AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603970 MtrunA17_Chr4g0033031 98.319 238 4 0 145 382 252 489 2.13e-171 487
Msa0603970 MtrunA17_Chr4g0033031 95.946 148 6 0 1 148 1 148 4.61e-96 295
Msa0603970 MtrunA17_Chr2g0329071 72.385 239 59 5 145 382 250 482 1.63e-114 342
Msa0603970 MtrunA17_Chr2g0329071 67.333 150 43 2 1 148 1 146 8.69e-63 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603970 AT4G12070.1 54.098 244 87 4 146 378 251 480 4.97e-77 246
Msa0603970 AT4G12070.1 62.400 125 44 2 24 146 19 142 2.39e-45 162

Find 113 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCAAATGCAAGTCTTTA+TGG 0.092607 4_2:-49099019 Msa0603970:CDS
CACATGATAATGGCTGTATT+TGG 0.216961 4_2:+49098285 None:intergenic
AACAGAAACTTCAAGGTTAT+TGG 0.220695 4_2:-49098567 Msa0603970:CDS
GCTGCCTTTGTAGCATTCTA+TGG 0.255561 4_2:+49102450 None:intergenic
TTCTCCTACATGTCTTCCTT+TGG 0.262059 4_2:-49098418 Msa0603970:CDS
TTGGTATGTTACATGTTAAA+TGG 0.286946 4_2:+49097843 None:intergenic
GGTCATGGTTTGGGAAGGTT+TGG 0.307974 4_2:+49102543 None:intergenic
GTCGATGTAAGGAGAGTTTC+TGG 0.311540 4_2:+49098456 None:intergenic
GTTGATCCTAATTATCTTGT+TGG 0.311946 4_2:-49102157 Msa0603970:CDS
AGTTTACCGGCCACACGTTC+AGG 0.338159 4_2:-49098614 Msa0603970:CDS
TCTCCTACATGTCTTCCTTT+GGG 0.340994 4_2:-49098417 Msa0603970:CDS
TTGATCCTAATTATCTTGTT+GGG 0.349886 4_2:-49102156 Msa0603970:CDS
TCTCATTGTCCTCCACCAAC+TGG 0.362829 4_2:-49098163 Msa0603970:CDS
ATCGGTCCATGGTCATGGTT+TGG 0.374775 4_2:+49102533 None:intergenic
AGTATATAACATCATTTAAC+AGG 0.376442 4_2:-49098039 Msa0603970:three_prime_UTR
CAACTGGGTATGAATAAGTA+TGG 0.377698 4_2:-49098147 Msa0603970:exon
GGCTGTATTTGGTTCTCGTT+AGG 0.379960 4_2:+49098296 None:intergenic
AACCTCTTCTGTACGACTAA+TGG 0.382104 4_2:+49098871 None:intergenic
CAAGGTTATTGGTAGTTTCA+AGG 0.392429 4_2:-49098556 Msa0603970:CDS
TTGTTAGAGCTATTCGACTA+TGG 0.395369 4_2:-49098964 Msa0603970:CDS
CCATGGATGGTTTCATCAAC+CGG 0.398531 4_2:-49098512 Msa0603970:CDS
TCAGATCCTTCACATGATAA+TGG 0.400347 4_2:+49098275 None:intergenic
GGATGTCTCATTCAGATTCC+AGG 0.400593 4_2:-49098189 Msa0603970:CDS
TTCAAAGCACCTTTCAAGAA+TGG 0.401377 4_2:-49102334 Msa0603970:CDS
ATTAATATGCACAAGTGAAA+TGG 0.416623 4_2:+49097871 None:intergenic
AACTAGCAACAGAAACTTCA+AGG 0.431115 4_2:-49098574 Msa0603970:CDS
TCGGTCCATGGTCATGGTTT+GGG 0.435959 4_2:+49102534 None:intergenic
CGAAGGTAAAGAAAGTTTAC+CGG 0.439767 4_2:-49098627 Msa0603970:CDS
ATTACCACCTCAAGTTCAAT+TGG 0.440043 4_2:-49098327 Msa0603970:CDS
AACTTTAGTGTGTCGATGTA+AGG 0.445676 4_2:+49098445 None:intergenic
ATCTTGAGAGAGGCGCCGTC+GGG 0.447095 4_2:-49098211 Msa0603970:CDS
AGGAAGACATGTAGGAGAAT+AGG 0.447610 4_2:+49098422 None:intergenic
TTTGAAAATGGTTGGTCCAT+AGG 0.448038 4_2:-49097608 Msa0603970:three_prime_UTR
CATGATATACTGTATTGCTT+TGG 0.449479 4_2:-49097781 Msa0603970:three_prime_UTR
GTTCAGCTAACTCATTGATA+AGG 0.463814 4_2:-49102357 Msa0603970:CDS
GTTGAAGAGTTTCGAGTTGG+TGG 0.466680 4_2:-49102379 Msa0603970:CDS
CACAGAGGGAGACAAGGGTT+TGG 0.469242 4_2:+49098355 None:intergenic
CACTTGAAGTAGCCATTGTT+CGG 0.471202 4_2:+49098393 None:intergenic
TCGACTATGGTATGCTCCAA+TGG 0.471272 4_2:-49098951 Msa0603970:CDS
AGGTGAGTTTACTTTGTATG+TGG 0.472447 4_2:+49102576 None:intergenic
TGGAGGACAATGAGAAATCC+TGG 0.485709 4_2:+49098171 None:intergenic
TAAAGGTTCGCAGCGTATCC+AGG 0.488002 4_2:+49098110 None:intergenic
ACCGGTTTGAAGCATGTCTC+CGG 0.492866 4_2:+49102408 None:intergenic
AAAGAGAAAGTGAGAGTGAG+AGG 0.496030 4_2:+49102608 None:intergenic
ACTGTATTGCTTTGGTCTTG+AGG 0.508281 4_2:-49097773 Msa0603970:three_prime_UTR
AGAAAGTGAGAGTGAGAGGG+TGG 0.510273 4_2:+49102612 None:intergenic
AGCTGCTTTGTGATGATGAT+CGG 0.510565 4_2:+49102515 None:intergenic
ACCGGAGACATGCTTCAAAC+CGG 0.510805 4_2:-49102409 Msa0603970:CDS
CGACTATGGTATGCTCCAAT+GGG 0.516041 4_2:-49098950 Msa0603970:CDS
TCAAAGAGTCCTTCCATGGA+TGG 0.516208 4_2:-49098525 Msa0603970:CDS
CGCTGCGAACCTTTATATTG+TGG 0.520932 4_2:-49098102 Msa0603970:three_prime_UTR
ATTGAGAACTCTCCTCCCAT+TGG 0.522546 4_2:+49098935 None:intergenic
CAAATCAAAGAGTCCTTCCA+TGG 0.522589 4_2:-49098529 Msa0603970:CDS
GTATTTGGTTCTCGTTAGGA+CGG 0.522960 4_2:+49098300 None:intergenic
CTTTGTAGCATTCTATGGAT+AGG 0.525828 4_2:+49102455 None:intergenic
CTCATTGTCCTCCACCAACT+GGG 0.526561 4_2:-49098162 Msa0603970:CDS
TCAAAATCCGACGAATGGAC+CGG 0.527320 4_2:-49102427 Msa0603970:CDS
AATTGAACTTGAGGTGGTAA+TGG 0.528123 4_2:+49098329 None:intergenic
