AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1226510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1226510 MtrunA17_Chr8g0381861 89.130 46 5 0 1 46 237 282 3.58e-22 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTAGGCAGCTTGAGAAAT+TGG 0.177372 8_2:+889078 Msa1226510:five_prime_UTR
CTTTGACCATGGCTTCATTC+AGG 0.224855 8_2:-888447 None:intergenic
AGCCCTGCAATCAGACATTT+TGG 0.237492 8_2:+890986 Msa1226510:five_prime_UTR
AATTTGAAAGTGTGACTATT+TGG 0.238960 8_2:-888545 None:intergenic
CCGTGTTCTTCACTAGTTTC+AGG 0.242419 8_2:-891529 None:intergenic
TTTGCAGAGAATTGAGAAAT+TGG 0.262448 8_2:+889015 Msa1226510:five_prime_UTR
GTAGTAATTACCTCAGTTAT+AGG 0.273196 8_2:-889139 None:intergenic
CTTCATTCAGGCTTCTGTTT+GGG 0.277676 8_2:-888435 None:intergenic
GGAAAGGAAGGAATCAAAAT+TGG 0.279238 8_2:-888771 None:intergenic
GGCTAATGCTCTTGCGGCCT+CGG 0.289526 8_2:-890967 None:intergenic
GAACGGTGGGGTTTCTGTTT+CGG 0.293881 8_2:+888982 Msa1226510:five_prime_UTR
CCGTCGCCGTGACTGCAATT+TGG 0.295008 8_2:+888840 Msa1226510:five_prime_UTR
AGTAGAAGAAAGAACATTAC+TGG 0.332304 8_2:-888505 None:intergenic
AGAGTAATGCGACGGTTGTT+AGG 0.336551 8_2:+889050 Msa1226510:five_prime_UTR
GCTTCATTCAGGCTTCTGTT+TGG 0.340840 8_2:-888436 None:intergenic
AGCTTGAGAAATTGGGGATT+AGG 0.351998 8_2:+889086 Msa1226510:five_prime_UTR
TCTAGGCAGCTTGAGAAATT+GGG 0.354881 8_2:+889079 Msa1226510:five_prime_UTR
TCTCCAAAATGTCTGATTGC+AGG 0.356336 8_2:-890989 None:intergenic
AGGTTCCTTCAAACCCTTCC+TGG 0.363702 8_2:-889119 None:intergenic
GAATGAGGAGTTGAAGAAAA+AGG 0.364028 8_2:-888617 None:intergenic
TGGGGTTTCTGTTTCGGAGG+TGG 0.403058 8_2:+888988 Msa1226510:five_prime_UTR
TTGAATGAAGACTGCAGCTC+TGG 0.409148 8_2:+890932 Msa1226510:intron
TGGAAAGTGGTTTGAGGCTG+AGG 0.435164 8_2:-888673 None:intergenic
AGAGAAGAGCGGAGAGTTCG+AGG 0.448141 8_2:-888796 None:intergenic
ATTTGAAAGTGTGACTATTT+GGG 0.448187 8_2:-888544 None:intergenic
GAGTAATGCGACGGTTGTTA+GGG 0.448272 8_2:+889051 Msa1226510:five_prime_UTR
GACGGAAATTTGAGATCGGC+GGG 0.467109 8_2:-888741 None:intergenic
GCAGAGAATTGAGAAATTGG+AGG 0.472739 8_2:+889018 Msa1226510:five_prime_UTR
GGAAGTGAAACGGTGGGGTG+TGG 0.478399 8_2:-888693 None:intergenic
TTGCGAAGGCAGGTAAGCTA+TGG 0.479688 8_2:+891497 Msa1226510:CDS
AGTGGTTTGAGGCTGAGGAT+TGG 0.483125 8_2:-888668 None:intergenic
GAAGGAATCAAAATTGGAAT+CGG 0.487467 8_2:-888765 None:intergenic
AAACGGTGGGGTGTGGAAAG+TGG 0.487596 8_2:-888686 None:intergenic
AGAGGACGTAAGAGTGAATG+AGG 0.489716 8_2:-888632 None:intergenic
CGGTGATTAGGAGAAGGAAA+TGG 0.490410 8_2:+888945 Msa1226510:five_prime_UTR
GGATTAGGTTTCGTGTTACC+AGG 0.498013 8_2:+889101 Msa1226510:five_prime_UTR
GAGAGTCGGTGTTGAACGGT+GGG 0.499164 8_2:+888969 Msa1226510:five_prime_UTR
ATTCTTGCAATTGCGAAGGC+AGG 0.502036 8_2:+891487 Msa1226510:CDS
CGGAGAGTTCGAGGAAGGAA+AGG 0.506937 8_2:-888787 None:intergenic
GAGAATTGAGAAATTGGAGG+AGG 0.507588 8_2:+889021 Msa1226510:five_prime_UTR
TGTTACCAGGAAGGGTTTGA+AGG 0.509421 8_2:+889114 Msa1226510:five_prime_UTR
AGGAGCTGGGGAAGTTCAAA+AGG 0.509634 8_2:+891012 Msa1226510:five_prime_UTR
GGAGTTGGAGTGGACGGTGT+AGG 0.511955 8_2:-888714 None:intergenic
CGTGACTGCAATTTGGAAGA+AGG 0.512903 8_2:+888847 Msa1226510:five_prime_UTR
