AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603010 MtrunA17_Chr3g0141461 83.521 267 16 1 1 239 342 608 4.16e-119 356
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603010 AT1G75150.2 38.211 246 98 6 1 200 367 604 3.09e-20 90.1
Msa0603010 AT1G75150.3 38.211 246 98 6 1 200 367 604 3.24e-20 89.7
Msa0603010 AT1G75150.1 38.211 246 98 6 1 200 367 604 3.27e-20 89.7

Find 226 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACCGCAATTAAGTTTC+TGG 0.119108 4_2:+47196357 None:intergenic
ATTCCGATTTAAGTCCTTTA+AGG 0.140672 4_2:-47199219 Msa0603010:intron
GTCCGATCATCATATATATT+TGG 0.169505 4_2:-47195376 Msa0603010:three_prime_UTR
GGGTTTGCTCAACTTTATTT+TGG 0.176166 4_2:-47198269 Msa0603010:five_prime_UTR
TGTTTAGAGTTGGTGGTTTC+TGG 0.183311 4_2:-47200115 Msa0603010:five_prime_UTR
CTGTGTATTTCTTTGGAATT+TGG 0.196893 4_2:+47194923 None:intergenic
TGTCTCAGTTTGCATATAAT+TGG 0.205546 4_2:+47194596 None:intergenic
TTTCTCAATCAATTGAATTA+TGG 0.220514 4_2:-47194450 Msa0603010:three_prime_UTR
ATAGTAAAGTCGACGTTATT+TGG 0.223314 4_2:-47199045 Msa0603010:five_prime_UTR
ATTTGTTCTGTGTATTTCTT+TGG 0.223685 4_2:+47194916 None:intergenic
AATTGAAATCCATTGGTTAT+AGG 0.240760 4_2:-47197631 Msa0603010:five_prime_UTR
ATTTGGTCGATGCAACATTA+TGG 0.242218 4_2:-47198888 Msa0603010:five_prime_UTR
TCCATCTTGGATCTCCTTAA+AGG 0.242923 4_2:+47199205 None:intergenic
GAACCTCAGTCATCAGTTCT+AGG 0.254865 4_2:-47197549 Msa0603010:five_prime_UTR
CGGTTGTATCTCAGATTATA+AGG 0.256841 4_2:-47194974 Msa0603010:intron
ACCTCTTAGACGTTTCTTAC+AGG 0.271687 4_2:-47200005 Msa0603010:intron
TGGCATCATTCTCATGCTTC+TGG 0.272694 4_2:-47200040 Msa0603010:five_prime_UTR
TAACAAATTTGCTGGGATAA+AGG 0.281126 4_2:+47195608 None:intergenic
ATCCGGTGGTTGAGAGGTTT+AGG 0.288162 4_2:-47198616 Msa0603010:five_prime_UTR
CTTGATTCTGCTCCTGTTGA+TGG 0.294514 4_2:-47197054 Msa0603010:CDS
GTTCCTGATACCAAGATAAA+AGG 0.297250 4_2:-47195859 Msa0603010:CDS
CATCACCTTCTTCATTATCT+TGG 0.303254 4_2:+47196512 None:intergenic
CATTATCTTGGAAGCGTTGT+AGG 0.308701 4_2:+47196524 None:intergenic
TTGATGATTTAGTTATGTTT+TGG 0.309038 4_2:+47195684 None:intergenic
GTTTCCGTTAATGATTGTTT+TGG 0.312248 4_2:-47194495 Msa0603010:three_prime_UTR
ATTCTTTCTTGCTAGAAAAT+CGG 0.324655 4_2:-47197879 Msa0603010:five_prime_UTR
TCGATTATGCAGTGGAAATT+TGG 0.333443 4_2:-47198905 Msa0603010:intron
AAGTTCATTGAAAGCATAGA+TGG 0.344830 4_2:+47197081 None:intergenic
TGCAATGGGACAAGTGTAAA+TGG 0.348423 4_2:-47200234 Msa0603010:five_prime_UTR
GATGAAGTTTCTTGCTGAAA+AGG 0.356076 4_2:-47198845 Msa0603010:five_prime_UTR
GATGATCCCGCAGATGTTTA+CGG 0.359304 4_2:-47196198 Msa0603010:CDS
TCCGATCATCATATATATTT+GGG 0.359571 4_2:-47195375 Msa0603010:three_prime_UTR
TGCTGTGATTGAGAAAATTA+AGG 0.360634 4_2:-47197511 Msa0603010:five_prime_UTR
TTGACAGGGTCACCGCTTAC+AGG 0.365325 4_2:+47196595 None:intergenic
TGTGATCGAACCGACTTGTT+TGG 0.366425 4_2:-47197719 Msa0603010:five_prime_UTR
GGTTTCAAATGCAACAAACT+TGG 0.375630 4_2:-47198292 Msa0603010:five_prime_UTR
GTCACTGTCATCTTCCTCTT+CGG 0.375822 4_2:+47196552 None:intergenic
TTTGGTCGATGCAACATTAT+GGG 0.378967 4_2:-47198887 Msa0603010:five_prime_UTR
TCCGGTGGTTGAGAGGTTTA+GGG 0.382872 4_2:-47198615 Msa0603010:five_prime_UTR
GTTGGGATACCTATAGGATA+TGG 0.388445 4_2:-47199475 Msa0603010:five_prime_UTR
AATTTGTTAAATAAAATTGT+AGG 0.391318 4_2:-47195594 Msa0603010:three_prime_UTR
CACCTAATCTTTGCAACAAC+TGG 0.391466 4_2:-47198670 Msa0603010:five_prime_UTR
AAGAAAAGGGAGAGAGAAAC+GGG 0.392118 4_2:-47200778 Msa0603010:five_prime_UTR
AAAGAAAAGGGAGAGAGAAA+CGG 0.396100 4_2:-47200779 Msa0603010:five_prime_UTR
TTCTTTCTTGCTAGAAAATC+GGG 0.399754 4_2:-47197878 Msa0603010:five_prime_UTR
AATTCCAAAACAATCATTAA+CGG 0.403566 4_2:+47194491 None:intergenic
TCTATAAGAGAGGGACTGTT+TGG 0.404011 4_2:+47196124 None:intergenic
CTTGAGCAGCAGGATACAAC+TGG 0.406510 4_2:-47196395 Msa0603010:CDS
TAGGAGAAAGGGAAAGCGAT+GGG 0.409351 4_2:-47200638 Msa0603010:five_prime_UTR
CATGCCCAGTGCAAGATTGC+AGG 0.415754 4_2:-47198789 Msa0603010:intron
TTTGTCTTTGAGCACAAGAT+TGG 0.421142 4_2:+47199002 None:intergenic
GTTTATCAATTTGAAACATC+CGG 0.422520 4_2:-47198633 Msa0603010:five_prime_UTR
AAGTCGACGTTATTTGGATC+TGG 0.425700 4_2:-47199039 Msa0603010:five_prime_UTR
CCACTTTGAAATCTCCATCT+TGG 0.426248 4_2:+47199192 None:intergenic
AAGATAAAGAAAGGAACAAA+GGG 0.428594 4_2:-47199421 Msa0603010:five_prime_UTR
GTGAGGAAGAGTAGGAGAAA+GGG 0.429327 4_2:-47200649 Msa0603010:five_prime_UTR
ATTTGTTAAATAAAATTGTA+GGG 0.434717 4_2:-47195593 Msa0603010:three_prime_UTR
TCAGCAATGGCTTGAGCAGC+AGG 0.435184 4_2:-47196405 Msa0603010:CDS
GTTTCAAATGCAACAAACTT+GGG 0.437289 4_2:-47198291 Msa0603010:five_prime_UTR
TAATTAGTATAGTACTATAT+AGG 0.439319 4_2:-47199832 Msa0603010:five_prime_UTR
TTGCTGAAAAGGAAGGAAAC+AGG 0.440746 4_2:-47198834 Msa0603010:five_prime_UTR
AGATGGGGCAAACACTTATT+CGG 0.441854 4_2:+47197098 None:intergenic
AACGGGAACGGGAGAAGAAA+GGG 0.446044 4_2:-47200761 Msa0603010:five_prime_UTR
AATCTTTGCAACAACTGGTC+CGG 0.453619 4_2:-47198665 Msa0603010:five_prime_UTR
GAATTTGGCAGAAACAACTT+TGG 0.454646 4_2:+47194938 None:intergenic
ATAACTAAATCATCAAAGAT+AGG 0.460894 4_2:-47195677 Msa0603010:CDS
ACAACGCTTTGTAAGATTTG+AGG 0.461225 4_2:+47194830 None:intergenic
AAAGGAGATCCATATCCTAT+AGG 0.461389 4_2:+47199466 None:intergenic
GAGCCAGAGGTGATCTTAAG+AGG 0.462766 4_2:-47197465 Msa0603010:five_prime_UTR
AAACGGGAACGGGAGAAGAA+AGG 0.462790 4_2:-47200762 Msa0603010:five_prime_UTR
TAACAGAACGACGAAATTGA+TGG 0.463467 4_2:-47200598 Msa0603010:five_prime_UTR
TCATCGACAAAAGCCTTGAC+AGG 0.469980 4_2:+47196580 None:intergenic
ATTATTCAATTGAAATCCAT+TGG 0.470369 4_2:-47197638 Msa0603010:five_prime_UTR
GGAGAAAGGGAAAGCGATGG+GGG 0.471413 4_2:-47200636 Msa0603010:five_prime_UTR
CGGCTGAAGATGAAAGCAGC+AGG 0.472410 4_2:-47195915 Msa0603010:CDS
GCAGCAGTTGGGATACCTAT+AGG 0.472722 4_2:-47199481 Msa0603010:five_prime_UTR
GGATAAAGGAGCACTTCATC+AGG 0.473283 4_2:+47195622 None:intergenic
AATTTGGCAGAAACAACTTT+GGG 0.476283 4_2:+47194939 None:intergenic
AAGAAACGTCTAAGAGGTCT+AGG 0.477131 4_2:+47200010 None:intergenic
CTGCTGCTTTCATCTTCAGC+CGG 0.477500 4_2:+47195916 None:intergenic
TGAGTTAATATCAACACAAC+AGG 0.477976 4_2:+47198810 None:intergenic
ACTTACACATCACCATCAAC+AGG 0.478005 4_2:+47197042 None:intergenic
AATGTGTGGCATATCAAATA+TGG 0.478119 4_2:+47195709 None:intergenic
GCTGCTCAAGCCATTGCTGA+TGG 0.482598 4_2:+47196408 None:intergenic
AATACCTGGGTATCATCAAC+AGG 0.482930 4_2:+47197270 None:intergenic
TGGTTGAGAGGTTTAGGGCT+AGG 0.484130 4_2:-47198610 Msa0603010:intron
AGGGAGAGAGAAACGGGAAC+GGG 0.484162 4_2:-47200772 Msa0603010:five_prime_UTR
GTTATGGTGTTTAGAGTTGG+TGG 0.485139 4_2:-47200122 Msa0603010:five_prime_UTR
ATCTTTGCAACAACTGGTCC+GGG 0.487492 4_2:-47198664 Msa0603010:five_prime_UTR
ATTCACCTGCAATCTTGCAC+TGG 0.488140 4_2:+47198784 None:intergenic
TAGAATTTGATGGCAGCAGT+TGG 0.491226 4_2:-47199493 Msa0603010:five_prime_UTR
