Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339030 | XP_003606690.1 | 96.797 | 281 | 9 | 0 | 1 | 281 | 1 | 281 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339030 | sp|Q09893|YAI5_SCHPO | 26.295 | 251 | 141 | 8 | 18 | 259 | 8 | 223 | 1.00e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339030 | G7JUV7 | 96.797 | 281 | 9 | 0 | 1 | 281 | 1 | 281 | 0.0 | 567 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603480 | Msa1339030 | 0.935231 | 1.173514e-96 | -8.615850e-47 |
| Msa1339030 | Msa1459980 | 0.892871 | 1.064428e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339030 | MtrunA17_Chr4g0031841 | 96.797 | 281 | 9 | 0 | 1 | 281 | 1 | 281 | 0.0 | 567 |
| Msa1339030 | MtrunA17_Chr2g0328451 | 71.918 | 292 | 70 | 4 | 1 | 281 | 1 | 291 | 4.12e-154 | 431 |
| Msa1339030 | MtrunA17_Chr7g0238911 | 54.153 | 301 | 118 | 3 | 1 | 281 | 1 | 301 | 1.20e-111 | 324 |
| Msa1339030 | MtrunA17_Chr4g0009921 | 55.596 | 277 | 107 | 3 | 8 | 268 | 9 | 285 | 1.82e-108 | 316 |
| Msa1339030 | MtrunA17_Chr4g0009961 | 53.082 | 292 | 116 | 4 | 11 | 281 | 9 | 300 | 7.98e-104 | 304 |
| Msa1339030 | MtrunA17_Chr1g0193721 | 51.087 | 276 | 103 | 4 | 8 | 281 | 4 | 249 | 1.79e-95 | 281 |
| Msa1339030 | MtrunA17_Chr1g0205581 | 41.791 | 268 | 125 | 6 | 11 | 270 | 5 | 249 | 5.38e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339030 | AT5G59480.4 | 63.869 | 274 | 96 | 2 | 7 | 277 | 7 | 280 | 1.80e-127 | 364 |
| Msa1339030 | AT5G59480.5 | 63.869 | 274 | 96 | 2 | 7 | 277 | 7 | 280 | 1.80e-127 | 364 |
| Msa1339030 | AT5G59480.3 | 63.869 | 274 | 96 | 2 | 7 | 277 | 7 | 280 | 1.80e-127 | 364 |
| Msa1339030 | AT5G59480.1 | 63.869 | 274 | 96 | 2 | 7 | 277 | 7 | 280 | 1.80e-127 | 364 |
| Msa1339030 | AT5G59480.2 | 63.869 | 274 | 95 | 3 | 7 | 277 | 7 | 279 | 1.50e-125 | 359 |
| Msa1339030 | AT5G02230.2 | 57.951 | 283 | 114 | 2 | 1 | 281 | 1 | 280 | 2.17e-108 | 315 |
| Msa1339030 | AT5G02230.1 | 57.951 | 283 | 114 | 2 | 1 | 281 | 1 | 280 | 2.17e-108 | 315 |
| Msa1339030 | AT5G02230.3 | 57.951 | 283 | 114 | 2 | 1 | 281 | 38 | 317 | 9.14e-108 | 315 |
| Msa1339030 | AT5G59490.1 | 52.837 | 282 | 110 | 4 | 6 | 281 | 2 | 266 | 7.03e-93 | 275 |
| Msa1339030 | AT3G62040.1 | 52.500 | 240 | 83 | 4 | 45 | 281 | 1 | 212 | 1.39e-82 | 247 |
| Msa1339030 | AT5G59490.2 | 53.947 | 228 | 88 | 2 | 6 | 233 | 2 | 212 | 2.22e-75 | 229 |
| Msa1339030 | AT2G32150.1 | 40.816 | 245 | 123 | 2 | 16 | 260 | 7 | 229 | 2.24e-68 | 213 |
| Msa1339030 | AT2G32150.2 | 42.466 | 219 | 104 | 3 | 16 | 234 | 7 | 203 | 1.46e-59 | 189 |
| Msa1339030 | AT2G32150.3 | 42.929 | 198 | 91 | 3 | 16 | 213 | 7 | 182 | 6.54e-53 | 171 |
Find 85 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATTGTTTCCAAATTTC+AGG | 0.187226 | tig0003001:-17712 | None:intergenic |
| ATCACCCCTAGCCTGAAATT+TGG | 0.191523 | tig0003001:+17701 | Msa1339030:three_prime_UTR |
| AACAAGAGACAATCATATTT+TGG | 0.202288 | tig0003001:-14995 | None:intergenic |
| GGACAACAATGGCTGGTCTT+AGG | 0.241770 | tig0003001:+15599 | Msa1339030:CDS |
| TATTCATTATACAAGACTTA+TGG | 0.249582 | tig0003001:+15577 | Msa1339030:CDS |
| CAGACTTCACAAATTATATA+TGG | 0.268556 | tig0003001:-14422 | None:intergenic |
| AATCAAGTTATTAAAATATC+TGG | 0.285103 | tig0003001:-14501 | None:intergenic |
| TGATGCTGTCAGAGGAATTC+AGG | 0.289738 | tig0003001:-16166 | None:intergenic |
| ACACTTTATCCTTTGAGTTC+TGG | 0.296418 | tig0003001:+15332 | Msa1339030:CDS |
