG + chr4_3:7489022-7489041 None:intergenic 20.0%
!!! TTTACTTTATTTGATCTAGA+GGG + chr4_3:7489095-7489114 None:intergenic 20.0%
!!! TTTTACTTTATTTGATCTAG+AGG + chr4_3:7489096-7489115 None:intergenic 20.0%
!! TCACAAAAATTTGTACTATT+TGG - chr4_3:7489361-7489380 Msa0627400:CDS 20.0%
!! ATTGTTGTAGTAACAAAATT+TGG + chr4_3:7489545-7489564 None:intergenic 20.0%
!!! CACAAAATTTTGACAATTTA+AGG + chr4_3:7490564-7490583 None:intergenic 20.0%
!! CAAAGAAGAAAAAAAAATTC+AGG + chr4_3:7488875-7488894 None:intergenic 20.0%
!! TTCCATCAAATATTAATTCT+AGG + chr4_3:7489022-7489041 None:intergenic 20.0%
!!! TTTACTTTATTTGATCTAGA+GGG + chr4_3:7489095-7489114 None:intergenic 20.0%
!!! TTTTACTTTATTTGATCTAG+AGG + chr4_3:7489096-7489115 None:intergenic 20.0%
!! TCACAAAAATTTGTACTATT+TGG - chr4_3:7489361-7489380 Msa0627400:CDS 20.0%
!! ATTGTTGTAGTAACAAAATT+TGG + chr4_3:7489545-7489564 None:intergenic 20.0%
!!! CACAAAATTTTGACAATTTA+AGG + chr4_3:7490564-7490583 None:intergenic 20.0%
! AGGTAAGTAATGAAAATCTA+AGG + chr4_3:7488505-7488524 None:intergenic 25.0%
! TGAATAAGGAAATGAAAGAA+AGG + chr4_3:7488599-7488618 None:intergenic 25.0%
!!! CTAGAGATAAAAAAGTGTTA+TGG + chr4_3:7488636-7488655 None:intergenic 25.0%
!!! TTGATTAAGAAGTGTTTGTA+TGG - chr4_3:7488668-7488687 Msa0627400:three_prime_UTR 25.0%
!!! TGATTAAGAAGTGTTTGTAT+GGG - chr4_3:7488669-7488688 Msa0627400:three_prime_UTR 25.0%
! GTAGTACTAAAAATTCATGA+AGG + chr4_3:7488821-7488840 None:intergenic 25.0%
!!! CATGAATTTTTAGTACTACT+TGG - chr4_3:7488822-7488841 Msa0627400:CDS 25.0%
!!! ACTAATTTTATTTCACCCAA+GGG + chr4_3:7488905-7488924 None:intergenic 25.0%
!!! TACTAATTTTATTTCACCCA+AGG + chr4_3:7488906-7488925 None:intergenic 25.0%
! ATATTTGATGGAATAAAGTC+TGG - chr4_3:7489029-7489048 Msa0627400:CDS 25.0%
! TATTTGATGGAATAAAGTCT+GGG - chr4_3:7489030-7489049 Msa0627400:CDS 25.0%
!! TTACTTTATTTGATCTAGAG+GGG + chr4_3:7489094-7489113 None:intergenic 25.0%
!! TTATTAATGGATGTACATGT+TGG - chr4_3:7489131-7489150 Msa0627400:CDS 25.0%
!! TATTAATGGATGTACATGTT+GGG - chr4_3:7489132-7489151 Msa0627400:CDS 25.0%
! ACACAATACAACAAATTTAG+TGG + chr4_3:7489396-7489415 None:intergenic 25.0%
!! GAACATGATTTTTCCATTTT+AGG - chr4_3:7489826-7489845 Msa0627400:intron 25.0%
! AACAAGAAATGTGTAATGTT+AGG - chr4_3:7490085-7490104 Msa0627400:intron 25.0%
! ACAAGAAATGTGTAATGTTA+GGG - chr4_3:7490086-7490105 Msa0627400:intron 25.0%
! TTAGGGAACAAAATGAAAAT+AGG - chr4_3:7490103-7490122 Msa0627400:intron 25.0%
! TAGGGAACAAAATGAAAATA+GGG - chr4_3:7490104-7490123 Msa0627400:intron 25.0%
!!! AATGAAAATAGGGTTTTGTT+AGG - chr4_3:7490114-7490133 Msa0627400:intron 25.0%
! CCTCTTAAATCTTTATATTG+CGG - chr4_3:7490377-7490396 Msa0627400:five_prime_UTR 25.0%
! AGGTAAGTAATGAAAATCTA+AGG + chr4_3:7488505-7488524 None:intergenic 25.0%
! TGAATAAGGAAATGAAAGAA+AGG + chr4_3:7488599-7488618 None:intergenic 25.0%
!!! CTAGAGATAAAAAAGTGTTA+TGG + chr4_3:7488636-7488655 None:intergenic 25.0%
!!! TTGATTAAGAAGTGTTTGTA+TGG - chr4_3:7488668-7488687 Msa0627400:three_prime_UTR 25.0%