AACACAGTGCCACACTTACA+TGG 0.491229 4_2:-47196637 Msa0603010:CDS
TGAGTTATGGTGTTTAGAGT+TGG 0.493376 4_2:-47200125 Msa0603010:five_prime_UTR
TGTGAAATGATGGTATTAAT+CGG 0.496057 4_2:-47194710 Msa0603010:three_prime_UTR
GACGAAATTGATGGGGAGAA+AGG 0.496180 4_2:-47200589 Msa0603010:five_prime_UTR
AAGATTAGTGCAGGAAGTGA+TGG 0.496426 4_2:-47200088 Msa0603010:five_prime_UTR
AAACGGGAAAGGGAGGAAAA+CGG 0.496880 4_2:-47200724 Msa0603010:five_prime_UTR
ACGGGAGAAGAAAGGGAAAA+CGG 0.497208 4_2:-47200754 Msa0603010:five_prime_UTR
ATTAAAGAAGAGGCTCTCAA+TGG 0.499831 4_2:-47197138 Msa0603010:five_prime_UTR
ACGAAGAAGTCAATTAAGAC+AGG 0.499928 4_2:-47194753 Msa0603010:three_prime_UTR
CAAGCCATTGCTGATGGAGT+TGG 0.500045 4_2:+47196414 None:intergenic
CGAACACGGTCAAGAATTGC+TGG 0.500753 4_2:+47199393 None:intergenic
GAGTTCAACTAAATTCTCAA+TGG 0.504073 4_2:+47197439 None:intergenic
GTGGATAGTATGTATGCAAT+GGG 0.505137 4_2:-47200248 Msa0603010:five_prime_UTR
GGTGAGGAAGAGTAGGAGAA+AGG 0.506541 4_2:-47200650 Msa0603010:five_prime_UTR
CTTGTCATTGTCCTCATCAT+CGG 0.507226 4_2:+47196663 None:intergenic
GATGTATCTGTGAGGGTCAA+AGG 0.507460 4_2:+47199448 None:intergenic
ATGCCTTCTTCTCAAAAGCA+TGG 0.508089 4_2:-47195409 Msa0603010:three_prime_UTR
AAGGGAGAGAGAAACGGGAA+CGG 0.508194 4_2:-47200773 Msa0603010:five_prime_UTR
TAATAAAGCACAATTTCCTC+TGG 0.513963 4_2:+47197657 None:intergenic
GACCAGTTGTTGCAAAGATT+AGG 0.514745 4_2:+47198668 None:intergenic
CTTCCTCTTAAGATCACCTC+TGG 0.514845 4_2:+47197462 None:intergenic
AATTGACATTTCATTGCTTG+TGG 0.514900 4_2:-47198239 Msa0603010:intron
AGGAGAAAGGGAAAGCGATG+GGG 0.516756 4_2:-47200637 Msa0603010:five_prime_UTR
TTGCTTGGAGATAAACTCCT+TGG 0.517887 4_2:-47200060 Msa0603010:five_prime_UTR
CAAGATAAAGAAAGGAACAA+AGG 0.518432 4_2:-47199422 Msa0603010:five_prime_UTR
ATTCTTGACCGTGTTCGCGA+TGG 0.519390 4_2:-47199387 Msa0603010:five_prime_UTR
TTAAAGAAGAGGCTCTCAAT+GGG 0.520151 4_2:-47197137 Msa0603010:five_prime_UTR
ACCTGTAAGAAACGTCTAAG+AGG 0.521381 4_2:+47200004 None:intergenic
TCTGGTAACAAGATTAGTGC+AGG 0.522139 4_2:-47200097 Msa0603010:five_prime_UTR
CTCCAGGTCTTCCGATGATG+AGG 0.523194 4_2:-47196674 Msa0603010:intron
CTTTATCCGTAAACATCTGC+GGG 0.523224 4_2:+47196192 None:intergenic
GCTCCATTCCACCAGGATGA+AGG 0.523667 4_2:+47197484 None:intergenic
AGAATTTGATGGCAGCAGTT+GGG 0.524314 4_2:-47199492 Msa0603010:five_prime_UTR
ATCTGACGATGAAGTTGAAG+AGG 0.529423 4_2:-47196324 Msa0603010:CDS
CGCTTCCAAGATAATGAAGA+AGG 0.530519 4_2:-47196517 Msa0603010:intron
GTCAGAGGATTCTTCAGATA+CGG 0.530551 4_2:-47195317 Msa0603010:intron
CATCATTCTCATGCTTCTGG+TGG 0.534522 4_2:-47200037 Msa0603010:five_prime_UTR
ACATCAAGCAAGATAAAGAA+AGG 0.535370 4_2:-47199430 Msa0603010:five_prime_UTR
AGAGTCAAATGTATCACTGA+TGG 0.535371 4_2:-47194868 Msa0603010:three_prime_UTR
TTTGTCTAGGTTCTTGACCA+TGG 0.538415 4_2:-47197905 Msa0603010:intron
AACAGAACGACGAAATTGAT+GGG 0.538983 4_2:-47200597 Msa0603010:five_prime_UTR
GTAGGAGAAAGGGAAAGCGA+TGG 0.539343 4_2:-47200639 Msa0603010:five_prime_UTR
GGTTGTATCTCAGATTATAA+GGG 0.541946 4_2:-47194973 Msa0603010:intron
TCACCTTCATCCTGGTGGAA+TGG 0.544091 4_2:-47197487 Msa0603010:five_prime_UTR
TCCTTTAAGGAGATCCAAGA+TGG 0.544360 4_2:-47199206 Msa0603010:five_prime_UTR
TAATAACAATAATGAGGAGA+TGG 0.550228 4_2:-47200173 Msa0603010:five_prime_UTR
ACCTCTGGCTCCATTCCACC+AGG 0.550691 4_2:+47197477 None:intergenic
GAAGTGATGGAAAAGTTGCT+TGG 0.551623 4_2:-47200075 Msa0603010:five_prime_UTR
GCCCTAAACCTCTCAACCAC+CGG 0.553362 4_2:+47198614 None:intergenic
TCCCAAATATATATGATGAT+CGG 0.554179 4_2:+47195374 None:intergenic
AATAAATGATATTAAAGAAG+AGG 0.554410 4_2:-47197148 Msa0603010:five_prime_UTR
AGTGGATAGTATGTATGCAA+TGG 0.556770 4_2:-47200249 Msa0603010:five_prime_UTR
TTTCAAATGCAACAAACTTG+GGG 0.558483 4_2:-47198290 Msa0603010:five_prime_UTR
TTGATCTTCACAGCATCAGA+TGG 0.562695 4_2:+47196239 None:intergenic
CACTGATGGAGATATTAAGC+AGG 0.563186 4_2:-47194854 Msa0603010:three_prime_UTR
TGAAAGGATGAGATGAGTTA+TGG 0.565427 4_2:-47200138 Msa0603010:five_prime_UTR
ATCAGTGATACATTTGACTC+TGG 0.565481 4_2:+47194870 None:intergenic
TATTAAACGCCTATAACCAA+TGG 0.565730 4_2:+47197622 None:intergenic
AAGTTTCTTGCTGAAAAGGA+AGG 0.565946 4_2:-47198841 Msa0603010:five_prime_UTR
TAGACTTTACATTTATCCCA+AGG 0.567151 4_2:+47194651 None:intergenic
AGTTCATTGAAAGCATAGAT+GGG 0.567377 4_2:+47197082 None:intergenic
CGAAGAAGTCAATTAAGACA+GGG 0.568898 4_2:-47194752 Msa0603010:three_prime_UTR
TGAAACATCCGGTGGTTGAG+AGG 0.570553 4_2:-47198622 Msa0603010:five_prime_UTR
CTTGCTTGATGTATCTGTGA+GGG 0.571405 4_2:+47199441 None:intergenic
ATTAAGGCTCACCTTCATCC+TGG 0.572237 4_2:-47197495 Msa0603010:five_prime_UTR
CGGCGTCGGTGAGGAAGAGT+AGG 0.573684 4_2:-47200657 Msa0603010:five_prime_UTR
TTTGGACCTCCATGGGACAT+CGG 0.574097 4_2:-47194685 Msa0603010:three_prime_UTR
TGGAGATTTAGAAGTTGAAG+TGG 0.585788 4_2:+47194890 None:intergenic
TGATGTATGATGTGAAATGA+TGG 0.587888 4_2:-47194720 Msa0603010:three_prime_UTR
TCCTCTGACATCAACACTGA+AGG 0.589871 4_2:+47195331 None:intergenic
AAGGAAACGGTGAAGAGCAA+GGG 0.591278 4_2:-47200570 Msa0603010:five_prime_UTR
TTAGTATAGTACTATATAGG+TGG 0.591398 4_2:-47199829 Msa0603010:five_prime_UTR
AAAGGAAACGGTGAAGAGCA+AGG 0.593331 4_2:-47200571 Msa0603010:five_prime_UTR
TTGTTAAATAAAATTGTAGG+GGG 0.593520 4_2:-47195591 Msa0603010:three_prime_UTR
AACTCACAACTCTATAAGAG+AGG 0.593686 4_2:+47196114 None:intergenic
GACTTGTCTTTACCTGTAAG+CGG 0.595049 4_2:-47196607 Msa0603010:CDS
ATTATGGGACAAATATTCTG+TGG 0.596146 4_2:-47198872 Msa0603010:five_prime_UTR
TGTGAAGATCAATCTGAAGA+AGG 0.597643 4_2:-47196228 Msa0603010:CDS
TTTGTTAAATAAAATTGTAG+GGG 0.598200 4_2:-47195592 Msa0603010:three_prime_UTR
ATTGATGGGGAGAAAGGAAA+CGG 0.599048 4_2:-47200583 Msa0603010:five_prime_UTR
TTCACCTGCAATCTTGCACT+GGG 0.600210 4_2:+47198785 None:intergenic
TGTCGATGAAGAAGCCGAAG+AGG 0.600579 4_2:-47196566 Msa0603010:CDS
TGTAAGCGGTGACCCTGTCA+AGG 0.600745 4_2:-47196593 Msa0603010:CDS
GAATAGTAATAACAATAATG+AGG 0.602247 4_2:-47200179 Msa0603010:five_prime_UTR
ATATTTGATATGCCACACAT+TGG 0.602377 4_2:-47195707 Msa0603010:CDS
AGAAAGAGCATTGAATTCAG+TGG 0.603658 4_2:-47200267 Msa0603010:five_prime_UTR
ACCTTCAGTGTTGATGTCAG+AGG 0.605071 4_2:-47195332 Msa0603010:three_prime_UTR
GCAGCAGGATACAACTGGGA+TGG 0.605675 4_2:-47196390 Msa0603010:CDS
ATGATGAATGCTGATGACTT+AGG 0.609577 4_2:+47197681 None:intergenic
AGCTCCTGTTGATGATACCC+AGG 0.611990 4_2:-47197274 Msa0603010:intron
CAATAATGAGGAGATGGTGA+AGG 0.612556 4_2:-47200167 Msa0603010:five_prime_UTR
TCCTGGTGGAATGGAGCCAG+AGG 0.614695 4_2:-47197478 Msa0603010:five_prime_UTR
ATGGTGAAGGTGAAGATGAA+AGG 0.618034 4_2:-47200154 Msa0603010:five_prime_UTR
TAAAATGTTAGTAGCAGCTG+AGG 0.618436 4_2:-47199636 Msa0603010:intron
CGATGATGAGGACAATGACA+AGG 0.619728 4_2:-47196662 Msa0603010:CDS
TCAACACTCCATCGCGAACA+CGG 0.621130 4_2:+47199379 None:intergenic