| TTGCAGACAACTGGTGTCTT+TGG | 0.298955 | tig0003001:-16269 | None:intergenic |
| TGCAAAATGCCCTTGAGAAC+AGG | 0.303805 | tig0003001:-15914 | None:intergenic |
| TTGACTACAGCGACTTTCAT+AGG | 0.319658 | tig0003001:+15744 | Msa1339030:CDS |
| TCTGGTTTAAGTAGATTATA+TGG | 0.325088 | tig0003001:-15890 | None:intergenic |
| TGCATTCTTACTGTTCTTTG+AGG | 0.326553 | tig0003001:-16341 | None:intergenic |
| TATAATGAATAGCACAATTC+AGG | 0.347289 | tig0003001:-15565 | None:intergenic |
| AGAGTGGAGAATGGATTAGA+AGG | 0.356790 | tig0003001:-14619 | None:intergenic |
| TTATACTGTGTAATTACTTA+AGG | 0.365491 | tig0003001:+17757 | Msa1339030:three_prime_UTR |
| ATTCATTATACAAGACTTAT+GGG | 0.366669 | tig0003001:+15578 | Msa1339030:CDS |
| CTCGTCCATTGCCAGGCAAT+TGG | 0.388849 | tig0003001:+15713 | Msa1339030:intron |
| AGAGAAGAGAGAGTGGAGAA+TGG | 0.417390 | tig0003001:-14628 | None:intergenic |
| GACAACAATGGCTGGTCTTA+GGG | 0.420457 | tig0003001:+15600 | Msa1339030:CDS |
| TCAAAAGGTTTGCAGACAAC+TGG | 0.421037 | tig0003001:-16278 | None:intergenic |
| AAATATGATTGTCTCTTGTT+CGG | 0.422018 | tig0003001:+14998 | Msa1339030:CDS |
| ATTACACAGTATAAGATATA+CGG | 0.434744 | tig0003001:-17748 | None:intergenic |
| ACTTAAGGCATTATGCTTCA+AGG | 0.435396 | tig0003001:+17772 | Msa1339030:three_prime_UTR |
| TATCCACTATGATTTGTTTG+TGG | 0.446238 | tig0003001:+17566 | Msa1339030:three_prime_UTR |
| GGAAGTACCGTATCAGAATC+AGG | 0.448802 | tig0003001:-16248 | None:intergenic |
| TTGTTTCCAAATTTCAGGCT+AGG | 0.455511 | tig0003001:-17707 | None:intergenic |
| CATTGCCAGGCAATTGGCTA+TGG | 0.457299 | tig0003001:+15719 | Msa1339030:intron |
| ACAGTATAAGATATACGGTT+GGG | 0.458504 | tig0003001:-17743 | None:intergenic |
| TGTTTCCAAATTTCAGGCTA+GGG | 0.460671 | tig0003001:-17706 | None:intergenic |
| TGGTGGTGTCTTTAGTATGT+TGG | 0.460705 | tig0003001:+17522 | Msa1339030:three_prime_UTR |
| TGTGAAGTCAAGATGGAAAA+CGG | 0.461158 | tig0003001:+14947 | Msa1339030:exon |
| GGAAAACGGGCATAAATTCC+AGG | 0.464067 | tig0003001:+14961 | Msa1339030:CDS |
| GCATTCTTACTGTTCTTTGA+GGG | 0.472107 | tig0003001:-16340 | None:intergenic |
| TTTACAGACAGCTAAACGTC+TGG | 0.475885 | tig0003001:+16699 | Msa1339030:CDS |
| GAGAGGCATTTCCAGAGCTA+TGG | 0.475952 | tig0003001:+17403 | Msa1339030:CDS |
| GGTACATCCGTGCGCAGTAC+AGG | 0.476231 | tig0003001:+17345 | Msa1339030:CDS |
| GTGAAGTCAAGATGGAAAAC+GGG | 0.482586 | tig0003001:+14948 | Msa1339030:exon |
| GAGTATATGCTTCAGAAGCT+TGG | 0.484652 | tig0003001:+15523 | Msa1339030:intron |
| TCGTCAACTTCCCATAGCTC+TGG | 0.487698 | tig0003001:-17414 | None:intergenic |
| TATCCACTATGATTTGTTTG+TGG | 0.490184 | tig0003001:+17502 | Msa1339030:three_prime_UTR |
| AGAGGCATTTCCAGAGCTAT+GGG | 0.495371 | tig0003001:+17404 | Msa1339030:CDS |
| GACCACTTACCGCAACTGTA+TGG | 0.497596 | tig0003001:-16726 | None:intergenic |
| CGCATGTCCCGTGTCTGCAT+TGG | 0.498454 | tig0003001:-16081 | None:intergenic |
| ATGCCCTTGAGAACAGGGTC+TGG | 0.502133 | tig0003001:-15908 | None:intergenic |
| GAGAATGGATTAGAAGGAGA+AGG | 0.512401 | tig0003001:-14613 | None:intergenic |
| GCAAAATGCCCTTGAGAACA+GGG | 0.514850 | tig0003001:-15913 | None:intergenic |
| ACGGAATAAAGAGAGCGTTA+TGG | 0.518091 | tig0003001:-14533 | None:intergenic |
| TAAACCAGACCCTGTTCTCA+AGG | 0.525046 | tig0003001:+15904 | Msa1339030:CDS |
| CCACTATGATTTGTTTGTGG+TGG | 0.525435 | tig0003001:+17505 | Msa1339030:three_prime_UTR |
