AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549010 MtrunA17_Chr4g0033031 97.479 238 6 0 145 382 252 489 2.25e-170 484
Msa0549010 MtrunA17_Chr4g0033031 97.973 148 3 0 1 148 1 148 1.22e-97 299
Msa0549010 MtrunA17_Chr2g0329071 72.385 239 59 5 145 382 250 482 2.40e-114 342
Msa0549010 MtrunA17_Chr2g0329071 68.667 150 41 2 1 148 1 146 4.69e-64 212
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549010 AT4G12070.1 54.098 244 87 4 146 378 251 480 3.53e-77 246
Msa0549010 AT4G12070.1 62.400 125 44 2 24 146 19 142 1.46e-45 163

Find 111 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCAAATGCAAGTCTTTA+TGG 0.092607 4_1:-43760822 Msa0549010:CDS
CCTTTATATTGTGGTAAAAT+AGG 0.179969 4_1:-43759894 Msa0549010:three_prime_UTR
CACATGATAATGGCTGTATT+TGG 0.216961 4_1:+43760086 None:intergenic
AACAGAAACTTCAAGGTTAT+TGG 0.220695 4_1:-43760368 Msa0549010:CDS
GCTGCCTTTGTAGCATTCTA+TGG 0.255561 4_1:+43764406 None:intergenic
TTCTCCTACATGTCTTCCTT+TGG 0.262059 4_1:-43760219 Msa0549010:CDS
TTGGTATGTTACATGTTAAA+TGG 0.286946 4_1:+43759645 None:intergenic
ATCGGTCCATGGTCATGTTT+TGG 0.291842 4_1:+43764489 None:intergenic
GTCGATGTAAGGAGAGTTTC+TGG 0.311540 4_1:+43760257 None:intergenic
GTTGATCCTAATTATCTTGT+TGG 0.311946 4_1:-43764113 Msa0549010:CDS
AGTTTACCGGCCACACGTTC+AGG 0.338159 4_1:-43760415 Msa0549010:CDS
TCTCCTACATGTCTTCCTTT+GGG 0.340994 4_1:-43760218 Msa0549010:CDS
TAACTCTTCTTATTCTCATT+AGG 0.341103 4_1:+43764152 None:intergenic
TTGATCCTAATTATCTTGTT+GGG 0.349886 4_1:-43764112 Msa0549010:CDS
TCTCATTGTCCTCCACCAAC+TGG 0.362829 4_1:-43759964 Msa0549010:CDS
GGATGTCTCATTCAGATTCC+AGG 0.377533 4_1:-43759990 Msa0549010:CDS
CAACTGGGTATGAATAAGTA+TGG 0.377698 4_1:-43759948 Msa0549010:exon
GGCTGTATTTGGTTCTCGTT+AGG 0.379960 4_1:+43760097 None:intergenic
AACCTCTTCTGTACGACTAA+TGG 0.382104 4_1:+43760674 None:intergenic
AGTATATAACATCATTTAAC+AGG 0.384911 4_1:-43759841 Msa0549010:three_prime_UTR
ATCTTGAGAGAGGTGCCGTT+GGG 0.389150 4_1:-43760012 Msa0549010:CDS
TTAGATCCTTCACATGATAA+TGG 0.391394 4_1:+43760076 None:intergenic
CAAGGTTATTGGTAGTTTCA+AGG 0.392429 4_1:-43760357 Msa0549010:CDS
CCATGGATGGTTTCATCAAC+CGG 0.398531 4_1:-43760313 Msa0549010:CDS
TTGTTAGAGCAATTCGACTA+TGG 0.399167 4_1:-43760767 Msa0549010:CDS
TTCAAAGCACCTTTCAAGAA+TGG 0.401377 4_1:-43764290 Msa0549010:CDS