TCCATGGTCATGGTTTGGGA+AGG 0.528238 4_2:+49102538 None:intergenic
ATTTGCAATGTTGCATAAGT+CGG 0.529271 4_2:+49099033 None:intergenic
CATGTCTCCGGTCCATTCGT+CGG 0.532195 4_2:+49102420 None:intergenic
CAATGGAGTTTATTGATCCA+AGG 0.532642 4_2:+49097969 None:intergenic
ACTTATTCATACCCAGTTGG+TGG 0.536948 4_2:+49098151 None:intergenic
TGCCATTAGTCGTACAGAAG+AGG 0.540601 4_2:-49098873 Msa0603970:intron
CTTAGTCCTGAACGTGTGGC+CGG 0.540695 4_2:+49098608 None:intergenic
AGAGAGGAAGATACAAAGCT+TGG 0.545492 4_2:-49098899 Msa0603970:CDS
AGCTTGTTCAGACATAGAAA+AGG 0.546325 4_2:-49097704 Msa0603970:three_prime_UTR
GGTGAGTTTACTTTGTATGT+GGG 0.552274 4_2:+49102577 None:intergenic
GTCGTAACAACGAATTGCTC+CGG 0.553749 4_2:+49098493 None:intergenic
AAACTCTTCAACTATGTCAC+CGG 0.553772 4_2:+49102390 None:intergenic
CATCTTGAGAGAGGCGCCGT+CGG 0.566462 4_2:-49098212 Msa0603970:CDS
GATTATCACGGAGTAGACAT+TGG 0.567606 4_2:-49098989 Msa0603970:CDS
ATAGTTGAAGAGTTTCGAGT+TGG 0.572073 4_2:-49102382 Msa0603970:CDS
CCGGTTGATGAAACCATCCA+TGG 0.572978 4_2:+49098512 None:intergenic
TGATGATCGGTCCATGGTCA+TGG 0.578091 4_2:+49102528 None:intergenic
GTCACGAGAGGGTGAGTCTG+AGG 0.578216 4_2:+49102486 None:intergenic
AAGAGAAAGTGAGAGTGAGA+GGG 0.579942 4_2:+49102609 None:intergenic
AATAGAGATAAAACTTAGAG+AGG 0.581818 4_2:-49098915 Msa0603970:CDS
TATTCATACCCAGTTGGTGG+AGG 0.582970 4_2:+49098154 None:intergenic
TTTGTCTCACTTGTACGAAG+TGG 0.584541 4_2:+49098016 None:intergenic
TATTTCATTTAATTTAACAA+TGG 0.585759 4_2:+49097952 None:intergenic
CTTCCTTTGGGACCGAACAA+TGG 0.586807 4_2:-49098405 Msa0603970:CDS
TGGCAACACAGAGGGAGACA+AGG 0.590701 4_2:+49098349 None:intergenic
GCAGCTCAAAATCCGACGAA+TGG 0.595906 4_2:-49102432 Msa0603970:CDS
TATGGTTTCGAAGATTATCA+CGG 0.596693 4_2:-49099001 Msa0603970:CDS
TCACTGATATTGATATCACT+TGG 0.598472 4_2:+49098251 None:intergenic
CAGCCGACGCATCTTGAGAG+AGG 0.605141 4_2:-49098221 Msa0603970:CDS
GGTCCCAAAGGAAGACATGT+AGG 0.606339 4_2:+49098414 None:intergenic
CATACTTATTCATACCCAGT+TGG 0.606484 4_2:+49098148 None:intergenic
GGCAACACAGAGGGAGACAA+GGG 0.608189 4_2:+49098350 None:intergenic
TAGCCATTGTTCGGTCCCAA+AGG 0.609219 4_2:+49098402 None:intergenic
TTGTGATGATGATCGGTCCA+TGG 0.611510 4_2:+49102522 None:intergenic
ACCTTCCCAAACCATGACCA+TGG 0.616227 4_2:-49102539 Msa0603970:exon
TTGATGAAACCATCCATGGA+AGG 0.617269 4_2:+49098516 None:intergenic
GATGACTATGCTGAATTGCA+AGG 0.618115 4_2:-49102229 Msa0603970:CDS
GCTGAGTGCTTTCAACTCCA+AGG 0.619906 4_2:-49102115 Msa0603970:intron
TCATGCACAAGCTATCACCT+TGG 0.622291 4_2:-49097986 Msa0603970:three_prime_UTR
GGTGGTAATGGCAACACAGA+GGG 0.625903 4_2:+49098341 None:intergenic
TCTTGAGAGAGGCGCCGTCG+GGG 0.626091 4_2:-49098210 Msa0603970:CDS
ATACAGCCATTATCATGTGA+AGG 0.629607 4_2:-49098281 Msa0603970:CDS
CGGTGTGCCAATTGAACTTG+AGG 0.632200 4_2:+49098320 None:intergenic
CTATCCATAGAATGCTACAA+AGG 0.635986 4_2:-49102454 Msa0603970:CDS
GCGCCTCTCTCAAGATGCGT+CGG 0.638420 4_2:+49098218 None:intergenic
CTATGGTATGCTCCAATGGG+AGG 0.639482 4_2:-49098947 Msa0603970:CDS
ATTGCTTAGTCCTGAACGTG+TGG 0.649167 4_2:+49098604 None:intergenic
AGGACTTTGAAGTCACGAGA+GGG 0.672645 4_2:+49102475 None:intergenic
ATATCATGTATGTACAAACA+AGG 0.687023 4_2:+49097796 None:intergenic
TAGGACTTTGAAGTCACGAG+AGG 0.690395 4_2:+49102474 None:intergenic
TCATCATCAGTAATTGACGA+AGG 0.696045 4_2:-49098644 Msa0603970:CDS
TCTGAATGAGACATCCCCGA+CGG 0.711080 4_2:+49098196 None:intergenic
TGTGCCAATTGAACTTGAGG+TGG 0.723647 4_2:+49098323 None:intergenic
ATACTTGTAAGAGTACGTAG+AGG 0.736627 4_2:-49102256 Msa0603970:CDS
AGGTGGTAATGGCAACACAG+AGG 0.738008 4_2:+49098340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTAAATTTTTTTTTTA+TGG - chr4_2:49098702-49098721 Msa0603970:intron 0.0%
!! TAGATAATTAATTCAATTTA+GGG + chr4_2:49098848-49098867 None:intergenic 10.0%
!!! TATTTCATTTAATTTAACAA+TGG + chr4_2:49102274-49102293 None:intergenic 10.0%
!!! TTTTAGTAGTTTTTTAAACA+TGG - chr4_2:49098175-49098194 Msa0603970:CDS 15.0%
!! CAGTGAATTTAATAAAATTA+TGG - chr4_2:49098243-49098262 Msa0603970:CDS 15.0%
!! TTTCTTAAGAAATGTAAAAA+AGG + chr4_2:49098412-49098431 None:intergenic 15.0%
!! ATGCATATAGTAATTTAAAA+AGG - chr4_2:49098583-49098602 Msa0603970:CDS 15.0%
!! TGCATATAGTAATTTAAAAA+GGG - chr4_2:49098584-49098603 Msa0603970:CDS 15.0%
!! GTAGATAATTAATTCAATTT+AGG + chr4_2:49098849-49098868 None:intergenic 15.0%
!! AATTAAACAAATGAATGTAT+TGG - chr4_2:49098998-49099017 Msa0603970:CDS 15.0%
!! ATATTTATTATTCTAGACTT+GGG + chr4_2:49100114-49100133 None:intergenic 15.0%