!!! TGATTAAGAAGTGTTTGTAT+GGG - chr4_3:7488669-7488688 Msa0627400:three_prime_UTR 25.0%
! GTAGTACTAAAAATTCATGA+AGG + chr4_3:7488821-7488840 None:intergenic 25.0%
!!! CATGAATTTTTAGTACTACT+TGG - chr4_3:7488822-7488841 Msa0627400:CDS 25.0%
!!! ACTAATTTTATTTCACCCAA+GGG + chr4_3:7488905-7488924 None:intergenic 25.0%
!!! TACTAATTTTATTTCACCCA+AGG + chr4_3:7488906-7488925 None:intergenic 25.0%
! ATATTTGATGGAATAAAGTC+TGG - chr4_3:7489029-7489048 Msa0627400:CDS 25.0%
! TATTTGATGGAATAAAGTCT+GGG - chr4_3:7489030-7489049 Msa0627400:CDS 25.0%
!! TTACTTTATTTGATCTAGAG+GGG + chr4_3:7489094-7489113 None:intergenic 25.0%
!! TTATTAATGGATGTACATGT+TGG - chr4_3:7489131-7489150 Msa0627400:CDS 25.0%
!! TATTAATGGATGTACATGTT+GGG - chr4_3:7489132-7489151 Msa0627400:CDS 25.0%
! ACACAATACAACAAATTTAG+TGG + chr4_3:7489396-7489415 None:intergenic 25.0%
!! GAACATGATTTTTCCATTTT+AGG - chr4_3:7489826-7489845 Msa0627400:intron 25.0%
! AACAAGAAATGTGTAATGTT+AGG - chr4_3:7490085-7490104 Msa0627400:intron 25.0%
! ACAAGAAATGTGTAATGTTA+GGG - chr4_3:7490086-7490105 Msa0627400:intron 25.0%
! TTAGGGAACAAAATGAAAAT+AGG - chr4_3:7490103-7490122 Msa0627400:intron 25.0%
! TAGGGAACAAAATGAAAATA+GGG - chr4_3:7490104-7490123 Msa0627400:intron 25.0%
!!! AATGAAAATAGGGTTTTGTT+AGG - chr4_3:7490114-7490133 Msa0627400:intron 25.0%
! CCTCTTAAATCTTTATATTG+CGG - chr4_3:7490377-7490396 Msa0627400:five_prime_UTR 25.0%
! AATTTTGTCGTACAAGATGA+TGG + chr4_3:7488422-7488441 None:intergenic 30.0%
AGAAAAGAAAAGGATAGAGA+TGG + chr4_3:7488563-7488582 None:intergenic 30.0%
ATGAAAGAAAGGAAAGTTTG+AGG + chr4_3:7488588-7488607 None:intergenic 30.0%
!! GATTAAGAAGTGTTTGTATG+GGG - chr4_3:7488670-7488689 Msa0627400:three_prime_UTR 30.0%
AAATTCATGAAGGACAAAGA+TGG + chr4_3:7488811-7488830 None:intergenic 30.0%
GGCCTAGAATTAATATTTGA+TGG - chr4_3:7489017-7489036 Msa0627400:CDS 30.0%
GAATCAGAAAAGTTACATTG+TGG - chr4_3:7489222-7489241 Msa0627400:CDS 30.0%
ATTGTTAAGAATACCACATG+AGG + chr4_3:7489866-7489885 None:intergenic 30.0%
TGTGGTATTCTTAACAATCA+TGG - chr4_3:7489868-7489887 Msa0627400:intron 30.0%
ATGCTCATTTCATGATCATA+AGG + chr4_3:7490030-7490049 None:intergenic 30.0%
! CAATAATGGAGACACAAATA+TGG - chr4_3:7490152-7490171 Msa0627400:intron 30.0%
! TGATATTTAGAATCACGAGA+CGG + chr4_3:7490267-7490286 None:intergenic 30.0%
CCGCAATATAAAGATTTAAG+AGG + chr4_3:7490380-7490399 None:intergenic 30.0%
! TTTGACAATTTAAGGTGCAA+AGG + chr4_3:7490556-7490575 None:intergenic 30.0%
! TGCTACTAGTGTCTTTTAAT+TGG - chr4_3:7490582-7490601 Msa0627400:five_prime_UTR 30.0%
! AATTTTGTCGTACAAGATGA+TGG + chr4_3:7488422-7488441 None:intergenic 30.0%
AGAAAAGAAAAGGATAGAGA+TGG + chr4_3:7488563-7488582 None:intergenic 30.0%
ATGAAAGAAAGGAAAGTTTG+AGG + chr4_3:7488588-7488607 None:intergenic 30.0%
!! GATTAAGAAGTGTTTGTATG+GGG - chr4_3:7488670-7488689 Msa0627400:three_prime_UTR 30.0%
AAATTCATGAAGGACAAAGA+TGG + chr4_3:7488811-7488830 None:intergenic 30.0%
GGCCTAGAATTAATATTTGA+TGG - chr4_3:7489017-7489036 Msa0627400:CDS 30.0%
GAATCAGAAAAGTTACATTG+TGG - chr4_3:7489222-7489241 Msa0627400:CDS 30.0%