ATTAATATGCACAAGTGAAA+TGG 0.416623 4_1:+43759673 None:intergenic
AACTAGCAACAGAAACTTCA+AGG 0.431115 4_1:-43760375 Msa0549010:CDS
CGAAGGTAAAGAAAGTTTAC+CGG 0.439767 4_1:-43760428 Msa0549010:CDS
ATTACCACCTCAAGTTCAAT+TGG 0.440043 4_1:-43760128 Msa0549010:CDS
AACTTTAGTGTGTCGATGTA+AGG 0.445676 4_1:+43760246 None:intergenic
AGGAAGACATGTAGGAGAAT+AGG 0.447610 4_1:+43760223 None:intergenic
TTTGAAAATGGTTGGTCCAT+AGG 0.448038 4_1:-43759410 Msa0549010:three_prime_UTR
CATGATATACTGTATTGCTT+TGG 0.449479 4_1:-43759583 Msa0549010:three_prime_UTR
GTTCAGCTAACTCATTGATA+AGG 0.463814 4_1:-43764313 Msa0549010:CDS
GTTGAAGAGTTTCGAGTTGG+TGG 0.466680 4_1:-43764335 Msa0549010:CDS
CACAGAGGGAGACAAGGGTT+TGG 0.469242 4_1:+43760156 None:intergenic
CACTTGAAGTAGCCATTGTT+CGG 0.471202 4_1:+43760194 None:intergenic
AGGTGAGTTTACTTTGTATG+TGG 0.472447 4_1:+43764537 None:intergenic
TGGAGGACAATGAGAAATCC+TGG 0.485709 4_1:+43759972 None:intergenic
TCGACTATGGTATGCTCCAA+TGG 0.488995 4_1:-43760754 Msa0549010:CDS
TAAAGGTTCGCAGCGTATCC+CGG 0.489709 4_1:+43759911 None:intergenic
ACTGTATTGCTTTGGTCTTG+TGG 0.490949 4_1:-43759575 Msa0549010:three_prime_UTR
ACCGGTTTGAAGCATGTCTC+CGG 0.492866 4_1:+43764364 None:intergenic
AAAGAGAAAGTGAGAGTGAG+AGG 0.496030 4_1:+43764563 None:intergenic
TCACTGATATTGATATCAGT+TGG 0.502078 4_1:+43760052 None:intergenic
AGAAAGTGAGAGTGAGAGGG+TGG 0.510273 4_1:+43764567 None:intergenic
AGCTGCTTTGTGATGATGAT+CGG 0.510565 4_1:+43764471 None:intergenic
ACCGGAGACATGCTTCAAAC+CGG 0.510805 4_1:-43764365 Msa0549010:CDS
CGACTATGGTATGCTCCAAT+GGG 0.510854 4_1:-43760753 Msa0549010:CDS
TCAAAGAGTCCTTCCATGGA+TGG 0.516208 4_1:-43760326 Msa0549010:CDS
CGCTGCGAACCTTTATATTG+TGG 0.520932 4_1:-43759903 Msa0549010:three_prime_UTR
ATTGAGAACTCTCCTCCCAT+TGG 0.522546 4_1:+43760738 None:intergenic
CAAATCAAAGAGTCCTTCCA+TGG 0.522589 4_1:-43760330 Msa0549010:CDS
GTATTTGGTTCTCGTTAGGA+CGG 0.522960 4_1:+43760101 None:intergenic
CTTTGTAGCATTCTATGGAT+AGG 0.525828 4_1:+43764411 None:intergenic
CTCATTGTCCTCCACCAACT+GGG 0.526561 4_1:-43759963 Msa0549010:CDS
TCAAAATCCGACGAATGGAC+CGG 0.527320 4_1:-43764383 Msa0549010:CDS
AATTGAACTTGAGGTGGTAA+TGG 0.528123 4_1:+43760130 None:intergenic
ATTTGCAATGTTGCATAAGT+CGG 0.529271 4_1:+43760836 None:intergenic
