Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459980 | XP_003606690.1 | 91.892 | 296 | 9 | 1 | 1 | 296 | 1 | 281 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459980 | sp|Q09893|YAI5_SCHPO | 24.528 | 265 | 143 | 8 | 18 | 274 | 8 | 223 | 1.03e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459980 | G7JUV7 | 91.892 | 296 | 9 | 1 | 1 | 296 | 1 | 281 | 0.0 | 559 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603480 | Msa1459980 | 0.851937 | 6.408843e-61 | -8.615850e-47 |
| Msa1339030 | Msa1459980 | 0.892871 | 1.064428e-74 | -8.615850e-47 |
| Msa0268090 | Msa1459980 | 0.810059 | 1.391490e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459980 | MtrunA17_Chr4g0031841 | 91.892 | 296 | 9 | 1 | 1 | 296 | 1 | 281 | 0.0 | 559 |
| Msa1459980 | MtrunA17_Chr2g0328451 | 69.707 | 307 | 66 | 5 | 1 | 296 | 1 | 291 | 1.58e-150 | 423 |
| Msa1459980 | MtrunA17_Chr7g0238911 | 51.582 | 316 | 118 | 4 | 1 | 296 | 1 | 301 | 3.84e-108 | 316 |
| Msa1459980 | MtrunA17_Chr4g0009921 | 52.740 | 292 | 107 | 4 | 8 | 283 | 9 | 285 | 5.61e-105 | 308 |
| Msa1459980 | MtrunA17_Chr4g0009961 | 50.489 | 307 | 116 | 5 | 11 | 296 | 9 | 300 | 2.14e-100 | 296 |
| Msa1459980 | MtrunA17_Chr1g0193721 | 47.766 | 291 | 105 | 4 | 8 | 296 | 4 | 249 | 7.92e-91 | 270 |
| Msa1459980 | MtrunA17_Chr1g0205581 | 40.299 | 268 | 119 | 6 | 11 | 275 | 5 | 234 | 7.54e-67 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459980 | AT5G59480.4 | 60.554 | 289 | 96 | 3 | 7 | 292 | 7 | 280 | 1.01e-123 | 355 |
| Msa1459980 | AT5G59480.5 | 60.554 | 289 | 96 | 3 | 7 | 292 | 7 | 280 | 1.01e-123 | 355 |
| Msa1459980 | AT5G59480.3 | 60.554 | 289 | 96 | 3 | 7 | 292 | 7 | 280 | 1.01e-123 | 355 |
| Msa1459980 | AT5G59480.1 | 60.554 | 289 | 96 | 3 | 7 | 292 | 7 | 280 | 1.01e-123 | 355 |
| Msa1459980 | AT5G59480.2 | 60.554 | 289 | 95 | 4 | 7 | 292 | 7 | 279 | 1.08e-121 | 350 |
| Msa1459980 | AT5G02230.2 | 55.034 | 298 | 114 | 3 | 1 | 296 | 1 | 280 | 1.14e-104 | 306 |
| Msa1459980 | AT5G02230.1 | 55.034 | 298 | 114 | 3 | 1 | 296 | 1 | 280 | 1.14e-104 | 306 |
| Msa1459980 | AT5G02230.3 | 55.034 | 298 | 114 | 3 | 1 | 296 | 38 | 317 | 5.69e-104 | 306 |
| Msa1459980 | AT5G59490.1 | 50.168 | 297 | 110 | 5 | 6 | 296 | 2 | 266 | 1.65e-88 | 265 |
| Msa1459980 | AT3G62040.1 | 49.020 | 255 | 84 | 5 | 45 | 296 | 1 | 212 | 1.47e-77 | 235 |
| Msa1459980 | AT5G59490.2 | 50.617 | 243 | 88 | 3 | 6 | 248 | 2 | 212 | 5.33e-71 | 219 |
| Msa1459980 | AT2G32150.1 | 38.846 | 260 | 122 | 3 | 16 | 275 | 7 | 229 | 6.90e-65 | 204 |
| Msa1459980 | AT2G32150.2 | 40.171 | 234 | 103 | 4 | 16 | 249 | 7 | 203 | 3.04e-56 | 181 |
| Msa1459980 | AT2G32150.3 | 43.147 | 197 | 90 | 3 | 16 | 212 | 7 | 181 | 5.66e-53 | 171 |
Find 90 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCCCTAGCTTGAAATT+TGG | 0.187101 | tig0040569:-165 | Msa1459980:three_prime_UTR |
| AACAAGAGACAATCATATTT+TGG | 0.202288 | tig0040569:+2928 | Msa1459980:intergenic |
| GGACAACAATGGCTGGTCTT+AGG | 0.241770 | tig0040569:-2304 | Msa1459980:CDS |
| TATTCATTATACAAGACTTA+TGG | 0.249582 | tig0040569:-2326 | Msa1459980:CDS |
| TGATGCTGTCAGAGGAATTC+AGG | 0.289738 | tig0040569:+1730 | Msa1459980:intergenic |
| ACACTTTATCCTTTGAGTTC+TGG | 0.296418 | tig0040569:-2571 | Msa1459980:CDS |
| TTGCAGACAACTGGTGTCTT+TGG | 0.298955 | tig0040569:+1627 | Msa1459980:intergenic |
| TGCAAAATGCCCTTGAGAAC+AGG | 0.303805 | tig0040569:+1982 | Msa1459980:intergenic |
| TTGACTACAGCGACTTTCAT+AGG | 0.319658 | tig0040569:-2159 | Msa1459980:intron |
| AATCAAGTTATTAAAATATC+TGG | 0.323170 | tig0040569:+3446 | Msa1459980:intergenic |
