AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927500 MtrunA17_Chr3g0141461 95.050 101 5 0 1 101 342 442 7.81e-35 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 171 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTGAGGAGTTTAAATT+TGG 0.103062 6_2:+71867368 None:intergenic
TTGAACCGCAATTAAGTTTC+TGG 0.119108 6_2:+71868341 None:intergenic
ATTCCGATTTAAGTCCTTTA+AGG 0.140672 6_2:-71871203 Msa0927500:intron
GGGTTTGCTCAACTTTATTT+TGG 0.176166 6_2:-71870253 Msa0927500:five_prime_UTR
AGATGAATTGCGGAATAAAT+TGG 0.222592 6_2:-71867642 Msa0927500:three_prime_UTR
ATAGTAAAGTCGACGTTATT+TGG 0.223314 6_2:-71871029 Msa0927500:five_prime_UTR
GTATATGGGTTGTGACATTA+AGG 0.234993 6_2:+71867538 None:intergenic
AATTGAAATCCATTGGTTAT+AGG 0.240760 6_2:-71869615 Msa0927500:five_prime_UTR
ATTTGGTCGATGCAACATTA+TGG 0.242218 6_2:-71870872 Msa0927500:five_prime_UTR
TCCATCTTGGATCTCCTTAA+AGG 0.242923 6_2:+71871189 Msa0927510:five_prime_UTR
GAACCTCAGTCATCAGTTCT+AGG 0.254865 6_2:-71869533 Msa0927500:five_prime_UTR
ATCCGGTGGTTGAGAGGTTT+AGG 0.288162 6_2:-71870600 Msa0927500:five_prime_UTR
CTTGATTCTGCTCCTGTTGA+TGG 0.294514 6_2:-71869038 Msa0927500:CDS
GTTCCTGATACCAAGATAAA+AGG 0.297250 6_2:-71867843 Msa0927500:three_prime_UTR
CATCACCTTCTTCATTATCT+TGG 0.303254 6_2:+71868496 None:intergenic
CATTATCTTGGAAGCGTTGT+AGG 0.308701 6_2:+71868508 None:intergenic
ATTCTTTCTTGCTAGAAAAT+CGG 0.324655 6_2:-71869863 Msa0927500:five_prime_UTR
TCGATTATGCAGTGGAAATT+TGG 0.333443 6_2:-71870889 Msa0927500:intron
GTTACCTAGGAACAGTATTC+CGG 0.341087 6_2:-71867305 None:intergenic
AAGTTCATTGAAAGCATAGA+TGG 0.344830 6_2:+71869065 None:intergenic
GATGAAGTTTCTTGCTGAAA+AGG 0.356076 6_2:-71870829 Msa0927500:five_prime_UTR
GATGATCCCGCAGATGTTTA+CGG 0.359304 6_2:-71868182 Msa0927500:three_prime_UTR
TGCTGTGATTGAGAAAATTA+AGG 0.360634 6_2:-71869495 Msa0927500:five_prime_UTR
TGTGATCGAACCGACTTGTT+TGG 0.366425 6_2:-71869703 Msa0927500:five_prime_UTR
TTATATACATACTATTTGTT+TGG 0.372103 6_2:+71867330 None:intergenic
GGTTTCAAATGCAACAAACT+TGG 0.375630 6_2:-71870276 Msa0927500:five_prime_UTR
GTCACTGTCATCTTCCTCTT+CGG 0.375822 6_2:+71868536 None:intergenic
TTTGGTCGATGCAACATTAT+GGG 0.378967 6_2:-71870871 Msa0927500:five_prime_UTR
TTGACAGGGTCACCGCTTGC+AGG 0.380630 6_2:+71868579 None:intergenic
TCCGGTGGTTGAGAGGTTTA+GGG 0.382872 6_2:-71870599 Msa0927500:five_prime_UTR
GTTGGGATACCTATAGGATA+TGG 0.388445 6_2:-71871459 Msa0927500:five_prime_UTR
CACCTAATCTTTGCAACAAC+TGG 0.391466 6_2:-71870654 Msa0927500:five_prime_UTR
TTTCTATGATATGCAGTGTC+AGG 0.394397 6_2:-71869967 Msa0927500:five_prime_UTR
TTCTTTCTTGCTAGAAAATC+GGG 0.399754 6_2:-71869862 Msa0927500:five_prime_UTR
TCTATAAGAGAGGGACTGTT+TGG 0.404011 6_2:+71868108 None:intergenic
CTTGAGCAGCAGGATACAAC+TGG 0.406510 6_2:-71868379 Msa0927500:CDS
CATGCCCAGTGCAAGATTGC+AGG 0.415754 6_2:-71870773 Msa0927500:intron
CTGTCAAATTGAATTTGATT+CGG 0.416817 6_2:-71869994 Msa0927500:five_prime_UTR
CTTAATGATATGATAACAAC+TGG 0.419392 6_2:-71868453 Msa0927500:CDS
TTTGTCTTTGAGCACAAGAT+TGG 0.421142 6_2:+71870986 None:intergenic
GTTTATCAATTTGAAACATC+CGG 0.422520 6_2:-71870617 Msa0927500:five_prime_UTR
AAGTCGACGTTATTTGGATC+TGG 0.425700 6_2:-71871023 Msa0927500:five_prime_UTR
CCACTTTGAAATCTCCATCT+TGG 0.426248 6_2:+71871176 Msa0927510:five_prime_UTR
AAGATAAAGAAAGGAACAAA+GGG 0.428594 6_2:-71871405 Msa0927500:five_prime_UTR
AGAACATATTCCCTGCTGAT+TGG 0.432456 6_2:-71870120 Msa0927500:five_prime_UTR
TCAGCAATGGCTTGAGCAGC+AGG 0.435184 6_2:-71868389 Msa0927500:CDS
GTTTCAAATGCAACAAACTT+GGG 0.437289 6_2:-71870275 Msa0927500:five_prime_UTR
TAATTAGTATAGTACTATAT+AGG 0.439319 6_2:-71871816 Msa0927500:five_prime_UTR
TTGCTGAAAAGGAAGGAAAC+AGG 0.440746 6_2:-71870818 Msa0927500:five_prime_UTR
AGATGGGGCAAACACTTATT+CGG 0.441854 6_2:+71869082 None:intergenic
CTTATTCAACTTCCCATTGA+GGG 0.450679 6_2:+71869109 None:intergenic
AATCTTTGCAACAACTGGTC+CGG 0.453619 6_2:-71870649 Msa0927500:five_prime_UTR
ACAAAAGCATTAAATTCCAT+TGG 0.456399 6_2:-71867581 Msa0927500:three_prime_UTR
AAAGGAGATCCATATCCTAT+AGG 0.461389 6_2:+71871450 Msa0927510:five_prime_UTR
GAGCCAGAGGTGATCTTAAG+AGG 0.462766 6_2:-71869449 Msa0927500:five_prime_UTR
TTACCTAGGAACAGTATTCC+GGG 0.465080 6_2:-71867304 None:intergenic
TCATCGACAAAAGCCTTGAC+AGG 0.469980 6_2:+71868564 None:intergenic
ATTATTCAATTGAAATCCAT+TGG 0.470369 6_2:-71869622 Msa0927500:five_prime_UTR
CGGCTGAAGATGAAAGCAGC+AGG 0.472410 6_2:-71867899 Msa0927500:three_prime_UTR
GCAGCAGTTGGGATACCTAT+AGG 0.472722 6_2:-71871465 Msa0927500:five_prime_UTR
TCATTGAGGAGTTTAAATTT+GGG 0.473386 6_2:+71867369 None:intergenic
CTGCTGCTTTCATCTTCAGC+CGG 0.477500 6_2:+71867900 None:intergenic
TGAGTTAATATCAACACAAC+AGG 0.477976 6_2:+71870794 None:intergenic