CATGTCTCCGGTCCATTCGT+CGG 0.532195 4_1:+43764376 None:intergenic
CAATGGAGTTTATTGATCCA+AGG 0.532642 4_1:+43759771 None:intergenic
ACTTATTCATACCCAGTTGG+TGG 0.536948 4_1:+43759952 None:intergenic
GATGAGTTTGCTGAGTTACA+AGG 0.538121 4_1:-43764185 Msa0549010:CDS
TGCCATTAGTCGTACAGAAG+AGG 0.540601 4_1:-43760676 Msa0549010:intron
CTTAGTCCTGAACGTGTGGC+CGG 0.540695 4_1:+43760409 None:intergenic
AGCTTGTTCAGACATAGAAA+AGG 0.546325 4_1:-43759506 Msa0549010:three_prime_UTR
GGTGAGTTTACTTTGTATGT+GGG 0.552274 4_1:+43764538 None:intergenic
GTCGTAACAACGAATTGCTC+CGG 0.553749 4_1:+43760294 None:intergenic
AAACTCTTCAACTATGTCAC+CGG 0.553772 4_1:+43764346 None:intergenic
CATCTTGAGAGAGGTGCCGT+TGG 0.566899 4_1:-43760013 Msa0549010:CDS
GATTATCACGGAGTAGACAT+TGG 0.567606 4_1:-43760792 Msa0549010:CDS
ATAGTTGAAGAGTTTCGAGT+TGG 0.572073 4_1:-43764338 Msa0549010:CDS
CCGGTTGATGAAACCATCCA+TGG 0.572978 4_1:+43760313 None:intergenic
GTCACGAGAGGGTGAGTCTG+AGG 0.578216 4_1:+43764442 None:intergenic
AAGAGAAAGTGAGAGTGAGA+GGG 0.579942 4_1:+43764564 None:intergenic
AATAGAGATAAAACTTAGAG+AGG 0.581818 4_1:-43760718 Msa0549010:CDS
TATTCATACCCAGTTGGTGG+AGG 0.582970 4_1:+43759955 None:intergenic
CTTCCTTTGGGACCGAACAA+TGG 0.586807 4_1:-43760206 Msa0549010:CDS
TGGCAACACAGAGGGAGACA+AGG 0.590701 4_1:+43760150 None:intergenic
TATTTCATTTAATTTAACAA+TGG 0.591665 4_1:+43759754 None:intergenic
GCAGCTCAAAATCCGACGAA+TGG 0.595906 4_1:-43764388 Msa0549010:CDS
TATGGTTTCGAAGATTATCA+CGG 0.596693 4_1:-43760804 Msa0549010:CDS
TCTTGAGAGAGGTGCCGTTG+GGG 0.603270 4_1:-43760011 Msa0549010:CDS
GGTCCCAAAGGAAGACATGT+AGG 0.606339 4_1:+43760215 None:intergenic
CATACTTATTCATACCCAGT+TGG 0.606484 4_1:+43759949 None:intergenic
GGCAACACAGAGGGAGACAA+GGG 0.608189 4_1:+43760151 None:intergenic
TAGCCATTGTTCGGTCCCAA+AGG 0.609219 4_1:+43760203 None:intergenic
TTGTGATGATGATCGGTCCA+TGG 0.611510 4_1:+43764478 None:intergenic
TTGATGAAACCATCCATGGA+AGG 0.617269 4_1:+43760317 None:intergenic
CAGCCGACGCATCTTGAGAG+AGG 0.619905 4_1:-43760022 Msa0549010:CDS
GCTGAGTGCTTTCAACTCCA+AGG 0.619906 4_1:-43764071 Msa0549010:intron
TCATGCACAAGCTATCACCT+TGG 0.622291 4_1:-43759788 Msa0549010:three_prime_UTR
GGTGGTAATGGCAACACAGA+GGG 0.625903 4_1:+43760142 None:intergenic
ATACAGCCATTATCATGTGA+AGG 0.629607 4_1:-43760082 Msa0549010:CDS