| TCTGGTTTAAGTAGATTATA+TGG | 0.325088 | tig0040569:+2006 | Msa1459980:intergenic |
| TGCACTCTTACTGTTCTTTG+AGG | 0.345160 | tig0040569:+1555 | Msa1459980:intergenic |
| TATAATGAATAGCACAATTC+AGG | 0.347289 | tig0040569:+2338 | Msa1459980:intergenic |
| TTATACTGTGTAATTACTTA+AGG | 0.365491 | tig0040569:-109 | Msa1459980:three_prime_UTR |
| GGAGTGGAGAATGGATTAGA+AGG | 0.366054 | tig0040569:+3328 | Msa1459980:intergenic |
| ATTCATTATACAAGACTTAT+GGG | 0.366669 | tig0040569:-2325 | Msa1459980:CDS |
| AGAGATAGTGGAGTGGAGAA+TGG | 0.371625 | tig0040569:+3319 | Msa1459980:intergenic |
| CTCGTCCATTGCCAGGCAAT+TGG | 0.388849 | tig0040569:-2190 | Msa1459980:intron |
| CAGACTTCACAAATTATGTA+TGG | 0.396282 | tig0040569:+3525 | Msa1459980:intergenic |
| GACAACAATGGCTGGTCTTA+GGG | 0.420457 | tig0040569:-2303 | Msa1459980:intron |
| TCAAAAGGTTTGCAGACAAC+TGG | 0.421037 | tig0040569:+1618 | Msa1459980:intergenic |
| AAATATGATTGTCTCTTGTT+CGG | 0.422018 | tig0040569:-2925 | Msa1459980:intron |
| TTGTTTCCAAATTTCAAGCT+AGG | 0.422678 | tig0040569:+159 | Msa1459980:intergenic |
| ACTTAAGGCATTATGCTTCA+AGG | 0.435396 | tig0040569:-94 | Msa1459980:three_prime_UTR |
| TATCCACTATGATTTGTTTG+TGG | 0.446238 | tig0040569:-314 | Msa1459980:three_prime_UTR |
| GGAAGTACCGTATCAGAATC+AGG | 0.448802 | tig0040569:+1648 | Msa1459980:intergenic |
| GTTTGTCACCATACCATGTC+TGG | 0.455339 | tig0040569:+1293 | Msa1459980:intergenic |
| CATTGCCAGGCAATTGGCTA+TGG | 0.457299 | tig0040569:-2184 | Msa1459980:intron |
| TGTTTCCAAATTTCAAGCTA+GGG | 0.458227 | tig0040569:+160 | Msa1459980:intergenic |
| TGTGAAGTCAAGATGGAAAA+CGG | 0.461158 | tig0040569:-2976 | Msa1459980:exon |
| ACGAGGGGTTTATATAGAAA+AGG | 0.463251 | tig0040569:+3358 | Msa1459980:intergenic |
| GGAAAACGGGCATAAATTCC+AGG | 0.464067 | tig0040569:-2962 | Msa1459980:CDS |
| ACAGTATAAGAGATACGGTT+GGG | 0.465075 | tig0040569:+123 | Msa1459980:intergenic |
| TTTACAGACAGCTAAACGTC+TGG | 0.475885 | tig0040569:-1196 | Msa1459980:CDS |
| GAGAGGCATTTCCAGAGCTA+TGG | 0.475952 | tig0040569:-466 | Msa1459980:CDS |
| GGTACATCCGTGCGCAGTAC+AGG | 0.476231 | tig0040569:-524 | Msa1459980:CDS |
| GCACTCTTACTGTTCTTTGA+GGG | 0.478925 | tig0040569:+1556 | Msa1459980:intergenic |
| GTGAAGTCAAGATGGAAAAC+GGG | 0.482586 | tig0040569:-2975 | Msa1459980:exon |
| GAGTATATGCTTCAGAAGCT+TGG | 0.484652 | tig0040569:-2380 | Msa1459980:CDS |
| TCGTCGACTTCCCATAGCTC+TGG | 0.485678 | tig0040569:+455 | Msa1459980:intergenic |
| ATAGCGGAGAGAAGAGATAG+TGG | 0.492445 | tig0040569:+3307 | Msa1459980:intergenic |
| AGAGGCATTTCCAGAGCTAT+GGG | 0.495371 | tig0040569:-465 | Msa1459980:CDS |
| GACCACTTACCGCAACTGTA+TGG | 0.497596 | tig0040569:+1169 | Msa1459980:intergenic |
| CGCATGTCCCGTGTCTGCAT+TGG | 0.498454 | tig0040569:+1815 | Msa1459980:intergenic |
| ATGCCCTTGAGAACAGGGTC+TGG | 0.502133 | tig0040569:+1988 | Msa1459980:intergenic |
| GAGAATGGATTAGAAGGAGA+AGG | 0.512401 | tig0040569:+3334 | Msa1459980:intergenic |
| GCAAAATGCCCTTGAGAACA+GGG | 0.514850 | tig0040569:+1983 | Msa1459980:intergenic |
| ACGGAATAAAGAGAGCGTTA+TGG | 0.518091 | tig0040569:+3414 | Msa1459980:intergenic |
| TAAACCAGACCCTGTTCTCA+AGG | 0.525046 | tig0040569:-1992 | Msa1459980:CDS |
| TATCCACTATGATATGTTTG+TGG | 0.531842 | tig0040569:-367 | Msa1459980:three_prime_UTR |
| ATTTGAAAAGGCTTTCAAGT+TGG | 0.546736 | tig0040569:-1589 | Msa1459980:CDS |
| AGTAGAGTGCTTAAAAGACT+TGG | 0.547877 | tig0040569:-1792 | Msa1459980:CDS |
| GATTAGAAGGAGAAGGAACG+AGG | 0.554040 | tig0040569:+3341 | Msa1459980:intergenic |