| ATTTGAAAAGGCTTTCAAGT+TGG | 0.546736 | tig0003001:+16307 | Msa1339030:CDS |
| AGTAGAGTGCTTAAAAGACT+TGG | 0.547877 | tig0003001:+16104 | Msa1339030:CDS |
| GATTAGAAGGAGAAGGAACG+AGG | 0.554040 | tig0003001:-14606 | None:intergenic |
| ATTAGAAGGAGAAGGAACGA+GGG | 0.560878 | tig0003001:-14605 | None:intergenic |
| CACAGTATAAGATATACGGT+TGG | 0.562828 | tig0003001:-17744 | None:intergenic |
| GATGCTGTCAGAGGAATTCA+GGG | 0.563816 | tig0003001:-16165 | None:intergenic |
| GTAAAGTTGTGAAGTCAAGA+TGG | 0.567106 | tig0003001:+14940 | Msa1339030:exon |
| CCACCACAAACAAATCATAG+TGG | 0.568100 | tig0003001:-17505 | None:intergenic |
| ACTTATGGGACAACAATGGC+TGG | 0.571812 | tig0003001:+15592 | Msa1339030:CDS |
| GCTTCAGAAGCTTGGAATGG+AGG | 0.578253 | tig0003001:+15531 | Msa1339030:CDS |
| ATCCGTGCGCAGTACAGGAG+TGG | 0.578313 | tig0003001:+17350 | Msa1339030:CDS |
| TGTATTATTCTCATGTATCG+TGG | 0.580369 | tig0003001:+14477 | Msa1339030:five_prime_UTR |
| ACACCACAAACAAATCATAG+TGG | 0.583279 | tig0003001:-17569 | None:intergenic |
| ATCCACTCCTGTACTGCGCA+CGG | 0.590254 | tig0003001:-17352 | None:intergenic |
| TATGCTTCAGAAGCTTGGAA+TGG | 0.599444 | tig0003001:+15528 | Msa1339030:CDS |
| GTTTCCAAATTTCAGGCTAG+GGG | 0.600658 | tig0003001:-17705 | None:intergenic |
| ATAGCGGAGAGAAGAGAGAG+TGG | 0.605877 | tig0003001:-14635 | None:intergenic |
| TTAGAAGGAGAAGGAACGAG+GGG | 0.610775 | tig0003001:-14604 | None:intergenic |
| GCTTGAAATCATCAACTACA+AGG | 0.613118 | tig0003001:+17440 | Msa1339030:CDS |
| TTACAGACAGCTAAACGTCT+GGG | 0.621120 | tig0003001:+16700 | Msa1339030:CDS |
| GTTTAGCTGTCTGTAAATTG+CGG | 0.621197 | tig0003001:-16693 | None:intergenic |
| CAGTATAAGATATACGGTTG+GGG | 0.624453 | tig0003001:-17742 | None:intergenic |
| GGAGCAGAGTAAAGCGATAG+CGG | 0.624788 | tig0003001:-14651 | None:intergenic |
| AGAAGGGATGATGCTGTCAG+AGG | 0.631273 | tig0003001:-16174 | None:intergenic |
| ACGCCGTCCTGATTCTGATA+CGG | 0.633852 | tig0003001:+16241 | Msa1339030:CDS |
| AAACCAGACCCTGTTCTCAA+GGG | 0.634734 | tig0003001:+15905 | Msa1339030:CDS |
| GCTTAAAAGACTTGGACTCG+AGG | 0.655535 | tig0003001:+16112 | Msa1339030:CDS |
| CACTTACCGCAACTGTATGG+AGG | 0.660444 | tig0003001:-16723 | None:intergenic |
| TCTGGGCCTCCATACAGTTG+CGG | 0.662336 | tig0003001:+16717 | Msa1339030:CDS |
| CAAGACTTATGGGACAACAA+TGG | 0.663167 | tig0003001:+15588 | Msa1339030:CDS |
| GCTGAAATTCCAGAACTCAA+AGG | 0.664777 | tig0003001:-15341 | None:intergenic |
| GAGTATTCATAATATCAGAG+AGG | 0.717994 | tig0003001:+17386 | Msa1339030:CDS |
| GAAAGCAAGAGAGAATAATG+CGG | 0.721892 | tig0003001:-14672 | None:intergenic |
| GTACCGTATCAGAATCAGGA+CGG | 0.729331 | tig0003001:-16244 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACTTTTTAAATTATTGT+CGG | - | tig0003001:15112-15131 | None:intergenic | 10.0% |
| !! | ATTATTATTATTTGGTAAAT+TGG | + | tig0003001:15443-15462 | Msa1339030:intron | 10.0% |
| !! | AAATATCAAAAAAAAACAAA+AGG | - | tig0003001:15794-15813 | None:intergenic | 10.0% |
| !!! | TTTAAGAATTAGATTTTAAA+AGG | + | tig0003001:16902-16921 | Msa1339030:intron | 10.0% |
| !! | AATCAAGTTATTAAAATATC+TGG | - | tig0003001:14504-14523 | None:intergenic | 15.0% |
| !! | AAATTGAGGAAAAAAATAAA+AGG | - | tig0003001:14787-14806 | None:intergenic | 15.0% |
| !!! | ACATATTTTTTTATGCAAAT+AGG | + | tig0003001:15665-15684 | Msa1339030:intron | 15.0% |
| !! | ATCATAAAAAACAAATACAA+TGG | - | tig0003001:16845-16864 | None:intergenic | 15.0% |
