Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603480 | XP_003606690.1 | 91.815 | 281 | 10 | 1 | 1 | 268 | 1 | 281 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603480 | sp|Q09893|YAI5_SCHPO | 25.200 | 250 | 132 | 8 | 18 | 246 | 8 | 223 | 9.54e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603480 | Msa1339030 | 0.935231 | 1.173514e-96 | -8.615850e-47 |
| Msa0603480 | Msa1459980 | 0.851937 | 6.408843e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603480 | MtrunA17_Chr4g0031841 | 91.815 | 281 | 10 | 1 | 1 | 268 | 1 | 281 | 0.0 | 526 |
| Msa0603480 | MtrunA17_Chr2g0328451 | 68.493 | 292 | 67 | 5 | 1 | 268 | 1 | 291 | 1.56e-138 | 391 |
| Msa0603480 | MtrunA17_Chr7g0238911 | 50.166 | 301 | 117 | 4 | 1 | 268 | 1 | 301 | 1.05e-96 | 286 |
| Msa0603480 | MtrunA17_Chr4g0009921 | 51.625 | 277 | 105 | 4 | 8 | 255 | 9 | 285 | 1.62e-93 | 277 |
| Msa0603480 | MtrunA17_Chr4g0009961 | 48.973 | 292 | 115 | 5 | 11 | 268 | 9 | 300 | 5.34e-89 | 266 |
| Msa0603480 | MtrunA17_Chr1g0193721 | 47.101 | 276 | 101 | 5 | 8 | 268 | 4 | 249 | 1.68e-81 | 245 |
| Msa0603480 | MtrunA17_Chr1g0205581 | 39.179 | 268 | 119 | 7 | 11 | 257 | 5 | 249 | 2.69e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603480 | AT5G59480.4 | 59.854 | 274 | 94 | 3 | 7 | 264 | 7 | 280 | 1.42e-112 | 325 |
| Msa0603480 | AT5G59480.5 | 59.854 | 274 | 94 | 3 | 7 | 264 | 7 | 280 | 1.42e-112 | 325 |
| Msa0603480 | AT5G59480.3 | 59.854 | 274 | 94 | 3 | 7 | 264 | 7 | 280 | 1.42e-112 | 325 |
| Msa0603480 | AT5G59480.1 | 59.854 | 274 | 94 | 3 | 7 | 264 | 7 | 280 | 1.42e-112 | 325 |
| Msa0603480 | AT5G59480.2 | 59.854 | 274 | 93 | 4 | 7 | 264 | 7 | 279 | 1.25e-110 | 320 |
| Msa0603480 | AT5G02230.2 | 53.710 | 283 | 113 | 3 | 1 | 268 | 1 | 280 | 1.34e-93 | 277 |
| Msa0603480 | AT5G02230.1 | 53.710 | 283 | 113 | 3 | 1 | 268 | 1 | 280 | 1.34e-93 | 277 |
| Msa0603480 | AT5G02230.3 | 53.710 | 283 | 113 | 3 | 1 | 268 | 38 | 317 | 7.75e-93 | 277 |
| Msa0603480 | AT5G59490.1 | 50.000 | 282 | 105 | 5 | 6 | 268 | 2 | 266 | 6.01e-81 | 244 |
| Msa0603480 | AT3G62040.1 | 48.750 | 240 | 79 | 5 | 45 | 268 | 1 | 212 | 3.76e-70 | 215 |
| Msa0603480 | AT5G59490.2 | 50.439 | 228 | 83 | 3 | 6 | 220 | 2 | 212 | 1.60e-63 | 198 |
| Msa0603480 | AT2G32150.1 | 37.959 | 245 | 117 | 3 | 16 | 247 | 7 | 229 | 4.31e-58 | 186 |
| Msa0603480 | AT2G32150.2 | 39.269 | 219 | 98 | 4 | 16 | 221 | 7 | 203 | 1.54e-49 | 163 |
| Msa0603480 | AT2G32150.3 | 39.394 | 198 | 85 | 4 | 16 | 200 | 7 | 182 | 6.61e-43 | 145 |
Find 84 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATTGTTTCCAAATTTC+AGG | 0.187226 | 4_2:+48030718 | None:intergenic |
| ATCACCCCTAGCCTGAAATT+TGG | 0.191523 | 4_2:-48030729 | Msa0603480:three_prime_UTR |
| AACAAGAGACAATCATATTT+TGG | 0.202288 | 4_2:+48033438 | None:intergenic |
| GGACAACAATGGCTGGTCTT+AGG | 0.241770 | 4_2:-48032822 | Msa0603480:CDS |
| TATTCGTTATACAAGACTTA+TGG | 0.249582 | 4_2:-48032844 | Msa0603480:CDS |
| CAGACTTCACAAATTATATA+TGG | 0.268556 | 4_2:+48033980 | None:intergenic |
| TGATGCTGTCAGAGGAATTC+AGG | 0.289738 | 4_2:+48032262 | None:intergenic |
| ACACTTTATCCTTTGAGTTC+TGG | 0.296418 | 4_2:-48033089 | Msa0603480:CDS |
| TTGCAGACAACTGGTGTCTT+TGG | 0.298955 | 4_2:+48032159 | None:intergenic |
| TGCAAAATGCCCTTGAGAAC+AGG | 0.303805 | 4_2:+48032507 | None:intergenic |
| AATCAAGTTATTAAAATATC+TGG | 0.323170 | 4_2:+48033901 | None:intergenic |