| CGCGTTATTCTCATGTATCG+TGG | 0.560771 | tig0040569:-3470 | Msa1459980:five_prime_UTR |
| ATTAGAAGGAGAAGGAACGA+GGG | 0.560878 | tig0040569:+3342 | Msa1459980:intergenic |
| GATGCTGTCAGAGGAATTCA+GGG | 0.563816 | tig0040569:+1731 | Msa1459980:intergenic |
| GTAAAGTTGTGAAGTCAAGA+TGG | 0.567106 | tig0040569:-2983 | Msa1459980:exon |
| AAAAGTGAACAGCGTTTGAA+CGG | 0.570714 | tig0040569:+3395 | Msa1459980:intergenic |
| ACTTATGGGACAACAATGGC+TGG | 0.571812 | tig0040569:-2311 | Msa1459980:CDS |
| TGTTCTTACTCCTCCAGACA+TGG | 0.574131 | tig0040569:-1306 | Msa1459980:intron |
| GCTTCAGAAGCTTGGAATGG+AGG | 0.578253 | tig0040569:-2372 | Msa1459980:CDS |
| ATCCGTGCGCAGTACAGGAG+TGG | 0.578313 | tig0040569:-519 | Msa1459980:CDS |
| ACACCACAAACAAATCATAG+TGG | 0.583279 | tig0040569:+311 | Msa1459980:intergenic |
| GTTTCCAAATTTCAAGCTAG+GGG | 0.583761 | tig0040569:+161 | Msa1459980:intergenic |
| ATTACACAGTATAAGAGATA+CGG | 0.585407 | tig0040569:+118 | Msa1459980:intergenic |
| ATCCACTCCTGTACTGCGCA+CGG | 0.590254 | tig0040569:+517 | Msa1459980:intergenic |
| CCACCACAAACATATCATAG+TGG | 0.596866 | tig0040569:+364 | Msa1459980:intergenic |
| TATGCTTCAGAAGCTTGGAA+TGG | 0.599444 | tig0040569:-2375 | Msa1459980:CDS |
| AAGCCGTCCTGATTCTGATA+CGG | 0.603306 | tig0040569:-1655 | Msa1459980:CDS |
| CCACTATGATATGTTTGTGG+TGG | 0.604509 | tig0040569:-364 | Msa1459980:three_prime_UTR |
| CACAGTATAAGAGATACGGT+TGG | 0.607525 | tig0040569:+122 | Msa1459980:intergenic |
| TTAGAAGGAGAAGGAACGAG+GGG | 0.610775 | tig0040569:+3343 | Msa1459980:intergenic |
| GCATGAAATCATCAACTACA+AGG | 0.615601 | tig0040569:-429 | Msa1459980:CDS |
| TTACAGACAGCTAAACGTCT+GGG | 0.621120 | tig0040569:-1195 | Msa1459980:CDS |
| GTTTAGCTGTCTGTAAATTG+CGG | 0.621197 | tig0040569:+1202 | Msa1459980:intergenic |
| GGAGCAGAGTAAAGCGATAG+CGG | 0.624788 | tig0040569:+3291 | Msa1459980:intergenic |
| AGAAGGGATGATGCTGTCAG+AGG | 0.631273 | tig0040569:+1722 | Msa1459980:intergenic |
| GGAGAGAAGAGATAGTGGAG+TGG | 0.633452 | tig0040569:+3312 | Msa1459980:intergenic |
| AAACCAGACCCTGTTCTCAA+GGG | 0.634734 | tig0040569:-1991 | Msa1459980:CDS |
| TCATAGTGGATAAGCTTGTG+AGG | 0.636592 | tig0040569:+325 | Msa1459980:intergenic |
| GCTTAAAAGACTTGGACTCG+AGG | 0.655535 | tig0040569:-1784 | Msa1459980:CDS |
| CAGTATAAGAGATACGGTTG+GGG | 0.657255 | tig0040569:+124 | Msa1459980:intergenic |
| CACTTACCGCAACTGTATGG+AGG | 0.660444 | tig0040569:+1172 | Msa1459980:intergenic |
| TCTGGGCCTCCATACAGTTG+CGG | 0.662336 | tig0040569:-1178 | Msa1459980:intron |
| CAAGACTTATGGGACAACAA+TGG | 0.663167 | tig0040569:-2315 | Msa1459980:CDS |
| GCTGAAATTCCAGAACTCAA+AGG | 0.664777 | tig0040569:+2562 | Msa1459980:intergenic |
| TGTCACCATACCATGTCTGG+AGG | 0.684305 | tig0040569:+1296 | Msa1459980:intergenic |
| GTACCGTATCAGAATCAGGA+CGG | 0.706191 | tig0040569:+1652 | Msa1459980:intergenic |
| GAGTATTCATAATATCAGAG+AGG | 0.717994 | tig0040569:-483 | Msa1459980:CDS |
| GAAAGCAAGAGAGAATAATG+CGG | 0.721892 | tig0040569:+3270 | Msa1459970:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTTGGTAAAT+TGG | - | tig0040569:1169-1188 | Msa1459980:intron | 10.0% |
| !! | ATTATAAAAAACAAATACAA+TGG | + | tig0040569:2579-2598 | Msa1459980:intergenic | 10.0% |
| !! | TTATAATTTGAAAAGAATTA+AGG | - | tig0040569:2592-2611 | Msa1459980:intron | 10.0% |
| !!! | TTTAAGAATTAGATTTTAAA+AGG | - | tig0040569:2636-2655 | Msa1459980:intron | 10.0% |
| !! | AATCAAGTTATTAAAATATC+TGG | + | tig0040569:186-205 | Msa1459980:intergenic | 15.0% |
| !!! | ATACTTTTTCAAATTATTGT+CGG | + | tig0040569:818-837 | Msa1459980:intergenic | 15.0% |