| !! | TTATGATTTGAAAAGAATTA+AGG | + | tig0003001:16858-16877 | Msa1339030:intron | 15.0% |
| !!! | TTAAAAGGATTACTTTTATT+TGG | + | tig0003001:16917-16936 | Msa1339030:intron | 15.0% |
| !!! | AAGTTTTGAATGTTAATTAT+TGG | + | tig0003001:17014-17033 | Msa1339030:intron | 15.0% |
| !! | ATTCATTGTTATATCATGTA+TGG | + | tig0003001:15045-15064 | Msa1339030:intron | 20.0% |
| !! | GTAATTATCAAAAACAAATC+AGG | - | tig0003001:15299-15318 | None:intergenic | 20.0% |
| !! | TATTCATTATACAAGACTTA+TGG | + | tig0003001:15577-15596 | Msa1339030:CDS | 20.0% |
| !! | ATTCATTATACAAGACTTAT+GGG | + | tig0003001:15578-15597 | Msa1339030:CDS | 20.0% |
| !! | TTATATGTAAAAGATACAGA+AGG | - | tig0003001:16468-16487 | None:intergenic | 20.0% |
| !! | TTTATACTCCAAAAAAAGAT+AGG | + | tig0003001:16505-16524 | Msa1339030:intron | 20.0% |
| !! | TTAACATTCAAAACTTTAAC+AGG | - | tig0003001:17010-17029 | None:intergenic | 20.0% |
| !! | AATTCACTTTATATAGTACA+TGG | - | tig0003001:17289-17308 | None:intergenic | 20.0% |
| !! | ATTACACAGTATAAGATATA+CGG | - | tig0003001:17751-17770 | None:intergenic | 20.0% |
| !! | TTATACTGTGTAATTACTTA+AGG | + | tig0003001:17757-17776 | Msa1339030:three_prime_UTR | 20.0% |
| ! | CAGACTTCACAAATTATATA+TGG | - | tig0003001:14425-14444 | None:intergenic | 25.0% |
| !! | AAAAGTGAACAACTTTTGAA+CGG | - | tig0003001:14555-14574 | None:intergenic | 25.0% |
| !! | AACAAGAGACAATCATATTT+TGG | - | tig0003001:14998-15017 | None:intergenic | 25.0% |
| ! | AAATATGATTGTCTCTTGTT+CGG | + | tig0003001:14998-15017 | Msa1339030:CDS | 25.0% |
| ! | CAAACAGCAAAAAATATTGA+AGG | + | tig0003001:15365-15384 | Msa1339030:CDS | 25.0% |
| !! | GTTAGGTATTTATTTAGAGT+TGG | + | tig0003001:15486-15505 | Msa1339030:intron | 25.0% |
| ! | TATAATGAATAGCACAATTC+AGG | - | tig0003001:15568-15587 | None:intergenic | 25.0% |
| !! | TCTGGTTTAAGTAGATTATA+TGG | - | tig0003001:15893-15912 | None:intergenic | 25.0% |
| !! | TTTTCAAATGCATCTTCAAA+AGG | - | tig0003001:16296-16315 | None:intergenic | 25.0% |
| !!! | TTTTGAAGATGCATTTGAAA+AGG | + | tig0003001:16295-16314 | Msa1339030:CDS | 25.0% |
| !! | CAAAGTTGATCTATTAAAGA+GGG | - | tig0003001:16374-16393 | None:intergenic | 25.0% |
| !! | TCAAAGTTGATCTATTAAAG+AGG | - | tig0003001:16375-16394 | None:intergenic | 25.0% |
| ! | TCATTCATCAATAACCATTA+GGG | - | tig0003001:16751-16770 | None:intergenic | 25.0% |
| ! | TTCATTCATCAATAACCATT+AGG | - | tig0003001:16752-16771 | None:intergenic | 25.0% |
| TGTATTATTCTCATGTATCG+TGG | + | tig0003001:14477-14496 | Msa1339030:five_prime_UTR | 30.0% | |
| CATAACAAGCGAAAAAATTG+AGG | - | tig0003001:14801-14820 | None:intergenic | 30.0% | |
| ! | TTCATGAGTTTTTGTTGAGA+AGG | + | tig0003001:14858-14877 | Msa1339030:intron | 30.0% |
| ACGTCAATTGTATCTGTATT+CGG | - | tig0003001:15174-15193 | None:intergenic | 30.0% | |
| TTGAATGTAATCACGTATGT+TGG | + | tig0003001:15196-15215 | Msa1339030:intron | 30.0% | |
| TGTTACATGCTAATTTCACT+TGG | - | tig0003001:15833-15852 | None:intergenic | 30.0% | |
| !! | AAACGTACCACTTTTCTAAA+AGG | - | tig0003001:15947-15966 | None:intergenic | 30.0% |
| GAAAGTAATACTTGATTGAG+AGG | + | tig0003001:15992-16011 | Msa1339030:intron | 30.0% | |
| ATTGGTAAAAAGCTGCAAAA+GGG | - | tig0003001:16066-16085 | None:intergenic | 30.0% | |
| ATCCCTTCTAATGAAAAAGT+TGG | + | tig0003001:16188-16207 | Msa1339030:CDS | 30.0% | |