| TCTGGTTTAAGTAGATTATA+TGG | 0.325088 | 4_2:+48032531 | None:intergenic |
| TGCATTCTTACTGTTCTTTG+AGG | 0.326553 | 4_2:+48032087 | None:intergenic |
| TTATACTGTGTAATTACTTA+AGG | 0.365491 | 4_2:-48030673 | Msa0603480:three_prime_UTR |
| ATAGTGGAGAATGGATTAGA+AGG | 0.367574 | 4_2:+48033783 | None:intergenic |
| ATTCGTTATACAAGACTTAT+GGG | 0.378858 | 4_2:-48032843 | Msa0603480:CDS |
| TATAACGAATAGCACAATTC+AGG | 0.402517 | 4_2:+48032856 | None:intergenic |
| GACAACAATGGCTGGTCTTA+GGG | 0.420457 | 4_2:-48032821 | Msa0603480:intron |
| TCAAAAGGTTTGCAGACAAC+TGG | 0.421037 | 4_2:+48032150 | None:intergenic |
| AAATATGATTGTCTCTTGTT+CGG | 0.422018 | 4_2:-48033435 | Msa0603480:intron |
| GATTAGAAGGAGAAGGAACT+AGG | 0.425103 | 4_2:+48033796 | None:intergenic |
| ATTACACAGTATAAGATATA+CGG | 0.434744 | 4_2:+48030682 | None:intergenic |
| ACTTAAGGCATTATGCTTCA+AGG | 0.435396 | 4_2:-48030658 | Msa0603480:three_prime_UTR |
| ACTAGGGGTTTATATAGAAA+AGG | 0.437740 | 4_2:+48033813 | None:intergenic |
| TATCCACTATGATTTGTTTG+TGG | 0.446238 | 4_2:-48030864 | Msa0603480:three_prime_UTR |
| GGAAGTACCGTATCAGAATC+AGG | 0.448802 | 4_2:+48032180 | None:intergenic |
| ATTAGAAGGAGAAGGAACTA+GGG | 0.452307 | 4_2:+48033797 | None:intergenic |
| TTGTTTCCAAATTTCAGGCT+AGG | 0.455511 | 4_2:+48030723 | None:intergenic |
| ACAGTATAAGATATACGGTT+GGG | 0.458504 | 4_2:+48030687 | None:intergenic |
| TGTTTCCAAATTTCAGGCTA+GGG | 0.460671 | 4_2:+48030724 | None:intergenic |
| TGGTGGTGTCTTTAGTATGT+TGG | 0.460705 | 4_2:-48030908 | Msa0603480:three_prime_UTR |
| TGTGAAGTCAAGATGGAAAA+CGG | 0.461158 | 4_2:-48033486 | Msa0603480:exon |
| GGAAAACGGGCATAAATTCC+AGG | 0.464067 | 4_2:-48033472 | Msa0603480:CDS |
| GCATTCTTACTGTTCTTTGA+GGG | 0.472107 | 4_2:+48032088 | None:intergenic |
| TTTACAGACAGCTAAACGTC+TGG | 0.475885 | 4_2:-48031730 | Msa0603480:CDS |
| GAGAGGCATTTCCAGAGCTA+TGG | 0.475952 | 4_2:-48031027 | Msa0603480:CDS |
| GGTACATCCGTGCGCAGTAC+AGG | 0.476231 | 4_2:-48031085 | Msa0603480:CDS |
| GTGAAGTCAAGATGGAAAAC+GGG | 0.482586 | 4_2:-48033485 | Msa0603480:exon |
| GAGTATATGCTTCAGAAGCT+TGG | 0.484652 | 4_2:-48032898 | Msa0603480:CDS |
| TCGTCGACTTCCCATAGCTC+TGG | 0.485678 | 4_2:+48031016 | None:intergenic |
| AGAGAAGAGATAGTGGAGAA+TGG | 0.485921 | 4_2:+48033774 | None:intergenic |
| TATCCACTATGATTTGTTTG+TGG | 0.490184 | 4_2:-48030928 | Msa0603480:three_prime_UTR |
| ATAGCGGAGAGAAGAGATAG+TGG | 0.492445 | 4_2:+48033767 | None:intergenic |
| AGAGGCATTTCCAGAGCTAT+GGG | 0.495371 | 4_2:-48031026 | Msa0603480:CDS |
| GACCACTTACCGCAACTGTA+TGG | 0.497596 | 4_2:+48031703 | None:intergenic |
| CGCATGTCCCGTGTCTGCAT+TGG | 0.498454 | 4_2:+48032347 | None:intergenic |
| ATGCCCTTGAGAACAGGGTC+TGG | 0.502133 | 4_2:+48032513 | None:intergenic |
| GAGAATGGATTAGAAGGAGA+AGG | 0.512401 | 4_2:+48033789 | None:intergenic |
| GCAAAATGCCCTTGAGAACA+GGG | 0.514850 | 4_2:+48032508 | None:intergenic |
| ACGGAATAAAGAGAGCGTTA+TGG | 0.518091 | 4_2:+48033869 | None:intergenic |
| TAAACCAGACCCTGTTCTCA+AGG | 0.525046 | 4_2:-48032517 | Msa0603480:CDS |
| CCACTATGATTTGTTTGTGG+TGG | 0.525435 | 4_2:-48030925 | Msa0603480:three_prime_UTR |
| AAAAGTGAGCAGCGTTTGAA+CGG | 0.543644 | 4_2:+48033850 | None:intergenic |
| ATTTGAAAAGGCTTTCAAGT+TGG | 0.546736 | 4_2:-48032121 | Msa0603480:CDS |
| AGTAGAGTGCTTAAAAGACT+TGG | 0.547877 | 4_2:-48032324 | Msa0603480:CDS |
| CGCGTTATTCTCATGTATCG+TGG | 0.560771 | 4_2:-48033925 | Msa0603480:five_prime_UTR |