ATTGGAGTATTGAGATGAAG+AGG 0.520273 8_2:-888650 None:intergenic
CTCCAAAATGTCTGATTGCA+GGG 0.525218 8_2:-890988 None:intergenic
CGGAAATTTGAGATCGGCGG+GGG 0.525952 8_2:-888739 None:intergenic
ACTTTCATTTCAGGATTACA+AGG 0.527608 8_2:+891919 Msa1226510:intron
ATCAAAATTGGAATCGGCGA+CGG 0.530085 8_2:-888759 None:intergenic
CTTCTTCCAAATTGCAGTCA+CGG 0.532215 8_2:-888846 None:intergenic
GGCTTCTGTTTGGGTGACAA+AGG 0.534641 8_2:-888426 None:intergenic
GGGGAAGGAGTTGGAGTGGA+CGG 0.535310 8_2:-888720 None:intergenic
CTAGGCAGCTTGAGAAATTG+GGG 0.538326 8_2:+889080 Msa1226510:five_prime_UTR
CGGTGGGGTTTCTGTTTCGG+AGG 0.539820 8_2:+888985 Msa1226510:five_prime_UTR
AGGTTTCGTGTTACCAGGAA+GGG 0.543976 8_2:+889106 Msa1226510:five_prime_UTR
GAGAAGGAAATGGAGAGAGT+CGG 0.548952 8_2:+888955 Msa1226510:five_prime_UTR
TGGCAAGTGAGTAACATTGT+TGG 0.564961 8_2:-888572 None:intergenic
TTTGAAGGAACCTATAACTG+AGG 0.565016 8_2:+889129 Msa1226510:five_prime_UTR
AAGAGCGGAGAGTTCGAGGA+AGG 0.566579 8_2:-888792 None:intergenic
TAGGTTTCGTGTTACCAGGA+AGG 0.568467 8_2:+889105 Msa1226510:five_prime_UTR
GAGTTCGAGGAAGGAAAGGA+AGG 0.569587 8_2:-888783 None:intergenic
AATGCGTGAAATGGTGATGA+TGG 0.584311 8_2:-888592 None:intergenic
TGGAGAGAGTCGGTGTTGAA+CGG 0.589888 8_2:+888965 Msa1226510:five_prime_UTR
GGACGGTGTAGGAAGTGAAA+CGG 0.592277 8_2:-888703 None:intergenic
TGCGAAGGCAGGTAAGCTAT+GGG 0.592521 8_2:+891498 Msa1226510:CDS
AAGGAGTTATATCTTGCTAT+CGG 0.595941 8_2:+888866 Msa1226510:five_prime_UTR
CGACGGAAATTTGAGATCGG+CGG 0.599042 8_2:-888742 None:intergenic
CAGAAGCCTGAATGAAGCCA+TGG 0.606928 8_2:+888441 Msa1226510:five_prime_UTR
CTGGTGCGGTGATTAGGAGA+AGG 0.610719 8_2:+888939 Msa1226510:five_prime_UTR
GGTGTAGGAAGTGAAACGGT+GGG 0.613998 8_2:-888699 None:intergenic
CGGCGACGGAAATTTGAGAT+CGG 0.614058 8_2:-888745 None:intergenic
CCAAATTGCAGTCACGGCGA+CGG 0.616365 8_2:-888840 None:intergenic
GGGGTGTGGAAAGTGGTTTG+AGG 0.618981 8_2:-888679 None:intergenic
TTGCAGGGCTAATGCTCTTG+CGG 0.622054 8_2:-890973 None:intergenic
GGATTTGAAGAGTAATGCGA+CGG 0.629644 8_2:+889042 Msa1226510:five_prime_UTR
AGAGAGTCGGTGTTGAACGG+TGG 0.629757 8_2:+888968 Msa1226510:five_prime_UTR
GACGGTGAAAGATACGATGA+GGG 0.637410 8_2:-888822 None:intergenic
CGACGGTGAAAGATACGATG+AGG 0.643423 8_2:-888823 None:intergenic
TCTCATTCTTGCAATTGCGA+AGG 0.648334 8_2:+891483 Msa1226510:CDS
AGAGTCGGTGTTGAACGGTG+GGG 0.657492 8_2:+888970 Msa1226510:five_prime_UTR
CGGTGTAGGAAGTGAAACGG+TGG 0.657647 8_2:-888700 None:intergenic
TCGGTAACAGAGTTGCTCCG+TGG 0.696566 8_2:+888885 Msa1226510:five_prime_UTR
CCTGAAACTAGTGAAGAACA+CGG 0.696745 8_2:+891529 Msa1226510:CDS
GATGAGGGAAGAGAGAAGAG+CGG 0.709448 8_2:-888807 None:intergenic
CAGATGAATATGCATTGGTG+TGG 0.711307 8_2:+891999 Msa1226510:CDS
TCTGGCACAGAAGAATTCCG+AGG 0.724089 8_2:+890950 Msa1226510:five_prime_UTR
CTCAGCTGCGAATCTCAATG+CGG 0.734213 8_2:+891570 Msa1226510:CDS
GTGTAGGAAGTGAAACGGTG+GGG 0.736083 8_2:-888698 None:intergenic
ACGGAAATTTGAGATCGGCG+GGG 0.740613 8_2:-888740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTTTTTTTTTTTTTG+AGG + chr8_2:889633-889652 Msa1226510:intron 10.0%
!!! TTTCTTTTTTTTTTTTTTGA+GGG + chr8_2:889634-889653 Msa1226510:intron 10.0%