!! TTTATAATATCTTCATCTAA+TGG - chr4_2:49100672-49100691 Msa0603970:intron 15.0%
!!! GTTCTATTTTCTTAAATTAT+CGG + chr4_2:49101449-49101468 None:intergenic 15.0%
!!! ACTATTAATCAGATTTTATT+TGG + chr4_2:49102167-49102186 None:intergenic 15.0%
!!! TAACTCTTCTTATTTTCATT+AGG + chr4_2:49098030-49098049 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG + chr4_2:49098493-49098512 None:intergenic 20.0%
!! ACAAGATAGTAGTATTAATT+AGG - chr4_2:49098534-49098553 Msa0603970:CDS 20.0%
!! CAAGATAGTAGTATTAATTA+GGG - chr4_2:49098535-49098554 Msa0603970:CDS 20.0%
!! AAGATAGTAGTATTAATTAG+GGG - chr4_2:49098536-49098555 Msa0603970:CDS 20.0%
!! GCATATAGTAATTTAAAAAG+GGG - chr4_2:49098585-49098604 Msa0603970:CDS 20.0%
!! GGACAAAAATAAAATCAAAT+GGG - chr4_2:49098619-49098638 Msa0603970:CDS 20.0%
!! TTAAATCACATTGAAAATGA+TGG - chr4_2:49098784-49098803 Msa0603970:intron 20.0%
!! TCATTAGTGTAGATTAAATT+TGG - chr4_2:49098896-49098915 Msa0603970:CDS 20.0%
!!! TTCATTTGTTTAATTTAACC+TGG + chr4_2:49098993-49099012 None:intergenic 20.0%
!!! GTTTTCTCCTTTTATTATTA+GGG - chr4_2:49099432-49099451 Msa0603970:intron 20.0%
!!! ATTTTGTCCCTAATAATAAA+AGG + chr4_2:49099442-49099461 None:intergenic 20.0%
!!! CAATAGATTTGTTGAAATTA+CGG - chr4_2:49099489-49099508 Msa0603970:intron 20.0%
!! ACATATTTGTAAAATCAAAC+TGG + chr4_2:49099519-49099538 None:intergenic 20.0%
!! TGTAAAAAAATCCAATTGAA+AGG - chr4_2:49099788-49099807 Msa0603970:intron 20.0%
!! GATATTTATTATTCTAGACT+TGG + chr4_2:49100115-49100134 None:intergenic 20.0%
!! CTCAAATAAATATGGTTAAA+TGG + chr4_2:49100137-49100156 None:intergenic 20.0%
!! GTTATTGTCTCAAATAAATA+TGG + chr4_2:49100145-49100164 None:intergenic 20.0%
!! TTGTGATTCTTAATACTTTA+TGG - chr4_2:49100320-49100339 Msa0603970:intron 20.0%
!!! TAATAATTTTGTGATCAACA+GGG - chr4_2:49101543-49101562 Msa0603970:intron 20.0%
!!! CTATTTTTACCACAATATAA+AGG + chr4_2:49102133-49102152 None:intergenic 20.0%
!! CTTTATATTGTGGTAAAAAT+AGG - chr4_2:49102131-49102150 Msa0603970:CDS 20.0%
!! AGTATATAACATCATTTAAC+AGG - chr4_2:49102184-49102203 Msa0603970:CDS 20.0%
!!! AGTTATTCAACTTTTGAAAA+TGG - chr4_2:49102603-49102622 Msa0603970:five_prime_UTR 20.0%
! TTGATCCTAATTATCTTGTT+GGG - chr4_2:49098067-49098086 Msa0603970:three_prime_UTR 25.0%
! AAAAACCCAACAAGATAATT+AGG + chr4_2:49098075-49098094 None:intergenic 25.0%
!! TAATTATCTTGTTGGGTTTT+TGG - chr4_2:49098074-49098093 Msa0603970:three_prime_UTR 25.0%
! AGTTAGAATTCGTGTATATT+TGG - chr4_2:49098215-49098234 Msa0603970:CDS 25.0%
!! TTATGGTTACATAGTGATTT+TGG - chr4_2:49098260-49098279 Msa0603970:CDS 25.0%
! TTAGGTTCAACTTAGATTAA+TGG + chr4_2:49098319-49098338 None:intergenic 25.0%
! AGAAATGTAAAAAAGGCAAT+AGG + chr4_2:49098405-49098424 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr4_2:49098546-49098565 Msa0603970:CDS 25.0%
! TTAAAAAGGGGTTTACATTT+AGG - chr4_2:49098597-49098616 Msa0603970:CDS 25.0%
! TAAAAAGGGGTTTACATTTA+GGG - chr4_2:49098598-49098617 Msa0603970:CDS 25.0%
! GGGACAAAAATAAAATCAAA+TGG - chr4_2:49098618-49098637 Msa0603970:CDS 25.0%
!! AACACCATTACCTTAATTTT+TGG - chr4_2:49099336-49099355 Msa0603970:intron 25.0%
! TTAATCTCATACAAATGTGA+GGG - chr4_2:49099405-49099424 Msa0603970:intron 25.0%
!! CGTTTTCTCCTTTTATTATT+AGG - chr4_2:49099431-49099450 Msa0603970:intron 25.0%
! TACAAATATGTCTCATATCA+AGG - chr4_2:49099528-49099547 Msa0603970:intron 25.0%
!!! TTGGTGCTTATTTTGTATAA+CGG + chr4_2:49099935-49099954 None:intergenic 25.0%
!! TTAATTTGAAGTGTTTGTGT+TGG + chr4_2:49099973-49099992 None:intergenic 25.0%
! TTCAATGTAATCATATGTGT+CGG - chr4_2:49100466-49100485 Msa0603970:intron 25.0%
! AATAAATTATACCAGTGCAT+AGG + chr4_2:49100562-49100581 None:intergenic 25.0%
! CACTGGTATAATTTATTAGA+AGG - chr4_2:49100565-49100584 Msa0603970:intron 25.0%
! GAATGTTCATAAAGACAATA+GGG + chr4_2:49100963-49100982 None:intergenic 25.0%
! TGAATGTTCATAAAGACAAT+AGG + chr4_2:49100964-49100983 None:intergenic 25.0%
! ATACAATTGTAAAATGGTCA+GGG + chr4_2:49101023-49101042 None:intergenic 25.0%
!! GACAAACAACAAATTTTATG+AGG + chr4_2:49101109-49101128 None:intergenic 25.0%
! AATAGAGATAAAACTTAGAG+AGG - chr4_2:49101308-49101327 Msa0603970:intron 25.0%
!! CTAATAATTTTGTGATCAAC+AGG - chr4_2:49101542-49101561 Msa0603970:intron 25.0%
! ATTAATATGCACAAGTGAAA+TGG + chr4_2:49102355-49102374 None:intergenic 25.0%
! TTGGTATGTTACATGTTAAA+TGG + chr4_2:49102383-49102402 None:intergenic 25.0%