| CACAGTATAAGATATACGGT+TGG | 0.562828 | 4_2:+48030686 | None:intergenic |
| GATGCTGTCAGAGGAATTCA+GGG | 0.563816 | 4_2:+48032263 | None:intergenic |
| GTAAAGTTGTGAAGTCAAGA+TGG | 0.567106 | 4_2:-48033493 | Msa0603480:exon |
| CCACCACAAACAAATCATAG+TGG | 0.568100 | 4_2:+48030925 | None:intergenic |
| ACTTATGGGACAACAATGGC+TGG | 0.571812 | 4_2:-48032829 | Msa0603480:CDS |
| TTAGAAGGAGAAGGAACTAG+GGG | 0.572288 | 4_2:+48033798 | None:intergenic |
| GCTTCAGAAGCTTGGAATGG+AGG | 0.578253 | 4_2:-48032890 | Msa0603480:CDS |
| ATCCGTGCGCAGTACAGGAG+TGG | 0.578313 | 4_2:-48031080 | Msa0603480:CDS |
| ACACCACAAACAAATCATAG+TGG | 0.583279 | 4_2:+48030861 | None:intergenic |
| ATCCACTCCTGTACTGCGCA+CGG | 0.590254 | 4_2:+48031078 | None:intergenic |
| TATGCTTCAGAAGCTTGGAA+TGG | 0.599444 | 4_2:-48032893 | Msa0603480:CDS |
| GTTTCCAAATTTCAGGCTAG+GGG | 0.600658 | 4_2:+48030725 | None:intergenic |
| GCTTGAAATCATCAACTACA+AGG | 0.613118 | 4_2:-48030990 | Msa0603480:CDS |
| TTACAGACAGCTAAACGTCT+GGG | 0.621120 | 4_2:-48031729 | Msa0603480:CDS |
| GTTTAGCTGTCTGTAAATTG+CGG | 0.621197 | 4_2:+48031736 | None:intergenic |
| CAGTATAAGATATACGGTTG+GGG | 0.624453 | 4_2:+48030688 | None:intergenic |
| GGAGCAGAGTAAAGCGATAG+CGG | 0.624788 | 4_2:+48033751 | None:intergenic |
| AGAAGGGATGATGCTGTCAG+AGG | 0.631273 | 4_2:+48032254 | None:intergenic |
| ACGCCGTCCTGATTCTGATA+CGG | 0.633852 | 4_2:-48032187 | Msa0603480:CDS |
| AAACCAGACCCTGTTCTCAA+GGG | 0.634734 | 4_2:-48032516 | Msa0603480:CDS |
| GCTTAAAAGACTTGGACTCG+AGG | 0.655535 | 4_2:-48032316 | Msa0603480:CDS |
| CACTTACCGCAACTGTATGG+AGG | 0.660444 | 4_2:+48031706 | None:intergenic |
| TCTGGGCCTCCATACAGTTG+CGG | 0.662336 | 4_2:-48031712 | Msa0603480:intron |
| CAAGACTTATGGGACAACAA+TGG | 0.663167 | 4_2:-48032833 | Msa0603480:CDS |
| GCTGAAATTCCAGAACTCAA+AGG | 0.664777 | 4_2:+48033080 | None:intergenic |
| GAGTATTCATAATATCAGAG+AGG | 0.717994 | 4_2:-48031044 | Msa0603480:CDS |
| GAAAGCAAGAGAGAATAATG+CGG | 0.721892 | 4_2:+48033730 | None:intergenic |
| GTACCGTATCAGAATCAGGA+CGG | 0.729331 | 4_2:+48032184 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTTGGTAAAT+TGG | - | chr4_2:48031670-48031689 | Msa0603480:intron | 10.0% |
| !!! | TTTAAGAATTAGATTTTAAA+AGG | - | chr4_2:48033121-48033140 | Msa0603480:intron | 10.0% |
| !! | AATCAAGTTATTAAAATATC+TGG | + | chr4_2:48030750-48030769 | None:intergenic | 15.0% |
| !!! | TATACTTTTCAAATTATTGT+CGG | + | chr4_2:48031327-48031346 | None:intergenic | 15.0% |
| !! | TAATTATCAAAAACAAATCA+GGG | + | chr4_2:48031525-48031544 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTTTATGCAAAT+AGG | - | chr4_2:48031893-48031912 | Msa0603480:intron | 15.0% |
| !! | ATCATAAAAAACAAATACAA+TGG | + | chr4_2:48033064-48033083 | None:intergenic | 15.0% |
| !! | TTATGATTTGAAAAGAATTA+AGG | - | chr4_2:48033077-48033096 | Msa0603480:CDS | 15.0% |
| !!! | TTAAAAGGATTACTTTTATT+TGG | - | chr4_2:48033136-48033155 | Msa0603480:intron | 15.0% |
| !!! | AAGTTTTGAATGTTAATTAT+TGG | - | chr4_2:48033233-48033252 | Msa0603480:intron | 15.0% |
| !! | AAATTGAGGAAAAAAACAAA+AGG | + | chr4_2:48031031-48031050 | None:intergenic | 20.0% |
| !! | ATTCATTGTTATATCATGTA+TGG | - | chr4_2:48031260-48031279 | Msa0603480:intron | 20.0% |
| !! | GTAATTATCAAAAACAAATC+AGG | + | chr4_2:48031526-48031545 | None:intergenic | 20.0% |
| !! | TAATAACATTGATACTTGAT+TGG | - | chr4_2:48032209-48032228 | Msa0603480:CDS | 20.0% |