!! ACATTTCATAATAAACTTTA+TGG - chr8_2:889226-889245 None:intergenic 15.0%
!! TATTCTATCTAATATTCAAT+AGG - chr8_2:889483-889502 None:intergenic 15.0%
!! TATTGAATATTAGATAGAAT+AGG + chr8_2:889482-889501 Msa1226510:intron 15.0%
!! TATAAGCAATAATATCATAA+TGG + chr8_2:889742-889761 Msa1226510:intron 15.0%
!!! TTTAGTATAGTTTTTACCAA+TGG + chr8_2:889451-889470 Msa1226510:intron 20.0%
!!! ATTTTGTTATTTGAACAAGT+CGG - chr8_2:889553-889572 None:intergenic 20.0%
!!! AGTTTGTTATTGAACTTTAA+AGG + chr8_2:891121-891140 Msa1226510:intron 20.0%
!!! TTAAAGGTAACATTATTTTG+TGG + chr8_2:891137-891156 Msa1226510:intron 20.0%
!! TAATGATTACACATTTACTA+AGG + chr8_2:891758-891777 Msa1226510:intron 20.0%
!! AATGATTACACATTTACTAA+GGG + chr8_2:891759-891778 Msa1226510:intron 20.0%
!! ATTTGAAAGTGTGACTATTT+GGG - chr8_2:888547-888566 None:intergenic 25.0%
!! AATTTGAAAGTGTGACTATT+TGG - chr8_2:888548-888567 None:intergenic 25.0%
!! TAAGTTGGAATATATTCAAG+AGG - chr8_2:889277-889296 None:intergenic 25.0%
!!! CTTCAAATAAAGCTTTAAGT+TGG - chr8_2:889292-889311 None:intergenic 25.0%
! TCAAATATTCTAGCAATGTT+AGG + chr8_2:889766-889785 Msa1226510:intron 25.0%
! TTCCTAAAAACATAAGCTTA+TGG + chr8_2:889965-889984 Msa1226510:intron 25.0%
!! ATCCATAAGCTTATGTTTTT+AGG - chr8_2:889970-889989 None:intergenic 25.0%
!!! TTACTAGTGTTTTTAGCTTA+AGG - chr8_2:890236-890255 None:intergenic 25.0%
!!! TATCTTTGAAACAAAGTATG+AGG + chr8_2:890501-890520 Msa1226510:intron 25.0%
! AGAGTTTAAGTAACATTGAA+GGG - chr8_2:891063-891082 None:intergenic 25.0%
! TTTATGTGCCAATAAAATTC+TGG - chr8_2:891738-891757 None:intergenic 25.0%
! TGTTCATTTACTTTCATTTC+AGG + chr8_2:891910-891929 Msa1226510:intron 25.0%
!! TTTTTGTTACAGCAAAACTA+AGG - chr8_2:891979-891998 None:intergenic 25.0%
! AAAAACAGATGAATATGCAT+TGG + chr8_2:891994-892013 Msa1226510:CDS 25.0%
AGTAGAAGAAAGAACATTAC+TGG - chr8_2:888508-888527 None:intergenic 30.0%
GAAGGAATCAAAATTGGAAT+CGG - chr8_2:888768-888787 None:intergenic 30.0%
! AAGGAGTTATATCTTGCTAT+CGG + chr8_2:888866-888885 Msa1226510:five_prime_UTR 30.0%
TTTGCAGAGAATTGAGAAAT+TGG + chr8_2:889015-889034 Msa1226510:five_prime_UTR 30.0%
GTAGTAATTACCTCAGTTAT+AGG - chr8_2:889142-889161 None:intergenic 30.0%
! ATTCAATAGGTCTTTTCCAT+TGG - chr8_2:889470-889489 None:intergenic 30.0%
! TTAGGTTGCTGACAAAATTA+AGG + chr8_2:889784-889803 Msa1226510:intron 30.0%
TTAAGGTTCATAACCAATCT+TGG + chr8_2:889801-889820 Msa1226510:intron 30.0%
! CCAGATTGAGTCAATTTTTA+GGG - chr8_2:890616-890635 None:intergenic 30.0%
! ACCAGATTGAGTCAATTTTT+AGG - chr8_2:890617-890636 None:intergenic 30.0%
TTCCAGTAATATGAATTCCT+CGG - chr8_2:890696-890715 None:intergenic 30.0%
!! TCATTAACATTTTGAGTGTC+TGG + chr8_2:890832-890851 Msa1226510:intron 30.0%
CAGAGTTTAAGTAACATTGA+AGG - chr8_2:891064-891083 None:intergenic 30.0%
AAACTGGAATACTAGATTCA+TGG - chr8_2:891320-891339 None:intergenic 30.0%
TTTAACCCAAGCTTCAAATT+TGG - chr8_2:891612-891631 None:intergenic 30.0%
GAAAACCATCAAATTACAGA+GGG + chr8_2:891637-891656 Msa1226510:intron 30.0%
! CAAAGTAGCCAGAATTTTAT+TGG + chr8_2:891727-891746 Msa1226510:intron 30.0%
ACTTTCATTTCAGGATTACA+AGG + chr8_2:891919-891938 Msa1226510:intron 30.0%