GAAGCATGAGAATGATGCCA+AGG 0.622765 4_2:+47200043 None:intergenic
TCAAAAGCATGGATCAAGCA+AGG 0.624049 4_2:-47195398 Msa0603010:three_prime_UTR
AAGACCAACTCCATCAGCAA+TGG 0.627189 4_2:-47196418 Msa0603010:CDS
ATTGATAAACAACTTTGACC+CGG 0.627458 4_2:+47198646 None:intergenic
ACTCACAACTCTATAAGAGA+GGG 0.630084 4_2:+47196115 None:intergenic
TCTTTATCCGTAAACATCTG+CGG 0.632377 4_2:+47196191 None:intergenic
TTCAAATGCAACAAACTTGG+GGG 0.632464 4_2:-47198289 Msa0603010:five_prime_UTR
GGCTGAAGATGAAAGCAGCA+GGG 0.633689 4_2:-47195914 Msa0603010:CDS
TAGCAAGAAAGAATCATCCA+TGG 0.634446 4_2:+47197888 None:intergenic
TCTTGCTTGATGTATCTGTG+AGG 0.638108 4_2:+47199440 None:intergenic
CGTAGAATCTCCAAACAAGT+CGG 0.644113 4_2:+47197709 None:intergenic
TCAGCTGATCCATGTAAGTG+TGG 0.647244 4_2:+47196628 None:intergenic
GTGTTCGCGATGGAGTGTTG+AGG 0.648666 4_2:-47199377 Msa0603010:five_prime_UTR
ATCAGCATTCATCATACCAG+AGG 0.649150 4_2:-47197673 Msa0603010:five_prime_UTR
CTACTCCAGAAACTTAATTG+CGG 0.654037 4_2:-47196362 Msa0603010:CDS
AAGGCTCACCTTCATCCTGG+TGG 0.655440 4_2:-47197492 Msa0603010:five_prime_UTR
CATCGACAAAAGCCTTGACA+GGG 0.655621 4_2:+47196581 None:intergenic
AGGAAACGGTGAAGAGCAAG+GGG 0.657415 4_2:-47200569 Msa0603010:five_prime_UTR
ATCATCTGATGAGGAAACTG+AGG 0.662710 4_2:-47196156 Msa0603010:CDS
GCTGAAGATGAAAGCAGCAG+GGG 0.663173 4_2:-47195913 Msa0603010:CDS
TTGAGCACAAGATTGGTACA+CGG 0.672007 4_2:+47199009 None:intergenic
ACTTTACATTTATCCCAAGG+AGG 0.673211 4_2:+47194654 None:intergenic
GTTCATTGAAAGCATAGATG+GGG 0.673358 4_2:+47197083 None:intergenic
CTGATGAGGAAACTGAGGAG+TGG 0.674721 4_2:-47196151 Msa0603010:CDS
TGAATGCTGATGACTTAGGT+TGG 0.678310 4_2:+47197685 None:intergenic
CCAAGATGGAGATTTCAAAG+TGG 0.679020 4_2:-47199192 Msa0603010:five_prime_UTR
TTGAGCAGCAGGATACAACT+GGG 0.682128 4_2:-47196394 Msa0603010:CDS
TGCATATGTATCATCTGATG+AGG 0.684397 4_2:-47196165 Msa0603010:CDS
AGAAATAATCACATTAAACA+CGG 0.690350 4_2:+47195491 None:intergenic
GAAGAAGTCAATTAAGACAG+GGG 0.696735 4_2:-47194751 Msa0603010:three_prime_UTR
GATAAAGAAAGGAACAAAGG+GGG 0.697638 4_2:-47199419 Msa0603010:five_prime_UTR
AGATAAAGAAAGGAACAAAG+GGG 0.697836 4_2:-47199420 Msa0603010:five_prime_UTR
ACAGAACGACGAAATTGATG+GGG 0.699911 4_2:-47200596 Msa0603010:five_prime_UTR
TATCAATTTGAAACATCCGG+TGG 0.700893 4_2:-47198630 Msa0603010:five_prime_UTR
TGAAGTTGAAGAGGAAGACG+AGG 0.701412 4_2:-47196315 Msa0603010:CDS
AAACGTCTAAGAGGTCTAGG+TGG 0.706543 4_2:+47200013 None:intergenic
GTAAGAGAAAGGGAAAGTGA+CGG 0.710423 4_2:-47200690 Msa0603010:five_prime_UTR
AAACCTAGAACTGATGACTG+AGG 0.723563 4_2:+47197546 None:intergenic
GGAGAAGAAAGGGAAAACGG+CGG 0.773958 4_2:-47200751 Msa0603010:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGTTAAATAAAATTGT+AGG - chr4_2:47199637-47199656 Msa0603010:five_prime_UTR 10.0%
!!! ATTTGTTAAATAAAATTGTA+GGG - chr4_2:47199638-47199657 Msa0603010:five_prime_UTR 10.0%
!! AAAAAATTAATCAATCAAAC+AGG + chr4_2:47194810-47194829 None:intergenic 15.0%
!!! TTGTTTTTTCTTTCTTTAAA+AGG - chr4_2:47195277-47195296 Msa0603010:intron 15.0%
!! TAATTAGTATAGTACTATAT+AGG - chr4_2:47195399-47195418 Msa0603010:three_prime_UTR 15.0%
!!! GTTATTGATTTTTAGTATTT+TGG - chr4_2:47195970-47195989 Msa0603010:intron 15.0%
!! TACAACAAATTTAAACAATT+AGG + chr4_2:47196091-47196110 None:intergenic 15.0%
!!! TTGTTTAAATTTGTTGTATT+TGG - chr4_2:47196093-47196112 Msa0603010:intron 15.0%
!!! TTTTTTCTTTAAGAAATCAT+TGG - chr4_2:47196150-47196169 Msa0603010:CDS 15.0%
!! GCAAAAATAAAAATTGAAAT+TGG - chr4_2:47196756-47196775 Msa0603010:intron 15.0%
!!! AGATTTTATTATACACAAAT+TGG - chr4_2:47197031-47197050 Msa0603010:intron 15.0%
!!! AAAATTACCAATATCTTTTT+AGG + chr4_2:47197450-47197469 None:intergenic 15.0%
!!! TTAATATTCTTTCTTTTTTG+TGG - chr4_2:47197626-47197645 Msa0603010:five_prime_UTR 15.0%
!! ACATAAAGTATGTTTATTAA+AGG - chr4_2:47197841-47197860 Msa0603010:intron 15.0%
!! AATAAATGATATTAAAGAAG+AGG - chr4_2:47198083-47198102 Msa0603010:intron 15.0%
!!! TTTTATTTAACAAATTTGCT+GGG + chr4_2:47199633-47199652 None:intergenic 15.0%
!!! ATTTTATTTAACAAATTTGC+TGG + chr4_2:47199634-47199653 None:intergenic 15.0%
!! TTTGTTAAATAAAATTGTAG+GGG - chr4_2:47199639-47199658 Msa0603010:five_prime_UTR 15.0%
!!! ATATTTCAGTTATCTTTTAT+CGG - chr4_2:47199780-47199799 Msa0603010:intron 15.0%
!! GTTTAAATAGCATTTAAAAA+AGG + chr4_2:47200177-47200196 None:intergenic 15.0%
!!! TAATTTTTTGATCAATTGAG+AGG - chr4_2:47194821-47194840 Msa0603010:three_prime_UTR 20.0%
!! ATATATAATGAAACAGTATG+TGG - chr4_2:47194928-47194947 Msa0603010:three_prime_UTR 20.0%
!! GAATAGTAATAACAATAATG+AGG - chr4_2:47195052-47195071 Msa0603010:intron 20.0%
!! GAAAGAAAAAACAAATGATT+TGG + chr4_2:47195271-47195290 None:intergenic 20.0%
!!! TTTTTGCATGTCTATAAAAT+TGG - chr4_2:47195946-47195965 Msa0603010:intron 20.0%
!! AATTATATAGATGCTAATGA+AGG - chr4_2:47196122-47196141 Msa0603010:CDS 20.0%
!! ATTATATAGATGCTAATGAA+GGG - chr4_2:47196123-47196142 Msa0603010:CDS 20.0%
!!! ATTTTGGACATTTACTATTT+TGG - chr4_2:47196470-47196489 Msa0603010:intron 20.0%
!! ACAAAACAACTAAAAAGATA+AGG + chr4_2:47197311-47197330 None:intergenic 20.0%
!! TCTAAATCCTAAAAAGATAT+TGG - chr4_2:47197440-47197459 Msa0603010:five_prime_UTR 20.0%
!!! AGATATTGGTAATTTTCTAT+AGG - chr4_2:47197454-47197473 Msa0603010:five_prime_UTR 20.0%
!!! GATATTGGTAATTTTCTATA+GGG - chr4_2:47197455-47197474 Msa0603010:five_prime_UTR 20.0%
!! ATTATTCAATTGAAATCCAT+TGG - chr4_2:47197593-47197612 Msa0603010:five_prime_UTR 20.0%
!!! TTTATTTGTCTTTGATTTCT+AGG - chr4_2:47198041-47198060 Msa0603010:intron 20.0%
!! ATAAACTATAATCCTTACTT+TGG - chr4_2:47198324-47198343 Msa0603010:intron 20.0%
!! TAAACTATAATCCTTACTTT+GGG - chr4_2:47198325-47198344 Msa0603010:intron 20.0%
!! TCAAAATTGTAATATGTAAC+AGG - chr4_2:47199269-47199288 Msa0603010:intron 20.0%
!! TAAAATTAACAGATCTTACA+TGG + chr4_2:47199405-47199424 None:intergenic 20.0%
!!! ATTTTAGTATTTCACGAAAT+TGG - chr4_2:47199419-47199438 Msa0603010:five_prime_UTR 20.0%
!!! TTGATGATTTAGTTATGTTT+TGG + chr4_2:47199550-47199569 None:intergenic 20.0%
!! ATAACTAAATCATCAAAGAT+AGG - chr4_2:47199554-47199573 Msa0603010:intron 20.0%
!! TTGTTAAATAAAATTGTAGG+GGG - chr4_2:47199640-47199659 Msa0603010:five_prime_UTR 20.0%
!! AGAAATAATCACATTAAACA+CGG + chr4_2:47199743-47199762 None:intergenic 20.0%
!! ATGCTAAACATAAATTTAGT+TGG + chr4_2:47200077-47200096 None:intergenic 20.0%
!! CTGAAAAAAAAGAAATCAAA+AGG + chr4_2:47200665-47200684 None:intergenic 20.0%
!! AATTCCAAAACAATCATTAA+CGG + chr4_2:47200743-47200762 None:intergenic 20.0%
!! TGGTATATTTTGCTCTTTTA+TGG - chr4_2:47194745-47194764 Msa0603010:three_prime_UTR 25.0%
!! TGTTTTCTTCATTCCTTTTT+TGG - chr4_2:47194849-47194868 Msa0603010:three_prime_UTR 25.0%
!!! ATTCCTTTTTTGGTTAATTG+AGG - chr4_2:47194859-47194878 Msa0603010:three_prime_UTR 25.0%
! TAATAACAATAATGAGGAGA+TGG - chr4_2:47195058-47195077 Msa0603010:intron 25.0%