ACTTACACATCACCATCAAC+AGG 0.478005 6_2:+71869026 None:intergenic
ATTAAGGAATATTACACAAA+AGG 0.479682 6_2:-71867683 Msa0927500:three_prime_UTR
TATATGGGTTGTGACATTAA+GGG 0.480833 6_2:+71867539 None:intergenic
GCTGCTCAAGCCATTGCTGA+TGG 0.482598 6_2:+71868392 None:intergenic
AATACCTGGGTATCATCAAC+AGG 0.482930 6_2:+71869254 None:intergenic
TGGTTGAGAGGTTTAGGGCT+AGG 0.484130 6_2:-71870594 Msa0927500:intron
ATCTTTGCAACAACTGGTCC+GGG 0.487492 6_2:-71870648 Msa0927500:five_prime_UTR
ATTAAAGAAGAGGCCCTCAA+TGG 0.488027 6_2:-71869122 Msa0927500:five_prime_UTR
ATTCACCTGCAATCTTGCAC+TGG 0.488140 6_2:+71870768 None:intergenic
TAGAATTTGATGGCAGCAGT+TGG 0.491226 6_2:-71871477 Msa0927500:five_prime_UTR
AACACAGTGCCACACTTACA+TGG 0.491229 6_2:-71868621 Msa0927500:CDS
CAAGCCATTGCTGATGGAGT+TGG 0.500045 6_2:+71868398 None:intergenic
CGAACACGGTCAAGAATTGC+TGG 0.500753 6_2:+71871377 Msa0927510:five_prime_UTR
TGGAATCAGAACCAATCAGC+AGG 0.501196 6_2:+71870109 None:intergenic
GAGTTCAACTAAATTCTCAA+TGG 0.504073 6_2:+71869423 None:intergenic
CTTGTCATTGTCCTCATCAT+CGG 0.507226 6_2:+71868647 None:intergenic
GATGTATCTGTGAGGGTCAA+AGG 0.507460 6_2:+71871432 Msa0927510:five_prime_UTR
TTAAAGAAGAGGCCCTCAAT+GGG 0.508936 6_2:-71869121 Msa0927500:five_prime_UTR
TTCTATGATATGCAGTGTCA+GGG 0.509318 6_2:-71869966 Msa0927500:five_prime_UTR
TCCCTCATCTTCTTATCCAA+TGG 0.509966 6_2:+71867565 None:intergenic
TAATAAAGCACAATTTCCTC+TGG 0.513963 6_2:+71869641 None:intergenic
GACCAGTTGTTGCAAAGATT+AGG 0.514745 6_2:+71870652 None:intergenic
CTTCCTCTTAAGATCACCTC+TGG 0.514845 6_2:+71869446 None:intergenic
AATTGACATTTCATTGCTTG+TGG 0.514900 6_2:-71870223 Msa0927500:five_prime_UTR
CAAGATAAAGAAAGGAACAA+AGG 0.518432 6_2:-71871406 Msa0927500:five_prime_UTR
ATACAAAATTATTAGCAAGT+TGG 0.519118 6_2:-71867519 Msa0927500:three_prime_UTR
ATTCTTGACCGTGTTCGCGA+TGG 0.519390 6_2:-71871371 Msa0927500:five_prime_UTR
CTCCAGGTCTTCCGATGATG+AGG 0.523194 6_2:-71868658 Msa0927500:intron
CTTTATCCGTAAACATCTGC+GGG 0.523224 6_2:+71868176 None:intergenic
GCTCCATTCCACCAGGATGA+AGG 0.523667 6_2:+71869468 None:intergenic
AGAATTTGATGGCAGCAGTT+GGG 0.524314 6_2:-71871476 Msa0927500:five_prime_UTR
ATCTGACGATGAAGTTGAAG+AGG 0.529423 6_2:-71868308 Msa0927500:three_prime_UTR
CGCTTCCAAGATAATGAAGA+AGG 0.530519 6_2:-71868501 Msa0927500:CDS
TCAATTTGACAGATGATGCA+TGG 0.535276 6_2:+71870005 None:intergenic
ACATCAAGCAAGATAAAGAA+AGG 0.535370 6_2:-71871414 Msa0927500:five_prime_UTR
TTTGTCTAGGTTCTTGACCA+TGG 0.538415 6_2:-71869889 Msa0927500:five_prime_UTR
GCTTATTCAACTTCCCATTG+AGG 0.539326 6_2:+71869108 None:intergenic
TCACCTTCATCCTGGTGGAA+TGG 0.544091 6_2:-71869471 Msa0927500:five_prime_UTR
TCCTTTAAGGAGATCCAAGA+TGG 0.544360 6_2:-71871190 Msa0927500:five_prime_UTR
TAAAATTAACAGATCTTACA+TGG 0.547577 6_2:+71867813 None:intergenic
ACCTCTGGCTCCATTCCACC+AGG 0.550691 6_2:+71869461 None:intergenic
AATAAATGATATTAAAGAAG+AGG 0.553156 6_2:-71869132 Msa0927500:five_prime_UTR
GCCCTAAACCTCTCAACCAC+CGG 0.553362 6_2:+71870598 None:intergenic
TTTCAAATGCAACAAACTTG+GGG 0.558483 6_2:-71870274 Msa0927500:five_prime_UTR
TGCCCCGGAATACTGTTCCT+AGG 0.559620 6_2:+71867301 None:intergenic
TTGATCTTCACAGCATCAGA+TGG 0.562695 6_2:+71868223 None:intergenic
TATTAAACGCCTATAACCAA+TGG 0.565730 6_2:+71869606 None:intergenic
AAGTTTCTTGCTGAAAAGGA+AGG 0.565946 6_2:-71870825 Msa0927500:five_prime_UTR
AGTTCATTGAAAGCATAGAT+GGG 0.567377 6_2:+71869066 None:intergenic
TGAAACATCCGGTGGTTGAG+AGG 0.570553 6_2:-71870606 Msa0927500:five_prime_UTR
CTTGCTTGATGTATCTGTGA+GGG 0.571405 6_2:+71871425 Msa0927510:five_prime_UTR
ATTAAGGCTCACCTTCATCC+TGG 0.572237 6_2:-71869479 Msa0927500:five_prime_UTR
TTTATAACTAATGCTTCGCA+CGG 0.580654 6_2:-71867756 Msa0927500:three_prime_UTR
TTCCATTGGATAAGAAGATG+AGG 0.581516 6_2:-71867567 Msa0927500:three_prime_UTR
TGCAAGCGGTGACCCTGTCA+AGG 0.589300 6_2:-71868577 Msa0927500:CDS
TTAGTATAGTACTATATAGG+TGG 0.591398 6_2:-71871813 Msa0927500:five_prime_UTR
AACTCACAACTCTATAAGAG+AGG 0.593686 6_2:+71868098 None:intergenic
TCCATTGGATAAGAAGATGA+GGG 0.594434 6_2:-71867566 Msa0927500:three_prime_UTR
TTGAGGAGTTTAAATTTGGG+AGG 0.594483 6_2:+71867372 None:intergenic
TTCAAGTGATCGACAACACT+AGG 0.596132 6_2:+71867408 None:intergenic
ATTATGGGACAAATATTCTG+TGG 0.596146 6_2:-71870856 Msa0927500:five_prime_UTR
GACTTGTCTTTACCTGCAAG+CGG 0.597345 6_2:-71868591 Msa0927500:CDS
TGTGAAGATCAATCTGAAGA+AGG 0.597643 6_2:-71868212 Msa0927500:three_prime_UTR
CATGGCATAATTTAGAACAG+TGG 0.598062 6_2:-71871853 None:intergenic
TATGTATATAAACGTTACCT+AGG 0.599604 6_2:-71867318 Msa0927500:three_prime_UTR
TTCACCTGCAATCTTGCACT+GGG 0.600210 6_2:+71870769 None:intergenic
TGTCGATGAAGAAGCCGAAG+AGG 0.600579 6_2:-71868550 Msa0927500:CDS
GCAGCAGGATACAACTGGGA+TGG 0.605675 6_2:-71868374 Msa0927500:CDS