AAAAAGGTGAATGCGTGAAA+TGG - chr8_2:888604-888623 None:intergenic 35.0%
GAATGAGGAGTTGAAGAAAA+AGG - chr8_2:888620-888639 None:intergenic 35.0%
!! ATTGGAGTATTGAGATGAAG+AGG - chr8_2:888653-888672 None:intergenic 35.0%
GGAAAGGAAGGAATCAAAAT+TGG - chr8_2:888774-888793 None:intergenic 35.0%
ACCAAAAACAACAAACTCCA+CGG - chr8_2:888905-888924 None:intergenic 35.0%
!!! AGTTTGTTGTTTTTGGTGGT+TGG + chr8_2:888908-888927 Msa1226510:five_prime_UTR 35.0%
TTTGAAGGAACCTATAACTG+AGG + chr8_2:889129-889148 Msa1226510:five_prime_UTR 35.0%
! ATATGTGCTGAGAGTTTGTT+GGG + chr8_2:889603-889622 Msa1226510:intron 35.0%
!!! TTTTTTGAGGGAGAGTTTGT+TGG + chr8_2:889646-889665 Msa1226510:intron 35.0%
!! TTTTTGAGGGAGAGTTTGTT+GGG + chr8_2:889647-889666 Msa1226510:intron 35.0%
GGTTGCAATCTAGGTTATTT+AGG - chr8_2:889860-889879 None:intergenic 35.0%
ATTGCAACCAGAAGTAGTTA+GGG + chr8_2:889871-889890 Msa1226510:intron 35.0%
TGTATTCATGTGTTCGTCAT+TGG + chr8_2:889923-889942 Msa1226510:intron 35.0%
ATCGAAGATTGATTGAAAGC+CGG - chr8_2:890073-890092 None:intergenic 35.0%
ACTAACCTCAAACTGCTATA+GGG + chr8_2:890108-890127 Msa1226510:intron 35.0%
AATAGAGTCTGGCACTTTAT+TGG + chr8_2:890131-890150 Msa1226510:intron 35.0%
GGAAGAAAAAAACAGGAATG+TGG + chr8_2:890305-890324 Msa1226510:intron 35.0%
! TTGCAAGAAAATGCAGGTTT+TGG + chr8_2:890453-890472 Msa1226510:intron 35.0%
! TGCAAGAAAATGCAGGTTTT+GGG + chr8_2:890454-890473 Msa1226510:intron 35.0%
CAAAGTATGAGGTTTCAAGA+AGG + chr8_2:890512-890531 Msa1226510:intron 35.0%
AGGTCAGAAAACAATGAAAC+TGG + chr8_2:890536-890555 Msa1226510:intron 35.0%
GGTCAGAAAACAATGAAACT+GGG + chr8_2:890537-890556 Msa1226510:intron 35.0%
GTCAGAAAACAATGAAACTG+GGG + chr8_2:890538-890557 Msa1226510:intron 35.0%
! CCCTAAAAATTGACTCAATC+TGG + chr8_2:890613-890632 Msa1226510:intron 35.0%
AAATCTCTAGTCTGACGTAT+GGG - chr8_2:891346-891365 None:intergenic 35.0%
AAAATCTCTAGTCTGACGTA+TGG - chr8_2:891347-891366 None:intergenic 35.0%
! TCGAGTTTGACTTATCTTGA+TGG + chr8_2:891418-891437 Msa1226510:intron 35.0%
TGGTGTTTGATCATTCATGT+AGG + chr8_2:891438-891457 Msa1226510:intron 35.0%
TTGAAGCTTGGGTTAAACTA+AGG + chr8_2:891615-891634 Msa1226510:intron 35.0%
GGAAAACCATCAAATTACAG+AGG + chr8_2:891636-891655 Msa1226510:intron 35.0%
TTCATCCCTCTGTAATTTGA+TGG - chr8_2:891645-891664 None:intergenic 35.0%
! ACTTTGACTTTGTGTGTAGA+TGG - chr8_2:891713-891732 None:intergenic 35.0%
TTACTCAACGAGTCAATTCA+AGG + chr8_2:891818-891837 Msa1226510:intron 35.0%
!! TCTGGTTCTGTGGTAAATTT+CGG + chr8_2:891862-891881 Msa1226510:intron 35.0%
CTTCATTCAGGCTTCTGTTT+GGG - chr8_2:888438-888457 None:intergenic 40.0%
! TTTTCAGCTCTCTTTGACCA+TGG - chr8_2:888461-888480 None:intergenic 40.0%
TGGCAAGTGAGTAACATTGT+TGG - chr8_2:888575-888594 None:intergenic 40.0%
! AATGCGTGAAATGGTGATGA+TGG - chr8_2:888595-888614 None:intergenic 40.0%
ATCAAAATTGGAATCGGCGA+CGG - chr8_2:888762-888781 None:intergenic 40.0%
CTTCTTCCAAATTGCAGTCA+CGG - chr8_2:888849-888868 None:intergenic 40.0%
!!! TCCGTGGAGTTTGTTGTTTT+TGG + chr8_2:888901-888920 Msa1226510:five_prime_UTR 40.0%
!!! GTGGAGTTTGTTGTTTTTGG+TGG + chr8_2:888904-888923 Msa1226510:five_prime_UTR 40.0%