! ATCACAATCATAATAAAGCA+GGG + chr4_2:47195321-47195340 None:intergenic 25.0%
! TATCACAATCATAATAAAGC+AGG + chr4_2:47195322-47195341 None:intergenic 25.0%
! TTAGTATAGTACTATATAGG+TGG - chr4_2:47195402-47195421 Msa0603010:three_prime_UTR 25.0%
!!! ATTCTACTTGAGAACTTTTT+TGG - chr4_2:47195440-47195459 Msa0603010:three_prime_UTR 25.0%
! AAACACAAGAAAATGAAAAC+AGG + chr4_2:47195690-47195709 None:intergenic 25.0%
!!! GAATGCATTTTAGAATTTGA+TGG - chr4_2:47195728-47195747 Msa0603010:intron 25.0%
! AAGATAAAGAAAGGAACAAA+GGG - chr4_2:47195810-47195829 Msa0603010:intron 25.0%
!!! CTTTGTTTGTGTCATTTTTT+TGG - chr4_2:47196515-47196534 Msa0603010:intron 25.0%
!!! GGTTCTTATTTTTCAGATAA+CGG - chr4_2:47196536-47196555 Msa0603010:CDS 25.0%
!! GTTTATCAATTTGAAACATC+CGG - chr4_2:47196598-47196617 Msa0603010:CDS 25.0%
! TAGTAGCTCAAATTAAGTTT+GGG - chr4_2:47196873-47196892 Msa0603010:intron 25.0%
! CTGTCAAATTGAATTTGATT+CGG - chr4_2:47197221-47197240 Msa0603010:intron 25.0%
!!! TCTTTTTAGTTGTTTTGTCT+AGG - chr4_2:47197313-47197332 Msa0603010:intron 25.0%
! ATTCTTTCTTGCTAGAAAAT+CGG - chr4_2:47197352-47197371 Msa0603010:intron 25.0%
!! AATTGAAATCCATTGGTTAT+AGG - chr4_2:47197600-47197619 Msa0603010:five_prime_UTR 25.0%
!!! TATTCTTTCTTTTTTGTGGT+AGG - chr4_2:47197630-47197649 Msa0603010:five_prime_UTR 25.0%
!!! AAGAAAGCATCTGAATAAAT+GGG + chr4_2:47197993-47198012 None:intergenic 25.0%
!!! TAAGAAAGCATCTGAATAAA+TGG + chr4_2:47197994-47198013 None:intergenic 25.0%
! ACTAAATCTGAAGATAACAA+AGG + chr4_2:47198230-47198249 None:intergenic 25.0%
! ATAGACAATGAAACTTTATG+TGG + chr4_2:47198267-47198286 None:intergenic 25.0%
! TAGCTATATGGTTGTTAATT+TGG - chr4_2:47198355-47198374 Msa0603010:intron 25.0%
!!! GTTAATTTGGATTTTTACGT+TGG - chr4_2:47198368-47198387 Msa0603010:intron 25.0%
!! ATTTTTACGTTGGAAAATTC+TGG - chr4_2:47198378-47198397 Msa0603010:intron 25.0%
! AATGATGAGAAAGTAAATGA+TGG - chr4_2:47198407-47198426 Msa0603010:intron 25.0%
!!! AAAAGGCAAAGGTTTTTTAA+AGG + chr4_2:47198462-47198481 None:intergenic 25.0%
! TACACTATGGAAGAATTAAA+AGG + chr4_2:47198479-47198498 None:intergenic 25.0%
!!! TTTTAATTCTTCCATAGTGT+AGG - chr4_2:47198478-47198497 Msa0603010:intron 25.0%
!!! ATTTTTAACTTCCAGAACAA+TGG + chr4_2:47198521-47198540 None:intergenic 25.0%
! CTTAATGATATGATAACAAC+TGG - chr4_2:47198762-47198781 Msa0603010:intron 25.0%
! TCCGATCATCATATATATTT+GGG - chr4_2:47199856-47199875 Msa0603010:intron 25.0%
! TCCCAAATATATATGATGAT+CGG + chr4_2:47199860-47199879 None:intergenic 25.0%
! TAGCATAATTCATAGAAGAA+TGG + chr4_2:47199996-47200015 None:intergenic 25.0%
! TTCATCAGTTGAAATTCATA+TGG - chr4_2:47200049-47200068 Msa0603010:five_prime_UTR 25.0%
! AATAGCATTTAAAAAAGGAG+AGG + chr4_2:47200172-47200191 None:intergenic 25.0%
! ATTTGTTCTGTGTATTTCTT+TGG + chr4_2:47200318-47200337 None:intergenic 25.0%
! TGTGAAATGATGGTATTAAT+CGG - chr4_2:47200521-47200540 Msa0603010:intron 25.0%
TGCTTGCATGTTTAGATTAT+TGG - chr4_2:47194725-47194744 Msa0603010:three_prime_UTR 30.0%
! TTTTTCTCTGCTTCTTCTAT+TGG - chr4_2:47194784-47194803 Msa0603010:three_prime_UTR 30.0%
CAACCTCAATTAACCAAAAA+AGG + chr4_2:47194865-47194884 None:intergenic 30.0%
TTTGTTTGTATGCAAAACAG+TGG - chr4_2:47195362-47195381 Msa0603010:three_prime_UTR 30.0%
! AACCTCATATAACATTTTGC+AGG - chr4_2:47195534-47195553 Msa0603010:three_prime_UTR 30.0%
TTCCTGCAAAATGTTATATG+AGG + chr4_2:47195539-47195558 None:intergenic 30.0%
!! ATTCTAAAATGCATTCGAGT+TGG + chr4_2:47195724-47195743 None:intergenic 30.0%
ACATCAAGCAAGATAAAGAA+AGG - chr4_2:47195801-47195820 Msa0603010:intron 30.0%
CAAGATAAAGAAAGGAACAA+AGG - chr4_2:47195809-47195828 Msa0603010:intron 30.0%
AGATAAAGAAAGGAACAAAG+GGG - chr4_2:47195811-47195830 Msa0603010:intron 30.0%
! TTTTAGTGACATACATGTGA+AGG + chr4_2:47195911-47195930 None:intergenic 30.0%
TAAATCGGAATTCATTTCAG+AGG + chr4_2:47196003-47196022 None:intergenic 30.0%
ATTCCGATTTAAGTCCTTTA+AGG - chr4_2:47196012-47196031 Msa0603010:intron 30.0%
TCTCCTTAAAGGACTTAAAT+CGG + chr4_2:47196018-47196037 None:intergenic 30.0%
! TTCAAAGTGGATGTTTTGTA+TGG - chr4_2:47196052-47196071 Msa0603010:intron 30.0%
ATAGTAAAGTCGACGTTATT+TGG - chr4_2:47196186-47196205 Msa0603010:CDS 30.0%
ATTATGGGACAAATATTCTG+TGG - chr4_2:47196359-47196378 Msa0603010:CDS 30.0%
TGAGTTAATATCAACACAAC+AGG + chr4_2:47196424-47196443 None:intergenic 30.0%
! AAGATTGCAGGTGAATATTT+TGG - chr4_2:47196454-47196473 Msa0603010:intron 30.0%
ATTGATAAACAACTTTGACC+CGG + chr4_2:47196588-47196607 None:intergenic 30.0%
! ACTTCAAGTTTCATATTGCA+TGG + chr4_2:47196854-47196873 None:intergenic 30.0%
GTAGTAGCTCAAATTAAGTT+TGG - chr4_2:47196872-47196891 Msa0603010:intron 30.0%
GTTTCAAATGCAACAAACTT+GGG - chr4_2:47196940-47196959 Msa0603010:intron 30.0%
TTTCAAATGCAACAAACTTG+GGG - chr4_2:47196941-47196960 Msa0603010:intron 30.0%
AATTGACATTTCATTGCTTG+TGG - chr4_2:47196992-47197011 Msa0603010:intron 30.0%
GTATAAAAGAAAGTTGCATG+TGG - chr4_2:47197053-47197072 Msa0603010:CDS 30.0%
TTCTTTCTTGCTAGAAAATC+GGG - chr4_2:47197353-47197372 Msa0603010:intron 30.0%
TAATAAAGCACAATTTCCTC+TGG + chr4_2:47197577-47197596 None:intergenic 30.0%
TATTAAACGCCTATAACCAA+TGG + chr4_2:47197612-47197631 None:intergenic 30.0%
! TTAATTTTCTCAATCACAGC+AGG + chr4_2:47197721-47197740 None:intergenic 30.0%
TGCTGTGATTGAGAAAATTA+AGG - chr4_2:47197720-47197739 Msa0603010:five_prime_UTR 30.0%
GAGTTCAACTAAATTCTCAA+TGG + chr4_2:47197795-47197814 None:intergenic 30.0%
! TCAAAGACAAATAAAGCACT+TGG + chr4_2:47198036-47198055 None:intergenic 30.0%
! AGTTCATTGAAAGCATAGAT+GGG + chr4_2:47198152-47198171 None:intergenic 30.0%
! AAGTTCATTGAAAGCATAGA+TGG + chr4_2:47198153-47198172 None:intergenic 30.0%
AATCAGCAACATGAAACAAA+TGG + chr4_2:47198299-47198318 None:intergenic 30.0%
ATGGAAGAATTAAAAGGCAA+AGG + chr4_2:47198473-47198492 None:intergenic 30.0%
! TGATGATGATGATGATATCA+AGG - chr4_2:47198737-47198756 Msa0603010:intron 30.0%
!! TTGGTCTTTTCTCTATCAAT+TGG + chr4_2:47198801-47198820 None:intergenic 30.0%
!!! TATTGCTGTCACTTTGATTT+TGG - chr4_2:47199167-47199186 Msa0603010:intron 30.0%
CAAGATTATGACAATGCTAA+CGG - chr4_2:47199474-47199493 Msa0603010:five_prime_UTR 30.0%
AATGTGTGGCATATCAAATA+TGG + chr4_2:47199525-47199544 None:intergenic 30.0%
ATATTTGATATGCCACACAT+TGG - chr4_2:47199524-47199543 Msa0603010:intron 30.0%
!! TAACAAATTTGCTGGGATAA+AGG + chr4_2:47199626-47199645 None:intergenic 30.0%
!! TAAAAACAGTTTTGTGGTTC+AGG + chr4_2:47199706-47199725 None:intergenic 30.0%
! TGCTGATAAAAACAGTTTTG+TGG + chr4_2:47199712-47199731 None:intergenic 30.0%
GTCCGATCATCATATATATT+TGG - chr4_2:47199855-47199874 Msa0603010:intron 30.0%
TAATACTACTAGAACTGTGA+TGG - chr4_2:47200121-47200140 Msa0603010:five_prime_UTR 30.0%
GGTTGTATCTCAGATTATAA+GGG - chr4_2:47200258-47200277 Msa0603010:five_prime_UTR 30.0%
AATTTGGCAGAAACAACTTT+GGG + chr4_2:47200295-47200314 None:intergenic 30.0%