ATTGTTAAGAATACCACATG+AGG + chr4_3:7489866-7489885 None:intergenic 30.0%
TGTGGTATTCTTAACAATCA+TGG - chr4_3:7489868-7489887 Msa0627400:intron 30.0%
ATGCTCATTTCATGATCATA+AGG + chr4_3:7490030-7490049 None:intergenic 30.0%
! CAATAATGGAGACACAAATA+TGG - chr4_3:7490152-7490171 Msa0627400:intron 30.0%
! TGATATTTAGAATCACGAGA+CGG + chr4_3:7490267-7490286 None:intergenic 30.0%
CCGCAATATAAAGATTTAAG+AGG + chr4_3:7490380-7490399 None:intergenic 30.0%
! TTTGACAATTTAAGGTGCAA+AGG + chr4_3:7490556-7490575 None:intergenic 30.0%
! TGCTACTAGTGTCTTTTAAT+TGG - chr4_3:7490582-7490601 Msa0627400:five_prime_UTR 30.0%
TCATTACTCTTTCTCTCTCT+TGG - chr4_3:7488451-7488470 Msa0627400:three_prime_UTR 35.0%
CATTACTCTTTCTCTCTCTT+GGG - chr4_3:7488452-7488471 Msa0627400:three_prime_UTR 35.0%
GTTTGAGGAGAGAAAAGAAA+AGG + chr4_3:7488573-7488592 None:intergenic 35.0%
ACTACTTGGAAGAATGAACA+AGG - chr4_3:7488836-7488855 Msa0627400:CDS 35.0%
TTAGCATCTTCATCTTTGTG+AGG - chr4_3:7489068-7489087 Msa0627400:CDS 35.0%
CAAGACTTGCAGAAATATCT+TGG + chr4_3:7489583-7489602 None:intergenic 35.0%
! GATATTTCTGCAAGTCTTGT+AGG - chr4_3:7489584-7489603 Msa0627400:CDS 35.0%
TGTAGGAGATATTGGACTAA+AGG - chr4_3:7489601-7489620 Msa0627400:CDS 35.0%
TGGAATCATAGGACATTGAA+GGG + chr4_3:7489750-7489769 None:intergenic 35.0%
TTGGAATCATAGGACATTGA+AGG + chr4_3:7489751-7489770 None:intergenic 35.0%
TGTGAGATCATTGGAATCAT+AGG + chr4_3:7489761-7489780 None:intergenic 35.0%
TAATGCTAGTGTGAGATCAT+TGG + chr4_3:7489770-7489789 None:intergenic 35.0%
!! GTTGGTTTGGTTTCCTAAAA+TGG + chr4_3:7489842-7489861 None:intergenic 35.0%
TGTGCAGAATCTTTACTACA+TGG - chr4_3:7489951-7489970 Msa0627400:intron 35.0%
GTGCAGAATCTTTACTACAT+GGG - chr4_3:7489952-7489971 Msa0627400:intron 35.0%
TGCAGAATCTTTACTACATG+GGG - chr4_3:7489953-7489972 Msa0627400:intron 35.0%
!! GTTGATAATGGCAATGCTAA+TGG - chr4_3:7489979-7489998 Msa0627400:intron 35.0%
AATGCTAATGGCAATGGTAA+TGG - chr4_3:7489991-7490010 Msa0627400:intron 35.0%
TTTCCATGGCAGTTCAATAA+TGG - chr4_3:7490138-7490157 Msa0627400:intron 35.0%
AGACACAAATATGGCTGAAA+TGG - chr4_3:7490161-7490180 Msa0627400:intron 35.0%
ATGGCTGAAATGGATCATTT+AGG - chr4_3:7490171-7490190 Msa0627400:intron 35.0%
TTATATTGCGGCTGCAATTA+CGG - chr4_3:7490389-7490408 Msa0627400:five_prime_UTR 35.0%
! TGGACTGCAATTTAGAACTA+TGG - chr4_3:7490415-7490434 Msa0627400:five_prime_UTR 35.0%
! ACACCATACCTTAGTTTGAT+AGG - chr4_3:7490438-7490457 Msa0627400:five_prime_UTR 35.0%
! CACCATACCTTAGTTTGATA+GGG - chr4_3:7490439-7490458 Msa0627400:five_prime_UTR 35.0%
TTCCCTATCAAACTAAGGTA+TGG + chr4_3:7490444-7490463 None:intergenic 35.0%
ATCACTTCCCTATCAAACTA+AGG + chr4_3:7490449-7490468 None:intergenic 35.0%
TCATTACTCTTTCTCTCTCT+TGG - chr4_3:7488451-7488470 Msa0627400:three_prime_UTR 35.0%
CATTACTCTTTCTCTCTCTT+GGG - chr4_3:7488452-7488471 Msa0627400:three_prime_UTR 35.0%
GTTTGAGGAGAGAAAAGAAA+AGG + chr4_3:7488573-7488592 None:intergenic 35.0%
ACTACTTGGAAGAATGAACA+AGG - chr4_3:7488836-7488855 Msa0627400:CDS 35.0%