| !!! | ACATATTTTTTTATGCAAAT+AGG | - | tig0040569:1391-1410 | Msa1459980:intron | 15.0% |
| !!! | TTAAAAGGATTACTTTTATT+TGG | - | tig0040569:2651-2670 | Msa1459980:intron | 15.0% |
| !!! | AAAGTTTTGAATGTTATTAT+TGG | - | tig0040569:2747-2766 | Msa1459980:intron | 15.0% |
| !! | AAAATGAGGAAAAAAACAAA+AGG | + | tig0040569:494-513 | Msa1459980:intergenic | 20.0% |
| !! | ATTCATTGTTATATCATGTA+TGG | - | tig0040569:751-770 | Msa1459980:intron | 20.0% |
| !! | GTAATTATCAAAAACAAATC+AGG | + | tig0040569:1025-1044 | Msa1459980:intergenic | 20.0% |
| !! | TATTCATTATACAAGACTTA+TGG | - | tig0040569:1303-1322 | Msa1459980:intron | 20.0% |
| !! | ATTCATTATACAAGACTTAT+GGG | - | tig0040569:1304-1323 | Msa1459980:intron | 20.0% |
| !! | ATTGAAAGTAAAACTTGATT+GGG | - | tig0040569:1722-1741 | Msa1459980:CDS | 20.0% |
| !! | AAGTGTTAATCTATTAATGA+GGG | + | tig0040569:2107-2126 | Msa1459980:intergenic | 20.0% |
| !!! | AAAGTGTTAATCTATTAATG+AGG | + | tig0040569:2108-2127 | Msa1459980:intergenic | 20.0% |
| !! | TTTATACTCCAAAAAAAGAT+AGG | - | tig0040569:2240-2259 | Msa1459980:intron | 20.0% |
| !! | ATAACATTCAAAACTTTAAC+AGG | + | tig0040569:2744-2763 | Msa1459980:intergenic | 20.0% |
| !! | AATTCACTTTATATAGTACA+TGG | + | tig0040569:3049-3068 | Msa1459980:intergenic | 20.0% |
| !! | TTATACTGTGTAATTACTTA+AGG | - | tig0040569:3520-3539 | Msa1459980:five_prime_UTR | 20.0% |
| !! | TTCATGAATTTTTGTTGAGA+AGG | - | tig0040569:564-583 | Msa1459980:intron | 25.0% |
| !! | AACAAGAGACAATCATATTT+TGG | + | tig0040569:704-723 | Msa1459980:intergenic | 25.0% |
| ! | AAATATGATTGTCTCTTGTT+CGG | - | tig0040569:704-723 | Msa1459980:intron | 25.0% |
| ! | ACGTCAATTGTATATGTATT+CGG | + | tig0040569:900-919 | Msa1459980:intergenic | 25.0% |
| ! | CAAACAGCAAAAAATATTGA+AGG | - | tig0040569:1091-1110 | Msa1459980:intron | 25.0% |
| !! | GTTAGGTATTTATTTAGAGT+TGG | - | tig0040569:1212-1231 | Msa1459980:CDS | 25.0% |
| ! | TATAATGAATAGCACAATTC+AGG | + | tig0040569:1294-1313 | Msa1459980:intergenic | 25.0% |
| !! | TCTGGTTTAAGTAGATTATA+TGG | + | tig0040569:1626-1645 | Msa1459980:intergenic | 25.0% |
| !!! | AAACTTACCACTTTTCTAAA+AGG | + | tig0040569:1680-1699 | Msa1459980:intergenic | 25.0% |
| ! | CATTGAAAGTAAAACTTGAT+TGG | - | tig0040569:1721-1740 | Msa1459980:CDS | 25.0% |
| !! | TTTTCAAATGCATCTTCAAA+AGG | + | tig0040569:2029-2048 | Msa1459980:intergenic | 25.0% |
| !!! | TTTTGAAGATGCATTTGAAA+AGG | - | tig0040569:2028-2047 | Msa1459980:CDS | 25.0% |
| ! | TTAGATGTAAAAGATACAGA+AGG | + | tig0040569:2203-2222 | Msa1459980:intergenic | 25.0% |
| ! | TCATTCATCAATAACCATTA+GGG | + | tig0040569:2485-2504 | Msa1459980:intergenic | 25.0% |
| ! | TTCATTCATCAATAACCATT+AGG | + | tig0040569:2486-2505 | Msa1459980:intergenic | 25.0% |
| ! | ATAAGTTACATTTAACTGAC+TGG | + | tig0040569:2716-2735 | Msa1459980:intergenic | 25.0% |
| !!! | CGATTCCTTTTTATTTTGTT+CGG | - | tig0040569:2775-2794 | Msa1459980:intron | 25.0% |
| ! | ATTACACAGTATAAGAGATA+CGG | + | tig0040569:3514-3533 | Msa1459980:intergenic | 25.0% |
| CAGACTTCACAAATTATGTA+TGG | + | tig0040569:107-126 | Msa1211830:intergenic | 30.0% | |
| ACATAACAAGCGAAAAAATG+AGG | + | tig0040569:508-527 | Msa1459980:intergenic | 30.0% | |
| TTGAATGTAATCACGTATGT+TGG | - | tig0040569:922-941 | Msa1459980:intron | 30.0% | |
| TGTTACATGCTAATTTCACT+TGG | + | tig0040569:1566-1585 | Msa1459980:intergenic | 30.0% | |
| ATTGGTAAAAAGCTGCAAAA+GGG | + | tig0040569:1799-1818 | Msa1459980:intergenic | 30.0% | |