!! CTGTGTATTTCTTTGGAATT+TGG + chr4_2:47200311-47200330 None:intergenic 30.0%
TGATGTATGATGTGAAATGA+TGG - chr4_2:47200511-47200530 Msa0603010:intron 30.0%
!! TGATGGTATTAATCGGTTTT+TGG - chr4_2:47200528-47200547 Msa0603010:intron 30.0%
TAGACTTTACATTTATCCCA+AGG + chr4_2:47200583-47200602 None:intergenic 30.0%
TGTCTCAGTTTGCATATAAT+TGG + chr4_2:47200638-47200657 None:intergenic 30.0%
! GTTTCCGTTAATGATTGTTT+TGG - chr4_2:47200736-47200755 Msa0603010:five_prime_UTR 30.0%
AAAGAAAAGGGAGAGAGAAA+CGG - chr4_2:47194452-47194471 Msa0603010:three_prime_UTR 35.0%
GAAAAACTGCGTAAGAGAAA+GGG - chr4_2:47194531-47194550 Msa0603010:three_prime_UTR 35.0%
TAACAGAACGACGAAATTGA+TGG - chr4_2:47194633-47194652 Msa0603010:three_prime_UTR 35.0%
AACAGAACGACGAAATTGAT+GGG - chr4_2:47194634-47194653 Msa0603010:three_prime_UTR 35.0%
ATGTGTGGAAAATTGGGTTT+AGG - chr4_2:47194886-47194905 Msa0603010:three_prime_UTR 35.0%
TGTGTGGAAAATTGGGTTTA+GGG - chr4_2:47194887-47194906 Msa0603010:three_prime_UTR 35.0%
!! AGAAAGAGCATTGAATTCAG+TGG - chr4_2:47194964-47194983 Msa0603010:intron 35.0%
AGTGGATAGTATGTATGCAA+TGG - chr4_2:47194982-47195001 Msa0603010:intron 35.0%
GTGGATAGTATGTATGCAAT+GGG - chr4_2:47194983-47195002 Msa0603010:intron 35.0%
TGAAAGGATGAGATGAGTTA+TGG - chr4_2:47195093-47195112 Msa0603010:intron 35.0%
! TGAGTTATGGTGTTTAGAGT+TGG - chr4_2:47195106-47195125 Msa0603010:intron 35.0%
! CATTTTGCAGGAAAGAAACT+AGG - chr4_2:47195546-47195565 Msa0603010:three_prime_UTR 35.0%
TAAAATGTTAGTAGCAGCTG+AGG - chr4_2:47195595-47195614 Msa0603010:three_prime_UTR 35.0%
AAAGGAGATCCATATCCTAT+AGG + chr4_2:47195768-47195787 None:intergenic 35.0%
GATAAAGAAAGGAACAAAGG+GGG - chr4_2:47195812-47195831 Msa0603010:intron 35.0%
TTTGTCTTTGAGCACAAGAT+TGG + chr4_2:47196232-47196251 None:intergenic 35.0%
! GCGTAAGATTTTCTGATTTC+AGG - chr4_2:47196252-47196271 Msa0603010:CDS 35.0%
TCGATTATGCAGTGGAAATT+TGG - chr4_2:47196326-47196345 Msa0603010:CDS 35.0%
ATTTGGTCGATGCAACATTA+TGG - chr4_2:47196343-47196362 Msa0603010:CDS 35.0%
TTTGGTCGATGCAACATTAT+GGG - chr4_2:47196344-47196363 Msa0603010:CDS 35.0%
GATGAAGTTTCTTGCTGAAA+AGG - chr4_2:47196386-47196405 Msa0603010:CDS 35.0%
AAGTTTCTTGCTGAAAAGGA+AGG - chr4_2:47196390-47196409 Msa0603010:CDS 35.0%
ACAAACAAAGTGACGAACAA+CGG + chr4_2:47196505-47196524 None:intergenic 35.0%
! TATCAATTTGAAACATCCGG+TGG - chr4_2:47196601-47196620 Msa0603010:CDS 35.0%
! TGCTCTGGATGTTAATTGTT+GGG - chr4_2:47196657-47196676 Msa0603010:CDS 35.0%
GATGTTAATTGTTGGGAAAG+TGG - chr4_2:47196664-47196683 Msa0603010:CDS 35.0%
TAATTGTTGGGAAAGTGGTA+TGG - chr4_2:47196669-47196688 Msa0603010:CDS 35.0%
!! GGTAGATTGTTTGCTATGAA+TGG - chr4_2:47196894-47196913 Msa0603010:intron 35.0%
!! AGATTGTTTGCTATGAATGG+TGG - chr4_2:47196897-47196916 Msa0603010:intron 35.0%
GGTTTCAAATGCAACAAACT+TGG - chr4_2:47196939-47196958 Msa0603010:intron 35.0%
TTCAAATGCAACAAACTTGG+GGG - chr4_2:47196942-47196961 Msa0603010:intron 35.0%
!! GGGTTTGCTCAACTTTATTT+TGG - chr4_2:47196962-47196981 Msa0603010:intron 35.0%
TCAATTTGACAGATGATGCA+TGG + chr4_2:47197213-47197232 None:intergenic 35.0%
TTTCTATGATATGCAGTGTC+AGG - chr4_2:47197248-47197267 Msa0603010:intron 35.0%
TTCTATGATATGCAGTGTCA+GGG - chr4_2:47197249-47197268 Msa0603010:intron 35.0%
TAGCAAGAAAGAATCATCCA+TGG + chr4_2:47197346-47197365 None:intergenic 35.0%
! TAGAAAATCGGGCAATTTTG+AGG - chr4_2:47197364-47197383 Msa0603010:intron 35.0%
! AGAAAATCGGGCAATTTTGA+GGG - chr4_2:47197365-47197384 Msa0603010:intron 35.0%
! AATTTTCTATAGGGCTGAGT+TGG - chr4_2:47197464-47197483 Msa0603010:five_prime_UTR 35.0%
! ATTTTCTATAGGGCTGAGTT+GGG - chr4_2:47197465-47197484 Msa0603010:five_prime_UTR 35.0%
ATGATGAATGCTGATGACTT+AGG + chr4_2:47197553-47197572 None:intergenic 35.0%
AAATGGGTGACATAATACCT+GGG + chr4_2:47197977-47197996 None:intergenic 35.0%
TAAATGGGTGACATAATACC+TGG + chr4_2:47197978-47197997 None:intergenic 35.0%
ATTAAAGAAGAGGCTCTCAA+TGG - chr4_2:47198093-47198112 Msa0603010:intron 35.0%
TTAAAGAAGAGGCTCTCAAT+GGG - chr4_2:47198094-47198113 Msa0603010:intron 35.0%
! GTTCATTGAAAGCATAGATG+GGG + chr4_2:47198151-47198170 None:intergenic 35.0%
AATTGAAGAGTCCTACACTA+TGG + chr4_2:47198492-47198511 None:intergenic 35.0%
! CAATTTGCTTTCCATTGTTC+TGG - chr4_2:47198507-47198526 Msa0603010:intron 35.0%
CATCACCTTCTTCATTATCT+TGG + chr4_2:47198722-47198741 None:intergenic 35.0%
CTACTCCAGAAACTTAATTG+CGG - chr4_2:47198869-47198888 Msa0603010:five_prime_UTR 35.0%
TTGAACCGCAATTAAGTTTC+TGG + chr4_2:47198877-47198896 None:intergenic 35.0%
TGTGAAGATCAATCTGAAGA+AGG - chr4_2:47199003-47199022 Msa0603010:five_prime_UTR 35.0%
TCTTTATCCGTAAACATCTG+CGG + chr4_2:47199043-47199062 None:intergenic 35.0%
TGCATATGTATCATCTGATG+AGG - chr4_2:47199066-47199085 Msa0603010:five_prime_UTR 35.0%
ACTCACAACTCTATAAGAGA+GGG + chr4_2:47199119-47199138 None:intergenic 35.0%
AACTCACAACTCTATAAGAG+AGG + chr4_2:47199120-47199139 None:intergenic 35.0%
GTTCCTGATACCAAGATAAA+AGG - chr4_2:47199372-47199391 Msa0603010:five_prime_UTR 35.0%
! CTTCCTTTTATCTTGGTATC+AGG + chr4_2:47199378-47199397 None:intergenic 35.0%
! TGGAGTTCTTCCTTTTATCT+TGG + chr4_2:47199385-47199404 None:intergenic 35.0%
TCATAATCTTGAAGCCTGAT+TGG + chr4_2:47199465-47199484 None:intergenic 35.0%
GTTTAGCATGCATGATTTAG+TGG - chr4_2:47200088-47200107 Msa0603010:five_prime_UTR 35.0%
CGGTTGTATCTCAGATTATA+AGG - chr4_2:47200257-47200276 Msa0603010:five_prime_UTR 35.0%
GAATTTGGCAGAAACAACTT+TGG + chr4_2:47200296-47200315 None:intergenic 35.0%
TGGAGATTTAGAAGTTGAAG+TGG + chr4_2:47200344-47200363 None:intergenic 35.0%
ATCAGTGATACATTTGACTC+TGG + chr4_2:47200364-47200383 None:intergenic 35.0%
AGAGTCAAATGTATCACTGA+TGG - chr4_2:47200363-47200382 Msa0603010:intron 35.0%
ACAACGCTTTGTAAGATTTG+AGG + chr4_2:47200404-47200423 None:intergenic 35.0%
ACGAAGAAGTCAATTAAGAC+AGG - chr4_2:47200478-47200497 Msa0603010:intron 35.0%
CGAAGAAGTCAATTAAGACA+GGG - chr4_2:47200479-47200498 Msa0603010:intron 35.0%
GAAGAAGTCAATTAAGACAG+GGG - chr4_2:47200480-47200499 Msa0603010:intron 35.0%
ACTTTACATTTATCCCAAGG+AGG + chr4_2:47200580-47200599 None:intergenic 35.0%
!!! TTTTTTCAGCTCGAGACTTA+TGG - chr4_2:47200676-47200695 Msa0603010:five_prime_UTR 35.0%
AAGAAAAGGGAGAGAGAAAC+GGG - chr4_2:47194453-47194472 Msa0603010:three_prime_UTR 40.0%
CGAAAAACTGCGTAAGAGAA+AGG - chr4_2:47194530-47194549 Msa0603010:three_prime_UTR 40.0%
GTAAGAGAAAGGGAAAGTGA+CGG - chr4_2:47194541-47194560 Msa0603010:three_prime_UTR 40.0%
ACAGAACGACGAAATTGATG+GGG - chr4_2:47194635-47194654 Msa0603010:three_prime_UTR 40.0%
ATTGATGGGGAGAAAGGAAA+CGG - chr4_2:47194648-47194667 Msa0603010:three_prime_UTR 40.0%
CTAAACATGCAAGCAGATGA+AGG + chr4_2:47194720-47194739 None:intergenic 40.0%
GTTAATTGAGGTTGCATGTG+TGG - chr4_2:47194871-47194890 Msa0603010:three_prime_UTR 40.0%
AGGTTGCATGTGTGGAAAAT+TGG - chr4_2:47194879-47194898 Msa0603010:three_prime_UTR 40.0%