TTAGCATCTTCATCTTTGTG+AGG - chr4_3:7489068-7489087 Msa0627400:CDS 35.0%
CAAGACTTGCAGAAATATCT+TGG + chr4_3:7489583-7489602 None:intergenic 35.0%
! GATATTTCTGCAAGTCTTGT+AGG - chr4_3:7489584-7489603 Msa0627400:CDS 35.0%
TGTAGGAGATATTGGACTAA+AGG - chr4_3:7489601-7489620 Msa0627400:CDS 35.0%
TGGAATCATAGGACATTGAA+GGG + chr4_3:7489750-7489769 None:intergenic 35.0%
TTGGAATCATAGGACATTGA+AGG + chr4_3:7489751-7489770 None:intergenic 35.0%
TGTGAGATCATTGGAATCAT+AGG + chr4_3:7489761-7489780 None:intergenic 35.0%
TAATGCTAGTGTGAGATCAT+TGG + chr4_3:7489770-7489789 None:intergenic 35.0%
!! GTTGGTTTGGTTTCCTAAAA+TGG + chr4_3:7489842-7489861 None:intergenic 35.0%
TGTGCAGAATCTTTACTACA+TGG - chr4_3:7489951-7489970 Msa0627400:intron 35.0%
GTGCAGAATCTTTACTACAT+GGG - chr4_3:7489952-7489971 Msa0627400:intron 35.0%
TGCAGAATCTTTACTACATG+GGG - chr4_3:7489953-7489972 Msa0627400:intron 35.0%
!! GTTGATAATGGCAATGCTAA+TGG - chr4_3:7489979-7489998 Msa0627400:intron 35.0%
AATGCTAATGGCAATGGTAA+TGG - chr4_3:7489991-7490010 Msa0627400:intron 35.0%
TTTCCATGGCAGTTCAATAA+TGG - chr4_3:7490138-7490157 Msa0627400:intron 35.0%
AGACACAAATATGGCTGAAA+TGG - chr4_3:7490161-7490180 Msa0627400:intron 35.0%
ATGGCTGAAATGGATCATTT+AGG - chr4_3:7490171-7490190 Msa0627400:intron 35.0%
TTATATTGCGGCTGCAATTA+CGG - chr4_3:7490389-7490408 Msa0627400:five_prime_UTR 35.0%
! TGGACTGCAATTTAGAACTA+TGG - chr4_3:7490415-7490434 Msa0627400:five_prime_UTR 35.0%
! ACACCATACCTTAGTTTGAT+AGG - chr4_3:7490438-7490457 Msa0627400:five_prime_UTR 35.0%
! CACCATACCTTAGTTTGATA+GGG - chr4_3:7490439-7490458 Msa0627400:five_prime_UTR 35.0%
TTCCCTATCAAACTAAGGTA+TGG + chr4_3:7490444-7490463 None:intergenic 35.0%
ATCACTTCCCTATCAAACTA+AGG + chr4_3:7490449-7490468 None:intergenic 35.0%
! TGATGATGCAAAGTGAAGTG+AGG + chr4_3:7488525-7488544 None:intergenic 40.0%
!! AAGAAGTGTTTGTATGGGGA+TGG - chr4_3:7488674-7488693 Msa0627400:three_prime_UTR 40.0%
! TTCTTCTAGTGGACAACAAC+AGG - chr4_3:7488698-7488717 Msa0627400:three_prime_UTR 40.0%
TCATGAAGGACAAAGATGGA+AGG + chr4_3:7488807-7488826 None:intergenic 40.0%
! TCTTCTTTGAAGAACACCCT+TGG - chr4_3:7488886-7488905 Msa0627400:CDS 40.0%
! CTTCTTTGAAGAACACCCTT+GGG - chr4_3:7488887-7488906 Msa0627400:CDS 40.0%
GCTGTATACATGTGGTTCAT+AGG + chr4_3:7488994-7489013 None:intergenic 40.0%
ATGAACCACATGTATACAGC+TGG - chr4_3:7488994-7489013 Msa0627400:CDS 40.0%
TGAACCACATGTATACAGCT+GGG - chr4_3:7488995-7489014 Msa0627400:CDS 40.0%
!!! CATTTTAGAGCTTCTGGTTG+AGG + chr4_3:7489499-7489518 None:intergenic 40.0%
!!! CTTGGACATTTTAGAGCTTC+TGG + chr4_3:7489505-7489524 None:intergenic 40.0%
!! GTGTTGTTTGAGTCACATCT+TGG + chr4_3:7489523-7489542 None:intergenic 40.0%
! GCAAGTCTTGTAGGAGATAT+TGG - chr4_3:7489593-7489612 Msa0627400:CDS 40.0%
AGGAGATATTGGACTAAAGG+TGG - chr4_3:7489604-7489623 Msa0627400:CDS 40.0%
ACACTAAGGAATGTTCCTGT+TGG - chr4_3:7489628-7489647 Msa0627400:intron 40.0%
TAAGGAATGTTCCTGTTGGT+GGG - chr4_3:7489632-7489651 Msa0627400:intron 40.0%
CATCATCAGCTTCATCAAAG+AGG - chr4_3:7489677-7489696 Msa0627400:intron 40.0%