ATGATGAATGCTGATGACTT+AGG 0.609577 6_2:+71869665 None:intergenic
AGCTCCTGTTGATGATACCC+AGG 0.611990 6_2:-71869258 Msa0927500:intron
ATAATAATTAAGATGAATTG+CGG 0.612992 6_2:-71867652 Msa0927500:three_prime_UTR
TCCTGGTGGAATGGAGCCAG+AGG 0.614695 6_2:-71869462 Msa0927500:five_prime_UTR
TAAAATGTTAGTAGCAGCTG+AGG 0.618436 6_2:-71871620 Msa0927500:intron
CGATGATGAGGACAATGACA+AGG 0.619728 6_2:-71868646 Msa0927500:CDS
TTATAACTAATGCTTCGCAC+GGG 0.619878 6_2:-71867755 Msa0927500:three_prime_UTR
TCAACACTCCATCGCGAACA+CGG 0.621130 6_2:+71871363 Msa0927510:five_prime_UTR
AAGACCAACTCCATCAGCAA+TGG 0.627189 6_2:-71868402 Msa0927500:CDS
ATTGATAAACAACTTTGACC+CGG 0.627458 6_2:+71870630 None:intergenic
ACTCACAACTCTATAAGAGA+GGG 0.630084 6_2:+71868099 None:intergenic
TCTTTATCCGTAAACATCTG+CGG 0.632377 6_2:+71868175 None:intergenic
TTCAAATGCAACAAACTTGG+GGG 0.632464 6_2:-71870273 Msa0927500:five_prime_UTR
GGCTGAAGATGAAAGCAGCA+GGG 0.633689 6_2:-71867898 Msa0927500:three_prime_UTR
TAGCAAGAAAGAATCATCCA+TGG 0.634446 6_2:+71869872 None:intergenic
TCTTGCTTGATGTATCTGTG+AGG 0.638108 6_2:+71871424 Msa0927510:five_prime_UTR
TCTATGATATGCAGTGTCAG+GGG 0.641152 6_2:-71869965 Msa0927500:five_prime_UTR
CGTAGAATCTCCAAACAAGT+CGG 0.644113 6_2:+71869693 None:intergenic
TCAGCTGATCCATGTAAGTG+TGG 0.647244 6_2:+71868612 None:intergenic
GTGTTCGCGATGGAGTGTTG+AGG 0.648666 6_2:-71871361 Msa0927500:five_prime_UTR
ATCAGCATTCATCATACCAG+AGG 0.649150 6_2:-71869657 Msa0927500:five_prime_UTR
CTACTCCAGAAACTTAATTG+CGG 0.654037 6_2:-71868346 Msa0927500:CDS
AAGGCTCACCTTCATCCTGG+TGG 0.655440 6_2:-71869476 Msa0927500:five_prime_UTR
CATCGACAAAAGCCTTGACA+GGG 0.655621 6_2:+71868565 None:intergenic
ATCATCTGATGAGGAAACTG+AGG 0.662710 6_2:-71868140 Msa0927500:three_prime_UTR
GCTGAAGATGAAAGCAGCAG+GGG 0.663173 6_2:-71867897 Msa0927500:three_prime_UTR
GGAATCAGAACCAATCAGCA+GGG 0.667279 6_2:+71870110 None:intergenic
GTTCATTGAAAGCATAGATG+GGG 0.673358 6_2:+71869067 None:intergenic
CTGATGAGGAAACTGAGGAG+TGG 0.674721 6_2:-71868135 Msa0927500:three_prime_UTR
TGAATGCTGATGACTTAGGT+TGG 0.678310 6_2:+71869669 None:intergenic
CCAAGATGGAGATTTCAAAG+TGG 0.679020 6_2:-71871176 Msa0927500:five_prime_UTR
TTGAGCAGCAGGATACAACT+GGG 0.682128 6_2:-71868378 Msa0927500:CDS
TGCATATGTATCATCTGATG+AGG 0.684397 6_2:-71868149 Msa0927500:three_prime_UTR
GTATAAAAGAAAGTTGCATG+TGG 0.697280 6_2:-71870162 Msa0927500:five_prime_UTR
GATAAAGAAAGGAACAAAGG+GGG 0.697638 6_2:-71871403 Msa0927500:five_prime_UTR
AGATAAAGAAAGGAACAAAG+GGG 0.697836 6_2:-71871404 Msa0927500:five_prime_UTR
TATCAATTTGAAACATCCGG+TGG 0.700893 6_2:-71870614 Msa0927500:five_prime_UTR
TGAAGTTGAAGAGGAAGACG+AGG 0.701412 6_2:-71868299 Msa0927500:three_prime_UTR
TACCTAGGAACAGTATTCCG+GGG 0.704013 6_2:-71867303 None:intergenic
AAACCTAGAACTGATGACTG+AGG 0.723563 6_2:+71869530 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAGTATAGTACTATAT+AGG - chr6_2:71867333-71867352 Msa0927500:three_prime_UTR 15.0%
!!! GTTATTGATTTTTAGTATTT+TGG - chr6_2:71867904-71867923 Msa0927500:three_prime_UTR 15.0%
!! TACAACAAATTTAAACAATT+AGG + chr6_2:71868025-71868044 None:intergenic 15.0%
!!! TTGTTTAAATTTGTTGTATT+TGG - chr6_2:71868027-71868046 Msa0927500:intron 15.0%
!!! TTTTTTCTTTAAGAAATCAT+TGG - chr6_2:71868084-71868103 Msa0927500:intron 15.0%
!! GCAAAAATAAAAATTGAAAT+TGG - chr6_2:71868690-71868709 Msa0927500:intron 15.0%
!!! AGATTTTATTATACACAAAT+TGG - chr6_2:71868965-71868984 Msa0927500:intron 15.0%
!!! AAAATTACCAATATCTTTTT+AGG + chr6_2:71869384-71869403 None:intergenic 15.0%
!!! TTAATATTCTTTCTTTTTTG+TGG - chr6_2:71869560-71869579 Msa0927500:five_prime_UTR 15.0%
!! ACATAAAGTATGTTTATTAA+AGG - chr6_2:71869775-71869794 Msa0927500:intron 15.0%
!! AATAAATGATATTAAAGAAG+AGG - chr6_2:71870017-71870036 Msa0927500:five_prime_UTR 15.0%
!! ATAATAATTAAGATGAATTG+CGG - chr6_2:71871497-71871516 Msa0927500:intron 15.0%
!!! TTGCTAATAATTTTGTATAT+GGG + chr6_2:71871628-71871647 Msa0927510:five_prime_UTR 15.0%
!! TTATATACATACTATTTGTT+TGG + chr6_2:71871822-71871841 Msa0927510:five_prime_UTR 15.0%
!!! TTTTTGCATGTCTATAAAAT+TGG - chr6_2:71867880-71867899 Msa0927500:three_prime_UTR 20.0%
!! AATTATATAGATGCTAATGA+AGG - chr6_2:71868056-71868075 Msa0927500:intron 20.0%
!! ATTATATAGATGCTAATGAA+GGG - chr6_2:71868057-71868076 Msa0927500:intron 20.0%
!!! ATTTTGGACATTTACTATTT+TGG - chr6_2:71868404-71868423 Msa0927500:CDS 20.0%
!! ACAAAACAACTAAAAAGATA+AGG + chr6_2:71869245-71869264 None:intergenic 20.0%
!! TCTAAATCCTAAAAAGATAT+TGG - chr6_2:71869374-71869393 Msa0927500:intron 20.0%
!!! AGATATTGGTAATTTTCTAT+AGG - chr6_2:71869388-71869407 Msa0927500:intron 20.0%
!!! GATATTGGTAATTTTCTATA+GGG - chr6_2:71869389-71869408 Msa0927500:intron 20.0%