GGTTGCATGTGTGGAAAATT+GGG - chr4_2:47194880-47194899 Msa0603010:three_prime_UTR 40.0%
! GGTTTAGGGTTCTTGATTCA+TGG - chr4_2:47194901-47194920 Msa0603010:three_prime_UTR 40.0%
TGCAATGGGACAAGTGTAAA+TGG - chr4_2:47194997-47195016 Msa0603010:intron 40.0%
CAATAATGAGGAGATGGTGA+AGG - chr4_2:47195064-47195083 Msa0603010:intron 40.0%
ATGGTGAAGGTGAAGATGAA+AGG - chr4_2:47195077-47195096 Msa0603010:intron 40.0%
! GTTATGGTGTTTAGAGTTGG+TGG - chr4_2:47195109-47195128 Msa0603010:intron 40.0%
!! TGTTTAGAGTTGGTGGTTTC+TGG - chr4_2:47195116-47195135 Msa0603010:intron 40.0%
TCTGGTAACAAGATTAGTGC+AGG - chr4_2:47195134-47195153 Msa0603010:intron 40.0%
AAGATTAGTGCAGGAAGTGA+TGG - chr4_2:47195143-47195162 Msa0603010:intron 40.0%
! GAAGTGATGGAAAAGTTGCT+TGG - chr4_2:47195156-47195175 Msa0603010:intron 40.0%
TTGCTTGGAGATAAACTCCT+TGG - chr4_2:47195171-47195190 Msa0603010:intron 40.0%
AAGAAACGTCTAAGAGGTCT+AGG + chr4_2:47195224-47195243 None:intergenic 40.0%
ACCTCTTAGACGTTTCTTAC+AGG - chr4_2:47195226-47195245 Msa0603010:intron 40.0%
ACCTGTAAGAAACGTCTAAG+AGG + chr4_2:47195230-47195249 None:intergenic 40.0%
! TAGAATTTGATGGCAGCAGT+TGG - chr4_2:47195738-47195757 Msa0603010:intron 40.0%
! AGAATTTGATGGCAGCAGTT+GGG - chr4_2:47195739-47195758 Msa0603010:intron 40.0%
GTTGGGATACCTATAGGATA+TGG - chr4_2:47195756-47195775 Msa0603010:intron 40.0%
CTTGCTTGATGTATCTGTGA+GGG + chr4_2:47195793-47195812 None:intergenic 40.0%
TCTTGCTTGATGTATCTGTG+AGG + chr4_2:47195794-47195813 None:intergenic 40.0%
! TCCTTTAAGGAGATCCAAGA+TGG - chr4_2:47196025-47196044 Msa0603010:intron 40.0%
TCCATCTTGGATCTCCTTAA+AGG + chr4_2:47196029-47196048 None:intergenic 40.0%
!! CCACTTTGAAATCTCCATCT+TGG + chr4_2:47196042-47196061 None:intergenic 40.0%
CCAAGATGGAGATTTCAAAG+TGG - chr4_2:47196039-47196058 Msa0603010:intron 40.0%
AAGTCGACGTTATTTGGATC+TGG - chr4_2:47196192-47196211 Msa0603010:CDS 40.0%
TTGAGCACAAGATTGGTACA+CGG + chr4_2:47196225-47196244 None:intergenic 40.0%
! CAATGTTGTCGATTATGCAG+TGG - chr4_2:47196318-47196337 Msa0603010:CDS 40.0%
TTGCTGAAAAGGAAGGAAAC+AGG - chr4_2:47196397-47196416 Msa0603010:CDS 40.0%
CACCTAATCTTTGCAACAAC+TGG - chr4_2:47196561-47196580 Msa0603010:CDS 40.0%
GACCAGTTGTTGCAAAGATT+AGG + chr4_2:47196566-47196585 None:intergenic 40.0%
AATCTTTGCAACAACTGGTC+CGG - chr4_2:47196566-47196585 Msa0603010:CDS 40.0%
TAGGGCTAGGTAAGTTAACT+TGG - chr4_2:47196634-47196653 Msa0603010:CDS 40.0%
! GTGCTCTGGATGTTAATTGT+TGG - chr4_2:47196656-47196675 Msa0603010:CDS 40.0%
!! GAATGGTGGTTTGTGTTTTC+AGG - chr4_2:47196911-47196930 Msa0603010:intron 40.0%
!!! GGTTTGTGTTTTCAGGTATC+TGG - chr4_2:47196918-47196937 Msa0603010:intron 40.0%
AGAACATATTCCCTGCTGAT+TGG - chr4_2:47197095-47197114 Msa0603010:exon 40.0%
TCTATGATATGCAGTGTCAG+GGG - chr4_2:47197250-47197269 Msa0603010:intron 40.0%
TTTGTCTAGGTTCTTGACCA+TGG - chr4_2:47197326-47197345 Msa0603010:intron 40.0%
CGTAGAATCTCCAAACAAGT+CGG + chr4_2:47197525-47197544 None:intergenic 40.0%
TGAATGCTGATGACTTAGGT+TGG + chr4_2:47197549-47197568 None:intergenic 40.0%
ATCAGCATTCATCATACCAG+AGG - chr4_2:47197558-47197577 Msa0603010:five_prime_UTR 40.0%
AAACCTAGAACTGATGACTG+AGG + chr4_2:47197688-47197707 None:intergenic 40.0%
CATTGCTTACACTGAGTTTC+AGG - chr4_2:47197903-47197922 Msa0603010:intron 40.0%
TTACACTGAGTTTCAGGATG+TGG - chr4_2:47197909-47197928 Msa0603010:intron 40.0%
AATACCTGGGTATCATCAAC+AGG + chr4_2:47197964-47197983 None:intergenic 40.0%
AGATGGGGCAAACACTTATT+CGG + chr4_2:47198136-47198155 None:intergenic 40.0%
ACTTACACATCACCATCAAC+AGG + chr4_2:47198192-47198211 None:intergenic 40.0%
TTGGGATGAGCTTAGCTATA+TGG - chr4_2:47198343-47198362 Msa0603010:intron 40.0%
CTTGTCATTGTCCTCATCAT+CGG + chr4_2:47198571-47198590 None:intergenic 40.0%
GACTTGTCTTTACCTGTAAG+CGG - chr4_2:47198624-47198643 Msa0603010:five_prime_UTR 40.0%
!! CATTATCTTGGAAGCGTTGT+AGG + chr4_2:47198710-47198729 None:intergenic 40.0%
CGCTTCCAAGATAATGAAGA+AGG - chr4_2:47198714-47198733 Msa0603010:intron 40.0%
ATCTGACGATGAAGTTGAAG+AGG - chr4_2:47198907-47198926 Msa0603010:intron 40.0%
TTGATCTTCACAGCATCAGA+TGG + chr4_2:47198995-47199014 None:intergenic 40.0%
CTTTATCCGTAAACATCTGC+GGG + chr4_2:47199042-47199061 None:intergenic 40.0%
ATCATCTGATGAGGAAACTG+AGG - chr4_2:47199075-47199094 Msa0603010:intron 40.0%
TCTATAAGAGAGGGACTGTT+TGG + chr4_2:47199110-47199129 None:intergenic 40.0%
TTCCATCTTTGCATGCACTA+AGG - chr4_2:47199207-47199226 Msa0603010:five_prime_UTR 40.0%
TACCTTAGTGCATGCAAAGA+TGG + chr4_2:47199212-47199231 None:intergenic 40.0%
! GAACGCTCAATTCTTTTCAC+CGG - chr4_2:47199296-47199315 Msa0603010:intron 40.0%
CTGATTGGTGTACATTGCAT+AGG + chr4_2:47199450-47199469 None:intergenic 40.0%
CTATGCAATGTACACCAATC+AGG - chr4_2:47199448-47199467 Msa0603010:five_prime_UTR 40.0%
ATGGCTGCAGCATACAATAA+TGG + chr4_2:47199506-47199525 None:intergenic 40.0%
!!! GTTATGTTTTGGCCAATGTG+TGG + chr4_2:47199539-47199558 None:intergenic 40.0%
ATGCCTTCTTCTCAAAAGCA+TGG - chr4_2:47199822-47199841 Msa0603010:five_prime_UTR 40.0%
!! GATCCATGCTTTTGAGAAGA+AGG + chr4_2:47199828-47199847 None:intergenic 40.0%
! TCAAAAGCATGGATCAAGCA+AGG - chr4_2:47199833-47199852 Msa0603010:five_prime_UTR 40.0%
GTCAGAGGATTCTTCAGATA+CGG - chr4_2:47199914-47199933 Msa0603010:intron 40.0%
GCATGATTTAGTGGAATCTG+TGG - chr4_2:47200097-47200116 Msa0603010:five_prime_UTR 40.0%
CACTGATGGAGATATTAAGC+AGG - chr4_2:47200377-47200396 Msa0603010:intron 40.0%
ACGGGAGAAGAAAGGGAAAA+CGG - chr4_2:47194477-47194496 Msa0603010:three_prime_UTR 45.0%
AAACGGGAAAGGGAGGAAAA+CGG - chr4_2:47194507-47194526 Msa0603010:three_prime_UTR 45.0%
GGGAAAGTGACGGTGAAAAA+CGG - chr4_2:47194551-47194570 Msa0603010:three_prime_UTR 45.0%
AAAGTGACGGTGAAAAACGG+CGG - chr4_2:47194554-47194573 Msa0603010:three_prime_UTR 45.0%
GTGAGGAAGAGTAGGAGAAA+GGG - chr4_2:47194582-47194601 Msa0603010:three_prime_UTR 45.0%
TAGGAGAAAGGGAAAGCGAT+GGG - chr4_2:47194593-47194612 Msa0603010:three_prime_UTR 45.0%
GACGAAATTGATGGGGAGAA+AGG - chr4_2:47194642-47194661 Msa0603010:three_prime_UTR 45.0%
AAAGGAAACGGTGAAGAGCA+AGG - chr4_2:47194660-47194679 Msa0603010:three_prime_UTR 45.0%
AAGGAAACGGTGAAGAGCAA+GGG - chr4_2:47194661-47194680 Msa0603010:three_prime_UTR 45.0%
! CGCGTTTTCTCATCAAAGGT+TGG - chr4_2:47194686-47194705 Msa0603010:three_prime_UTR 45.0%
AAACAGTATGTGGCTGCAGT+GGG - chr4_2:47194938-47194957 Msa0603010:three_prime_UTR 45.0%
! ATGGCAACAGAGTTTTCTGC+AGG - chr4_2:47195016-47195035 Msa0603010:intron 45.0%
! TGGCAACAGAGTTTTCTGCA+GGG - chr4_2:47195017-47195036 Msa0603010:intron 45.0%
! AGAGTTTTCTGCAGGGGAAA+AGG - chr4_2:47195024-47195043 Msa0603010:intron 45.0%
! GAGTTTTCTGCAGGGGAAAA+GGG - chr4_2:47195025-47195044 Msa0603010:intron 45.0%
! AGTTTTCTGCAGGGGAAAAG+GGG - chr4_2:47195026-47195045 Msa0603010:intron 45.0%
GAAGCATGAGAATGATGCCA+AGG + chr4_2:47195191-47195210 None:intergenic 45.0%