| !! | AATAACATTGATACTTGATT+GGG | - | chr4_2:48032210-48032229 | Msa0603480:CDS | 20.0% |
| !! | TTATATGTAAAAGATACAGA+AGG | + | chr4_2:48032688-48032707 | None:intergenic | 20.0% |
| !! | ATTTATACTCCAAAAAAGAT+AGG | - | chr4_2:48032724-48032743 | Msa0603480:intron | 20.0% |
| !! | TTAACATTCAAAACTTTAAC+AGG | + | chr4_2:48033229-48033248 | None:intergenic | 20.0% |
| !! | AATTCACTTTATATAGTACA+TGG | + | chr4_2:48033507-48033526 | None:intergenic | 20.0% |
| !! | ATTACACAGTATAAGATATA+CGG | + | chr4_2:48033969-48033988 | None:intergenic | 20.0% |
| !! | TTATACTGTGTAATTACTTA+AGG | - | chr4_2:48033975-48033994 | Msa0603480:five_prime_UTR | 20.0% |
| ! | CAGACTTCACAAATTATATA+TGG | + | chr4_2:48030671-48030690 | None:intergenic | 25.0% |
| !! | AACAAGAGACAATCATATTT+TGG | + | chr4_2:48031213-48031232 | None:intergenic | 25.0% |
| ! | AAATATGATTGTCTCTTGTT+CGG | - | chr4_2:48031213-48031232 | Msa0603480:intron | 25.0% |
| ! | CAAACAGCAAAAAATATTGA+AGG | - | chr4_2:48031592-48031611 | Msa0603480:intron | 25.0% |
| !! | GTTAGGTATTTATTTAGAGT+TGG | - | chr4_2:48031713-48031732 | Msa0603480:CDS | 25.0% |
| ! | TATTCGTTATACAAGACTTA+TGG | - | chr4_2:48031804-48031823 | Msa0603480:intron | 25.0% |
| ! | ATTCGTTATACAAGACTTAT+GGG | - | chr4_2:48031805-48031824 | Msa0603480:intron | 25.0% |
| !! | TCTGGTTTAAGTAGATTATA+TGG | + | chr4_2:48032120-48032139 | None:intergenic | 25.0% |
| !!! | AAACTTACCACTTTTCTAAA+AGG | + | chr4_2:48032174-48032193 | None:intergenic | 25.0% |
| !! | TTTTCAAATGCATCTTCAAA+AGG | + | chr4_2:48032516-48032535 | None:intergenic | 25.0% |
| !!! | TTTTGAAGATGCATTTGAAA+AGG | - | chr4_2:48032515-48032534 | Msa0603480:CDS | 25.0% |
| !! | CAAAGTTGATCTATTAAAGA+GGG | + | chr4_2:48032594-48032613 | None:intergenic | 25.0% |
| !! | TCAAAGTTGATCTATTAAAG+AGG | + | chr4_2:48032595-48032614 | None:intergenic | 25.0% |
| ! | TCATTCATCAATAACCATTA+GGG | + | chr4_2:48032970-48032989 | None:intergenic | 25.0% |
| ! | TTCATTCATCAATAACCATT+AGG | + | chr4_2:48032971-48032990 | None:intergenic | 25.0% |
| ACTAGGGGTTTATATAGAAA+AGG | + | chr4_2:48030838-48030857 | None:intergenic | 30.0% | |
| ACATAACAAGCGAAAAATTG+AGG | + | chr4_2:48031045-48031064 | None:intergenic | 30.0% | |
| TTGAATTTATCCACATGTGT+TGG | - | chr4_2:48031354-48031373 | Msa0603480:intron | 30.0% | |
| TGAATTTATCCACATGTGTT+GGG | - | chr4_2:48031355-48031374 | Msa0603480:intron | 30.0% | |
| TTACATTCAGTATCCGTATT+CGG | + | chr4_2:48031413-48031432 | None:intergenic | 30.0% | |
| TATAACGAATAGCACAATTC+AGG | + | chr4_2:48031795-48031814 | None:intergenic | 30.0% | |
| TGTTACATGCTAATTTCACT+TGG | + | chr4_2:48032061-48032080 | None:intergenic | 30.0% | |
| ATCCCTTCTAATGAAAAAGT+TGG | - | chr4_2:48032408-48032427 | Msa0603480:intron | 30.0% | |
| !!! | TGCCAACTTTTTCATTAGAA+GGG | + | chr4_2:48032413-48032432 | None:intergenic | 30.0% |
| ! | ATTTGAAAAGGCTTTCAAGT+TGG | - | chr4_2:48032527-48032546 | Msa0603480:CDS | 30.0% |
| AAAGAGAAGAGCTATTAGAA+AGG | + | chr4_2:48032625-48032644 | None:intergenic | 30.0% | |
| TTTCTAATAGCTCTTCTCTT+TGG | - | chr4_2:48032624-48032643 | Msa0603480:intron | 30.0% | |
| ! | TGCTTGTCAATTGATAACTA+AGG | + | chr4_2:48032763-48032782 | None:intergenic | 30.0% |
| TTAGTTATCAATTGACAAGC+AGG | - | chr4_2:48032762-48032781 | Msa0603480:intron | 30.0% | |
| TTTGATTGTATAGGAGCAAA+GGG | + | chr4_2:48033177-48033196 | None:intergenic | 30.0% | |
| !! | TTTTGATTGTATAGGAGCAA+AGG | + | chr4_2:48033178-48033197 | None:intergenic | 30.0% |