!! ATTATTCAATTGAAATCCAT+TGG - chr6_2:71869527-71869546 Msa0927500:five_prime_UTR 20.0%
!!! TTTATTTGTCTTTGATTTCT+AGG - chr6_2:71869975-71869994 Msa0927500:five_prime_UTR 20.0%
!! ATAAACTATAATCCTTACTT+TGG - chr6_2:71870258-71870277 Msa0927500:five_prime_UTR 20.0%
!! TAAACTATAATCCTTACTTT+GGG - chr6_2:71870259-71870278 Msa0927500:five_prime_UTR 20.0%
!! TTTAAAGGAAAAAGATAAAC+AGG + chr6_2:71870381-71870400 None:intergenic 20.0%
!! TCAAAATTGTAATATGTAAC+AGG - chr6_2:71871203-71871222 Msa0927500:intron 20.0%
!! TAAAATTAACAGATCTTACA+TGG + chr6_2:71871339-71871358 Msa0927510:five_prime_UTR 20.0%
!! TTGTAAAAAAATTGTTCCAA+AGG - chr6_2:71871431-71871450 Msa0927500:five_prime_UTR 20.0%
!!! TAATTTACTCATTTTTCCTT+TGG + chr6_2:71871450-71871469 Msa0927510:five_prime_UTR 20.0%
!! AAGGAAAAATGAGTAAATTA+AGG - chr6_2:71871450-71871469 Msa0927500:five_prime_UTR 20.0%
!! ATTAAGGAATATTACACAAA+AGG - chr6_2:71871466-71871485 Msa0927500:five_prime_UTR 20.0%
!!! CTTGCTAATAATTTTGTATA+TGG + chr6_2:71871629-71871648 Msa0927510:five_prime_UTR 20.0%
!! ATACAAAATTATTAGCAAGT+TGG - chr6_2:71871630-71871649 Msa0927500:five_prime_UTR 20.0%
! TTAGTATAGTACTATATAGG+TGG - chr6_2:71867336-71867355 Msa0927500:three_prime_UTR 25.0%
!!! ATTCTACTTGAGAACTTTTT+TGG - chr6_2:71867374-71867393 Msa0927500:three_prime_UTR 25.0%
! AAACACAAGAAAATGAAAAC+AGG + chr6_2:71867624-71867643 None:intergenic 25.0%
!!! GAATGCATTTTAGAATTTGA+TGG - chr6_2:71867662-71867681 Msa0927500:three_prime_UTR 25.0%
! AAGATAAAGAAAGGAACAAA+GGG - chr6_2:71867744-71867763 Msa0927500:three_prime_UTR 25.0%
!!! CTTTGTTTGTGTCATTTTTT+TGG - chr6_2:71868449-71868468 Msa0927500:CDS 25.0%
!!! GGTTCTTATTTTTCAGATAA+CGG - chr6_2:71868470-71868489 Msa0927500:CDS 25.0%
!! GTTTATCAATTTGAAACATC+CGG - chr6_2:71868532-71868551 Msa0927500:CDS 25.0%
! TAGTAGCTCAAATTAAGTTT+GGG - chr6_2:71868807-71868826 Msa0927500:intron 25.0%
! CTGTCAAATTGAATTTGATT+CGG - chr6_2:71869155-71869174 Msa0927500:five_prime_UTR 25.0%
!!! TCTTTTTAGTTGTTTTGTCT+AGG - chr6_2:71869247-71869266 Msa0927500:intron 25.0%
! ATTCTTTCTTGCTAGAAAAT+CGG - chr6_2:71869286-71869305 Msa0927500:five_prime_UTR 25.0%
!! AATTGAAATCCATTGGTTAT+AGG - chr6_2:71869534-71869553 Msa0927500:five_prime_UTR 25.0%
!!! TATTCTTTCTTTTTTGTGGT+AGG - chr6_2:71869564-71869583 Msa0927500:five_prime_UTR 25.0%
!!! AAGAAAGCATCTGAATAAAT+GGG + chr6_2:71869927-71869946 None:intergenic 25.0%
!!! TAAGAAAGCATCTGAATAAA+TGG + chr6_2:71869928-71869947 None:intergenic 25.0%
! ACTAAATCTGAAGATAACAA+AGG + chr6_2:71870164-71870183 None:intergenic 25.0%
! ATAGACAATGAAACTTTATG+TGG + chr6_2:71870201-71870220 None:intergenic 25.0%
! TAGCTATATGGTTGTTAATT+TGG - chr6_2:71870289-71870308 Msa0927500:intron 25.0%
!!! GTTAATTTGGATTTTTACGT+TGG - chr6_2:71870302-71870321 Msa0927500:intron 25.0%
!! ATTTTTACGTTGGAAAATTC+TGG - chr6_2:71870312-71870331 Msa0927500:intron 25.0%
! AATGATGAGAAAGTAAATGA+TGG - chr6_2:71870341-71870360 Msa0927500:intron 25.0%
!!! AAAAGGCAAAGGTTTTTTAA+AGG + chr6_2:71870396-71870415 None:intergenic 25.0%
! TACACTATGGAAGAATTAAA+AGG + chr6_2:71870413-71870432 None:intergenic 25.0%
!!! TTTTAATTCTTCCATAGTGT+AGG - chr6_2:71870412-71870431 Msa0927500:intron 25.0%
!!! ATTTTTAACTTCCAGAACAA+TGG + chr6_2:71870455-71870474 None:intergenic 25.0%
! CTTAATGATATGATAACAAC+TGG - chr6_2:71870696-71870715 Msa0927500:intron 25.0%
!! TTAATGCTTTTGTCGATAAA+AGG + chr6_2:71871561-71871580 Msa0927510:intron 25.0%
!!! ACAAAAGCATTAAATTCCAT+TGG - chr6_2:71871568-71871587 Msa0927500:intron 25.0%
! TCATTGAGGAGTTTAAATTT+GGG + chr6_2:71871783-71871802 Msa0927510:five_prime_UTR 25.0%
! TATGTATATAAACGTTACCT+AGG - chr6_2:71871831-71871850 Msa0927500:five_prime_UTR 25.0%
! AACCTCATATAACATTTTGC+AGG - chr6_2:71867468-71867487 Msa0927500:three_prime_UTR 30.0%
TTCCTGCAAAATGTTATATG+AGG + chr6_2:71867473-71867492 None:intergenic 30.0%
!! ATTCTAAAATGCATTCGAGT+TGG + chr6_2:71867658-71867677 None:intergenic 30.0%
ACATCAAGCAAGATAAAGAA+AGG - chr6_2:71867735-71867754 Msa0927500:three_prime_UTR 30.0%
CAAGATAAAGAAAGGAACAA+AGG - chr6_2:71867743-71867762 Msa0927500:three_prime_UTR 30.0%
AGATAAAGAAAGGAACAAAG+GGG - chr6_2:71867745-71867764 Msa0927500:three_prime_UTR 30.0%
! TTTTAGTGACATACATGTGA+AGG + chr6_2:71867845-71867864 None:intergenic 30.0%
TAAATCGGAATTCATTTCAG+AGG + chr6_2:71867937-71867956 None:intergenic 30.0%
ATTCCGATTTAAGTCCTTTA+AGG - chr6_2:71867946-71867965 Msa0927500:intron 30.0%
TCTCCTTAAAGGACTTAAAT+CGG + chr6_2:71867952-71867971 None:intergenic 30.0%
! TTCAAAGTGGATGTTTTGTA+TGG - chr6_2:71867986-71868005 Msa0927500:intron 30.0%
ATAGTAAAGTCGACGTTATT+TGG - chr6_2:71868120-71868139 Msa0927500:three_prime_UTR 30.0%
ATTATGGGACAAATATTCTG+TGG - chr6_2:71868293-71868312 Msa0927500:three_prime_UTR 30.0%