!! GGATTTGGGTTGGTTTGAAA+TGG + chr4_3:7489715-7489734 None:intergenic 40.0%
! GGAAACAAGTGAGTGGATTT+GGG + chr4_3:7489729-7489748 None:intergenic 40.0%
ATTGAAGGGAAACAAGTGAG+TGG + chr4_3:7489736-7489755 None:intergenic 40.0%
ATCTCACACTAGCATTAGCT+AGG - chr4_3:7489773-7489792 Msa0627400:intron 40.0%
AGCATTAGCTAGGCTTCAAA+AGG - chr4_3:7489783-7489802 Msa0627400:intron 40.0%
GCATTAGCTAGGCTTCAAAA+GGG - chr4_3:7489784-7489803 Msa0627400:intron 40.0%
AAGAATACCACATGAGGTGT+TGG + chr4_3:7489860-7489879 None:intergenic 40.0%
AACCATTCCTCAAACAACCA+TGG - chr4_3:7489895-7489914 Msa0627400:intron 40.0%
ATCCATGGTTGTTTGAGGAA+TGG + chr4_3:7489900-7489919 None:intergenic 40.0%
GAAGAATCCATGGTTGTTTG+AGG + chr4_3:7489905-7489924 None:intergenic 40.0%
TAAGTGCTTCGAAGAATCCA+TGG + chr4_3:7489915-7489934 None:intergenic 40.0%
! TGGATTCTTCGAAGCACTTA+TGG - chr4_3:7489915-7489934 Msa0627400:intron 40.0%
! GGATTCTTCGAAGCACTTAT+GGG - chr4_3:7489916-7489935 Msa0627400:intron 40.0%
GCAGAATCTTTACTACATGG+GGG - chr4_3:7489954-7489973 Msa0627400:intron 40.0%
AATGGCAATGCTAATGGCAA+TGG - chr4_3:7489985-7490004 Msa0627400:intron 40.0%
!!! GGGTTTTGTTAGGTTTTCCA+TGG - chr4_3:7490124-7490143 Msa0627400:intron 40.0%
TCTCCATTATTGAACTGCCA+TGG + chr4_3:7490144-7490163 None:intergenic 40.0%
ATGGATCATTTAGGAAGAGC+TGG - chr4_3:7490180-7490199 Msa0627400:intron 40.0%
ATCATTTAGGAAGAGCTGGT+TGG - chr4_3:7490184-7490203 Msa0627400:intron 40.0%
GAATGGTCTCACTTCATCTT+GGG - chr4_3:7490206-7490225 Msa0627400:intron 40.0%
AATGGTCTCACTTCATCTTG+GGG - chr4_3:7490207-7490226 Msa0627400:intron 40.0%
TGAACCTTAATAGTGCGACA+AGG - chr4_3:7490302-7490321 Msa0627400:intron 40.0%
ATTGCCTTGTCGCACTATTA+AGG + chr4_3:7490309-7490328 None:intergenic 40.0%
GACTAATGCAGTTGCAATTG+CGG - chr4_3:7490334-7490353 Msa0627400:intron 40.0%
GCTAACCAAGTCAATGAAGT+TGG - chr4_3:7490640-7490659 Msa0627400:five_prime_UTR 40.0%
! TCTCTCCAACTTCATTGACT+TGG + chr4_3:7490648-7490667 None:intergenic 40.0%
! TGATGATGCAAAGTGAAGTG+AGG + chr4_3:7488525-7488544 None:intergenic 40.0%
!! AAGAAGTGTTTGTATGGGGA+TGG - chr4_3:7488674-7488693 Msa0627400:three_prime_UTR 40.0%
! TTCTTCTAGTGGACAACAAC+AGG - chr4_3:7488698-7488717 Msa0627400:three_prime_UTR 40.0%
TCATGAAGGACAAAGATGGA+AGG + chr4_3:7488807-7488826 None:intergenic 40.0%
! TCTTCTTTGAAGAACACCCT+TGG - chr4_3:7488886-7488905 Msa0627400:CDS 40.0%
! CTTCTTTGAAGAACACCCTT+GGG - chr4_3:7488887-7488906 Msa0627400:CDS 40.0%
GCTGTATACATGTGGTTCAT+AGG + chr4_3:7488994-7489013 None:intergenic 40.0%
ATGAACCACATGTATACAGC+TGG - chr4_3:7488994-7489013 Msa0627400:CDS 40.0%
TGAACCACATGTATACAGCT+GGG - chr4_3:7488995-7489014 Msa0627400:CDS 40.0%
!!! CATTTTAGAGCTTCTGGTTG+AGG + chr4_3:7489499-7489518 None:intergenic 40.0%
!!! CTTGGACATTTTAGAGCTTC+TGG + chr4_3:7489505-7489524 None:intergenic 40.0%
!! GTGTTGTTTGAGTCACATCT+TGG + chr4_3:7489523-7489542 None:intergenic 40.0%
! GCAAGTCTTGTAGGAGATAT+TGG - chr4_3:7489593-7489612 Msa0627400:CDS 40.0%
AGGAGATATTGGACTAAAGG+TGG - chr4_3:7489604-7489623 Msa0627400:CDS 40.0%