! AAAAAGAACATGGATGATAT+TGG + chr4_2:49102402-49102421 None:intergenic 25.0%
! ATATCATGTATGTACAAACA+AGG + chr4_2:49102430-49102449 None:intergenic 25.0%
!!! TTGAGGCTTTTAATTTGTTA+GGG - chr4_2:49102467-49102486 Msa0603970:CDS 25.0%
!!! ATTCAACTTTTGAAAATGGT+TGG - chr4_2:49102607-49102626 Msa0603970:five_prime_UTR 25.0%
!!! CCATTTTTTCCATTCTTGAA+AGG + chr4_2:49097901-49097920 None:intergenic 30.0%
CCTTTCAAGAATGGAAAAAA+TGG - chr4_2:49097898-49097917 Msa0603970:three_prime_UTR 30.0%
GTTGATCCTAATTATCTTGT+TGG - chr4_2:49098066-49098085 Msa0603970:three_prime_UTR 30.0%
ATTAAGAAGTAACAGTACCT+TGG + chr4_2:49098128-49098147 None:intergenic 30.0%
TCAACTTGGAGATAACAATT+AGG + chr4_2:49098337-49098356 None:intergenic 30.0%
ATTAGGAGAACAAATCAACT+TGG + chr4_2:49098351-49098370 None:intergenic 30.0%
GCAATAGGTGACTAAATTAA+GGG + chr4_2:49098390-49098409 None:intergenic 30.0%
TCAAATGGGTACTTAGATAT+AGG - chr4_2:49098633-49098652 Msa0603970:CDS 30.0%
CAAATGGGTACTTAGATATA+GGG - chr4_2:49098634-49098653 Msa0603970:CDS 30.0%
! TCAATTTAGGGTTAAAGTTG+TGG + chr4_2:49098836-49098855 None:intergenic 30.0%
AGCAACAAAGTCACATATTA+TGG + chr4_2:49099046-49099065 None:intergenic 30.0%
ATATGTGACTTTGTTGCTAT+TGG - chr4_2:49099048-49099067 Msa0603970:intron 30.0%
GTAGTTACTTCTTAGTTACA+CGG - chr4_2:49099093-49099112 Msa0603970:intron 30.0%
!!! TTAAGGTAATGGTGTTGTTT+TGG + chr4_2:49099332-49099351 None:intergenic 30.0%
CCTACCAAAAATTAAGGTAA+TGG + chr4_2:49099343-49099362 None:intergenic 30.0%
!!! CCATTACCTTAATTTTTGGT+AGG - chr4_2:49099340-49099359 Msa0603970:intron 30.0%
AAGCTACCTACCAAAAATTA+AGG + chr4_2:49099349-49099368 None:intergenic 30.0%
AGTACTACTATCATACTATG+TGG + chr4_2:49099378-49099397 None:intergenic 30.0%
CTTAATCTCATACAAATGTG+AGG - chr4_2:49099404-49099423 Msa0603970:intron 30.0%
TCATATCAAGGTGAATTTGT+CGG - chr4_2:49099540-49099559 Msa0603970:intron 30.0%
!! TATTTTTGCTAGATCACAAG+TGG + chr4_2:49099574-49099593 None:intergenic 30.0%
!!! TTTTTTACATACGCATAAGC+CGG + chr4_2:49099777-49099796 None:intergenic 30.0%
TAACTGTGACTAATCTTCTT+CGG + chr4_2:49099846-49099865 None:intergenic 30.0%
! TATTTTGTATAACGGTAGGT+TGG + chr4_2:49099927-49099946 None:intergenic 30.0%
!!! TGCTTATTTTGTATAACGGT+AGG + chr4_2:49099931-49099950 None:intergenic 30.0%
! TTGTGTTGGATTTTCCAAAA+AGG + chr4_2:49099959-49099978 None:intergenic 30.0%
AACTTTCAATATTGTGTCTG+AGG - chr4_2:49100020-49100039 Msa0603970:intron 30.0%
TCTAAAGATGTGAAAAATGC+TGG + chr4_2:49100261-49100280 None:intergenic 30.0%
ATATCAGTTTCAACGTGTTA+GGG + chr4_2:49100425-49100444 None:intergenic 30.0%
AATATCAGTTTCAACGTGTT+AGG + chr4_2:49100426-49100445 None:intergenic 30.0%
GAAAGAAAGTTGCTAGAATT+TGG + chr4_2:49100829-49100848 None:intergenic 30.0%
ATGATTTACCTTTGTAAGCA+AGG + chr4_2:49100995-49101014 None:intergenic 30.0%
GATACAATTGTAAAATGGTC+AGG + chr4_2:49101024-49101043 None:intergenic 30.0%
TCTCGGATACAATTGTAAAA+TGG + chr4_2:49101029-49101048 None:intergenic 30.0%
! ATTTTACAATTGTATCCGAG+AGG - chr4_2:49101028-49101047 Msa0603970:intron 30.0%
GTTTGACCTTAAAATCGTAA+GGG + chr4_2:49101067-49101086 None:intergenic 30.0%
AGTTTGACCTTAAAATCGTA+AGG + chr4_2:49101068-49101087 None:intergenic 30.0%
ATTTGCAATGTTGCATAAGT+CGG + chr4_2:49101193-49101212 None:intergenic 30.0%
ATTGCAAATGCAAGTCTTTA+TGG - chr4_2:49101204-49101223 Msa0603970:intron 30.0%
TATGGTTTCGAAGATTATCA+CGG - chr4_2:49101222-49101241 Msa0603970:intron 30.0%
GCATGTATGAAAAATTCAGT+GGG + chr4_2:49101383-49101402 None:intergenic 30.0%
AGCATGTATGAAAAATTCAG+TGG + chr4_2:49101384-49101403 None:intergenic 30.0%
AACAGAAACTTCAAGGTTAT+TGG - chr4_2:49101656-49101675 Msa0603970:intron 30.0%
TCACTGATATTGATATCACT+TGG + chr4_2:49101975-49101994 None:intergenic 30.0%
CATGATATACTGTATTGCTT+TGG - chr4_2:49102442-49102461 Msa0603970:CDS 30.0%
!!! CTTGAGGCTTTTAATTTGTT+AGG - chr4_2:49102466-49102485 Msa0603970:CDS 30.0%
!!! AATTGCTTTTTGTGCTTAGT+AGG - chr4_2:49102558-49102577 Msa0603970:five_prime_UTR 30.0%
GGTGAGTTTACTTTGTATGT+GGG + chr4_2:49097649-49097668 None:intergenic 35.0%
AGGTGAGTTTACTTTGTATG+TGG + chr4_2:49097650-49097669 None:intergenic 35.0%
!! GAAGGTTTGGATTTTGTTTG+AGG + chr4_2:49097670-49097689 None:intergenic 35.0%
CTTTGTAGCATTCTATGGAT+AGG + chr4_2:49097771-49097790 None:intergenic 35.0%
CTATCCATAGAATGCTACAA+AGG - chr4_2:49097769-49097788 Msa0603970:three_prime_UTR 35.0%
AAACTCTTCAACTATGTCAC+CGG + chr4_2:49097836-49097855 None:intergenic 35.0%
! ATAGTTGAAGAGTTTCGAGT+TGG - chr4_2:49097841-49097860 Msa0603970:three_prime_UTR 35.0%