TGAGTTAATATCAACACAAC+AGG + chr6_2:71868358-71868377 None:intergenic 30.0%
! AAGATTGCAGGTGAATATTT+TGG - chr6_2:71868388-71868407 Msa0927500:CDS 30.0%
ATTGATAAACAACTTTGACC+CGG + chr6_2:71868522-71868541 None:intergenic 30.0%
! ACTTCAAGTTTCATATTGCA+TGG + chr6_2:71868788-71868807 None:intergenic 30.0%
GTAGTAGCTCAAATTAAGTT+TGG - chr6_2:71868806-71868825 Msa0927500:intron 30.0%
GTTTCAAATGCAACAAACTT+GGG - chr6_2:71868874-71868893 Msa0927500:intron 30.0%
TTTCAAATGCAACAAACTTG+GGG - chr6_2:71868875-71868894 Msa0927500:intron 30.0%
AATTGACATTTCATTGCTTG+TGG - chr6_2:71868926-71868945 Msa0927500:intron 30.0%
GTATAAAAGAAAGTTGCATG+TGG - chr6_2:71868987-71869006 Msa0927500:intron 30.0%
TTCTTTCTTGCTAGAAAATC+GGG - chr6_2:71869287-71869306 Msa0927500:five_prime_UTR 30.0%
TAATAAAGCACAATTTCCTC+TGG + chr6_2:71869511-71869530 None:intergenic 30.0%
TATTAAACGCCTATAACCAA+TGG + chr6_2:71869546-71869565 None:intergenic 30.0%
! TTAATTTTCTCAATCACAGC+AGG + chr6_2:71869655-71869674 None:intergenic 30.0%
TGCTGTGATTGAGAAAATTA+AGG - chr6_2:71869654-71869673 Msa0927500:five_prime_UTR 30.0%
GAGTTCAACTAAATTCTCAA+TGG + chr6_2:71869729-71869748 None:intergenic 30.0%
! TCAAAGACAAATAAAGCACT+TGG + chr6_2:71869970-71869989 None:intergenic 30.0%
! AGTTCATTGAAAGCATAGAT+GGG + chr6_2:71870086-71870105 None:intergenic 30.0%
! AAGTTCATTGAAAGCATAGA+TGG + chr6_2:71870087-71870106 None:intergenic 30.0%
AATCAGCAACATGAAACAAA+TGG + chr6_2:71870233-71870252 None:intergenic 30.0%
ATGGAAGAATTAAAAGGCAA+AGG + chr6_2:71870407-71870426 None:intergenic 30.0%
! TGATGATGATGATGATATCA+AGG - chr6_2:71870671-71870690 Msa0927500:intron 30.0%
!! TTGGTCTTTTCTCTATCAAT+TGG + chr6_2:71870735-71870754 None:intergenic 30.0%
!!! TATTGCTGTCACTTTGATTT+TGG - chr6_2:71871101-71871120 Msa0927500:intron 30.0%
TTTATAACTAATGCTTCGCA+CGG - chr6_2:71871393-71871412 Msa0927500:five_prime_UTR 30.0%
AGATGAATTGCGGAATAAAT+TGG - chr6_2:71871507-71871526 Msa0927500:intron 30.0%
! TATATGGGTTGTGACATTAA+GGG + chr6_2:71871613-71871632 Msa0927510:intron 30.0%
CTCATTGAGGAGTTTAAATT+TGG + chr6_2:71871784-71871803 Msa0927510:five_prime_UTR 30.0%
!!! GTTTTTTAGATTGCTCATTG+AGG + chr6_2:71871797-71871816 Msa0927510:five_prime_UTR 30.0%
! CATTTTGCAGGAAAGAAACT+AGG - chr6_2:71867480-71867499 Msa0927500:three_prime_UTR 35.0%
TAAAATGTTAGTAGCAGCTG+AGG - chr6_2:71867529-71867548 Msa0927500:three_prime_UTR 35.0%
AAAGGAGATCCATATCCTAT+AGG + chr6_2:71867702-71867721 None:intergenic 35.0%
GATAAAGAAAGGAACAAAGG+GGG - chr6_2:71867746-71867765 Msa0927500:three_prime_UTR 35.0%
TTTGTCTTTGAGCACAAGAT+TGG + chr6_2:71868166-71868185 None:intergenic 35.0%
! GCGTAAGATTTTCTGATTTC+AGG - chr6_2:71868186-71868205 Msa0927500:three_prime_UTR 35.0%
TCGATTATGCAGTGGAAATT+TGG - chr6_2:71868260-71868279 Msa0927500:three_prime_UTR 35.0%
ATTTGGTCGATGCAACATTA+TGG - chr6_2:71868277-71868296 Msa0927500:three_prime_UTR 35.0%
TTTGGTCGATGCAACATTAT+GGG - chr6_2:71868278-71868297 Msa0927500:three_prime_UTR 35.0%
GATGAAGTTTCTTGCTGAAA+AGG - chr6_2:71868320-71868339 Msa0927500:exon 35.0%
AAGTTTCTTGCTGAAAAGGA+AGG - chr6_2:71868324-71868343 Msa0927500:exon 35.0%
ACAAACAAAGTGACGAACAA+CGG + chr6_2:71868439-71868458 None:intergenic 35.0%
! TATCAATTTGAAACATCCGG+TGG - chr6_2:71868535-71868554 Msa0927500:CDS 35.0%
! TGCTCTGGATGTTAATTGTT+GGG - chr6_2:71868591-71868610 Msa0927500:CDS 35.0%
GATGTTAATTGTTGGGAAAG+TGG - chr6_2:71868598-71868617 Msa0927500:CDS 35.0%
TAATTGTTGGGAAAGTGGTA+TGG - chr6_2:71868603-71868622 Msa0927500:CDS 35.0%
!! GGTAGATTGTTTGCTATGAA+TGG - chr6_2:71868828-71868847 Msa0927500:intron 35.0%
!! AGATTGTTTGCTATGAATGG+TGG - chr6_2:71868831-71868850 Msa0927500:intron 35.0%
GGTTTCAAATGCAACAAACT+TGG - chr6_2:71868873-71868892 Msa0927500:intron 35.0%
TTCAAATGCAACAAACTTGG+GGG - chr6_2:71868876-71868895 Msa0927500:intron 35.0%
!! GGGTTTGCTCAACTTTATTT+TGG - chr6_2:71868896-71868915 Msa0927500:intron 35.0%
TCAATTTGACAGATGATGCA+TGG + chr6_2:71869147-71869166 None:intergenic 35.0%
TTTCTATGATATGCAGTGTC+AGG - chr6_2:71869182-71869201 Msa0927500:intron 35.0%
TTCTATGATATGCAGTGTCA+GGG - chr6_2:71869183-71869202 Msa0927500:intron 35.0%
TAGCAAGAAAGAATCATCCA+TGG + chr6_2:71869280-71869299 None:intergenic 35.0%
! TAGAAAATCGGGCAATTTTG+AGG - chr6_2:71869298-71869317 Msa0927500:intron 35.0%
! AGAAAATCGGGCAATTTTGA+GGG - chr6_2:71869299-71869318 Msa0927500:intron 35.0%
! AATTTTCTATAGGGCTGAGT+TGG - chr6_2:71869398-71869417 Msa0927500:five_prime_UTR 35.0%
! ATTTTCTATAGGGCTGAGTT+GGG - chr6_2:71869399-71869418 Msa0927500:five_prime_UTR 35.0%
ATGATGAATGCTGATGACTT+AGG + chr6_2:71869487-71869506 None:intergenic 35.0%
AAATGGGTGACATAATACCT+GGG + chr6_2:71869911-71869930 None:intergenic 35.0%
TAAATGGGTGACATAATACC+TGG + chr6_2:71869912-71869931 None:intergenic 35.0%