ACACTAAGGAATGTTCCTGT+TGG - chr4_3:7489628-7489647 Msa0627400:intron 40.0%
TAAGGAATGTTCCTGTTGGT+GGG - chr4_3:7489632-7489651 Msa0627400:intron 40.0%
CATCATCAGCTTCATCAAAG+AGG - chr4_3:7489677-7489696 Msa0627400:intron 40.0%
!! GGATTTGGGTTGGTTTGAAA+TGG + chr4_3:7489715-7489734 None:intergenic 40.0%
! GGAAACAAGTGAGTGGATTT+GGG + chr4_3:7489729-7489748 None:intergenic 40.0%
ATTGAAGGGAAACAAGTGAG+TGG + chr4_3:7489736-7489755 None:intergenic 40.0%
ATCTCACACTAGCATTAGCT+AGG - chr4_3:7489773-7489792 Msa0627400:intron 40.0%
AGCATTAGCTAGGCTTCAAA+AGG - chr4_3:7489783-7489802 Msa0627400:intron 40.0%
GCATTAGCTAGGCTTCAAAA+GGG - chr4_3:7489784-7489803 Msa0627400:intron 40.0%
AAGAATACCACATGAGGTGT+TGG + chr4_3:7489860-7489879 None:intergenic 40.0%
AACCATTCCTCAAACAACCA+TGG - chr4_3:7489895-7489914 Msa0627400:intron 40.0%
ATCCATGGTTGTTTGAGGAA+TGG + chr4_3:7489900-7489919 None:intergenic 40.0%
GAAGAATCCATGGTTGTTTG+AGG + chr4_3:7489905-7489924 None:intergenic 40.0%
TAAGTGCTTCGAAGAATCCA+TGG + chr4_3:7489915-7489934 None:intergenic 40.0%
! TGGATTCTTCGAAGCACTTA+TGG - chr4_3:7489915-7489934 Msa0627400:intron 40.0%
! GGATTCTTCGAAGCACTTAT+GGG - chr4_3:7489916-7489935 Msa0627400:intron 40.0%
GCAGAATCTTTACTACATGG+GGG - chr4_3:7489954-7489973 Msa0627400:intron 40.0%
AATGGCAATGCTAATGGCAA+TGG - chr4_3:7489985-7490004 Msa0627400:intron 40.0%
!!! GGGTTTTGTTAGGTTTTCCA+TGG - chr4_3:7490124-7490143 Msa0627400:intron 40.0%
TCTCCATTATTGAACTGCCA+TGG + chr4_3:7490144-7490163 None:intergenic 40.0%
ATGGATCATTTAGGAAGAGC+TGG - chr4_3:7490180-7490199 Msa0627400:intron 40.0%
ATCATTTAGGAAGAGCTGGT+TGG - chr4_3:7490184-7490203 Msa0627400:intron 40.0%
GAATGGTCTCACTTCATCTT+GGG - chr4_3:7490206-7490225 Msa0627400:intron 40.0%
AATGGTCTCACTTCATCTTG+GGG - chr4_3:7490207-7490226 Msa0627400:intron 40.0%
TGAACCTTAATAGTGCGACA+AGG - chr4_3:7490302-7490321 Msa0627400:intron 40.0%
ATTGCCTTGTCGCACTATTA+AGG + chr4_3:7490309-7490328 None:intergenic 40.0%
GACTAATGCAGTTGCAATTG+CGG - chr4_3:7490334-7490353 Msa0627400:intron 40.0%
GCTAACCAAGTCAATGAAGT+TGG - chr4_3:7490640-7490659 Msa0627400:five_prime_UTR 40.0%
! TCTCTCCAACTTCATTGACT+TGG + chr4_3:7490648-7490667 None:intergenic 40.0%
!! GTCGTACAAGATGATGGATG+AGG + chr4_3:7488416-7488435 None:intergenic 45.0%
! ATGGGGATGGATTCTTCTAG+TGG - chr4_3:7488687-7488706 Msa0627400:three_prime_UTR 45.0%
GAACCACATGTATACAGCTG+GGG - chr4_3:7488996-7489015 Msa0627400:CDS 45.0%
GCAAATGTCTAACCAGTCGT+TGG - chr4_3:7489423-7489442 Msa0627400:CDS 45.0%
TTAACATGCTCTCCAACGAC+TGG + chr4_3:7489438-7489457 None:intergenic 45.0%
! TTTAGAGCTTCTGGTTGAGG+AGG + chr4_3:7489496-7489515 None:intergenic 45.0%
GGACTAAAGGTGGTACACTA+AGG - chr4_3:7489614-7489633 Msa0627400:CDS 45.0%
CTAAGGAATGTTCCTGTTGG+TGG - chr4_3:7489631-7489650 Msa0627400:intron 45.0%
AAGGAATGTTCCTGTTGGTG+GGG - chr4_3:7489633-7489652 Msa0627400:intron 45.0%
! ACAAGTGAGTGGATTTGGGT+TGG + chr4_3:7489725-7489744 None:intergenic 45.0%
! GGGAAACAAGTGAGTGGATT+TGG + chr4_3:7489730-7489749 None:intergenic 45.0%