| ATCCCTTCTAATGAAAAAGT+TGG | - | tig0040569:1921-1940 | Msa1459980:intron | 30.0% | |
| !!! | TGCCAACTTTTTCATTAGAA+GGG | + | tig0040569:1926-1945 | Msa1459980:intergenic | 30.0% |
| ! | ATTTGAAAAGGCTTTCAAGT+TGG | - | tig0040569:2040-2059 | Msa1459980:intron | 30.0% |
| AAAGAGAAGAGCTATTAGAA+AGG | + | tig0040569:2140-2159 | Msa1459980:intergenic | 30.0% | |
| TTTCTAATAGCTCTTCTCTT+TGG | - | tig0040569:2139-2158 | Msa1459980:intron | 30.0% | |
| !!! | CATCATGTCCTATCTTTTTT+TGG | + | tig0040569:2251-2270 | Msa1459980:intergenic | 30.0% |
| ! | TGCTTGTCAATTGATAACTA+AGG | + | tig0040569:2279-2298 | Msa1459980:intergenic | 30.0% |
| TTAGTTATCAATTGACAAGC+AGG | - | tig0040569:2278-2297 | Msa1459980:intron | 30.0% | |
| TTTGATTGTATAGGAGCAAA+GGG | + | tig0040569:2692-2711 | Msa1459980:intergenic | 30.0% | |
| !! | TTTTGATTGTATAGGAGCAA+AGG | + | tig0040569:2693-2712 | Msa1459980:intergenic | 30.0% |
| GGTTTCCGAACAAAATAAAA+AGG | + | tig0040569:2783-2802 | Msa1459980:intergenic | 30.0% | |
| ! | ATTTTGTTCGGAAACCAATT+AGG | - | tig0040569:2787-2806 | Msa1459980:intron | 30.0% |
| ! | GGAAACCAATTAGGTTTTTA+AGG | - | tig0040569:2796-2815 | Msa1459980:intron | 30.0% |
| TGACACCTTAAAAACCTAAT+TGG | + | tig0040569:2804-2823 | Msa1459980:intergenic | 30.0% | |
| CCACATATTAATGAGCAATT+CGG | - | tig0040569:2863-2882 | Msa1459980:intron | 30.0% | |
| GAGTATTCATAATATCAGAG+AGG | - | tig0040569:3146-3165 | Msa1459980:intron | 30.0% | |
| TATCCACTATGATATGTTTG+TGG | - | tig0040569:3262-3281 | Msa1459980:five_prime_UTR | 30.0% | |
| !! | TATCCACTATGATTTGTTTG+TGG | - | tig0040569:3315-3334 | Msa1459980:five_prime_UTR | 30.0% |
| TGTTTCCAAATTTCAAGCTA+GGG | + | tig0040569:3472-3491 | Msa1459980:intergenic | 30.0% | |
| TTGTTTCCAAATTTCAAGCT+AGG | + | tig0040569:3473-3492 | Msa1459980:intergenic | 30.0% | |
| AAAAGTGAACAGCGTTTGAA+CGG | + | tig0040569:237-256 | Msa1459980:intergenic | 35.0% | |
| ACGAGGGGTTTATATAGAAA+AGG | + | tig0040569:274-293 | Msa1459980:intergenic | 35.0% | |
| GAAAGCAAGAGAGAATAATG+CGG | + | tig0040569:362-381 | Msa1459980:intergenic | 35.0% | |
| GTAAAGTTGTGAAGTCAAGA+TGG | - | tig0040569:646-665 | Msa1459980:intron | 35.0% | |
| TGTGAAGTCAAGATGGAAAA+CGG | - | tig0040569:653-672 | Msa1459980:intron | 35.0% | |
| !!! | GAGACAATCATATTTTGGCT+TGG | + | tig0040569:699-718 | Msa1459980:intergenic | 35.0% |
| TTGAATTTAGCCACATGTGT+CGG | - | tig0040569:846-865 | Msa1459980:intron | 35.0% | |
| TCAAAATCATGTGTCAGTGT+TGG | + | tig0040569:951-970 | Msa1459980:intergenic | 35.0% | |
| ! | ACACTTTATCCTTTGAGTTC+TGG | - | tig0040569:1058-1077 | Msa1459980:intron | 35.0% |
| TGAAGTTGAAGCATGAAGTT+AGG | - | tig0040569:1195-1214 | Msa1459980:CDS | 35.0% | |
| !!! | TGTTGAGCAGTTTTGTTCAT+GGG | - | tig0040569:1594-1613 | Msa1459980:CDS | 35.0% |
| !! | AAGCTTGCCTTTTAGAAAAG+TGG | - | tig0040569:1670-1689 | Msa1459980:CDS | 35.0% |
| GAAAGTAAAACTTGATTGGG+AGG | - | tig0040569:1725-1744 | Msa1459980:CDS | 35.0% | |
| CATTGGTAAAAAGCTGCAAA+AGG | + | tig0040569:1800-1819 | Msa1459980:intergenic | 35.0% | |
| ! | AGTAGAGTGCTTAAAAGACT+TGG | - | tig0040569:1837-1856 | Msa1459980:intron | 35.0% |
| !!! | CTGCCAACTTTTTCATTAGA+AGG | + | tig0040569:1927-1946 | Msa1459980:intergenic | 35.0% |
| GTTTAGCTGTCTGTAAATTG+CGG | + | tig0040569:2430-2449 | Msa1459980:intergenic | 35.0% | |
| !!! | CTGACTGGTTTTGATTGTAT+AGG | + | tig0040569:2701-2720 | Msa1459980:intergenic | 35.0% |
| CCGAATTGCTCATTAATATG+TGG | + | tig0040569:2866-2885 | Msa1459980:intergenic | 35.0% | |
| GCATGAAATCATCAACTACA+AGG | - | tig0040569:3200-3219 | Msa1459980:intron | 35.0% | |