| ATAAGTTACATTCAACTGAC+TGG | + | chr4_2:48033201-48033220 | None:intergenic | 30.0% | |
| ! | CGATTCCTTTTTCTTTTGTT+CGG | - | chr4_2:48033261-48033280 | Msa0603480:intron | 30.0% |
| CCACATATTAAAGAGCAATT+CGG | - | chr4_2:48033349-48033368 | Msa0603480:intron | 30.0% | |
| GAGTATTCATAATATCAGAG+AGG | - | chr4_2:48033604-48033623 | Msa0603480:intron | 30.0% | |
| !! | TATCCACTATGATTTGTTTG+TGG | - | chr4_2:48033720-48033739 | Msa0603480:five_prime_UTR | 30.0% |
| !! | TATCCACTATGATTTGTTTG+TGG | - | chr4_2:48033720-48033739 | Msa0603480:five_prime_UTR | 30.0% |
| TCACATTGTTTCCAAATTTC+AGG | + | chr4_2:48033933-48033952 | None:intergenic | 30.0% | |
| ACAGTATAAGATATACGGTT+GGG | + | chr4_2:48033964-48033983 | None:intergenic | 30.0% | |
| ATTAGAAGGAGAAGGAACTA+GGG | + | chr4_2:48030854-48030873 | None:intergenic | 35.0% | |
| !! | ATAGTGGAGAATGGATTAGA+AGG | + | chr4_2:48030868-48030887 | None:intergenic | 35.0% |
| GAAAGCAAGAGAGAATAATG+CGG | + | chr4_2:48030921-48030940 | None:intergenic | 35.0% | |
| GTAAAGTTGTGAAGTCAAGA+TGG | - | chr4_2:48031155-48031174 | Msa0603480:intron | 35.0% | |
| TGTGAAGTCAAGATGGAAAA+CGG | - | chr4_2:48031162-48031181 | Msa0603480:intron | 35.0% | |
| !!! | GAGACAATCATATTTTGGCT+TGG | + | chr4_2:48031208-48031227 | None:intergenic | 35.0% |
| TTATATCATGTATGGAGCAC+TGG | - | chr4_2:48031268-48031287 | Msa0603480:intron | 35.0% | |
| CTGAATGTAATCACGTATGT+TGG | - | chr4_2:48031423-48031442 | Msa0603480:intron | 35.0% | |
| TCAAAATCATGTGTCAGTGT+TGG | + | chr4_2:48031452-48031471 | None:intergenic | 35.0% | |
| ! | ACACTTTATCCTTTGAGTTC+TGG | - | chr4_2:48031559-48031578 | Msa0603480:intron | 35.0% |
| TGAAGTTGAAGCATGAAGTT+AGG | - | chr4_2:48031696-48031715 | Msa0603480:intron | 35.0% | |
| !! | AAGCTTGCCTTTTAGAAAAG+TGG | - | chr4_2:48032164-48032183 | Msa0603480:CDS | 35.0% |
| AACATTGATACTTGATTGGG+AGG | - | chr4_2:48032213-48032232 | Msa0603480:CDS | 35.0% | |
| CATTGGTAAAAAGCTGCAAA+AGG | + | chr4_2:48032287-48032306 | None:intergenic | 35.0% | |
| ! | AGTAGAGTGCTTAAAAGACT+TGG | - | chr4_2:48032324-48032343 | Msa0603480:CDS | 35.0% |
| !!! | CTGCCAACTTTTTCATTAGA+AGG | + | chr4_2:48032414-48032433 | None:intergenic | 35.0% |
| GCATTCTTACTGTTCTTTGA+GGG | + | chr4_2:48032563-48032582 | None:intergenic | 35.0% | |
| TGCATTCTTACTGTTCTTTG+AGG | + | chr4_2:48032564-48032583 | None:intergenic | 35.0% | |
| !!! | GCATCATGTCCTATCTTTTT+TGG | + | chr4_2:48032736-48032755 | None:intergenic | 35.0% |
| GTTTAGCTGTCTGTAAATTG+CGG | + | chr4_2:48032915-48032934 | None:intergenic | 35.0% | |
| !!! | CTGACTGGTTTTGATTGTAT+AGG | + | chr4_2:48033186-48033205 | None:intergenic | 35.0% |
| GGTTTCCGAACAAAAGAAAA+AGG | + | chr4_2:48033269-48033288 | None:intergenic | 35.0% | |
| ! | GGAAACCAGTAAGGTTTTTA+AGG | - | chr4_2:48033282-48033301 | Msa0603480:intron | 35.0% |
| TGACACCTTAAAAACCTTAC+TGG | + | chr4_2:48033290-48033309 | None:intergenic | 35.0% | |
| CCGAATTGCTCTTTAATATG+TGG | + | chr4_2:48033352-48033371 | None:intergenic | 35.0% | |
| GCTTGAAATCATCAACTACA+AGG | - | chr4_2:48033658-48033677 | Msa0603480:intron | 35.0% | |
| ACACCACAAACAAATCATAG+TGG | + | chr4_2:48033790-48033809 | None:intergenic | 35.0% | |
| TGTTTCCAAATTTCAGGCTA+GGG | + | chr4_2:48033927-48033946 | None:intergenic | 35.0% | |
| TTGTTTCCAAATTTCAGGCT+AGG | + | chr4_2:48033928-48033947 | None:intergenic | 35.0% | |
| CAGTATAAGATATACGGTTG+GGG | + | chr4_2:48033963-48033982 | None:intergenic | 35.0% | |