| !!! | TGCCAACTTTTTCATTAGAA+GGG | - | tig0003001:16193-16212 | None:intergenic | 30.0% |
| ! | ATTTGAAAAGGCTTTCAAGT+TGG | + | tig0003001:16307-16326 | Msa1339030:CDS | 30.0% |
| AAAGAGAAGAGCTATTAGAA+AGG | - | tig0003001:16405-16424 | None:intergenic | 30.0% | |
| TTTCTAATAGCTCTTCTCTT+TGG | + | tig0003001:16404-16423 | Msa1339030:intron | 30.0% | |
| !!! | CATCATGTCCTATCTTTTTT+TGG | - | tig0003001:16516-16535 | None:intergenic | 30.0% |
| ! | TGCTTGTCAATTGATAACTA+AGG | - | tig0003001:16544-16563 | None:intergenic | 30.0% |
| TTAGTTATCAATTGACAAGC+AGG | + | tig0003001:16543-16562 | Msa1339030:intron | 30.0% | |
| TTTGATTGTATAGGAGCAAA+GGG | - | tig0003001:16958-16977 | None:intergenic | 30.0% | |
| !! | TTTTGATTGTATAGGAGCAA+AGG | - | tig0003001:16959-16978 | None:intergenic | 30.0% |
| ATAAGTTACATTCAACTGAC+TGG | - | tig0003001:16982-17001 | None:intergenic | 30.0% | |
| ! | CGATTCCTTTTTCTTTTGTT+TGG | + | tig0003001:17042-17061 | Msa1339030:intron | 30.0% |
| GGTTTCCAAACAAAAGAAAA+AGG | - | tig0003001:17050-17069 | None:intergenic | 30.0% | |
| CCACATATTAAAGAGCAATT+CGG | + | tig0003001:17130-17149 | Msa1339030:intron | 30.0% | |
| GAGTATTCATAATATCAGAG+AGG | + | tig0003001:17386-17405 | Msa1339030:CDS | 30.0% | |
| !! | TATCCACTATGATTTGTTTG+TGG | + | tig0003001:17502-17521 | Msa1339030:three_prime_UTR | 30.0% |
| !! | TATCCACTATGATTTGTTTG+TGG | + | tig0003001:17502-17521 | Msa1339030:three_prime_UTR | 30.0% |
| TCACATTGTTTCCAAATTTC+AGG | - | tig0003001:17715-17734 | None:intergenic | 30.0% | |
| ACAGTATAAGATATACGGTT+GGG | - | tig0003001:17746-17765 | None:intergenic | 30.0% | |
| GAAAGCAAGAGAGAATAATG+CGG | - | tig0003001:14675-14694 | None:intergenic | 35.0% | |
| GTAAAGTTGTGAAGTCAAGA+TGG | + | tig0003001:14940-14959 | Msa1339030:exon | 35.0% | |
| TGTGAAGTCAAGATGGAAAA+CGG | + | tig0003001:14947-14966 | Msa1339030:exon | 35.0% | |
| !!! | GAGACAATCATATTTTGGCT+TGG | - | tig0003001:14993-15012 | None:intergenic | 35.0% |
| TTGAATTTAGCCACATGTGT+CGG | + | tig0003001:15139-15158 | Msa1339030:intron | 35.0% | |
| TCAAAATCATGTGTCAGTGT+TGG | - | tig0003001:15225-15244 | None:intergenic | 35.0% | |
| ! | ACACTTTATCCTTTGAGTTC+TGG | + | tig0003001:15332-15351 | Msa1339030:CDS | 35.0% |
| TGAAGTTGAAGCATGAAGTT+AGG | + | tig0003001:15469-15488 | Msa1339030:intron | 35.0% | |
| !!! | TGTTGAGCAGTTTTGTTCAT+GGG | + | tig0003001:15861-15880 | Msa1339030:intron | 35.0% |
| !! | AAGCTTGCCTTTTAGAAAAG+TGG | + | tig0003001:15937-15956 | Msa1339030:CDS | 35.0% |
| CATTGGTAAAAAGCTGCAAA+AGG | - | tig0003001:16067-16086 | None:intergenic | 35.0% | |
| ! | AGTAGAGTGCTTAAAAGACT+TGG | + | tig0003001:16104-16123 | Msa1339030:CDS | 35.0% |
| !!! | CTGCCAACTTTTTCATTAGA+AGG | - | tig0003001:16194-16213 | None:intergenic | 35.0% |
| GCATTCTTACTGTTCTTTGA+GGG | - | tig0003001:16343-16362 | None:intergenic | 35.0% | |
| TGCATTCTTACTGTTCTTTG+AGG | - | tig0003001:16344-16363 | None:intergenic | 35.0% | |
| GTTTAGCTGTCTGTAAATTG+CGG | - | tig0003001:16696-16715 | None:intergenic | 35.0% | |
| !!! | CTGACTGGTTTTGATTGTAT+AGG | - | tig0003001:16967-16986 | None:intergenic | 35.0% |
| !! | CTTTTGTTTGGAAACCAGTA+AGG | + | tig0003001:17054-17073 | Msa1339030:intron | 35.0% |
| ! | GGAAACCAGTAAGGTTTTTA+AGG | + | tig0003001:17063-17082 | Msa1339030:intron | 35.0% |
| TGACACCTTAAAAACCTTAC+TGG | - | tig0003001:17071-17090 | None:intergenic | 35.0% | |