GTTCAGCTAACTCATTGATA+AGG - chr4_2:49097866-49097885 Msa0603970:three_prime_UTR 35.0%
! TTCAAAGCACCTTTCAAGAA+TGG - chr4_2:49097889-49097908 Msa0603970:three_prime_UTR 35.0%
! ATACTTGTAAGAGTACGTAG+AGG - chr4_2:49097967-49097986 Msa0603970:three_prime_UTR 35.0%
TAGGTGACTAAATTAAGGGA+CGG + chr4_2:49098386-49098405 None:intergenic 35.0%
GGCAATAGGTGACTAAATTA+AGG + chr4_2:49098391-49098410 None:intergenic 35.0%
TACTTAGATATAGGGAAGGA+GGG - chr4_2:49098642-49098661 Msa0603970:CDS 35.0%
! TATTTGATGTGTCGATATCC+AGG - chr4_2:49098972-49098991 Msa0603970:CDS 35.0%
! CTATTGGTTGGTTGATTAGT+CGG - chr4_2:49099064-49099083 Msa0603970:intron 35.0%
TTACTTCTTAGTTACACGGT+TGG - chr4_2:49099097-49099116 Msa0603970:intron 35.0%
CTTACAGCTACTAACAAGTA+CGG - chr4_2:49099218-49099237 Msa0603970:intron 35.0%
!!! ATGGTGTTGTTTTGGCAAAT+GGG + chr4_2:49099324-49099343 None:intergenic 35.0%
!!! AATGGTGTTGTTTTGGCAAA+TGG + chr4_2:49099325-49099344 None:intergenic 35.0%
!!! TTTTTGGTAGGTAGCTTGTT+TGG - chr4_2:49099352-49099371 Msa0603970:intron 35.0%
AACTGTGACTAATCTTCTTC+GGG + chr4_2:49099845-49099864 None:intergenic 35.0%
!!! TTTTCGGGTTACTACGATAT+AGG + chr4_2:49099890-49099909 None:intergenic 35.0%
ATATCGTAGTAACCCGAAAA+CGG - chr4_2:49099890-49099909 Msa0603970:intron 35.0%
! AAATAAGCACCAAGCCTTTT+TGG - chr4_2:49099942-49099961 Msa0603970:intron 35.0%
! TTGGATTTTCCAAAAAGGCT+TGG + chr4_2:49099954-49099973 None:intergenic 35.0%
TATTATTCTAGACTTGGGTC+AGG + chr4_2:49100109-49100128 None:intergenic 35.0%
ATGAGTAACACGTAACTTGA+TGG + chr4_2:49100205-49100224 None:intergenic 35.0%
!! CATTAGCCTTGATCTATACA+CGG - chr4_2:49100379-49100398 Msa0603970:intron 35.0%
CTTTAGCCCTTGATTGAATA+CGG - chr4_2:49100529-49100548 Msa0603970:intron 35.0%
ACTAGACCGTATTCAATCAA+GGG + chr4_2:49100538-49100557 None:intergenic 35.0%
CACTTGTGTGTATCAAACAA+AGG + chr4_2:49100606-49100625 None:intergenic 35.0%
! AACTGTACTTTTCAGCTTCA+AGG - chr4_2:49100707-49100726 Msa0603970:intron 35.0%
ACAAAAACCCGAATACAAGA+CGG - chr4_2:49100754-49100773 Msa0603970:intron 35.0%
ACACAAATCCGTCTTGTATT+CGG + chr4_2:49100765-49100784 None:intergenic 35.0%
!! AGCTTTGGGAAGAAGTAATA+TGG + chr4_2:49100851-49100870 None:intergenic 35.0%
!!! AAGGTCAAACTTTTGCTGTT+AGG - chr4_2:49101077-49101096 Msa0603970:intron 35.0%
TTGTATCTGTGACAGATATC+TGG - chr4_2:49101129-49101148 Msa0603970:intron 35.0%
TTGTTAGAGCTATTCGACTA+TGG - chr4_2:49101259-49101278 Msa0603970:intron 35.0%
TCATCATCAGTAATTGACGA+AGG - chr4_2:49101579-49101598 Msa0603970:intron 35.0%
CGAAGGTAAAGAAAGTTTAC+CGG - chr4_2:49101596-49101615 Msa0603970:intron 35.0%
AACTAGCAACAGAAACTTCA+AGG - chr4_2:49101649-49101668 Msa0603970:intron 35.0%
! CAAGGTTATTGGTAGTTTCA+AGG - chr4_2:49101667-49101686 Msa0603970:intron 35.0%
! AACTTTAGTGTGTCGATGTA+AGG + chr4_2:49101781-49101800 None:intergenic 35.0%
AATTGAACTTGAGGTGGTAA+TGG + chr4_2:49101897-49101916 None:intergenic 35.0%
ATTACCACCTCAAGTTCAAT+TGG - chr4_2:49101896-49101915 Msa0603970:intron 35.0%
!! CACATGATAATGGCTGTATT+TGG + chr4_2:49101941-49101960 None:intergenic 35.0%
ATACAGCCATTATCATGTGA+AGG - chr4_2:49101942-49101961 Msa0603970:intron 35.0%
TCAGATCCTTCACATGATAA+TGG + chr4_2:49101951-49101970 None:intergenic 35.0%
CATACTTATTCATACCCAGT+TGG + chr4_2:49102078-49102097 None:intergenic 35.0%
CAACTGGGTATGAATAAGTA+TGG - chr4_2:49102076-49102095 Msa0603970:intron 35.0%
CAATGGAGTTTATTGATCCA+AGG + chr4_2:49102257-49102276 None:intergenic 35.0%
!!! ACAACTGTCGTTTTCATCAT+TGG + chr4_2:49102319-49102338 None:intergenic 35.0%
CAAGGTGAACAAAAAGAACA+TGG + chr4_2:49102412-49102431 None:intergenic 35.0%
! AGCTTGTTCAGACATAGAAA+AGG - chr4_2:49102519-49102538 Msa0603970:CDS 35.0%
! TTTTTGTGCTTAGTAGGTAG+TGG - chr4_2:49102564-49102583 Msa0603970:five_prime_UTR 35.0%
AAGAGAAAGTGAGAGTGAGA+GGG + chr4_2:49097617-49097636 None:intergenic 40.0%
AAAGAGAAAGTGAGAGTGAG+AGG + chr4_2:49097618-49097637 None:intergenic 40.0%
! AGCTGCTTTGTGATGATGAT+CGG + chr4_2:49097711-49097730 None:intergenic 40.0%
GATGACTATGCTGAATTGCA+AGG - chr4_2:49097994-49098013 Msa0603970:three_prime_UTR 40.0%
GACGGAGGGAGTAAAAAATT+AGG + chr4_2:49098368-49098387 None:intergenic 40.0%
TGACTAAATTAAGGGACGGA+GGG + chr4_2:49098382-49098401 None:intergenic 40.0%
TGGGTACTTAGATATAGGGA+AGG - chr4_2:49098638-49098657 Msa0603970:CDS 40.0%
GTACTTAGATATAGGGAAGG+AGG - chr4_2:49098641-49098660 Msa0603970:CDS 40.0%