CTTATTCAACTTCCCATTGA+GGG + chr6_2:71870043-71870062 None:intergenic 35.0%
! GTTCATTGAAAGCATAGATG+GGG + chr6_2:71870085-71870104 None:intergenic 35.0%
AATTGAAGAGTCCTACACTA+TGG + chr6_2:71870426-71870445 None:intergenic 35.0%
! CAATTTGCTTTCCATTGTTC+TGG - chr6_2:71870441-71870460 Msa0927500:intron 35.0%
CATCACCTTCTTCATTATCT+TGG + chr6_2:71870656-71870675 None:intergenic 35.0%
CTACTCCAGAAACTTAATTG+CGG - chr6_2:71870803-71870822 Msa0927500:five_prime_UTR 35.0%
TTGAACCGCAATTAAGTTTC+TGG + chr6_2:71870811-71870830 None:intergenic 35.0%
TGTGAAGATCAATCTGAAGA+AGG - chr6_2:71870937-71870956 Msa0927500:intron 35.0%
TCTTTATCCGTAAACATCTG+CGG + chr6_2:71870977-71870996 None:intergenic 35.0%
TGCATATGTATCATCTGATG+AGG - chr6_2:71871000-71871019 Msa0927500:five_prime_UTR 35.0%
ACTCACAACTCTATAAGAGA+GGG + chr6_2:71871053-71871072 Msa0927510:five_prime_UTR 35.0%
AACTCACAACTCTATAAGAG+AGG + chr6_2:71871054-71871073 Msa0927510:five_prime_UTR 35.0%
GTTCCTGATACCAAGATAAA+AGG - chr6_2:71871306-71871325 Msa0927500:intron 35.0%
! CTTCCTTTTATCTTGGTATC+AGG + chr6_2:71871312-71871331 Msa0927510:five_prime_UTR 35.0%
! TGGAGTTCTTCCTTTTATCT+TGG + chr6_2:71871319-71871338 Msa0927510:five_prime_UTR 35.0%
TTATAACTAATGCTTCGCAC+GGG - chr6_2:71871394-71871413 Msa0927500:five_prime_UTR 35.0%
TTCCATTGGATAAGAAGATG+AGG - chr6_2:71871582-71871601 Msa0927500:intron 35.0%
TCCATTGGATAAGAAGATGA+GGG - chr6_2:71871583-71871602 Msa0927500:intron 35.0%
! GTATATGGGTTGTGACATTA+AGG + chr6_2:71871614-71871633 Msa0927510:intron 35.0%
TTGAGGAGTTTAAATTTGGG+AGG + chr6_2:71871780-71871799 Msa0927510:five_prime_UTR 35.0%
! TAGAATTTGATGGCAGCAGT+TGG - chr6_2:71867672-71867691 Msa0927500:three_prime_UTR 40.0%
! AGAATTTGATGGCAGCAGTT+GGG - chr6_2:71867673-71867692 Msa0927500:three_prime_UTR 40.0%
GTTGGGATACCTATAGGATA+TGG - chr6_2:71867690-71867709 Msa0927500:three_prime_UTR 40.0%
CTTGCTTGATGTATCTGTGA+GGG + chr6_2:71867727-71867746 None:intergenic 40.0%
TCTTGCTTGATGTATCTGTG+AGG + chr6_2:71867728-71867747 None:intergenic 40.0%
! TCCTTTAAGGAGATCCAAGA+TGG - chr6_2:71867959-71867978 Msa0927500:intron 40.0%
TCCATCTTGGATCTCCTTAA+AGG + chr6_2:71867963-71867982 None:intergenic 40.0%
!! CCACTTTGAAATCTCCATCT+TGG + chr6_2:71867976-71867995 None:intergenic 40.0%
CCAAGATGGAGATTTCAAAG+TGG - chr6_2:71867973-71867992 Msa0927500:intron 40.0%
AAGTCGACGTTATTTGGATC+TGG - chr6_2:71868126-71868145 Msa0927500:three_prime_UTR 40.0%
! CAATGTTGTCGATTATGCAG+TGG - chr6_2:71868252-71868271 Msa0927500:three_prime_UTR 40.0%
TTGCTGAAAAGGAAGGAAAC+AGG - chr6_2:71868331-71868350 Msa0927500:exon 40.0%
CACCTAATCTTTGCAACAAC+TGG - chr6_2:71868495-71868514 Msa0927500:CDS 40.0%
GACCAGTTGTTGCAAAGATT+AGG + chr6_2:71868500-71868519 None:intergenic 40.0%
AATCTTTGCAACAACTGGTC+CGG - chr6_2:71868500-71868519 Msa0927500:CDS 40.0%
TAGGGCTAGGTAAGTTAACT+TGG - chr6_2:71868568-71868587 Msa0927500:CDS 40.0%
! GTGCTCTGGATGTTAATTGT+TGG - chr6_2:71868590-71868609 Msa0927500:CDS 40.0%
!! GAATGGTGGTTTGTGTTTTC+AGG - chr6_2:71868845-71868864 Msa0927500:intron 40.0%
!!! GGTTTGTGTTTTCAGGTATC+TGG - chr6_2:71868852-71868871 Msa0927500:intron 40.0%
AGAACATATTCCCTGCTGAT+TGG - chr6_2:71869029-71869048 Msa0927500:intron 40.0%
TCTATGATATGCAGTGTCAG+GGG - chr6_2:71869184-71869203 Msa0927500:intron 40.0%
TTTGTCTAGGTTCTTGACCA+TGG - chr6_2:71869260-71869279 Msa0927500:five_prime_UTR 40.0%
CGTAGAATCTCCAAACAAGT+CGG + chr6_2:71869459-71869478 None:intergenic 40.0%
TGAATGCTGATGACTTAGGT+TGG + chr6_2:71869483-71869502 None:intergenic 40.0%
ATCAGCATTCATCATACCAG+AGG - chr6_2:71869492-71869511 Msa0927500:five_prime_UTR 40.0%
AAACCTAGAACTGATGACTG+AGG + chr6_2:71869622-71869641 None:intergenic 40.0%
CATTGCTTACACTGAGTTTC+AGG - chr6_2:71869837-71869856 Msa0927500:intron 40.0%
TTACACTGAGTTTCAGGATG+TGG - chr6_2:71869843-71869862 Msa0927500:intron 40.0%
AATACCTGGGTATCATCAAC+AGG + chr6_2:71869898-71869917 None:intergenic 40.0%
ATTAAAGAAGAGGCCCTCAA+TGG - chr6_2:71870027-71870046 Msa0927500:five_prime_UTR 40.0%
TTAAAGAAGAGGCCCTCAAT+GGG - chr6_2:71870028-71870047 Msa0927500:five_prime_UTR 40.0%
GCTTATTCAACTTCCCATTG+AGG + chr6_2:71870044-71870063 None:intergenic 40.0%
AGATGGGGCAAACACTTATT+CGG + chr6_2:71870070-71870089 None:intergenic 40.0%
ACTTACACATCACCATCAAC+AGG + chr6_2:71870126-71870145 None:intergenic 40.0%
TTGGGATGAGCTTAGCTATA+TGG - chr6_2:71870277-71870296 Msa0927500:five_prime_UTR 40.0%
CTTGTCATTGTCCTCATCAT+CGG + chr6_2:71870505-71870524 None:intergenic 40.0%
!! CATTATCTTGGAAGCGTTGT+AGG + chr6_2:71870644-71870663 None:intergenic 40.0%
CGCTTCCAAGATAATGAAGA+AGG - chr6_2:71870648-71870667 Msa0927500:five_prime_UTR 40.0%
ATCTGACGATGAAGTTGAAG+AGG - chr6_2:71870841-71870860 Msa0927500:five_prime_UTR 40.0%