AGGCTTCAAAAGGGTCAACT+TGG - chr4_3:7489793-7489812 Msa0627400:intron 45.0%
AACCAAACCAACACCTCATG+TGG - chr4_3:7489850-7489869 Msa0627400:intron 45.0%
!! TACCACATGAGGTGTTGGTT+TGG + chr4_3:7489855-7489874 None:intergenic 45.0%
GAATCTTTACTACATGGGGG+AGG - chr4_3:7489957-7489976 Msa0627400:intron 45.0%
!! TACATGGGGGAGGTTGATAA+TGG - chr4_3:7489967-7489986 Msa0627400:intron 45.0%
TTAGGAAGAGCTGGTTGGAA+TGG - chr4_3:7490189-7490208 Msa0627400:intron 45.0%
GGAATGGTCTCACTTCATCT+TGG - chr4_3:7490205-7490224 Msa0627400:intron 45.0%
ATGGTCTCACTTCATCTTGG+GGG - chr4_3:7490208-7490227 Msa0627400:intron 45.0%
ACATTAGGGGGCTATTGAGA+AGG + chr4_3:7490239-7490258 None:intergenic 45.0%
ACGAGACGGTGTCTACATTA+GGG + chr4_3:7490253-7490272 None:intergenic 45.0%
AGTTGCAATTGCGGTTGTGA+TGG - chr4_3:7490343-7490362 Msa0627400:CDS 45.0%
!! GTCGTACAAGATGATGGATG+AGG + chr4_3:7488416-7488435 None:intergenic 45.0%
! ATGGGGATGGATTCTTCTAG+TGG - chr4_3:7488687-7488706 Msa0627400:three_prime_UTR 45.0%
GAACCACATGTATACAGCTG+GGG - chr4_3:7488996-7489015 Msa0627400:CDS 45.0%
GCAAATGTCTAACCAGTCGT+TGG - chr4_3:7489423-7489442 Msa0627400:CDS 45.0%
TTAACATGCTCTCCAACGAC+TGG + chr4_3:7489438-7489457 None:intergenic 45.0%
! TTTAGAGCTTCTGGTTGAGG+AGG + chr4_3:7489496-7489515 None:intergenic 45.0%
GGACTAAAGGTGGTACACTA+AGG - chr4_3:7489614-7489633 Msa0627400:CDS 45.0%
CTAAGGAATGTTCCTGTTGG+TGG - chr4_3:7489631-7489650 Msa0627400:intron 45.0%
AAGGAATGTTCCTGTTGGTG+GGG - chr4_3:7489633-7489652 Msa0627400:intron 45.0%
! ACAAGTGAGTGGATTTGGGT+TGG + chr4_3:7489725-7489744 None:intergenic 45.0%
! GGGAAACAAGTGAGTGGATT+TGG + chr4_3:7489730-7489749 None:intergenic 45.0%
AGGCTTCAAAAGGGTCAACT+TGG - chr4_3:7489793-7489812 Msa0627400:intron 45.0%
AACCAAACCAACACCTCATG+TGG - chr4_3:7489850-7489869 Msa0627400:intron 45.0%
!! TACCACATGAGGTGTTGGTT+TGG + chr4_3:7489855-7489874 None:intergenic 45.0%
GAATCTTTACTACATGGGGG+AGG - chr4_3:7489957-7489976 Msa0627400:intron 45.0%
!! TACATGGGGGAGGTTGATAA+TGG - chr4_3:7489967-7489986 Msa0627400:intron 45.0%
TTAGGAAGAGCTGGTTGGAA+TGG - chr4_3:7490189-7490208 Msa0627400:intron 45.0%
GGAATGGTCTCACTTCATCT+TGG - chr4_3:7490205-7490224 Msa0627400:intron 45.0%
ATGGTCTCACTTCATCTTGG+GGG - chr4_3:7490208-7490227 Msa0627400:intron 45.0%
ACATTAGGGGGCTATTGAGA+AGG + chr4_3:7490239-7490258 None:intergenic 45.0%
ACGAGACGGTGTCTACATTA+GGG + chr4_3:7490253-7490272 None:intergenic 45.0%
AGTTGCAATTGCGGTTGTGA+TGG - chr4_3:7490343-7490362 Msa0627400:CDS 45.0%
! GCTTCTGGTTGAGGAGGTTT+CGG + chr4_3:7489490-7489509 None:intergenic 50.0%
! AGGAATGTTCCTGTTGGTGG+GGG - chr4_3:7489634-7489653 Msa0627400:intron 50.0%
GAGACGGTGTCTACATTAGG+GGG + chr4_3:7490251-7490270 None:intergenic 50.0%
CGAGACGGTGTCTACATTAG+GGG + chr4_3:7490252-7490271 None:intergenic 50.0%
CACGAGACGGTGTCTACATT+AGG + chr4_3:7490254-7490273 None:intergenic 50.0%
TGCGGCTGCAATTACGGTTA+TGG - chr4_3:7490395-7490414 Msa0627400:five_prime_UTR 50.0%
! GCTTCTGGTTGAGGAGGTTT+CGG + chr4_3:7489490-7489509 None:intergenic 50.0%
! AGGAATGTTCCTGTTGGTGG+GGG - chr4_3:7489634-7489653 Msa0627400:intron 50.0%