!!! TTTTTTGCACGAAGACTTCG+TGG + chr4_2:49098732-49098751 None:intergenic 40.0%
! GTGACTTTGTTGCTATTGGT+TGG - chr4_2:49099052-49099071 Msa0603970:intron 40.0%
! CGTACTTGTTAGTAGCTGTA+AGG + chr4_2:49099220-49099239 None:intergenic 40.0%
! CGACAGGTAATAAAAGCACA+CGG - chr4_2:49099247-49099266 Msa0603970:intron 40.0%
!!! TGGTGTTGTTTTGGCAAATG+GGG + chr4_2:49099323-49099342 None:intergenic 40.0%
AGGTGAATTTGTCGGAACTA+TGG - chr4_2:49099548-49099567 Msa0603970:intron 40.0%
CGTTGCTACCAACAATAGAT+TGG - chr4_2:49099698-49099717 Msa0603970:intron 40.0%
CACTTGGACCAATCTATTGT+TGG + chr4_2:49099709-49099728 None:intergenic 40.0%
! CAACAATAGATTGGTCCAAG+TGG - chr4_2:49099707-49099726 Msa0603970:intron 40.0%
GTCTCAAGTCATTTACCACT+TGG + chr4_2:49099725-49099744 None:intergenic 40.0%
ACATCCAACCACATGCTTAA+GGG + chr4_2:49099747-49099766 None:intergenic 40.0%
AACATCCAACCACATGCTTA+AGG + chr4_2:49099748-49099767 None:intergenic 40.0%
GTGGATTCTCTCCTTTCAAT+TGG + chr4_2:49099802-49099821 None:intergenic 40.0%
AACATGTGGGACATACAAAG+TGG + chr4_2:49099821-49099840 None:intergenic 40.0%
ACTGTGACTAATCTTCTTCG+GGG + chr4_2:49099844-49099863 None:intergenic 40.0%
TAGTCACAGTTAAGCAGCAA+TGG - chr4_2:49099854-49099873 Msa0603970:intron 40.0%
TAGATGTCTATGTCAGACAC+AGG + chr4_2:49100234-49100253 None:intergenic 40.0%
GCTAAAGCACAGATACTTCT+CGG + chr4_2:49100516-49100535 None:intergenic 40.0%
CACTAGACCGTATTCAATCA+AGG + chr4_2:49100539-49100558 None:intergenic 40.0%
CACAAATCCGTCTTGTATTC+GGG + chr4_2:49100764-49100783 None:intergenic 40.0%
TTAATGCAGCTCAAGCTTCA+GGG - chr4_2:49100935-49100954 Msa0603970:intron 40.0%
TACCTTTGTAAGCAAGGACT+CGG + chr4_2:49100989-49101008 None:intergenic 40.0%
! CTCTGTCCCTTACGATTTTA+AGG - chr4_2:49101058-49101077 Msa0603970:intron 40.0%
GATTATCACGGAGTAGACAT+TGG - chr4_2:49101234-49101253 Msa0603970:intron 40.0%
AGAGAGGAAGATACAAAGCT+TGG - chr4_2:49101324-49101343 Msa0603970:intron 40.0%
AACCTCTTCTGTACGACTAA+TGG + chr4_2:49101355-49101374 None:intergenic 40.0%
TTCGACACTTCAAACTCGAT+CGG + chr4_2:49101471-49101490 None:intergenic 40.0%
CAAATCAAAGAGTCCTTCCA+TGG - chr4_2:49101694-49101713 Msa0603970:intron 40.0%
TTGATGAAACCATCCATGGA+AGG + chr4_2:49101710-49101729 None:intergenic 40.0%
AGGAAGACATGTAGGAGAAT+AGG + chr4_2:49101804-49101823 None:intergenic 40.0%
TTCTCCTACATGTCTTCCTT+TGG - chr4_2:49101805-49101824 Msa0603970:intron 40.0%
TCTCCTACATGTCTTCCTTT+GGG - chr4_2:49101806-49101825 Msa0603970:intron 40.0%
CACTTGAAGTAGCCATTGTT+CGG + chr4_2:49101833-49101852 None:intergenic 40.0%
!! GTATTTGGTTCTCGTTAGGA+CGG + chr4_2:49101926-49101945 None:intergenic 40.0%
ACTTATTCATACCCAGTTGG+TGG + chr4_2:49102075-49102094 None:intergenic 40.0%
TTTGTCTCACTTGTACGAAG+TGG + chr4_2:49102210-49102229 None:intergenic 40.0%
!! ACTGTATTGCTTTGGTCTTG+AGG - chr4_2:49102450-49102469 Msa0603970:CDS 40.0%
! TTGTGATGATGATCGGTCCA+TGG + chr4_2:49097704-49097723 None:intergenic 45.0%
!! AGGACTTTGAAGTCACGAGA+GGG + chr4_2:49097751-49097770 None:intergenic 45.0%
!! TAGGACTTTGAAGTCACGAG+AGG + chr4_2:49097752-49097771 None:intergenic 45.0%
GCTGCCTTTGTAGCATTCTA+TGG + chr4_2:49097776-49097795 None:intergenic 45.0%
TCAAAATCCGACGAATGGAC+CGG - chr4_2:49097796-49097815 Msa0603970:three_prime_UTR 45.0%
!! GTTGAAGAGTTTCGAGTTGG+TGG - chr4_2:49097844-49097863 Msa0603970:three_prime_UTR 45.0%
GTGACTAAATTAAGGGACGG+AGG + chr4_2:49098383-49098402 None:intergenic 45.0%
! TTGGTTGATTAGTCGGCAGA+TGG - chr4_2:49099071-49099090 Msa0603970:intron 45.0%
!!! GTTACACGGTTGGTCTTTTC+TGG - chr4_2:49099107-49099126 Msa0603970:intron 45.0%
ACTTGAGACCCTTAAGCATG+TGG - chr4_2:49099736-49099755 Msa0603970:intron 45.0%
GTGGTTGGATGTTCGATTTC+CGG - chr4_2:49099755-49099774 Msa0603970:intron 45.0%
ATCTTCTTCGGGGAACATGT+GGG + chr4_2:49099834-49099853 None:intergenic 45.0%
AATCTTCTTCGGGGAACATG+TGG + chr4_2:49099835-49099854 None:intergenic 45.0%
CGGGTTACTACGATATAGGT+AGG + chr4_2:49099886-49099905 None:intergenic 45.0%
! ACCCGAAAACGGTGTGATTT+TGG - chr4_2:49099901-49099920 Msa0603970:intron 45.0%
! GCCAAAATCACACCGTTTTC+GGG + chr4_2:49099905-49099924 None:intergenic 45.0%
! GGCCAAAATCACACCGTTTT+CGG + chr4_2:49099906-49099925 None:intergenic 45.0%
CTTGATCTATACACGGACAC+CGG - chr4_2:49100386-49100405 Msa0603970:intron 45.0%
TTAGGGTTTGTGTTCGTGTC+CGG + chr4_2:49100408-49100427 None:intergenic 45.0%
TTTCAGCTTCAAGGAGCAGT+AGG - chr4_2:49100716-49100735 Msa0603970:intron 45.0%
ACGGATTTGTGTCGTATCCA+TGG - chr4_2:49100773-49100792 Msa0603970:intron 45.0%