TTGATCTTCACAGCATCAGA+TGG + chr6_2:71870929-71870948 None:intergenic 40.0%
CTTTATCCGTAAACATCTGC+GGG + chr6_2:71870976-71870995 None:intergenic 40.0%
ATCATCTGATGAGGAAACTG+AGG - chr6_2:71871009-71871028 Msa0927500:five_prime_UTR 40.0%
TCTATAAGAGAGGGACTGTT+TGG + chr6_2:71871044-71871063 Msa0927510:five_prime_UTR 40.0%
TTCCATCTTTGCATGCACTA+AGG - chr6_2:71871141-71871160 Msa0927500:intron 40.0%
TACCTTAGTGCATGCAAAGA+TGG + chr6_2:71871146-71871165 Msa0927510:five_prime_UTR 40.0%
! GAACGCTCAATTCTTTTCAC+CGG - chr6_2:71871230-71871249 Msa0927500:intron 40.0%
TCCCTCATCTTCTTATCCAA+TGG + chr6_2:71871587-71871606 Msa0927510:intron 40.0%
TTCAAGTGATCGACAACACT+AGG + chr6_2:71871744-71871763 Msa0927510:five_prime_UTR 40.0%
AGTAGCAGCTGAGGTATGTA+AGG - chr6_2:71867538-71867557 Msa0927500:three_prime_UTR 45.0%
GTAGCAGCTGAGGTATGTAA+GGG - chr6_2:71867539-71867558 Msa0927500:three_prime_UTR 45.0%
TAGCAGCTGAGGTATGTAAG+GGG - chr6_2:71867540-71867559 Msa0927500:three_prime_UTR 45.0%
GATGTATCTGTGAGGGTCAA+AGG + chr6_2:71867720-71867739 None:intergenic 45.0%
TTCACCTGCAATCTTGCACT+GGG + chr6_2:71868383-71868402 None:intergenic 45.0%
ATTCACCTGCAATCTTGCAC+TGG + chr6_2:71868384-71868403 None:intergenic 45.0%
ATCTTTGCAACAACTGGTCC+GGG - chr6_2:71868501-71868520 Msa0927500:CDS 45.0%
!! GGTAAGTTAACTTGGTGCTC+TGG - chr6_2:71868576-71868595 Msa0927500:CDS 45.0%
TTAGAACAGTCGACGCAGAT+TGG - chr6_2:71868715-71868734 Msa0927500:intron 45.0%
GGAATCAGAACCAATCAGCA+GGG + chr6_2:71869042-71869061 None:intergenic 45.0%
TGGAATCAGAACCAATCAGC+AGG + chr6_2:71869043-71869062 None:intergenic 45.0%
!! TGTGATCGAACCGACTTGTT+TGG - chr6_2:71869446-71869465 Msa0927500:five_prime_UTR 45.0%
GAACCTCAGTCATCAGTTCT+AGG - chr6_2:71869616-71869635 Msa0927500:five_prime_UTR 45.0%
ATTAAGGCTCACCTTCATCC+TGG - chr6_2:71869670-71869689 Msa0927500:five_prime_UTR 45.0%
CTTCCTCTTAAGATCACCTC+TGG + chr6_2:71869706-71869725 None:intergenic 45.0%
CTTGATTCTGCTCCTGTTGA+TGG - chr6_2:71870111-71870130 Msa0927500:five_prime_UTR 45.0%
GCTAAGCTCATCCCAAAGTA+AGG + chr6_2:71870273-71870292 None:intergenic 45.0%
! GACAACCAATCCTTTTCTCC+AGG - chr6_2:71870475-71870494 Msa0927500:intron 45.0%
GAAGACCTGGAGAAAAGGAT+TGG + chr6_2:71870483-71870502 None:intergenic 45.0%
CGATGATGAGGACAATGACA+AGG - chr6_2:71870503-71870522 Msa0927500:intron 45.0%
AACACAGTGCCACACTTACA+TGG - chr6_2:71870528-71870547 Msa0927500:intron 45.0%
TCAGCTGATCCATGTAAGTG+TGG + chr6_2:71870540-71870559 None:intergenic 45.0%
GACTTGTCTTTACCTGCAAG+CGG - chr6_2:71870558-71870577 Msa0927500:intron 45.0%
CATCGACAAAAGCCTTGACA+GGG + chr6_2:71870587-71870606 None:intergenic 45.0%
TCATCGACAAAAGCCTTGAC+AGG + chr6_2:71870588-71870607 None:intergenic 45.0%
GTCACTGTCATCTTCCTCTT+CGG + chr6_2:71870616-71870635 None:intergenic 45.0%
AAGACCAACTCCATCAGCAA+TGG - chr6_2:71870747-71870766 Msa0927500:intron 45.0%
TTGAGCAGCAGGATACAACT+GGG - chr6_2:71870771-71870790 Msa0927500:intron 45.0%
TGAAGTTGAAGAGGAAGACG+AGG - chr6_2:71870850-71870869 Msa0927500:five_prime_UTR 45.0%
GATGATCCCGCAGATGTTTA+CGG - chr6_2:71870967-71870986 Msa0927500:intron 45.0%
!!! GCTGTCACTTTGATTTTGGC+AGG - chr6_2:71871105-71871124 Msa0927500:intron 45.0%
!! ATATGAAAAATATTAATAAT+TGG + chr6_2:71869063-71869082 None:intergenic 5.0%
GCAGCAGTTGGGATACCTAT+AGG - chr6_2:71867684-71867703 Msa0927500:three_prime_UTR 50.0%
CGAACACGGTCAAGAATTGC+TGG + chr6_2:71867775-71867794 None:intergenic 50.0%
ATTCTTGACCGTGTTCGCGA+TGG - chr6_2:71867778-71867797 Msa0927500:three_prime_UTR 50.0%
TCAACACTCCATCGCGAACA+CGG + chr6_2:71867789-71867808 None:intergenic 50.0%
TGAAACATCCGGTGGTTGAG+AGG - chr6_2:71868543-71868562 Msa0927500:CDS 50.0%
ATCCGGTGGTTGAGAGGTTT+AGG - chr6_2:71868549-71868568 Msa0927500:CDS 50.0%
TCCGGTGGTTGAGAGGTTTA+GGG - chr6_2:71868550-71868569 Msa0927500:CDS 50.0%
! TGGTTGAGAGGTTTAGGGCT+AGG - chr6_2:71868555-71868574 Msa0927500:CDS 50.0%
TCACCTTCATCCTGGTGGAA+TGG - chr6_2:71869678-71869697 Msa0927500:five_prime_UTR 50.0%
GAGCCAGAGGTGATCTTAAG+AGG - chr6_2:71869700-71869719 Msa0927500:five_prime_UTR 50.0%
!! AGCTCCTGTTGATGATACCC+AGG - chr6_2:71869891-71869910 Msa0927500:five_prime_UTR 50.0%
CATCGGAAGACCTGGAGAAA+AGG + chr6_2:71870488-71870507 None:intergenic 50.0%
TGTCGATGAAGAAGCCGAAG+AGG - chr6_2:71870599-71870618 Msa0927500:five_prime_UTR 50.0%
CAAGCCATTGCTGATGGAGT+TGG + chr6_2:71870754-71870773 None:intergenic 50.0%
CTTGAGCAGCAGGATACAAC+TGG - chr6_2:71870770-71870789 Msa0927500:intron 50.0%
CTGATGAGGAAACTGAGGAG+TGG - chr6_2:71871014-71871033 Msa0927500:five_prime_UTR 50.0%
!! CTGCTGCTTTCATCTTCAGC+CGG + chr6_2:71871252-71871271 Msa0927510:five_prime_UTR 50.0%
GGCTGAAGATGAAAGCAGCA+GGG - chr6_2:71871251-71871270 Msa0927500:intron 50.0%