| ACACCACAAACAAATCATAG+TGG | + | tig0040569:3321-3340 | Msa1459980:intergenic | 35.0% | |
| GTTTCCAAATTTCAAGCTAG+GGG | + | tig0040569:3471-3490 | Msa1459980:intergenic | 35.0% | |
| ACAGTATAAGAGATACGGTT+GGG | + | tig0040569:3509-3528 | Msa1459980:intergenic | 35.0% | |
| !! | ACGGAATAAAGAGAGCGTTA+TGG | + | tig0040569:218-237 | Msa1459980:intergenic | 40.0% |
| ATTAGAAGGAGAAGGAACGA+GGG | + | tig0040569:290-309 | Msa1459980:intergenic | 40.0% | |
| !! | GAGAATGGATTAGAAGGAGA+AGG | + | tig0040569:298-317 | Msa1459980:intergenic | 40.0% |
| GTGAAGTCAAGATGGAAAAC+GGG | - | tig0040569:654-673 | Msa1459980:intron | 40.0% | |
| !!! | ATTTTGGCTTGGAAACTTCC+TGG | + | tig0040569:688-707 | Msa1459980:intergenic | 40.0% |
| CTCACATAGACAATAGACAC+TGG | - | tig0040569:778-797 | Msa1459980:intron | 40.0% | |
| GCTGAAATTCCAGAACTCAA+AGG | + | tig0040569:1070-1089 | Msa1459980:intergenic | 40.0% | |
| GAGTATATGCTTCAGAAGCT+TGG | - | tig0040569:1249-1268 | Msa1459980:intron | 40.0% | |
| TATGCTTCAGAAGCTTGGAA+TGG | - | tig0040569:1254-1273 | Msa1459980:intron | 40.0% | |
| CAAGACTTATGGGACAACAA+TGG | - | tig0040569:1314-1333 | Msa1459980:CDS | 40.0% | |
| TTGACTACAGCGACTTTCAT+AGG | - | tig0040569:1470-1489 | Msa1459980:intron | 40.0% | |
| !!! | GTGTTGAGCAGTTTTGTTCA+TGG | - | tig0040569:1593-1612 | Msa1459980:CDS | 40.0% |
| ! | GCTTTTTACCAATGCAGACA+CGG | - | tig0040569:1806-1825 | Msa1459980:CDS | 40.0% |
| ! | CTTTTTACCAATGCAGACAC+GGG | - | tig0040569:1807-1826 | Msa1459980:CDS | 40.0% |
| TCAAAAGGTTTGCAGACAAC+TGG | + | tig0040569:2014-2033 | Msa1459980:intergenic | 40.0% | |
| GCACTCTTACTGTTCTTTGA+GGG | + | tig0040569:2076-2095 | Msa1459980:intergenic | 40.0% | |
| TGCACTCTTACTGTTCTTTG+AGG | + | tig0040569:2077-2096 | Msa1459980:intergenic | 40.0% | |
| GTCATCGAAGAACAACTGAA+AGG | + | tig0040569:2402-2421 | Msa1459980:intergenic | 40.0% | |
| TTTACAGACAGCTAAACGTC+TGG | - | tig0040569:2433-2452 | Msa1459980:intron | 40.0% | |
| TTACAGACAGCTAAACGTCT+GGG | - | tig0040569:2434-2453 | Msa1459980:intron | 40.0% | |
| CCACCACAAACATATCATAG+TGG | + | tig0040569:3268-3287 | Msa1459980:intergenic | 40.0% | |
| CCACTATGATATGTTTGTGG+TGG | - | tig0040569:3265-3284 | Msa1459980:five_prime_UTR | 40.0% | |
| !! | TCATAGTGGATAAGCTTGTG+AGG | + | tig0040569:3307-3326 | Msa1459980:intergenic | 40.0% |
| ATCACCCCTAGCTTGAAATT+TGG | - | tig0040569:3464-3483 | Msa1459980:five_prime_UTR | 40.0% | |
| CAGTATAAGAGATACGGTTG+GGG | + | tig0040569:3508-3527 | Msa1459980:intergenic | 40.0% | |
| CACAGTATAAGAGATACGGT+TGG | + | tig0040569:3510-3529 | Msa1459980:intergenic | 40.0% | |
| CGCGTTATTCTCATGTATCG+TGG | - | tig0040569:159-178 | Msa1459980:three_prime_UTR | 45.0% | |
| !!! | CGCTGTTCACTTTTTTGCGT+CGG | - | tig0040569:243-262 | Msa1459980:three_prime_UTR | 45.0% |
| TTAGAAGGAGAAGGAACGAG+GGG | + | tig0040569:289-308 | Msa1459980:intergenic | 45.0% | |
| GATTAGAAGGAGAAGGAACG+AGG | + | tig0040569:291-310 | Msa1459980:intergenic | 45.0% | |
| !! | GGAGTGGAGAATGGATTAGA+AGG | + | tig0040569:304-323 | Msa1459980:intergenic | 45.0% |
| !! | AGAGATAGTGGAGTGGAGAA+TGG | + | tig0040569:313-332 | Msa1459980:intergenic | 45.0% |
| ! | ATAGCGGAGAGAAGAGATAG+TGG | + | tig0040569:325-344 | Msa1459980:intergenic | 45.0% |
| CTCTCTCTCTCTCTCATTTC+TGG | - | tig0040569:451-470 | Msa1459980:CDS | 45.0% | |
| GGAAAACGGGCATAAATTCC+AGG | - | tig0040569:667-686 | Msa1459980:intron | 45.0% | |
| GGTAATGATTTACCACCCTG+TGG | - | tig0040569:1112-1131 | Msa1459980:intron | 45.0% | |