| CCGAATTGCTCTTTAATATG+TGG | - | tig0003001:17133-17152 | None:intergenic | 35.0% | |
| GCTTGAAATCATCAACTACA+AGG | + | tig0003001:17440-17459 | Msa1339030:CDS | 35.0% | |
| ACACCACAAACAAATCATAG+TGG | - | tig0003001:17572-17591 | None:intergenic | 35.0% | |
| TGTTTCCAAATTTCAGGCTA+GGG | - | tig0003001:17709-17728 | None:intergenic | 35.0% | |
| TTGTTTCCAAATTTCAGGCT+AGG | - | tig0003001:17710-17729 | None:intergenic | 35.0% | |
| CAGTATAAGATATACGGTTG+GGG | - | tig0003001:17745-17764 | None:intergenic | 35.0% | |
| CACAGTATAAGATATACGGT+TGG | - | tig0003001:17747-17766 | None:intergenic | 35.0% | |
| !! | ACGGAATAAAGAGAGCGTTA+TGG | - | tig0003001:14536-14555 | None:intergenic | 40.0% |
| !!! | AGTTGTTCACTTTTTCGCGT+CGG | + | tig0003001:14561-14580 | Msa1339030:five_prime_UTR | 40.0% |
| ATTAGAAGGAGAAGGAACGA+GGG | - | tig0003001:14608-14627 | None:intergenic | 40.0% | |
| !! | GAGAATGGATTAGAAGGAGA+AGG | - | tig0003001:14616-14635 | None:intergenic | 40.0% |
| !! | AGAGTGGAGAATGGATTAGA+AGG | - | tig0003001:14622-14641 | None:intergenic | 40.0% |
| GTGAAGTCAAGATGGAAAAC+GGG | + | tig0003001:14948-14967 | Msa1339030:exon | 40.0% | |
| !!! | ATTTTGGCTTGGAAACTTCC+TGG | - | tig0003001:14982-15001 | None:intergenic | 40.0% |
| CTCACATAGACAATAGACAC+TGG | + | tig0003001:15072-15091 | Msa1339030:intron | 40.0% | |
| GCTGAAATTCCAGAACTCAA+AGG | - | tig0003001:15344-15363 | None:intergenic | 40.0% | |
| GAGTATATGCTTCAGAAGCT+TGG | + | tig0003001:15523-15542 | Msa1339030:intron | 40.0% | |
| TATGCTTCAGAAGCTTGGAA+TGG | + | tig0003001:15528-15547 | Msa1339030:CDS | 40.0% | |
| CAAGACTTATGGGACAACAA+TGG | + | tig0003001:15588-15607 | Msa1339030:CDS | 40.0% | |
| TTGACTACAGCGACTTTCAT+AGG | + | tig0003001:15744-15763 | Msa1339030:CDS | 40.0% | |
| !!! | GTGTTGAGCAGTTTTGTTCA+TGG | + | tig0003001:15860-15879 | Msa1339030:intron | 40.0% |
| ! | GCTTTTTACCAATGCAGACA+CGG | + | tig0003001:16073-16092 | Msa1339030:intron | 40.0% |
| ! | CTTTTTACCAATGCAGACAC+GGG | + | tig0003001:16074-16093 | Msa1339030:CDS | 40.0% |
| TCAAAAGGTTTGCAGACAAC+TGG | - | tig0003001:16281-16300 | None:intergenic | 40.0% | |
| TTACTCCTCCAGACATGTTA+TGG | + | tig0003001:16593-16612 | Msa1339030:intron | 40.0% | |
| GTTTGTCACCATAACATGTC+TGG | - | tig0003001:16604-16623 | None:intergenic | 40.0% | |
| GTCATCGAAGAACAACTGAA+AGG | - | tig0003001:16668-16687 | None:intergenic | 40.0% | |
| TTTACAGACAGCTAAACGTC+TGG | + | tig0003001:16699-16718 | Msa1339030:CDS | 40.0% | |
| TTACAGACAGCTAAACGTCT+GGG | + | tig0003001:16700-16719 | Msa1339030:CDS | 40.0% | |
| CCACCACAAACAAATCATAG+TGG | - | tig0003001:17508-17527 | None:intergenic | 40.0% | |
| !! | CCACTATGATTTGTTTGTGG+TGG | + | tig0003001:17505-17524 | Msa1339030:three_prime_UTR | 40.0% |
| ! | TGGTGGTGTCTTTAGTATGT+TGG | + | tig0003001:17522-17541 | Msa1339030:three_prime_UTR | 40.0% |
| GTTTCCAAATTTCAGGCTAG+GGG | - | tig0003001:17708-17727 | None:intergenic | 40.0% | |
| TTAGAAGGAGAAGGAACGAG+GGG | - | tig0003001:14607-14626 | None:intergenic | 45.0% | |
| GATTAGAAGGAGAAGGAACG+AGG | - | tig0003001:14609-14628 | None:intergenic | 45.0% | |
| AGAGAAGAGAGAGTGGAGAA+TGG | - | tig0003001:14631-14650 | None:intergenic | 45.0% | |
| CTCTCTCTCTCTCTCATTTC+TGG | + | tig0003001:14744-14763 | Msa1339030:intron | 45.0% | |
| GGAAAACGGGCATAAATTCC+AGG | + | tig0003001:14961-14980 | Msa1339030:CDS | 45.0% | |