| CACAGTATAAGATATACGGT+TGG | + | chr4_2:48033965-48033984 | None:intergenic | 35.0% | |
| !! | ACGGAATAAAGAGAGCGTTA+TGG | + | chr4_2:48030782-48030801 | None:intergenic | 40.0% |
| AAAAGTGAGCAGCGTTTGAA+CGG | + | chr4_2:48030801-48030820 | None:intergenic | 40.0% | |
| TTAGAAGGAGAAGGAACTAG+GGG | + | chr4_2:48030853-48030872 | None:intergenic | 40.0% | |
| GATTAGAAGGAGAAGGAACT+AGG | + | chr4_2:48030855-48030874 | None:intergenic | 40.0% | |
| !! | GAGAATGGATTAGAAGGAGA+AGG | + | chr4_2:48030862-48030881 | None:intergenic | 40.0% |
| !! | AGAGAAGAGATAGTGGAGAA+TGG | + | chr4_2:48030877-48030896 | None:intergenic | 40.0% |
| GTGAAGTCAAGATGGAAAAC+GGG | - | chr4_2:48031163-48031182 | Msa0603480:intron | 40.0% | |
| !!! | ATTTTGGCTTGGAAACTTCC+TGG | + | chr4_2:48031197-48031216 | None:intergenic | 40.0% |
| GTATATGATCCCAACACATG+TGG | + | chr4_2:48031367-48031386 | None:intergenic | 40.0% | |
| GCTGAAATTCCAGAACTCAA+AGG | + | chr4_2:48031571-48031590 | None:intergenic | 40.0% | |
| GAGTATATGCTTCAGAAGCT+TGG | - | chr4_2:48031750-48031769 | Msa0603480:CDS | 40.0% | |
| TATGCTTCAGAAGCTTGGAA+TGG | - | chr4_2:48031755-48031774 | Msa0603480:CDS | 40.0% | |
| CAAGACTTATGGGACAACAA+TGG | - | chr4_2:48031815-48031834 | Msa0603480:intron | 40.0% | |
| TTGACTACAGCGACTTTCAT+AGG | - | chr4_2:48031972-48031991 | Msa0603480:intron | 40.0% | |
| !!! | GTGTTGAGCAGTTTTGTTCA+TGG | - | chr4_2:48032088-48032107 | Msa0603480:intron | 40.0% |
| ! | GCTTTTTACCAATGCAGACA+CGG | - | chr4_2:48032293-48032312 | Msa0603480:CDS | 40.0% |
| ! | CTTTTTACCAATGCAGACAC+GGG | - | chr4_2:48032294-48032313 | Msa0603480:CDS | 40.0% |
| TCAAAAGGTTTGCAGACAAC+TGG | + | chr4_2:48032501-48032520 | None:intergenic | 40.0% | |
| TTACTCCTCCAGACATGTTA+TGG | - | chr4_2:48032812-48032831 | Msa0603480:intron | 40.0% | |
| GTTTGTCACCATAACATGTC+TGG | + | chr4_2:48032823-48032842 | None:intergenic | 40.0% | |
| GTCATCGAAGAACAACTGAA+AGG | + | chr4_2:48032887-48032906 | None:intergenic | 40.0% | |
| TTTACAGACAGCTAAACGTC+TGG | - | chr4_2:48032918-48032937 | Msa0603480:intron | 40.0% | |
| TTACAGACAGCTAAACGTCT+GGG | - | chr4_2:48032919-48032938 | Msa0603480:intron | 40.0% | |
| ! | CTTTTGTTCGGAAACCAGTA+AGG | - | chr4_2:48033273-48033292 | Msa0603480:intron | 40.0% |
| CCACCACAAACAAATCATAG+TGG | + | chr4_2:48033726-48033745 | None:intergenic | 40.0% | |
| !! | CCACTATGATTTGTTTGTGG+TGG | - | chr4_2:48033723-48033742 | Msa0603480:five_prime_UTR | 40.0% |
| ! | TGGTGGTGTCTTTAGTATGT+TGG | - | chr4_2:48033740-48033759 | Msa0603480:five_prime_UTR | 40.0% |
| GTTTCCAAATTTCAGGCTAG+GGG | + | chr4_2:48033926-48033945 | None:intergenic | 40.0% | |
| CGCGTTATTCTCATGTATCG+TGG | - | chr4_2:48030723-48030742 | Msa0603480:three_prime_UTR | 45.0% | |
| ! | ATAGCGGAGAGAAGAGATAG+TGG | + | chr4_2:48030884-48030903 | None:intergenic | 45.0% |
| CTCTCTCTCTCTCTCATTTC+TGG | - | chr4_2:48030988-48031007 | Msa0603480:CDS | 45.0% | |
| GGAAAACGGGCATAAATTCC+AGG | - | chr4_2:48031176-48031195 | Msa0603480:intron | 45.0% | |
| GGTAATGATTTACCACCCTG+TGG | - | chr4_2:48031613-48031632 | Msa0603480:intron | 45.0% | |
| TCAAATGTGGACAGACCACA+GGG | + | chr4_2:48031631-48031650 | None:intergenic | 45.0% | |
| TGTGGTCTGTCCACATTTGA+GGG | - | chr4_2:48031631-48031650 | Msa0603480:intron | 45.0% | |
| CACATTCAAGCCCTCAAATG+TGG | + | chr4_2:48031644-48031663 | None:intergenic | 45.0% | |