TGGCATCATTCTCATGCTTC+TGG - chr4_2:47195191-47195210 Msa0603010:intron 45.0%
CATCATTCTCATGCTTCTGG+TGG - chr4_2:47195194-47195213 Msa0603010:intron 45.0%
AAACGTCTAAGAGGTCTAGG+TGG + chr4_2:47195221-47195240 None:intergenic 45.0%
AGTAGCAGCTGAGGTATGTA+AGG - chr4_2:47195604-47195623 Msa0603010:three_prime_UTR 45.0%
GTAGCAGCTGAGGTATGTAA+GGG - chr4_2:47195605-47195624 Msa0603010:three_prime_UTR 45.0%
TAGCAGCTGAGGTATGTAAG+GGG - chr4_2:47195606-47195625 Msa0603010:three_prime_UTR 45.0%
GATGTATCTGTGAGGGTCAA+AGG + chr4_2:47195786-47195805 None:intergenic 45.0%
TTCACCTGCAATCTTGCACT+GGG + chr4_2:47196449-47196468 None:intergenic 45.0%
ATTCACCTGCAATCTTGCAC+TGG + chr4_2:47196450-47196469 None:intergenic 45.0%
ATCTTTGCAACAACTGGTCC+GGG - chr4_2:47196567-47196586 Msa0603010:CDS 45.0%
!! GGTAAGTTAACTTGGTGCTC+TGG - chr4_2:47196642-47196661 Msa0603010:CDS 45.0%
TTAGAACAGTCGACGCAGAT+TGG - chr4_2:47196781-47196800 Msa0603010:intron 45.0%
GGAATCAGAACCAATCAGCA+GGG + chr4_2:47197108-47197127 None:intergenic 45.0%
TGGAATCAGAACCAATCAGC+AGG + chr4_2:47197109-47197128 None:intergenic 45.0%
!! TGTGATCGAACCGACTTGTT+TGG - chr4_2:47197512-47197531 Msa0603010:five_prime_UTR 45.0%
GAACCTCAGTCATCAGTTCT+AGG - chr4_2:47197682-47197701 Msa0603010:five_prime_UTR 45.0%
ATTAAGGCTCACCTTCATCC+TGG - chr4_2:47197736-47197755 Msa0603010:five_prime_UTR 45.0%
CTTCCTCTTAAGATCACCTC+TGG + chr4_2:47197772-47197791 None:intergenic 45.0%
CTTGATTCTGCTCCTGTTGA+TGG - chr4_2:47198177-47198196 Msa0603010:intron 45.0%
GCTAAGCTCATCCCAAAGTA+AGG + chr4_2:47198339-47198358 None:intergenic 45.0%
! GACAACCAATCCTTTTCTCC+AGG - chr4_2:47198541-47198560 Msa0603010:intron 45.0%
GAAGACCTGGAGAAAAGGAT+TGG + chr4_2:47198549-47198568 None:intergenic 45.0%
CGATGATGAGGACAATGACA+AGG - chr4_2:47198569-47198588 Msa0603010:intron 45.0%
AACACAGTGCCACACTTACA+TGG - chr4_2:47198594-47198613 Msa0603010:intron 45.0%
TCAGCTGATCCATGTAAGTG+TGG + chr4_2:47198606-47198625 None:intergenic 45.0%
CATCGACAAAAGCCTTGACA+GGG + chr4_2:47198653-47198672 None:intergenic 45.0%
TCATCGACAAAAGCCTTGAC+AGG + chr4_2:47198654-47198673 None:intergenic 45.0%
GTCACTGTCATCTTCCTCTT+CGG + chr4_2:47198682-47198701 None:intergenic 45.0%
AAGACCAACTCCATCAGCAA+TGG - chr4_2:47198813-47198832 Msa0603010:five_prime_UTR 45.0%
TTGAGCAGCAGGATACAACT+GGG - chr4_2:47198837-47198856 Msa0603010:five_prime_UTR 45.0%
TGAAGTTGAAGAGGAAGACG+AGG - chr4_2:47198916-47198935 Msa0603010:intron 45.0%
GATGATCCCGCAGATGTTTA+CGG - chr4_2:47199033-47199052 Msa0603010:five_prime_UTR 45.0%
!!! GCTGTCACTTTGATTTTGGC+AGG - chr4_2:47199171-47199190 Msa0603010:intron 45.0%
!! GGATAAAGGAGCACTTCATC+AGG + chr4_2:47199612-47199631 None:intergenic 45.0%
!! ACCTTCAGTGTTGATGTCAG+AGG - chr4_2:47199899-47199918 Msa0603010:intron 45.0%
TCCTCTGACATCAACACTGA+AGG + chr4_2:47199903-47199922 None:intergenic 45.0%
TCTACTGTCATACTCACTCC+TGG - chr4_2:47200224-47200243 Msa0603010:five_prime_UTR 45.0%
TCACTCCTGGTTTCTCTGTT+CGG - chr4_2:47200237-47200256 Msa0603010:five_prime_UTR 45.0%
TACAACCGAACAGAGAAACC+AGG + chr4_2:47200245-47200264 None:intergenic 45.0%
!! AATCGGTTTTTGGACCTCCA+TGG - chr4_2:47200538-47200557 Msa0603010:intron 45.0%
!! ATCGGTTTTTGGACCTCCAT+GGG - chr4_2:47200539-47200558 Msa0603010:intron 45.0%
!! ATCGGTTTTTGGACCTCCTT+GGG - chr4_2:47200564-47200583 Msa0603010:five_prime_UTR 45.0%
!! ATATGAAAAATATTAATAAT+TGG + chr4_2:47197129-47197148 None:intergenic 5.0%
AAGGGAGAGAGAAACGGGAA+CGG - chr4_2:47194458-47194477 Msa0603010:three_prime_UTR 50.0%
AAACGGGAACGGGAGAAGAA+AGG - chr4_2:47194469-47194488 Msa0603010:three_prime_UTR 50.0%
AACGGGAACGGGAGAAGAAA+GGG - chr4_2:47194470-47194489 Msa0603010:three_prime_UTR 50.0%
GGAGAAGAAAGGGAAAACGG+CGG - chr4_2:47194480-47194499 Msa0603010:three_prime_UTR 50.0%
GGGAAAACGGCGGTGAAAAA+CGG - chr4_2:47194490-47194509 Msa0603010:three_prime_UTR 50.0%
GGAAAACGGCGGTGAAAAAC+GGG - chr4_2:47194491-47194510 Msa0603010:three_prime_UTR 50.0%
GGTGAGGAAGAGTAGGAGAA+AGG - chr4_2:47194581-47194600 Msa0603010:three_prime_UTR 50.0%
GTAGGAGAAAGGGAAAGCGA+TGG - chr4_2:47194592-47194611 Msa0603010:three_prime_UTR 50.0%
AGGAGAAAGGGAAAGCGATG+GGG - chr4_2:47194594-47194613 Msa0603010:three_prime_UTR 50.0%
AGGAAACGGTGAAGAGCAAG+GGG - chr4_2:47194662-47194681 Msa0603010:three_prime_UTR 50.0%
! GGGTCGCGTTTTCTCATCAA+AGG - chr4_2:47194682-47194701 Msa0603010:three_prime_UTR 50.0%
GAAACAGTATGTGGCTGCAG+TGG - chr4_2:47194937-47194956 Msa0603010:three_prime_UTR 50.0%
! GGCAACAGAGTTTTCTGCAG+GGG - chr4_2:47195018-47195037 Msa0603010:intron 50.0%
GCAGCAGTTGGGATACCTAT+AGG - chr4_2:47195750-47195769 Msa0603010:intron 50.0%
CGAACACGGTCAAGAATTGC+TGG + chr4_2:47195841-47195860 None:intergenic 50.0%
ATTCTTGACCGTGTTCGCGA+TGG - chr4_2:47195844-47195863 Msa0603010:intron 50.0%
TCAACACTCCATCGCGAACA+CGG + chr4_2:47195855-47195874 None:intergenic 50.0%
TGAAACATCCGGTGGTTGAG+AGG - chr4_2:47196609-47196628 Msa0603010:CDS 50.0%
ATCCGGTGGTTGAGAGGTTT+AGG - chr4_2:47196615-47196634 Msa0603010:CDS 50.0%
TCCGGTGGTTGAGAGGTTTA+GGG - chr4_2:47196616-47196635 Msa0603010:CDS 50.0%
! TGGTTGAGAGGTTTAGGGCT+AGG - chr4_2:47196621-47196640 Msa0603010:CDS 50.0%
TCACCTTCATCCTGGTGGAA+TGG - chr4_2:47197744-47197763 Msa0603010:five_prime_UTR 50.0%
GAGCCAGAGGTGATCTTAAG+AGG - chr4_2:47197766-47197785 Msa0603010:intron 50.0%
!! AGCTCCTGTTGATGATACCC+AGG - chr4_2:47197957-47197976 Msa0603010:intron 50.0%
CATCGGAAGACCTGGAGAAA+AGG + chr4_2:47198554-47198573 None:intergenic 50.0%
TGTCGATGAAGAAGCCGAAG+AGG - chr4_2:47198665-47198684 Msa0603010:five_prime_UTR 50.0%
CAAGCCATTGCTGATGGAGT+TGG + chr4_2:47198820-47198839 None:intergenic 50.0%
CTTGAGCAGCAGGATACAAC+TGG - chr4_2:47198836-47198855 Msa0603010:five_prime_UTR 50.0%
CTGATGAGGAAACTGAGGAG+TGG - chr4_2:47199080-47199099 Msa0603010:intron 50.0%
!! CTGCTGCTTTCATCTTCAGC+CGG + chr4_2:47199318-47199337 None:intergenic 50.0%
GGCTGAAGATGAAAGCAGCA+GGG - chr4_2:47199317-47199336 Msa0603010:intron 50.0%
GCTGAAGATGAAAGCAGCAG+GGG - chr4_2:47199318-47199337 Msa0603010:intron 50.0%
TTTGGACCTCCATGGGACAT+CGG - chr4_2:47200546-47200565 Msa0603010:intron 50.0%
CAAAAACCGATGTCCCATGG+AGG + chr4_2:47200555-47200574 None:intergenic 50.0%
!!! CTCCATGGGACATCGGTTTT+TGG - chr4_2:47200553-47200572 Msa0603010:five_prime_UTR 50.0%
GTCCAAAAACCGATGTCCCA+TGG + chr4_2:47200558-47200577 None:intergenic 50.0%
!!! CATCGGTTTTTGGACCTCCT+TGG - chr4_2:47200563-47200582 Msa0603010:five_prime_UTR 50.0%
AGGGAGAGAGAAACGGGAAC+GGG - chr4_2:47194459-47194478 Msa0603010:three_prime_UTR 55.0%
ACGGCGGTGAAAAACGGGAA+AGG - chr4_2:47194496-47194515 Msa0603010:three_prime_UTR 55.0%
CGGCGGTGAAAAACGGGAAA+GGG - chr4_2:47194497-47194516 Msa0603010:three_prime_UTR 55.0%
CGGTGAAAAACGGGAAAGGG+AGG - chr4_2:47194500-47194519 Msa0603010:three_prime_UTR 55.0%
GGAGAAAGGGAAAGCGATGG+GGG - chr4_2:47194595-47194614 Msa0603010:three_prime_UTR 55.0%