GCAGAGAATTGAGAAATTGG+AGG + chr8_2:889018-889037 Msa1226510:five_prime_UTR 40.0%
GAGAATTGAGAAATTGGAGG+AGG + chr8_2:889021-889040 Msa1226510:five_prime_UTR 40.0%
GGATTTGAAGAGTAATGCGA+CGG + chr8_2:889042-889061 Msa1226510:five_prime_UTR 40.0%
TCTAGGCAGCTTGAGAAATT+GGG + chr8_2:889079-889098 Msa1226510:five_prime_UTR 40.0%
AGCTTGAGAAATTGGGGATT+AGG + chr8_2:889086-889105 Msa1226510:five_prime_UTR 40.0%
GATATGTGCTGAGAGTTTGT+TGG + chr8_2:889602-889621 Msa1226510:intron 40.0%
! ACTACTTCTGGTTGCAATCT+AGG - chr8_2:889869-889888 None:intergenic 40.0%
GATTGCAACCAGAAGTAGTT+AGG + chr8_2:889870-889889 Msa1226510:intron 40.0%
TTGCAACCAGAAGTAGTTAG+GGG + chr8_2:889872-889891 Msa1226510:intron 40.0%
CTAATTCCCCTAACTACTTC+TGG - chr8_2:889881-889900 None:intergenic 40.0%
CGAACACATGAATACACACT+TGG - chr8_2:889919-889938 None:intergenic 40.0%
!! CATATCAGGGGTTAGTTTAG+AGG - chr8_2:890022-890041 None:intergenic 40.0%
AACCCCTGATATGAGTAGAT+TGG + chr8_2:890029-890048 Msa1226510:intron 40.0%
CTCCAATCTACTCATATCAG+GGG - chr8_2:890034-890053 None:intergenic 40.0%
GCTCCAATCTACTCATATCA+GGG - chr8_2:890035-890054 None:intergenic 40.0%
AGCTCCAATCTACTCATATC+AGG - chr8_2:890036-890055 None:intergenic 40.0%
TCGAAGATTGATTGAAAGCC+GGG - chr8_2:890072-890091 None:intergenic 40.0%
GACTAACCTCAAACTGCTAT+AGG + chr8_2:890107-890126 Msa1226510:intron 40.0%
CTATTCCCTATAGCAGTTTG+AGG - chr8_2:890116-890135 None:intergenic 40.0%
ACAGAAGACTTAGAACACAG+CGG + chr8_2:890283-890302 Msa1226510:intron 40.0%
GTGGAATCTGAGCAAAAGAT+AGG + chr8_2:890324-890343 Msa1226510:intron 40.0%
ATGAGCTTGCAAGAAAATGC+AGG + chr8_2:890447-890466 Msa1226510:intron 40.0%
!!! AAGAAAATGCAGGTTTTGGG+TGG + chr8_2:890457-890476 Msa1226510:intron 40.0%
!! GTTTTGGGTGGAAATGACAT+TGG + chr8_2:890469-890488 Msa1226510:intron 40.0%
GTATGAGGTTTCAAGAAGGA+AGG + chr8_2:890516-890535 Msa1226510:intron 40.0%
! AGTGGCTGCTTTCATGAAAT+GGG - chr8_2:890579-890598 None:intergenic 40.0%
! TAGTGGCTGCTTTCATGAAA+TGG - chr8_2:890580-890599 None:intergenic 40.0%
! AATTGACTCAATCTGGTTGC+AGG + chr8_2:890620-890639 Msa1226510:intron 40.0%
ACAGTACAGGATCTACATCT+CGG - chr8_2:890665-890684 None:intergenic 40.0%
CAGTAATATGAATTCCTCGG+AGG - chr8_2:890693-890712 None:intergenic 40.0%
CTCCGAGGAATTCATATTAC+TGG + chr8_2:890691-890710 Msa1226510:intron 40.0%
!! CATTTTGAGTGTCTGGTTGA+AGG + chr8_2:890839-890858 Msa1226510:intron 40.0%
CTCCAAAATGTCTGATTGCA+GGG - chr8_2:890991-891010 None:intergenic 40.0%
TCTCCAAAATGTCTGATTGC+AGG - chr8_2:890992-891011 None:intergenic 40.0%
!! GCAATCAGACATTTTGGAGA+AGG + chr8_2:890992-891011 Msa1226510:five_prime_UTR 40.0%
! AAAGGTTTTGCTAGCAATGC+AGG + chr8_2:891030-891049 Msa1226510:exon 40.0%
!! AACACTTTAGCTCTCATGTG+CGG + chr8_2:891177-891196 Msa1226510:intron 40.0%
CACATCATTGTGTTGTGTGT+GGG - chr8_2:891260-891279 None:intergenic 40.0%
TCACATCATTGTGTTGTGTG+TGG - chr8_2:891261-891280 None:intergenic 40.0%
GGAATACTAGATTCATGGTC+TGG - chr8_2:891315-891334 None:intergenic 40.0%
TCTGACGTATGGGTTTAAAC+TGG - chr8_2:891336-891355 None:intergenic 40.0%
TCTCATTCTTGCAATTGCGA+AGG + chr8_2:891483-891502 Msa1226510:CDS 40.0%
CCTGAAACTAGTGAAGAACA+CGG + chr8_2:891529-891548 Msa1226510:CDS 40.0%