| ACTTATGGGACAACAATGGC+TGG | - | chr4_2:48031819-48031838 | Msa0603480:intron | 45.0% | |
| !! | GACAACAATGGCTGGTCTTA+GGG | - | chr4_2:48031827-48031846 | Msa0603480:intron | 45.0% |
| ! | ATTTTCTCTCGTCCATTGCC+AGG | - | chr4_2:48031934-48031953 | Msa0603480:intron | 45.0% |
| TAAACCAGACCCTGTTCTCA+AGG | - | chr4_2:48032131-48032150 | Msa0603480:CDS | 45.0% | |
| AAACCAGACCCTGTTCTCAA+GGG | - | chr4_2:48032132-48032151 | Msa0603480:CDS | 45.0% | |
| GCAAAATGCCCTTGAGAACA+GGG | + | chr4_2:48032143-48032162 | None:intergenic | 45.0% | |
| TGCAAAATGCCCTTGAGAAC+AGG | + | chr4_2:48032144-48032163 | None:intergenic | 45.0% | |
| GCTTAAAAGACTTGGACTCG+AGG | - | chr4_2:48032332-48032351 | Msa0603480:CDS | 45.0% | |
| GATGCTGTCAGAGGAATTCA+GGG | + | chr4_2:48032388-48032407 | None:intergenic | 45.0% | |
| TGATGCTGTCAGAGGAATTC+AGG | + | chr4_2:48032389-48032408 | None:intergenic | 45.0% | |
| GTACCGTATCAGAATCAGGA+CGG | + | chr4_2:48032467-48032486 | None:intergenic | 45.0% | |
| !! | GGAAGTACCGTATCAGAATC+AGG | + | chr4_2:48032471-48032490 | None:intergenic | 45.0% |
| TTGCAGACAACTGGTGTCTT+TGG | + | chr4_2:48032492-48032511 | None:intergenic | 45.0% | |
| TGTCACCATAACATGTCTGG+AGG | + | chr4_2:48032820-48032839 | None:intergenic | 45.0% | |
| TCTAATTGCCACATCGATGC+AGG | - | chr4_2:48033538-48033557 | Msa0603480:intron | 45.0% | |
| !! | AGAGGCATTTCCAGAGCTAT+GGG | - | chr4_2:48033622-48033641 | Msa0603480:intron | 45.0% |
| ATCACCCCTAGCCTGAAATT+TGG | - | chr4_2:48033919-48033938 | Msa0603480:five_prime_UTR | 45.0% | |
| !! | TGTATATAATTATTATTATT+TGG | - | chr4_2:48031662-48031681 | Msa0603480:intron | 5.0% |
| !! | AAATATAAAAAAAAAACAAA+AGG | + | chr4_2:48032022-48032041 | None:intergenic | 5.0% |
| !!! | CGCTGCTCACTTTTTTGCGT+CGG | - | chr4_2:48030807-48030826 | Msa0603480:three_prime_UTR | 50.0% |
| GGAGCAGAGTAAAGCGATAG+CGG | + | chr4_2:48030900-48030919 | None:intergenic | 50.0% | |
| CTGGCACAGACAATAGACAC+CGG | - | chr4_2:48031287-48031306 | Msa0603480:intron | 50.0% | |
| !! | GTCGGTGTCAGTGTCATATC+CGG | + | chr4_2:48031309-48031328 | None:intergenic | 50.0% |
| CGTGTGTCAGACACCGAATA+CGG | - | chr4_2:48031397-48031416 | Msa0603480:intron | 50.0% | |
| CTCAAATGTGGACAGACCAC+AGG | + | chr4_2:48031632-48031651 | None:intergenic | 50.0% | |
| CTGTGGTCTGTCCACATTTG+AGG | - | chr4_2:48031630-48031649 | Msa0603480:intron | 50.0% | |
| GCTTCAGAAGCTTGGAATGG+AGG | - | chr4_2:48031758-48031777 | Msa0603480:CDS | 50.0% | |
| !! | GGACAACAATGGCTGGTCTT+AGG | - | chr4_2:48031826-48031845 | Msa0603480:intron | 50.0% |
| CATTGCCAGGCAATTGGCTA+CGG | - | chr4_2:48031947-48031966 | Msa0603480:intron | 50.0% | |
| AGAAGGGATGATGCTGTCAG+AGG | + | chr4_2:48032397-48032416 | None:intergenic | 50.0% | |
| ACGCCGTCCTGATTCTGATA+CGG | - | chr4_2:48032461-48032480 | Msa0603480:intron | 50.0% | |
| CACTTACCGCAACTGTATGG+AGG | + | chr4_2:48032945-48032964 | None:intergenic | 50.0% | |
| CTCCATACAGTTGCGGTAAG+TGG | - | chr4_2:48032943-48032962 | Msa0603480:intron | 50.0% | |
| GACCACTTACCGCAACTGTA+TGG | + | chr4_2:48032948-48032967 | None:intergenic | 50.0% | |
| TTGCGGTAAGTGGTCCCTAA+TGG | - | chr4_2:48032953-48032972 | Msa0603480:intron | 50.0% | |
| ATTGCCACATCGATGCAGGT+TGG | - | chr4_2:48033542-48033561 | Msa0603480:intron | 50.0% | |
| ! | TGTACCAACCTGCATCGATG+TGG | + | chr4_2:48033549-48033568 | None:intergenic | 50.0% |
| !! | GAGAGGCATTTCCAGAGCTA+TGG | - | chr4_2:48033621-48033640 | Msa0603480:intron | 50.0% |