| GGTAATGATTTACCACCCTG+TGG | + | tig0003001:15386-15405 | Msa1339030:intron | 45.0% | |
| TCAAATGTGGACAGACCACA+GGG | - | tig0003001:15404-15423 | None:intergenic | 45.0% | |
| TGTGGTCTGTCCACATTTGA+GGG | + | tig0003001:15404-15423 | Msa1339030:intron | 45.0% | |
| CACATTCAAGCCCTCAAATG+TGG | - | tig0003001:15417-15436 | None:intergenic | 45.0% | |
| ACTTATGGGACAACAATGGC+TGG | + | tig0003001:15592-15611 | Msa1339030:CDS | 45.0% | |
| !! | GACAACAATGGCTGGTCTTA+GGG | + | tig0003001:15600-15619 | Msa1339030:CDS | 45.0% |
| ! | ATTTTCTCTCGTCCATTGCC+AGG | + | tig0003001:15706-15725 | Msa1339030:intron | 45.0% |
| TAAACCAGACCCTGTTCTCA+AGG | + | tig0003001:15904-15923 | Msa1339030:CDS | 45.0% | |
| AAACCAGACCCTGTTCTCAA+GGG | + | tig0003001:15905-15924 | Msa1339030:CDS | 45.0% | |
| GCAAAATGCCCTTGAGAACA+GGG | - | tig0003001:15916-15935 | None:intergenic | 45.0% | |
| TGCAAAATGCCCTTGAGAAC+AGG | - | tig0003001:15917-15936 | None:intergenic | 45.0% | |
| GCTTAAAAGACTTGGACTCG+AGG | + | tig0003001:16112-16131 | Msa1339030:CDS | 45.0% | |
| GATGCTGTCAGAGGAATTCA+GGG | - | tig0003001:16168-16187 | None:intergenic | 45.0% | |
| TGATGCTGTCAGAGGAATTC+AGG | - | tig0003001:16169-16188 | None:intergenic | 45.0% | |
| GTACCGTATCAGAATCAGGA+CGG | - | tig0003001:16247-16266 | None:intergenic | 45.0% | |
| !! | GGAAGTACCGTATCAGAATC+AGG | - | tig0003001:16251-16270 | None:intergenic | 45.0% |
| TTGCAGACAACTGGTGTCTT+TGG | - | tig0003001:16272-16291 | None:intergenic | 45.0% | |
| TGTCACCATAACATGTCTGG+AGG | - | tig0003001:16601-16620 | None:intergenic | 45.0% | |
| TCTAATTGCCACATCGATGC+AGG | + | tig0003001:17320-17339 | Msa1339030:intron | 45.0% | |
| !! | AGAGGCATTTCCAGAGCTAT+GGG | + | tig0003001:17404-17423 | Msa1339030:CDS | 45.0% |
| ATCACCCCTAGCCTGAAATT+TGG | + | tig0003001:17701-17720 | Msa1339030:three_prime_UTR | 45.0% | |
| !! | TGTATATAATTATTATTATT+TGG | + | tig0003001:15435-15454 | Msa1339030:intron | 5.0% |
| ! | ATAGCGGAGAGAAGAGAGAG+TGG | - | tig0003001:14638-14657 | None:intergenic | 50.0% |
| GGAGCAGAGTAAAGCGATAG+CGG | - | tig0003001:14654-14673 | None:intergenic | 50.0% | |
| GACACGTATACCGACACATG+TGG | - | tig0003001:15152-15171 | None:intergenic | 50.0% | |
| CTCAAATGTGGACAGACCAC+AGG | - | tig0003001:15405-15424 | None:intergenic | 50.0% | |
| CTGTGGTCTGTCCACATTTG+AGG | + | tig0003001:15403-15422 | Msa1339030:intron | 50.0% | |
| GCTTCAGAAGCTTGGAATGG+AGG | + | tig0003001:15531-15550 | Msa1339030:CDS | 50.0% | |
| !! | GGACAACAATGGCTGGTCTT+AGG | + | tig0003001:15599-15618 | Msa1339030:CDS | 50.0% |
| CATAGCCAATTGCCTGGCAA+TGG | - | tig0003001:15721-15740 | None:intergenic | 50.0% | |
| CATTGCCAGGCAATTGGCTA+TGG | + | tig0003001:15719-15738 | Msa1339030:intron | 50.0% | |
| CAAAGCCATAGCCAATTGCC+TGG | - | tig0003001:15727-15746 | None:intergenic | 50.0% | |
| AGAAGGGATGATGCTGTCAG+AGG | - | tig0003001:16177-16196 | None:intergenic | 50.0% | |
| ACGCCGTCCTGATTCTGATA+CGG | + | tig0003001:16241-16260 | Msa1339030:CDS | 50.0% | |
| CACTTACCGCAACTGTATGG+AGG | - | tig0003001:16726-16745 | None:intergenic | 50.0% | |
| CTCCATACAGTTGCGGTAAG+TGG | + | tig0003001:16724-16743 | Msa1339030:intron | 50.0% | |
| GACCACTTACCGCAACTGTA+TGG | - | tig0003001:16729-16748 | None:intergenic | 50.0% | |
| TTGCGGTAAGTGGTCCCTAA+TGG | + | tig0003001:16734-16753 | Msa1339030:intron | 50.0% | |
| ATTGCCACATCGATGCAGGT+TGG | + | tig0003001:17324-17343 | Msa1339030:intron | 50.0% | |