CGGATTTGTGTCGTATCCAT+GGG - chr4_2:49100774-49100793 Msa0603970:intron 45.0%
! GCGACTCTATCTGAAGCTTT+GGG + chr4_2:49100865-49100884 None:intergenic 45.0%
! AGCGACTCTATCTGAAGCTT+TGG + chr4_2:49100866-49100885 None:intergenic 45.0%
ATTAAGCCATGCGTTTGCTC+GGG + chr4_2:49100920-49100939 None:intergenic 45.0%
CATTAAGCCATGCGTTTGCT+CGG + chr4_2:49100921-49100940 None:intergenic 45.0%
CTTAATGCAGCTCAAGCTTC+AGG - chr4_2:49100934-49100953 Msa0603970:intron 45.0%
TAATGCAGCTCAAGCTTCAG+GGG - chr4_2:49100936-49100955 Msa0603970:intron 45.0%
AACCGAGTCCTTGCTTACAA+AGG - chr4_2:49100984-49101003 Msa0603970:intron 45.0%
GGACAGAGTTCAAATCCTCT+CGG + chr4_2:49101046-49101065 None:intergenic 45.0%
CTTCTTCCACGGTAAATGCA+GGG - chr4_2:49101160-49101179 Msa0603970:intron 45.0%
TAATGACCCTGCATTTACCG+TGG + chr4_2:49101169-49101188 None:intergenic 45.0%
TCGACTATGGTATGCTCCAA+TGG - chr4_2:49101272-49101291 Msa0603970:intron 45.0%
CGACTATGGTATGCTCCAAT+GGG - chr4_2:49101273-49101292 Msa0603970:intron 45.0%
ATTGAGAACTCTCCTCCCAT+TGG + chr4_2:49101291-49101310 None:intergenic 45.0%
TGCCATTAGTCGTACAGAAG+AGG - chr4_2:49101350-49101369 Msa0603970:intron 45.0%
!! ATCGGTGTCAGTGTTGTGTT+AGG + chr4_2:49101431-49101450 None:intergenic 45.0%
ATTGCTTAGTCCTGAACGTG+TGG + chr4_2:49101622-49101641 None:intergenic 45.0%
TCAAAGAGTCCTTCCATGGA+TGG - chr4_2:49101698-49101717 Msa0603970:intron 45.0%
CCATGGATGGTTTCATCAAC+CGG - chr4_2:49101711-49101730 Msa0603970:intron 45.0%
GTCGTAACAACGAATTGCTC+CGG + chr4_2:49101733-49101752 None:intergenic 45.0%
GTCGATGTAAGGAGAGTTTC+TGG + chr4_2:49101770-49101789 None:intergenic 45.0%
TGTGCCAATTGAACTTGAGG+TGG + chr4_2:49101903-49101922 None:intergenic 45.0%
!! GGCTGTATTTGGTTCTCGTT+AGG + chr4_2:49101930-49101949 None:intergenic 45.0%
GGATGTCTCATTCAGATTCC+AGG - chr4_2:49102034-49102053 Msa0603970:intron 45.0%
TGGAGGACAATGAGAAATCC+TGG + chr4_2:49102055-49102074 None:intergenic 45.0%
!! TATTCATACCCAGTTGGTGG+AGG + chr4_2:49102072-49102091 None:intergenic 45.0%
CGCTGCGAACCTTTATATTG+TGG - chr4_2:49102121-49102140 Msa0603970:CDS 45.0%
TCATGCACAAGCTATCACCT+TGG - chr4_2:49102237-49102256 Msa0603970:CDS 45.0%
!!! AATTTTTATTAAATTTTTCT+TGG - chr4_2:49099185-49099204 Msa0603970:intron 5.0%
AGAAAGTGAGAGTGAGAGGG+TGG + chr4_2:49097614-49097633 None:intergenic 50.0%
! GGTCATGGTTTGGGAAGGTT+TGG + chr4_2:49097683-49097702 None:intergenic 50.0%
ACCTTCCCAAACCATGACCA+TGG - chr4_2:49097684-49097703 Msa0603970:three_prime_UTR 50.0%
! TCCATGGTCATGGTTTGGGA+AGG + chr4_2:49097688-49097707 None:intergenic 50.0%
TCGGTCCATGGTCATGGTTT+GGG + chr4_2:49097692-49097711 None:intergenic 50.0%
ATCGGTCCATGGTCATGGTT+TGG + chr4_2:49097693-49097712 None:intergenic 50.0%
TGATGATCGGTCCATGGTCA+TGG + chr4_2:49097698-49097717 None:intergenic 50.0%
GCAGCTCAAAATCCGACGAA+TGG - chr4_2:49097791-49097810 Msa0603970:three_prime_UTR 50.0%
ACCGGAGACATGCTTCAAAC+CGG - chr4_2:49097814-49097833 Msa0603970:three_prime_UTR 50.0%
!! ACCGGTTTGAAGCATGTCTC+CGG + chr4_2:49097818-49097837 None:intergenic 50.0%
GCTGAGTGCTTTCAACTCCA+AGG - chr4_2:49098108-49098127 Msa0603970:three_prime_UTR 50.0%
GAGACCCTTAAGCATGTGGT+TGG - chr4_2:49099740-49099759 Msa0603970:intron 50.0%
CGGTGTCCGTGTATAGATCA+AGG + chr4_2:49100388-49100407 None:intergenic 50.0%
!! ATATGTGTCGGTGTCGACAC+TGG - chr4_2:49100478-49100497 Msa0603970:intron 50.0%
!! TATGTGTCGGTGTCGACACT+GGG - chr4_2:49100479-49100498 Msa0603970:intron 50.0%
AGCTTCAAGGAGCAGTAGGA+TGG - chr4_2:49100720-49100739 Msa0603970:intron 50.0%
TTGTGTCGTATCCATGGGAG+AGG - chr4_2:49100779-49100798 Msa0603970:intron 50.0%
CGCTTCTCGCTACAATGATG+TGG - chr4_2:49100882-49100901 Msa0603970:intron 50.0%
TGGAGAGACAGCTTCTTCCA+CGG - chr4_2:49101149-49101168 Msa0603970:intron 50.0%
GCTTCTTCCACGGTAAATGC+AGG - chr4_2:49101159-49101178 Msa0603970:intron 50.0%
CTATGGTATGCTCCAATGGG+AGG - chr4_2:49101276-49101295 Msa0603970:intron 50.0%
!! CCGGTTGATGAAACCATCCA+TGG + chr4_2:49101714-49101733 None:intergenic 50.0%
GGTCCCAAAGGAAGACATGT+AGG + chr4_2:49101812-49101831 None:intergenic 50.0%
!! CTTCCTTTGGGACCGAACAA+TGG - chr4_2:49101818-49101837 Msa0603970:intron 50.0%
TAGCCATTGTTCGGTCCCAA+AGG + chr4_2:49101824-49101843 None:intergenic 50.0%
!! GGTGGTAATGGCAACACAGA+GGG + chr4_2:49101885-49101904 None:intergenic 50.0%
!! AGGTGGTAATGGCAACACAG+AGG + chr4_2:49101886-49101905 None:intergenic 50.0%
CGGTGTGCCAATTGAACTTG+AGG + chr4_2:49101906-49101925 None:intergenic 50.0%