GAGACGGTGTCTACATTAGG+GGG + chr4_3:7490251-7490270 None:intergenic 50.0%
CGAGACGGTGTCTACATTAG+GGG + chr4_3:7490252-7490271 None:intergenic 50.0%
CACGAGACGGTGTCTACATT+AGG + chr4_3:7490254-7490273 None:intergenic 50.0%
TGCGGCTGCAATTACGGTTA+TGG - chr4_3:7490395-7490414 Msa0627400:five_prime_UTR 50.0%
AGGCCCCAGCTGTATACATG+TGG + chr4_3:7489002-7489021 None:intergenic 55.0%
! GGAATGTTCCTGTTGGTGGG+GGG - chr4_3:7489635-7489654 Msa0627400:intron 55.0%
TTTCTACACCCCCCACCAAC+AGG + chr4_3:7489646-7489665 None:intergenic 55.0%
CTCACTTCATCTTGGGGGCA+TGG - chr4_3:7490213-7490232 Msa0627400:intron 55.0%
AGGCCCCAGCTGTATACATG+TGG + chr4_3:7489002-7489021 None:intergenic 55.0%
! GGAATGTTCCTGTTGGTGGG+GGG - chr4_3:7489635-7489654 Msa0627400:intron 55.0%
TTTCTACACCCCCCACCAAC+AGG + chr4_3:7489646-7489665 None:intergenic 55.0%
CTCACTTCATCTTGGGGGCA+TGG - chr4_3:7490213-7490232 Msa0627400:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 7488388 7490672 7488388 ID=Msa0627400;Name=Msa0627400
chr4_3 mRNA 7488388 7490672 7488388 ID=Msa0627400-mRNA-1;Parent=Msa0627400;Name=Msa0627400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=299|1|1|1|1|1|2|412|289
chr4_3 exon 7488388 7489636 7488388 ID=Msa0627400-mRNA-1:exon:2207;Parent=Msa0627400-mRNA-1
chr4_3 exon 7490341 7490672 7490341 ID=Msa0627400-mRNA-1:exon:2206;Parent=Msa0627400-mRNA-1
chr4_3 five_prime_UTR 7490374 7490672 7490374 ID=Msa0627400-mRNA-1:five_prime_utr;Parent=Msa0627400-mRNA-1
chr4_3 CDS 7490341 7490373 7490341 ID=Msa0627400-mRNA-1:cds;Parent=Msa0627400-mRNA-1
chr4_3 CDS 7488800 7489636 7488800 ID=Msa0627400-mRNA-1:cds;Parent=Msa0627400-mRNA-1
chr4_3 three_prime_UTR 7488388 7488799 7488388 ID=Msa0627400-mRNA-1:three_prime_utr;Parent=Msa0627400-mRNA-1
Gene Sequence

>Msa0627400

ATGGGGATGGATTCTTCTAGTGGACAACAACAGCAAATGTCTAACCAGTCGTTGGAGAGCATGTTAACATGTTCAAAAGCAGAACAAGACAAAAAGCCGAAACCTCCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAACAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACTAAAGGTGGTACACTAAGGAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCAGCTTCATCAAAGAGGTCTCAAGATCAACCATTTCAAACCAACCCAAATCCACTCACTTGTTTCCCTTCAATGTCCTATGATTCCAATGATCTCACACTAGCATTAGCTAGGCTTCAAAAGGGTCAACTTGGATTTGATCATGAACATGATTTTTCCATTTTAGGAAACCAAACCAACACCTCATGTGGTATTCTTAACAATCATGGTATGAACCATTCCTCAAACAACCATGGATTCTTCGAAGCACTTATGGGATCTCAAAACAATGTGCAGAATCTTTACTACATGGGGGAGGTTGATAATGGCAATGCTAATGGCAATGGTAATGGTGAGATGATGTTACCTTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTTACAGTTACTACTATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATGGAGACACAAATATGGCTGAAATGGATCATTTAGGAAGAGCTGGTTGGAATGGTCTCACTTCATCTTGGGGGCATGGCCTTCTCAATAGCCCCCTAATGTAG
Protein sequence

>Msa0627400

MGMDSSSGQQQQMSNQSLESMLTCSKAEQDKKPKPPQPEALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSASSKRSQDQPFQTNPNPLTCFPSMSYDSNDLTLALARLQKGQLGFDHEHDFSILGNQTNTSCGILNNHGMNHSSNNHGFFEALMGSQNNVQNLYYMGEVDNGNANGNGNGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNGDTNMAEMDHLGRAGWNGLTSSWGHGLLNSPLM*