GAATCTCAATGCGGTAAATC+AGG + chr8_2:891579-891598 Msa1226510:intron 40.0%
! GTCCACCAAATTTGAAGCTT+GGG + chr8_2:891604-891623 Msa1226510:intron 40.0%
AACCCAAGCTTCAAATTTGG+TGG - chr8_2:891609-891628 None:intergenic 40.0%
! TTTTTCCCCATCTGTATCCA+CGG - chr8_2:891798-891817 None:intergenic 40.0%
TCAACGAGTCAATTCAAGGA+GGG + chr8_2:891822-891841 Msa1226510:intron 40.0%
!! CTGGTTCTGTGGTAAATTTC+GGG + chr8_2:891863-891882 Msa1226510:intron 40.0%
! CAGATGAATATGCATTGGTG+TGG + chr8_2:891999-892018 Msa1226510:CDS 40.0%
GCTTCATTCAGGCTTCTGTT+TGG - chr8_2:888439-888458 None:intergenic 45.0%
CTTTGACCATGGCTTCATTC+AGG - chr8_2:888450-888469 None:intergenic 45.0%
AGAGGACGTAAGAGTGAATG+AGG - chr8_2:888635-888654 None:intergenic 45.0%
GACGGTGAAAGATACGATGA+GGG - chr8_2:888825-888844 None:intergenic 45.0%
CGTGACTGCAATTTGGAAGA+AGG + chr8_2:888847-888866 Msa1226510:five_prime_UTR 45.0%
!!! TTGGTGGTTGGTGTTTTGAC+TGG + chr8_2:888920-888939 Msa1226510:five_prime_UTR 45.0%
!! TTTTGACTGGTGCGGTGATT+AGG + chr8_2:888933-888952 Msa1226510:five_prime_UTR 45.0%
CGGTGATTAGGAGAAGGAAA+TGG + chr8_2:888945-888964 Msa1226510:five_prime_UTR 45.0%
GAGAAGGAAATGGAGAGAGT+CGG + chr8_2:888955-888974 Msa1226510:five_prime_UTR 45.0%
AGAGTAATGCGACGGTTGTT+AGG + chr8_2:889050-889069 Msa1226510:five_prime_UTR 45.0%
GAGTAATGCGACGGTTGTTA+GGG + chr8_2:889051-889070 Msa1226510:five_prime_UTR 45.0%
!! CGGTTGTTAGGGTTTTGTCT+AGG + chr8_2:889062-889081 Msa1226510:five_prime_UTR 45.0%
GTCTAGGCAGCTTGAGAAAT+TGG + chr8_2:889078-889097 Msa1226510:five_prime_UTR 45.0%
CTAGGCAGCTTGAGAAATTG+GGG + chr8_2:889080-889099 Msa1226510:five_prime_UTR 45.0%
GGATTAGGTTTCGTGTTACC+AGG + chr8_2:889101-889120 Msa1226510:five_prime_UTR 45.0%
TAGGTTTCGTGTTACCAGGA+AGG + chr8_2:889105-889124 Msa1226510:five_prime_UTR 45.0%
AGGTTTCGTGTTACCAGGAA+GGG + chr8_2:889106-889125 Msa1226510:five_prime_UTR 45.0%
TGTTACCAGGAAGGGTTTGA+AGG + chr8_2:889114-889133 Msa1226510:five_prime_UTR 45.0%
GAGCTTGAAATGCTAATGCC+CGG + chr8_2:890051-890070 Msa1226510:intron 45.0%
CTGCTATAGGGAATAGAGTC+TGG + chr8_2:890120-890139 Msa1226510:intron 45.0%
CAGAAGACTTAGAACACAGC+GGG + chr8_2:890284-890303 Msa1226510:intron 45.0%
CACAGCGGGAAGAAAAAAAC+AGG + chr8_2:890298-890317 Msa1226510:intron 45.0%
! TGGCTGCTTTCATGAAATGG+GGG - chr8_2:890577-890596 None:intergenic 45.0%
! GTGGCTGCTTTCATGAAATG+GGG - chr8_2:890578-890597 None:intergenic 45.0%
AGGGAGATTCACAGTTGTAG+TGG - chr8_2:890597-890616 None:intergenic 45.0%
TTGAATGAAGACTGCAGCTC+TGG + chr8_2:890932-890951 Msa1226510:intron 45.0%
! AGCCCTGCAATCAGACATTT+TGG + chr8_2:890986-891005 Msa1226510:five_prime_UTR 45.0%
!! AGACATTTTGGAGAAGGAGC+TGG + chr8_2:890998-891017 Msa1226510:five_prime_UTR 45.0%
!! GACATTTTGGAGAAGGAGCT+GGG + chr8_2:890999-891018 Msa1226510:five_prime_UTR 45.0%
!! ACATTTTGGAGAAGGAGCTG+GGG + chr8_2:891000-891019 Msa1226510:five_prime_UTR 45.0%
ATTGTGTTGTGTGTGGGTGT+GGG - chr8_2:891254-891273 None:intergenic 45.0%
ATTCTTGCAATTGCGAAGGC+AGG + chr8_2:891487-891506 Msa1226510:CDS 45.0%
! CCGTGTTCTTCACTAGTTTC+AGG - chr8_2:891532-891551 None:intergenic 45.0%
TCTCAATGCGGTAAATCAGG+AGG + chr8_2:891582-891601 Msa1226510:intron 45.0%