!! GTGTTCGCGATGGAGTGTTG+AGG - chr4_2:47195854-47195873 Msa0603010:CDS 55.0%
CATGCCCAGTGCAAGATTGC+AGG - chr4_2:47196442-47196461 Msa0603010:intron 55.0%
GCCCTAAACCTCTCAACCAC+CGG + chr4_2:47196620-47196639 None:intergenic 55.0%
AAGGCTCACCTTCATCCTGG+TGG - chr4_2:47197739-47197758 Msa0603010:five_prime_UTR 55.0%
GCTCCATTCCACCAGGATGA+AGG + chr4_2:47197750-47197769 None:intergenic 55.0%
CTCCAGGTCTTCCGATGATG+AGG - chr4_2:47198557-47198576 Msa0603010:intron 55.0%
GTCCTCATCATCGGAAGACC+TGG + chr4_2:47198562-47198581 None:intergenic 55.0%
TTGACAGGGTCACCGCTTAC+AGG + chr4_2:47198639-47198658 None:intergenic 55.0%
TGTAAGCGGTGACCCTGTCA+AGG - chr4_2:47198638-47198657 Msa0603010:five_prime_UTR 55.0%
GCTGCTCAAGCCATTGCTGA+TGG + chr4_2:47198826-47198845 None:intergenic 55.0%
TCAGCAATGGCTTGAGCAGC+AGG - chr4_2:47198826-47198845 Msa0603010:five_prime_UTR 55.0%
GCAGCAGGATACAACTGGGA+TGG - chr4_2:47198841-47198860 Msa0603010:five_prime_UTR 55.0%
CGGCTGAAGATGAAAGCAGC+AGG - chr4_2:47199316-47199335 Msa0603010:intron 55.0%
ACGGTGAAAAACGGCGGCGT+CGG - chr4_2:47194560-47194579 Msa0603010:three_prime_UTR 60.0%
GAAAGGGAAAGCGATGGGGG+AGG - chr4_2:47194598-47194617 Msa0603010:three_prime_UTR 60.0%
CAGTATGTGGCTGCAGTGGG+AGG - chr4_2:47194941-47194960 Msa0603010:three_prime_UTR 60.0%
TCCTGGTGGAATGGAGCCAG+AGG - chr4_2:47197753-47197772 Msa0603010:five_prime_UTR 60.0%
! ACCTCTGGCTCCATTCCACC+AGG + chr4_2:47197757-47197776 None:intergenic 60.0%
!! GAAAAACGGCGGCGTCGGTG+AGG - chr4_2:47194565-47194584 Msa0603010:three_prime_UTR 65.0%
!! CGGCGTCGGTGAGGAAGAGT+AGG - chr4_2:47194574-47194593 Msa0603010:three_prime_UTR 65.0%
GGGAAAGCGATGGGGGAGGT+TGG - chr4_2:47194602-47194621 Msa0603010:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 47194450 47200803 47194450 ID=Msa0603010;Name=Msa0603010
chr4_2 mRNA 47194450 47200803 47194450 ID=Msa0603010-mRNA-1;Parent=Msa0603010;Name=Msa0603010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=1876|0.94|0.89|1|0.44|0.36|19|855|248
chr4_2 exon 47194450 47194982 47194450 ID=Msa0603010-mRNA-1:exon:10802;Parent=Msa0603010-mRNA-1
chr4_2 exon 47195318 47195731 47195318 ID=Msa0603010-mRNA-1:exon:10801;Parent=Msa0603010-mRNA-1
chr4_2 exon 47195848 47195962 47195848 ID=Msa0603010-mRNA-1:exon:10800;Parent=Msa0603010-mRNA-1
chr4_2 exon 47196121 47196437 47196121 ID=Msa0603010-mRNA-1:exon:10799;Parent=Msa0603010-mRNA-1
chr4_2 exon 47196518 47196690 47196518 ID=Msa0603010-mRNA-1:exon:10798;Parent=Msa0603010-mRNA-1
chr4_2 exon 47197048 47197190 47197048 ID=Msa0603010-mRNA-1:exon:10797;Parent=Msa0603010-mRNA-1
chr4_2 exon 47197275 47197328 47197275 ID=Msa0603010-mRNA-1:exon:10796;Parent=Msa0603010-mRNA-1
chr4_2 exon 47197406 47197777 47197406 ID=Msa0603010-mRNA-1:exon:10795;Parent=Msa0603010-mRNA-1
chr4_2 exon 47197862 47197918 47197862 ID=Msa0603010-mRNA-1:exon:10794;Parent=Msa0603010-mRNA-1
chr4_2 exon 47198240 47198320 47198240 ID=Msa0603010-mRNA-1:exon:10793;Parent=Msa0603010-mRNA-1
chr4_2 exon 47198611 47198701 47198611 ID=Msa0603010-mRNA-1:exon:10792;Parent=Msa0603010-mRNA-1
chr4_2 exon 47198790 47198915 47198790 ID=Msa0603010-mRNA-1:exon:10791;Parent=Msa0603010-mRNA-1
chr4_2 exon 47199000 47199090 47199000 ID=Msa0603010-mRNA-1:exon:10790;Parent=Msa0603010-mRNA-1
chr4_2 exon 47199180 47199228 47199180 ID=Msa0603010-mRNA-1:exon:10789;Parent=Msa0603010-mRNA-1
chr4_2 exon 47199337 47199512 47199337 ID=Msa0603010-mRNA-1:exon:10788;Parent=Msa0603010-mRNA-1
chr4_2 exon 47199637 47199697 47199637 ID=Msa0603010-mRNA-1:exon:10787;Parent=Msa0603010-mRNA-1
chr4_2 exon 47199792 47199871 47199792 ID=Msa0603010-mRNA-1:exon:10786;Parent=Msa0603010-mRNA-1
chr4_2 exon 47200006 47200296 47200006 ID=Msa0603010-mRNA-1:exon:10785;Parent=Msa0603010-mRNA-1
chr4_2 exon 47200550 47200803 47200550 ID=Msa0603010-mRNA-1:exon:10784;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47200550 47200803 47200550 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47200006 47200296 47200006 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47199792 47199871 47199792 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47199637 47199697 47199637 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47199337 47199512 47199337 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47199180 47199228 47199180 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47199000 47199090 47199000 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47198790 47198915 47198790 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47198611 47198701 47198611 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47198240 47198320 47198240 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47197862 47197918 47197862 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47197406 47197777 47197406 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47197275 47197328 47197275 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 five_prime_UTR 47197098 47197190 47197098 ID=Msa0603010-mRNA-1:five_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 CDS 47197048 47197097 47197048 ID=Msa0603010-mRNA-1:cds;Parent=Msa0603010-mRNA-1
chr4_2 CDS 47196518 47196690 47196518 ID=Msa0603010-mRNA-1:cds;Parent=Msa0603010-mRNA-1
chr4_2 CDS 47196121 47196437 47196121 ID=Msa0603010-mRNA-1:cds;Parent=Msa0603010-mRNA-1
chr4_2 CDS 47195848 47195962 47195848 ID=Msa0603010-mRNA-1:cds;Parent=Msa0603010-mRNA-1
chr4_2 CDS 47195640 47195731 47195640 ID=Msa0603010-mRNA-1:cds;Parent=Msa0603010-mRNA-1
chr4_2 three_prime_UTR 47195318 47195639 47195318 ID=Msa0603010-mRNA-1:three_prime_utr;Parent=Msa0603010-mRNA-1
chr4_2 three_prime_UTR 47194450 47194982 47194450 ID=Msa0603010-mRNA-1:three_prime_utr;Parent=Msa0603010-mRNA-1
Gene Sequence

>Msa0603010

ATGCTTTCAATGAACTTGAAACTTGATTCTGCTCCTGTTGATGGTGATGTGTCTTCCGATGATGAGGACAATGACAAGGAGAACACAGTGCCACACTTACATGGATCAGCTGACTTGTCTTTACCTGTAAGCGGTGACCCTGTCAAGGCTTTTGTCGATGAAGAAGCCGAAGAGGAAGATGACAGTGACAATGACCTACAACGCTTCCAAGATAATGAAGAAGACCAACTCCATCAGCAATGGCTTGAGCAGCAGGATACAACTGGGATGGATAATCTACTCCAGAAACTTAATTGCGGTTCAAGATTGAAAGAATCTGACGATGAAGTTGAAGAGGAAGACGAGGAAAGCAAAGAAACTGAAAATGAATCTGACGATGAAGTTGAAGACTTCACTGCTCCATCTGATGCTGTGAAGATCAATCTGAAGAAGGCGAAGCAGATGATCCCGCAGATGTTTACGGATAAAGATGATGCATATGTATCATCTGATGAGGAAACTGAGGAGTGGCTAGCCAAACAGTCCCTCTCTTATAGAGTTGAGAAGAACGCTCAATTCTTTTCACCGGCTGAAGATGAAAGCAGCAGGGGAGTTTTCAATCTCATAAAGAAATTAAATGTTGTTCCTGATACCAAGATAAAAGGAAGAACTCCATCCATATTTGATATGCCACACATTGGCCAAAACATAACTAAATCATCAAAGATAGGTTACTTTGAACTGCTAGAACATAGCTATTTTACCTGA
Protein sequence

>Msa0603010

MLSMNLKLDSAPVDGDVSSDDEDNDKENTVPHLHGSADLSLPVSGDPVKAFVDEEAEEEDDSDNDLQRFQDNEEDQLHQQWLEQQDTTGMDNLLQKLNCGSRLKESDDEVEEEDEESKETENESDDEVEDFTAPSDAVKINLKKAKQMIPQMFTDKDDAYVSSDEETEEWLAKQSLSYRVEKNAQFFSPAEDESSRGVFNLIKKLNVVPDTKIKGRTPSIFDMPHIGQNITKSSKIGYFELLEHSYFT*