| TCAAATGTGGACAGACCACA+GGG | + | tig0040569:1130-1149 | Msa1459980:intergenic | 45.0% | |
| TGTGGTCTGTCCACATTTGA+GGG | - | tig0040569:1130-1149 | Msa1459980:intron | 45.0% | |
| CACATTCAAGCCCTCAAATG+TGG | + | tig0040569:1143-1162 | Msa1459980:intergenic | 45.0% | |
| ACTTATGGGACAACAATGGC+TGG | - | tig0040569:1318-1337 | Msa1459980:CDS | 45.0% | |
| !! | GACAACAATGGCTGGTCTTA+GGG | - | tig0040569:1326-1345 | Msa1459980:CDS | 45.0% |
| ! | ATTTTCTCTCGTCCATTGCC+AGG | - | tig0040569:1432-1451 | Msa1459980:intron | 45.0% |
| TAAACCAGACCCTGTTCTCA+AGG | - | tig0040569:1637-1656 | Msa1459980:CDS | 45.0% | |
| AAACCAGACCCTGTTCTCAA+GGG | - | tig0040569:1638-1657 | Msa1459980:CDS | 45.0% | |
| GCAAAATGCCCTTGAGAACA+GGG | + | tig0040569:1649-1668 | Msa1459980:intergenic | 45.0% | |
| TGCAAAATGCCCTTGAGAAC+AGG | + | tig0040569:1650-1669 | Msa1459980:intergenic | 45.0% | |
| GCTTAAAAGACTTGGACTCG+AGG | - | tig0040569:1845-1864 | Msa1459980:intron | 45.0% | |
| GATGCTGTCAGAGGAATTCA+GGG | + | tig0040569:1901-1920 | Msa1459980:intergenic | 45.0% | |
| TGATGCTGTCAGAGGAATTC+AGG | + | tig0040569:1902-1921 | Msa1459980:intergenic | 45.0% | |
| AAGCCGTCCTGATTCTGATA+CGG | - | tig0040569:1974-1993 | Msa1459980:CDS | 45.0% | |
| GTACCGTATCAGAATCAGGA+CGG | + | tig0040569:1980-1999 | Msa1459980:intergenic | 45.0% | |
| !! | GGAAGTACCGTATCAGAATC+AGG | + | tig0040569:1984-2003 | Msa1459980:intergenic | 45.0% |
| TTGCAGACAACTGGTGTCTT+TGG | + | tig0040569:2005-2024 | Msa1459980:intergenic | 45.0% | |
| TGTTCTTACTCCTCCAGACA+TGG | - | tig0040569:2323-2342 | Msa1459980:CDS | 45.0% | |
| TTACTCCTCCAGACATGGTA+TGG | - | tig0040569:2328-2347 | Msa1459980:CDS | 45.0% | |
| GTTTGTCACCATACCATGTC+TGG | + | tig0040569:2339-2358 | Msa1459980:intergenic | 45.0% | |
| TCTAATTGCCACATCGATGC+AGG | - | tig0040569:3080-3099 | Msa1459980:intron | 45.0% | |
| !! | AGAGGCATTTCCAGAGCTAT+GGG | - | tig0040569:3164-3183 | Msa1459980:intron | 45.0% |
| !! | TGTATATAATTATTATTATT+TGG | - | tig0040569:1161-1180 | Msa1459980:intron | 5.0% |
| !! | AAAAAAAAAAAAAAAACAAA+AGG | + | tig0040569:1520-1539 | Msa1459980:intergenic | 5.0% |
| !! | GGAGAGAAGAGATAGTGGAG+TGG | + | tig0040569:320-339 | Msa1459980:intergenic | 50.0% |
| GGAGCAGAGTAAAGCGATAG+CGG | + | tig0040569:341-360 | Msa1459980:intergenic | 50.0% | |
| GACACGTATACCGACACATG+TGG | + | tig0040569:859-878 | Msa1459980:intergenic | 50.0% | |
| CTCAAATGTGGACAGACCAC+AGG | + | tig0040569:1131-1150 | Msa1459980:intergenic | 50.0% | |
| CTGTGGTCTGTCCACATTTG+AGG | - | tig0040569:1129-1148 | Msa1459980:intron | 50.0% | |
| GCTTCAGAAGCTTGGAATGG+AGG | - | tig0040569:1257-1276 | Msa1459980:intron | 50.0% | |
| !! | GGACAACAATGGCTGGTCTT+AGG | - | tig0040569:1325-1344 | Msa1459980:CDS | 50.0% |
| CATAGCCAATTGCCTGGCAA+TGG | + | tig0040569:1447-1466 | Msa1459980:intergenic | 50.0% | |
| CATTGCCAGGCAATTGGCTA+TGG | - | tig0040569:1445-1464 | Msa1459980:intron | 50.0% | |
| CAAAGCCATAGCCAATTGCC+TGG | + | tig0040569:1453-1472 | Msa1459980:intergenic | 50.0% | |
| AGAAGGGATGATGCTGTCAG+AGG | + | tig0040569:1910-1929 | Msa1459980:intergenic | 50.0% | |
| TGTCACCATACCATGTCTGG+AGG | + | tig0040569:2336-2355 | Msa1459980:intergenic | 50.0% | |
| CACTTACCGCAACTGTATGG+AGG | + | tig0040569:2460-2479 | Msa1459980:intergenic | 50.0% | |
| CTCCATACAGTTGCGGTAAG+TGG | - | tig0040569:2458-2477 | Msa1459980:intron | 50.0% | |
| GACCACTTACCGCAACTGTA+TGG | + | tig0040569:2463-2482 | Msa1459980:intergenic | 50.0% | |
| TTGCGGTAAGTGGTCCCTAA+TGG | - | tig0040569:2468-2487 | Msa1459980:intron | 50.0% | |