| ! | TGTACCAACCTGCATCGATG+TGG | - | tig0003001:17331-17350 | None:intergenic | 50.0% |
| !! | GAGAGGCATTTCCAGAGCTA+TGG | + | tig0003001:17403-17422 | Msa1339030:CDS | 50.0% |
| TCGTCAACTTCCCATAGCTC+TGG | - | tig0003001:17417-17436 | None:intergenic | 50.0% | |
| AATGTGGACAGACCACAGGG+TGG | - | tig0003001:15401-15420 | None:intergenic | 55.0% | |
| CTCGTCCATTGCCAGGCAAT+TGG | + | tig0003001:15713-15732 | Msa1339030:intron | 55.0% | |
| ATGCCCTTGAGAACAGGGTC+TGG | - | tig0003001:15911-15930 | None:intergenic | 55.0% | |
| TCTGGGCCTCCATACAGTTG+CGG | + | tig0003001:16717-16736 | Msa1339030:CDS | 55.0% | |
| ATCCACTCCTGTACTGCGCA+CGG | - | tig0003001:17355-17374 | None:intergenic | 55.0% | |
| CGCATGTCCCGTGTCTGCAT+TGG | - | tig0003001:16084-16103 | None:intergenic | 60.0% | |
| GGTACATCCGTGCGCAGTAC+AGG | + | tig0003001:17345-17364 | Msa1339030:CDS | 60.0% | |
| ATCCGTGCGCAGTACAGGAG+TGG | + | tig0003001:17350-17369 | Msa1339030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0003001 | gene | 14412 | 17794 | 14412 | ID=Msa1339030;Name=Msa1339030 |
| tig0003001 | mRNA | 14412 | 17794 | 14412 | ID=Msa1339030-mRNA-1;Parent=Msa1339030;Name=Msa1339030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=326|1|1|1|0.87|0.77|9|303|281 |
| tig0003001 | exon | 14412 | 14714 | 14412 | ID=Msa1339030-mRNA-1:exon:1925;Parent=Msa1339030-mRNA-1 |
| tig0003001 | exon | 14936 | 15019 | 14936 | ID=Msa1339030-mRNA-1:exon:1926;Parent=Msa1339030-mRNA-1 |
| tig0003001 | exon | 15321 | 15386 | 15321 | ID=Msa1339030-mRNA-1:exon:1927;Parent=Msa1339030-mRNA-1 |
| tig0003001 | exon | 15524 | 15621 | 15524 | ID=Msa1339030-mRNA-1:exon:1928;Parent=Msa1339030-mRNA-1 |
| tig0003001 | exon | 15728 | 15765 | 15728 | ID=Msa1339030-mRNA-1:exon:1929;Parent=Msa1339030-mRNA-1 |
| tig0003001 | exon | 15871 | 15958 | 15871 | ID=Msa1339030-mRNA-1:exon:1930;Parent=Msa1339030-mRNA-1 |
| tig0003001 | exon | 16074 | 16352 | 16074 | ID=Msa1339030-mRNA-1:exon:1931;Parent=Msa1339030-mRNA-1 |
| tig0003001 | exon | 16673 | 16738 | 16673 | ID=Msa1339030-mRNA-1:exon:1932;Parent=Msa1339030-mRNA-1 |
| tig0003001 | exon | 17342 | 17794 | 17342 | ID=Msa1339030-mRNA-1:exon:1933;Parent=Msa1339030-mRNA-1 |
| tig0003001 | five_prime_UTR | 14412 | 14714 | 14412 | ID=Msa1339030-mRNA-1:five_prime_utr;Parent=Msa1339030-mRNA-1 |
| tig0003001 | five_prime_UTR | 14936 | 14958 | 14936 | ID=Msa1339030-mRNA-1:five_prime_utr;Parent=Msa1339030-mRNA-1 |
| tig0003001 | CDS | 14959 | 15019 | 14959 | ID=Msa1339030-mRNA-1:cds;Parent=Msa1339030-mRNA-1 |
| tig0003001 | CDS | 15321 | 15386 | 15321 | ID=Msa1339030-mRNA-1:cds;Parent=Msa1339030-mRNA-1 |
| tig0003001 | CDS | 15524 | 15621 | 15524 | ID=Msa1339030-mRNA-1:cds;Parent=Msa1339030-mRNA-1 |
| tig0003001 | CDS | 15728 | 15765 | 15728 | ID=Msa1339030-mRNA-1:cds;Parent=Msa1339030-mRNA-1 |
| tig0003001 | CDS | 15871 | 15958 | 15871 | ID=Msa1339030-mRNA-1:cds;Parent=Msa1339030-mRNA-1 |
| tig0003001 | CDS | 16074 | 16352 | 16074 | ID=Msa1339030-mRNA-1:cds;Parent=Msa1339030-mRNA-1 |
| tig0003001 | CDS | 16673 | 16738 | 16673 | ID=Msa1339030-mRNA-1:cds;Parent=Msa1339030-mRNA-1 |
| tig0003001 | CDS | 17342 | 17491 | 17342 | ID=Msa1339030-mRNA-1:cds;Parent=Msa1339030-mRNA-1 |
| tig0003001 | three_prime_UTR | 17492 | 17794 | 17492 | ID=Msa1339030-mRNA-1:three_prime_utr;Parent=Msa1339030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