GCTGAAGATGAAAGCAGCAG+GGG - chr6_2:71871252-71871271 Msa0927500:intron 50.0%
!! GTGTTCGCGATGGAGTGTTG+AGG - chr6_2:71867788-71867807 Msa0927500:three_prime_UTR 55.0%
CATGCCCAGTGCAAGATTGC+AGG - chr6_2:71868376-71868395 Msa0927500:CDS 55.0%
GCCCTAAACCTCTCAACCAC+CGG + chr6_2:71868554-71868573 None:intergenic 55.0%
AAGGCTCACCTTCATCCTGG+TGG - chr6_2:71869673-71869692 Msa0927500:five_prime_UTR 55.0%
GCTCCATTCCACCAGGATGA+AGG + chr6_2:71869684-71869703 None:intergenic 55.0%
CTCCAGGTCTTCCGATGATG+AGG - chr6_2:71870491-71870510 Msa0927500:intron 55.0%
GTCCTCATCATCGGAAGACC+TGG + chr6_2:71870496-71870515 None:intergenic 55.0%
GCTGCTCAAGCCATTGCTGA+TGG + chr6_2:71870760-71870779 None:intergenic 55.0%
TCAGCAATGGCTTGAGCAGC+AGG - chr6_2:71870760-71870779 Msa0927500:intron 55.0%
GCAGCAGGATACAACTGGGA+TGG - chr6_2:71870775-71870794 Msa0927500:five_prime_UTR 55.0%
CGGCTGAAGATGAAAGCAGC+AGG - chr6_2:71871250-71871269 Msa0927500:intron 55.0%
TCCTGGTGGAATGGAGCCAG+AGG - chr6_2:71869687-71869706 Msa0927500:five_prime_UTR 60.0%
! ACCTCTGGCTCCATTCCACC+AGG + chr6_2:71869691-71869710 None:intergenic 60.0%
TTGACAGGGTCACCGCTTGC+AGG + chr6_2:71870573-71870592 None:intergenic 60.0%
TGCAAGCGGTGACCCTGTCA+AGG - chr6_2:71870572-71870591 Msa0927500:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 71867306 71871865 71867306 ID=Msa0927500;Name=Msa0927500
chr6_2 mRNA 71867306 71871865 71867306 ID=Msa0927500-mRNA-1;Parent=Msa0927500;Name=Msa0927500-mRNA-1;_AED=0.25;_eAED=0.25;_QI=1662|1|1|1|0.5|0.38|13|871|129
chr6_2 exon 71867306 71867946 71867306 ID=Msa0927500-mRNA-1:exon:12077;Parent=Msa0927500-mRNA-1
chr6_2 exon 71868105 71868674 71868105 ID=Msa0927500-mRNA-1:exon:12076;Parent=Msa0927500-mRNA-1
chr6_2 exon 71869032 71869174 71869032 ID=Msa0927500-mRNA-1:exon:12075;Parent=Msa0927500-mRNA-1
chr6_2 exon 71869259 71869312 71869259 ID=Msa0927500-mRNA-1:exon:12074;Parent=Msa0927500-mRNA-1
chr6_2 exon 71869390 71869761 71869390 ID=Msa0927500-mRNA-1:exon:12073;Parent=Msa0927500-mRNA-1
chr6_2 exon 71869846 71870304 71869846 ID=Msa0927500-mRNA-1:exon:12072;Parent=Msa0927500-mRNA-1
chr6_2 exon 71870595 71870685 71870595 ID=Msa0927500-mRNA-1:exon:12071;Parent=Msa0927500-mRNA-1
chr6_2 exon 71870774 71870899 71870774 ID=Msa0927500-mRNA-1:exon:12070;Parent=Msa0927500-mRNA-1
chr6_2 exon 71870984 71871074 71870984 ID=Msa0927500-mRNA-1:exon:12069;Parent=Msa0927500-mRNA-1
chr6_2 exon 71871164 71871212 71871164 ID=Msa0927500-mRNA-1:exon:12068;Parent=Msa0927500-mRNA-1
chr6_2 exon 71871321 71871496 71871321 ID=Msa0927500-mRNA-1:exon:12067;Parent=Msa0927500-mRNA-1
chr6_2 exon 71871621 71871681 71871621 ID=Msa0927500-mRNA-1:exon:12066;Parent=Msa0927500-mRNA-1
chr6_2 exon 71871776 71871865 71871776 ID=Msa0927500-mRNA-1:exon:12065;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71871776 71871865 71871776 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71871621 71871681 71871621 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71871321 71871496 71871321 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71871164 71871212 71871164 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71870984 71871074 71870984 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71870774 71870899 71870774 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71870595 71870685 71870595 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71869846 71870304 71869846 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71869390 71869761 71869390 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71869259 71869312 71869259 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 five_prime_UTR 71869082 71869174 71869082 ID=Msa0927500-mRNA-1:five_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 CDS 71869032 71869081 71869032 ID=Msa0927500-mRNA-1:cds;Parent=Msa0927500-mRNA-1
chr6_2 CDS 71868335 71868674 71868335 ID=Msa0927500-mRNA-1:cds;Parent=Msa0927500-mRNA-1
chr6_2 three_prime_UTR 71868105 71868334 71868105 ID=Msa0927500-mRNA-1:three_prime_utr;Parent=Msa0927500-mRNA-1
chr6_2 three_prime_UTR 71867306 71867946 71867306 ID=Msa0927500-mRNA-1:three_prime_utr;Parent=Msa0927500-mRNA-1
Gene Sequence

>Msa0927500

ATGCTTTCAATGAACTTGAAACTTGATTCTGCTCCTGTTGATGGTGATGTGTCTTCCGATGATGAGGACAATGACAAGGAGAACACAGTGCCACACTTACATGGATCAGCTGACTTGTCTTTACCTGCAAGCGGTGACCCTGTCAAGGCTTTTGTCGATGAAGAAGCCGAAGAGGAAGATGACAGTGACAATGACCTACAACGCTTCCAAGATAATGAAGAAGGTGATGATGATGATGATATCAAGGAGCTTAATGATATGATAACAACTGGATATGAAGAAGCGCCAATTGATAGAGAAAAGACCAACTCCATCAGCAATGGCTTGAGCAGCAGGATACAACTGGGATGGATAATCTACTCCAGAAACTTAATTGCGGTTCAAGATTGA
Protein sequence

>Msa0927500

MLSMNLKLDSAPVDGDVSSDDEDNDKENTVPHLHGSADLSLPASGDPVKAFVDEEAEEEDDSDNDLQRFQDNEEGDDDDDIKELNDMITTGYEEAPIDREKTNSISNGLSSRIQLGWIIYSRNLIAVQD*