TCTGAATGAGACATCCCCGA+CGG + chr4_2:49102030-49102049 None:intergenic 50.0%
TCTCATTGTCCTCCACCAAC+TGG - chr4_2:49102060-49102079 Msa0603970:intron 50.0%
CTCATTGTCCTCCACCAACT+GGG - chr4_2:49102061-49102080 Msa0603970:intron 50.0%
TAAAGGTTCGCAGCGTATCC+AGG + chr4_2:49102116-49102135 None:intergenic 50.0%
CATGTCTCCGGTCCATTCGT+CGG + chr4_2:49097806-49097825 None:intergenic 55.0%
ACAAGTACGGCTACAGCGAC+AGG - chr4_2:49099231-49099250 Msa0603970:intron 55.0%
ACGGTCTAGTGCCTATGCAC+TGG - chr4_2:49100548-49100567 Msa0603970:intron 55.0%
TGTCGTATCCATGGGAGAGG+AGG - chr4_2:49100782-49100801 Msa0603970:intron 55.0%
AGTTTACCGGCCACACGTTC+AGG - chr4_2:49101609-49101628 Msa0603970:intron 55.0%
CTTAGTCCTGAACGTGTGGC+CGG + chr4_2:49101618-49101637 None:intergenic 55.0%
CACAGAGGGAGACAAGGGTT+TGG + chr4_2:49101871-49101890 None:intergenic 55.0%
GGCAACACAGAGGGAGACAA+GGG + chr4_2:49101876-49101895 None:intergenic 55.0%
TGGCAACACAGAGGGAGACA+AGG + chr4_2:49101877-49101896 None:intergenic 55.0%
GTCACGAGAGGGTGAGTCTG+AGG + chr4_2:49097740-49097759 None:intergenic 60.0%
TCCATGGGAGAGGAGGATGC+AGG - chr4_2:49100789-49100808 Msa0603970:intron 60.0%
TCCTGCATCCTCCTCTCCCA+TGG + chr4_2:49100793-49100812 None:intergenic 60.0%
CACTAGCCCGAGCAAACGCA+TGG - chr4_2:49100911-49100930 Msa0603970:intron 60.0%
CAGCCGACGCATCTTGAGAG+AGG - chr4_2:49102002-49102021 Msa0603970:intron 60.0%
GCGCCTCTCTCAAGATGCGT+CGG + chr4_2:49102008-49102027 None:intergenic 60.0%
!! CATCTTGAGAGAGGCGCCGT+CGG - chr4_2:49102011-49102030 Msa0603970:intron 60.0%
!! ATCTTGAGAGAGGCGCCGTC+GGG - chr4_2:49102012-49102031 Msa0603970:intron 60.0%
!! TCTTGAGAGAGGCGCCGTCG+GGG - chr4_2:49102013-49102032 Msa0603970:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 49097608 49102637 49097608 ID=Msa0603970;Name=Msa0603970
chr4_2 mRNA 49097608 49102637 49097608 ID=Msa0603970-mRNA-1;Parent=Msa0603970;Name=Msa0603970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=89|0.5|0.66|1|1|1|3|549|382
chr4_2 exon 49097608 49098681 49097608 ID=Msa0603970-mRNA-1:exon:11364;Parent=Msa0603970-mRNA-1
chr4_2 exon 49098874 49099064 49098874 ID=Msa0603970-mRNA-1:exon:11363;Parent=Msa0603970-mRNA-1
chr4_2 exon 49102116 49102637 49102116 ID=Msa0603970-mRNA-1:exon:11362;Parent=Msa0603970-mRNA-1
chr4_2 five_prime_UTR 49102549 49102637 49102549 ID=Msa0603970-mRNA-1:five_prime_utr;Parent=Msa0603970-mRNA-1
chr4_2 CDS 49102116 49102548 49102116 ID=Msa0603970-mRNA-1:cds;Parent=Msa0603970-mRNA-1
chr4_2 CDS 49098874 49099064 49098874 ID=Msa0603970-mRNA-1:cds;Parent=Msa0603970-mRNA-1
chr4_2 CDS 49098157 49098681 49098157 ID=Msa0603970-mRNA-1:cds;Parent=Msa0603970-mRNA-1
chr4_2 three_prime_UTR 49097608 49098156 49097608 ID=Msa0603970-mRNA-1:three_prime_utr;Parent=Msa0603970-mRNA-1
Gene Sequence

>Msa0603970

ATGACCATGGACCGATCATCATCACAAAGCAGCTCAAAATCCTCAGACTCACCCTCTCGTGACTTCAAAGTCCTATCCATAGAATGCTACAAAGGCAGCTCAAAATCCGACGAATGGACCGGAGACATGCTTCAAACCGGTGACATAGTTGAAGAGTTTCGAGTTGGTGGTTCAGCTAACTCATTGATAAGGTTCAAAGCACCTTTCAAGAATGGAAAAAATGGTGTAAATAAGATTCTTCAAGAAGCTTATAAGAAGAAAGATACTTCTATACTTGTAAGAGTACGTAGAGGAGTTGATGACTATGCTGAATTGCAAGGTTGTATTGTTCCTAATGAAAATAAGAAGAGTTATGTTCTTAGAGATATTGTTGATCCTAATTATCTTGTTGGGTTTTTGGATCGAACTGAAGCTGAGTGCTTTCAACTCCAAGGGTCATTATCCGACTTATGCAACATTGCAAATGCAAGTCTTTATGGTTTCGAAGATTATCACGGAGTAGACATTGGCGTTGTTAGAGCTATTCGACTATGGTATGCTCCAATGGGAGGAGAGTTCTCAATAGAGATAAAACTTAGAGAGGAAGATACAAAGCTTGGCTTTGCCATTAGTCGTACAGAAGAGGGTTTTATATTCATCTCATCATCAGTAATTGACGAAGGTAAAGAAAGTTTACCGGCCACACGTTCAGGACTAAGCAATCTATACAAACTAGCAACAGAAACTTCAAGGTTATTGGTAGTTTCAAGGCTTTCAAATCAAAGAGTCCTTCCATGGATGGTTTCATCAACCGGAGCAATTCGTTGTTACGACACTGTTTCATTGAGCCAGAAACTCTCCTTACATCGACACACTAAAGTTCCTATTCTCCTACATGTCTTCCTTTGGGACCGAACAATGGCTACTTCAAGTGCAGAAAGTACAAAATCCAAACCCTTGTCTCCCTCTGTGTTGCCATTACCACCTCAAGTTCAATTGGCACACCGTCCTAACGAGAACCAAATACAGCCATTATCATGTGAAGGATCTGATCCAAGTGATATCAATATCAGTGATAGTTCTCAGCCGACGCATCTTGAGAGAGGCGCCGTCGGGGATGTCTCATTCAGATTCCAGGATTTCTCATTGTCCTCCACCAACTGGGTATGA
Protein sequence

>Msa0603970

MTMDRSSSQSSSKSSDSPSRDFKVLSIECYKGSSKSDEWTGDMLQTGDIVEEFRVGGSANSLIRFKAPFKNGKNGVNKILQEAYKKKDTSILVRVRRGVDDYAELQGCIVPNENKKSYVLRDIVDPNYLVGFLDRTEAECFQLQGSLSDLCNIANASLYGFEDYHGVDIGVVRAIRLWYAPMGGEFSIEIKLREEDTKLGFAISRTEEGFIFISSSVIDEGKESLPATRSGLSNLYKLATETSRLLVVSRLSNQRVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTKVPILLHVFLWDRTMATSSAESTKSKPLSPSVLPLPPQVQLAHRPNENQIQPLSCEGSDPSDINISDSSQPTHLERGAVGDVSFRFQDFSLSSTNWV*