! GGTCCACCAAATTTGAAGCT+TGG + chr8_2:891603-891622 Msa1226510:intron 45.0%
AAGTTTCCCGTGGATACAGA+TGG + chr8_2:891788-891807 Msa1226510:intron 45.0%
AGTTTCCCGTGGATACAGAT+GGG + chr8_2:891789-891808 Msa1226510:intron 45.0%
! TTTTCCCCATCTGTATCCAC+GGG - chr8_2:891797-891816 None:intergenic 45.0%
CTCAACGAGTCAATTCAAGG+AGG + chr8_2:891821-891840 Msa1226510:intron 45.0%
CAACGAGTCAATTCAAGGAG+GGG + chr8_2:891823-891842 Msa1226510:intron 45.0%
GGAGAATTGTCTGAACTCTC+TGG + chr8_2:891844-891863 Msa1226510:intron 45.0%
GGCTTCTGTTTGGGTGACAA+AGG - chr8_2:888429-888448 None:intergenic 50.0%
CAGAAGCCTGAATGAAGCCA+TGG + chr8_2:888441-888460 Msa1226510:five_prime_UTR 50.0%
! AGTGGTTTGAGGCTGAGGAT+TGG - chr8_2:888671-888690 None:intergenic 50.0%
! TGGAAAGTGGTTTGAGGCTG+AGG - chr8_2:888676-888695 None:intergenic 50.0%
GTGTAGGAAGTGAAACGGTG+GGG - chr8_2:888701-888720 None:intergenic 50.0%
GGTGTAGGAAGTGAAACGGT+GGG - chr8_2:888702-888721 None:intergenic 50.0%
GGACGGTGTAGGAAGTGAAA+CGG - chr8_2:888706-888725 None:intergenic 50.0%
! ACGGAAATTTGAGATCGGCG+GGG - chr8_2:888743-888762 None:intergenic 50.0%
! GACGGAAATTTGAGATCGGC+GGG - chr8_2:888744-888763 None:intergenic 50.0%
! CGACGGAAATTTGAGATCGG+CGG - chr8_2:888745-888764 None:intergenic 50.0%
! CGGCGACGGAAATTTGAGAT+CGG - chr8_2:888748-888767 None:intergenic 50.0%
GAGTTCGAGGAAGGAAAGGA+AGG - chr8_2:888786-888805 None:intergenic 50.0%
GATGAGGGAAGAGAGAAGAG+CGG - chr8_2:888810-888829 None:intergenic 50.0%
CGACGGTGAAAGATACGATG+AGG - chr8_2:888826-888845 None:intergenic 50.0%
!!! GGTTGGTGTTTTGACTGGTG+CGG + chr8_2:888925-888944 Msa1226510:five_prime_UTR 50.0%
!! TGGAGAGAGTCGGTGTTGAA+CGG + chr8_2:888965-888984 Msa1226510:five_prime_UTR 50.0%
GAACGGTGGGGTTTCTGTTT+CGG + chr8_2:888982-889001 Msa1226510:five_prime_UTR 50.0%
AGGTTCCTTCAAACCCTTCC+TGG - chr8_2:889122-889141 None:intergenic 50.0%
ACCAATCTTGGCAGCTCTAC+AGG + chr8_2:889813-889832 Msa1226510:intron 50.0%
TCCTGTAGAGCTGCCAAGAT+TGG - chr8_2:889817-889836 None:intergenic 50.0%
TCTGGCACAGAAGAATTCCG+AGG + chr8_2:890950-890969 Msa1226510:five_prime_UTR 50.0%
TTGCAGGGCTAATGCTCTTG+CGG - chr8_2:890976-890995 None:intergenic 50.0%
AGGAGCTGGGGAAGTTCAAA+AGG + chr8_2:891012-891031 Msa1226510:five_prime_UTR 50.0%
CATTGTGTTGTGTGTGGGTG+TGG - chr8_2:891255-891274 None:intergenic 50.0%
TTGCGAAGGCAGGTAAGCTA+TGG + chr8_2:891497-891516 Msa1226510:CDS 50.0%
TGCGAAGGCAGGTAAGCTAT+GGG + chr8_2:891498-891517 Msa1226510:CDS 50.0%
CTCAGCTGCGAATCTCAATG+CGG + chr8_2:891570-891589 Msa1226510:CDS 50.0%
CTGTATCCACGGGAAACTTG+AGG - chr8_2:891787-891806 None:intergenic 50.0%
GTTTCCCGTGGATACAGATG+GGG + chr8_2:891790-891809 Msa1226510:intron 50.0%
!! GTCTGAACTCTCTGGTTCTG+TGG + chr8_2:891852-891871 Msa1226510:intron 50.0%
GGGGTGTGGAAAGTGGTTTG+AGG - chr8_2:888682-888701 None:intergenic 55.0%
AAACGGTGGGGTGTGGAAAG+TGG - chr8_2:888689-888708 None:intergenic 55.0%
CGGTGTAGGAAGTGAAACGG+TGG - chr8_2:888703-888722 None:intergenic 55.0%
! AATTTGAGATCGGCGGGGGA+AGG - chr8_2:888738-888757 None:intergenic 55.0%
! CGGAAATTTGAGATCGGCGG+GGG - chr8_2:888742-888761 None:intergenic 55.0%
CGGAGAGTTCGAGGAAGGAA+AGG - chr8_2:888790-888809 None:intergenic 55.0%