| ATTGCCACATCGATGCAGGT+TGG | - | tig0040569:3084-3103 | Msa1459980:intron | 50.0% | |
| ! | TGTACCAACCTGCATCGATG+TGG | + | tig0040569:3091-3110 | Msa1459980:intergenic | 50.0% |
| !! | GAGAGGCATTTCCAGAGCTA+TGG | - | tig0040569:3163-3182 | Msa1459980:intron | 50.0% |
| ! | TCGGTGTCTGACACACGTCT+TGG | + | tig0040569:881-900 | Msa1459980:intergenic | 55.0% |
| AATGTGGACAGACCACAGGG+TGG | + | tig0040569:1127-1146 | Msa1459980:intergenic | 55.0% | |
| CTCGTCCATTGCCAGGCAAT+TGG | - | tig0040569:1439-1458 | Msa1459980:intron | 55.0% | |
| ATGCCCTTGAGAACAGGGTC+TGG | + | tig0040569:1644-1663 | Msa1459980:intergenic | 55.0% | |
| TCTGGGCCTCCATACAGTTG+CGG | - | tig0040569:2451-2470 | Msa1459980:intron | 55.0% | |
| ATCCACTCCTGTACTGCGCA+CGG | + | tig0040569:3115-3134 | Msa1459980:intergenic | 55.0% | |
| !! | TCGTCGACTTCCCATAGCTC+TGG | + | tig0040569:3177-3196 | Msa1459980:intergenic | 55.0% |
| CGCATGTCCCGTGTCTGCAT+TGG | + | tig0040569:1817-1836 | Msa1459980:intergenic | 60.0% | |
| GGTACATCCGTGCGCAGTAC+AGG | - | tig0040569:3105-3124 | Msa1459980:intron | 60.0% | |
| ATCCGTGCGCAGTACAGGAG+TGG | - | tig0040569:3110-3129 | Msa1459980:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040569 | gene | 94 | 3557 | 94 | ID=Msa1459980;Name=Msa1459980 |
| tig0040569 | mRNA | 94 | 3557 | 94 | ID=Msa1459980-mRNA-1;Parent=Msa1459980;Name=Msa1459980-mRNA-1;_AED=0.13;_eAED=0.13;_QI=331|0.77|0.9|1|0.88|0.8|10|306|296 |
| tig0040569 | exon | 94 | 549 | 94 | ID=Msa1459980-mRNA-1:exon:22511;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 1179 | 1244 | 1179 | ID=Msa1459980-mRNA-1:exon:22510;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 1307 | 1351 | 1307 | ID=Msa1459980-mRNA-1:exon:22509;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 1566 | 1844 | 1566 | ID=Msa1459980-mRNA-1:exon:22508;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 1960 | 2047 | 1960 | ID=Msa1459980-mRNA-1:exon:22507;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 2160 | 2197 | 2160 | ID=Msa1459980-mRNA-1:exon:22506;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 2304 | 2401 | 2304 | ID=Msa1459980-mRNA-1:exon:22505;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 2539 | 2604 | 2539 | ID=Msa1459980-mRNA-1:exon:22504;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 2926 | 3009 | 2926 | ID=Msa1459980-mRNA-1:exon:22503;Parent=Msa1459980-mRNA-1 |
| tig0040569 | exon | 3250 | 3557 | 3250 | ID=Msa1459980-mRNA-1:exon:22502;Parent=Msa1459980-mRNA-1 |
| tig0040569 | five_prime_UTR | 3250 | 3557 | 3250 | ID=Msa1459980-mRNA-1:five_prime_utr;Parent=Msa1459980-mRNA-1 |
| tig0040569 | five_prime_UTR | 2987 | 3009 | 2987 | ID=Msa1459980-mRNA-1:five_prime_utr;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 2926 | 2986 | 2926 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 2539 | 2604 | 2539 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 2304 | 2401 | 2304 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 2160 | 2197 | 2160 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 1960 | 2047 | 1960 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 1566 | 1844 | 1566 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 1307 | 1351 | 1307 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 1179 | 1244 | 1179 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | CDS | 400 | 549 | 400 | ID=Msa1459980-mRNA-1:cds;Parent=Msa1459980-mRNA-1 |
| tig0040569 | three_prime_UTR | 94 | 399 | 94 | ID=Msa1459980-mRNA-1:three_prime_utr;Parent=Msa1459980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