| ! | TCGGTGTCTGACACACGTCT+TGG | + | chr4_2:48031394-48031413 | None:intergenic | 55.0% |
| AATGTGGACAGACCACAGGG+TGG | + | chr4_2:48031628-48031647 | None:intergenic | 55.0% | |
| CTCGTCCATTGCCAGGCAAT+TGG | - | chr4_2:48031941-48031960 | Msa0603480:intron | 55.0% | |
| CGTAGCCAATTGCCTGGCAA+TGG | + | chr4_2:48031949-48031968 | None:intergenic | 55.0% | |
| CAAAGCCGTAGCCAATTGCC+TGG | + | chr4_2:48031955-48031974 | None:intergenic | 55.0% | |
| ATGCCCTTGAGAACAGGGTC+TGG | + | chr4_2:48032138-48032157 | None:intergenic | 55.0% | |
| TCTGGGCCTCCATACAGTTG+CGG | - | chr4_2:48032936-48032955 | Msa0603480:intron | 55.0% | |
| ATCCACTCCTGTACTGCGCA+CGG | + | chr4_2:48033573-48033592 | None:intergenic | 55.0% | |
| !! | TCGTCGACTTCCCATAGCTC+TGG | + | chr4_2:48033635-48033654 | None:intergenic | 55.0% |
| CGCATGTCCCGTGTCTGCAT+TGG | + | chr4_2:48032304-48032323 | None:intergenic | 60.0% | |
| GGTACATCCGTGCGCAGTAC+AGG | - | chr4_2:48033563-48033582 | Msa0603480:intron | 60.0% | |
| ATCCGTGCGCAGTACAGGAG+TGG | - | chr4_2:48033568-48033587 | Msa0603480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 48030658 | 48034012 | 48030658 | ID=Msa0603480;Name=Msa0603480 |
| chr4_2 | mRNA | 48030658 | 48034012 | 48030658 | ID=Msa0603480-mRNA-1;Parent=Msa0603480;Name=Msa0603480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=326|0.85|1|1|0.85|0.75|8|303|268 |
| chr4_2 | exon | 48030658 | 48031110 | 48030658 | ID=Msa0603480-mRNA-1:exon:11041;Parent=Msa0603480-mRNA-1 |
| chr4_2 | exon | 48031713 | 48031778 | 48031713 | ID=Msa0603480-mRNA-1:exon:11040;Parent=Msa0603480-mRNA-1 |
| chr4_2 | exon | 48032098 | 48032376 | 48032098 | ID=Msa0603480-mRNA-1:exon:11039;Parent=Msa0603480-mRNA-1 |
| chr4_2 | exon | 48032485 | 48032571 | 48032485 | ID=Msa0603480-mRNA-1:exon:11038;Parent=Msa0603480-mRNA-1 |
| chr4_2 | exon | 48032822 | 48032919 | 48032822 | ID=Msa0603480-mRNA-1:exon:11037;Parent=Msa0603480-mRNA-1 |
| chr4_2 | exon | 48033057 | 48033122 | 48033057 | ID=Msa0603480-mRNA-1:exon:11036;Parent=Msa0603480-mRNA-1 |
| chr4_2 | exon | 48033436 | 48033519 | 48033436 | ID=Msa0603480-mRNA-1:exon:11035;Parent=Msa0603480-mRNA-1 |
| chr4_2 | exon | 48033710 | 48034012 | 48033710 | ID=Msa0603480-mRNA-1:exon:11034;Parent=Msa0603480-mRNA-1 |
| chr4_2 | five_prime_UTR | 48033710 | 48034012 | 48033710 | ID=Msa0603480-mRNA-1:five_prime_utr;Parent=Msa0603480-mRNA-1 |
| chr4_2 | five_prime_UTR | 48033497 | 48033519 | 48033497 | ID=Msa0603480-mRNA-1:five_prime_utr;Parent=Msa0603480-mRNA-1 |
| chr4_2 | CDS | 48033436 | 48033496 | 48033436 | ID=Msa0603480-mRNA-1:cds;Parent=Msa0603480-mRNA-1 |
| chr4_2 | CDS | 48033057 | 48033122 | 48033057 | ID=Msa0603480-mRNA-1:cds;Parent=Msa0603480-mRNA-1 |
| chr4_2 | CDS | 48032822 | 48032919 | 48032822 | ID=Msa0603480-mRNA-1:cds;Parent=Msa0603480-mRNA-1 |
| chr4_2 | CDS | 48032485 | 48032571 | 48032485 | ID=Msa0603480-mRNA-1:cds;Parent=Msa0603480-mRNA-1 |
| chr4_2 | CDS | 48032098 | 48032376 | 48032098 | ID=Msa0603480-mRNA-1:cds;Parent=Msa0603480-mRNA-1 |
| chr4_2 | CDS | 48031713 | 48031778 | 48031713 | ID=Msa0603480-mRNA-1:cds;Parent=Msa0603480-mRNA-1 |
| chr4_2 | CDS | 48030961 | 48031110 | 48030961 | ID=Msa0603480-mRNA-1:cds;Parent=Msa0603480-mRNA-1 |
| chr4_2 | three_prime_UTR | 48030658 | 48030960 | 48030658 | ID=Msa0603480-mRNA-1:three_prime_utr;Parent=Msa0603480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