AAGAGCGGAGAGTTCGAGGA+AGG - chr8_2:888795-888814 None:intergenic 55.0%
AGAGAAGAGCGGAGAGTTCG+AGG - chr8_2:888799-888818 None:intergenic 55.0%
CCAAATTGCAGTCACGGCGA+CGG - chr8_2:888843-888862 None:intergenic 55.0%
TCGGTAACAGAGTTGCTCCG+TGG + chr8_2:888885-888904 Msa1226510:five_prime_UTR 55.0%
CTGGTGCGGTGATTAGGAGA+AGG + chr8_2:888939-888958 Msa1226510:five_prime_UTR 55.0%
!! AGAGAGTCGGTGTTGAACGG+TGG + chr8_2:888968-888987 Msa1226510:five_prime_UTR 55.0%
!! GAGAGTCGGTGTTGAACGGT+GGG + chr8_2:888969-888988 Msa1226510:five_prime_UTR 55.0%
!! AGAGTCGGTGTTGAACGGTG+GGG + chr8_2:888970-888989 Msa1226510:five_prime_UTR 55.0%
TGGGGTTTCTGTTTCGGAGG+TGG + chr8_2:888988-889007 Msa1226510:five_prime_UTR 55.0%
CTCGGAGGACACTACAGTAC+AGG - chr8_2:890678-890697 None:intergenic 55.0%
CTGTACTGTAGTGTCCTCCG+AGG + chr8_2:890676-890695 Msa1226510:intron 55.0%
GGAAGTGAAACGGTGGGGTG+TGG - chr8_2:888696-888715 None:intergenic 60.0%
GGAGTTGGAGTGGACGGTGT+AGG - chr8_2:888717-888736 None:intergenic 60.0%
GGGGAAGGAGTTGGAGTGGA+CGG - chr8_2:888723-888742 None:intergenic 60.0%
CCGTCGCCGTGACTGCAATT+TGG + chr8_2:888840-888859 Msa1226510:five_prime_UTR 60.0%
CGGTGGGGTTTCTGTTTCGG+AGG + chr8_2:888985-889004 Msa1226510:five_prime_UTR 60.0%
GGCTAATGCTCTTGCGGCCT+CGG - chr8_2:890970-890989 None:intergenic 60.0%
AGGGAGCCTCAAGTTTCCCG+TGG + chr8_2:891778-891797 Msa1226510:intron 60.0%
AGATCGGCGGGGGAAGGAGT+TGG - chr8_2:888732-888751 None:intergenic 65.0%
GGGTGTGGGTGTGCGTAGGT+GGG - chr8_2:891240-891259 None:intergenic 65.0%
TGGGTGTGGGTGTGCGTAGG+TGG - chr8_2:891241-891260 None:intergenic 65.0%
GTGTGGGTGTGGGTGTGCGT+AGG - chr8_2:891244-891263 None:intergenic 65.0%
GGCGGGGGAAGGAGTTGGAG+TGG - chr8_2:888727-888746 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 888418 892033 888418 ID=Msa1226510;Name=Msa1226510
chr8_2 mRNA 888418 892033 888418 ID=Msa1226510-mRNA-1;Parent=Msa1226510;Name=Msa1226510-mRNA-1;_AED=0.15;_eAED=0.15;_QI=837|0.66|0.5|1|0.66|1|4|0|79
chr8_2 exon 888418 889150 888418 ID=Msa1226510-mRNA-1:exon:178;Parent=Msa1226510-mRNA-1
chr8_2 exon 890942 891051 890942 ID=Msa1226510-mRNA-1:exon:179;Parent=Msa1226510-mRNA-1
chr8_2 exon 891460 891591 891460 ID=Msa1226510-mRNA-1:exon:180;Parent=Msa1226510-mRNA-1
chr8_2 exon 891932 892033 891932 ID=Msa1226510-mRNA-1:exon:181;Parent=Msa1226510-mRNA-1
chr8_2 five_prime_UTR 888418 889150 888418 ID=Msa1226510-mRNA-1:five_prime_utr;Parent=Msa1226510-mRNA-1
chr8_2 five_prime_UTR 890942 891045 890942 ID=Msa1226510-mRNA-1:five_prime_utr;Parent=Msa1226510-mRNA-1
chr8_2 CDS 891046 891051 891046 ID=Msa1226510-mRNA-1:cds;Parent=Msa1226510-mRNA-1
chr8_2 CDS 891460 891591 891460 ID=Msa1226510-mRNA-1:cds;Parent=Msa1226510-mRNA-1
chr8_2 CDS 891932 892033 891932 ID=Msa1226510-mRNA-1:cds;Parent=Msa1226510-mRNA-1
Gene Sequence

>Msa1226510

ATGCAGGAACAACAGCAAAAACAACTTGATCTCATTCTTGCAATTGCGAAGGCAGGTAAGCTATGGGAAAGCAAGCCTGAAACTAGTGAAGAACACGGTACAATAGATATGTCTAACTCAGCTGCGAATCTCAATGCGGATTACAAGGCACTCATCATCAATTTGTCACAGTTCACGTCTTTCCTTAGTTTTGCTGTAACAAAAACAGATGAATATGCATTGGTGTGGTACATACTTTAG

Protein sequence

>Msa1226510

MQEQQQKQLDLILAIAKAGKLWESKPETSEEHGTIDMSNSAANLNADYKALIINLSQFTSFLSFAVTKTDEYALVWYIL*