AGAGAGGAAGATACAAAGCT+CGG 0.630539 4_1:-43760702 Msa0549010:CDS
CGGTGTGCCAATTGAACTTG+AGG 0.632200 4_1:+43760121 None:intergenic
CTATCCATAGAATGCTACAA+AGG 0.635986 4_1:-43764410 Msa0549010:CDS
CTATGGTATGCTCCAATGGG+AGG 0.639482 4_1:-43760750 Msa0549010:CDS
TGTGGTAAAATAGGAAAATG+CGG 0.639936 4_1:-43759885 Msa0549010:three_prime_UTR
ATTGCTTAGTCCTGAACGTG+TGG 0.649167 4_1:+43760405 None:intergenic
CACAAGCCAAAACATGACCA+TGG 0.653840 4_1:-43764495 Msa0549010:exon
GCACCTCTCTCAAGATGCGT+CGG 0.658569 4_1:+43760019 None:intergenic
AGGACTTTGAAGTCACGAGA+GGG 0.672645 4_1:+43764431 None:intergenic
ATATCATGTATGTACAAACA+AGG 0.687023 4_1:+43759598 None:intergenic
TAGGACTTTGAAGTCACGAG+AGG 0.690395 4_1:+43764430 None:intergenic
TCATCATCAGTAATTGACGA+AGG 0.696045 4_1:-43760445 Msa0549010:CDS
TCTGAATGAGACATCCCCAA+CGG 0.719239 4_1:+43759997 None:intergenic
TGTGCCAATTGAACTTGAGG+TGG 0.723647 4_1:+43760124 None:intergenic
ATACTTGTAAGAGTACGTAG+AGG 0.736627 4_1:-43764212 Msa0549010:CDS
AGGTGGTAATGGCAACACAG+AGG 0.738008 4_1:+43760141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTAATTTTTTTTTTA+TGG - chr4_1:43760496-43760515 Msa0549010:intron 0.0%
!! TAGATAATTAATTCAATTTA+GGG + chr4_1:43760642-43760661 None:intergenic 10.0%
!!! TATTTCATTTAATTTAACAA+TGG + chr4_1:43764229-43764248 None:intergenic 10.0%
!!! TTTTAGTAGTTTTTTAAACA+TGG - chr4_1:43759975-43759994 Msa0549010:CDS 15.0%
!! CAGTGAATTTAATAAAATTA+TGG - chr4_1:43760043-43760062 Msa0549010:CDS 15.0%
!! TTAAATCACATTAAAAATGA+TGG - chr4_1:43760578-43760597 Msa0549010:intron 15.0%
!! GTAGATAATTAATTCAATTT+AGG + chr4_1:43760643-43760662 None:intergenic 15.0%
!!! TAAGCAAAAATTAACTTTTT+AGG - chr4_1:43760769-43760788 Msa0549010:CDS 15.0%
!! AATTAAACAAATGAATGTAT+TGG - chr4_1:43760939-43760958 Msa0549010:intron 15.0%
!! ATATTTATTATTCTAGACTT+GGG + chr4_1:43762045-43762064 None:intergenic 15.0%
!! TTTATAATATCTTCATCTAA+TGG - chr4_1:43762630-43762649 Msa0549010:intron 15.0%
!!! GTTCTATTTTCTTAAATTAT+CGG + chr4_1:43763405-43763424 None:intergenic 15.0%
!!! ACTATTAATCAGATTTTATT+TGG + chr4_1:43764122-43764141 None:intergenic 15.0%
!! TTTCTTAAGAAATGTGAAAA+AGG + chr4_1:43760212-43760231 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG + chr4_1:43760288-43760307 None:intergenic 20.0%
!! ACAAGATAGTAGTATTAATT+AGG - chr4_1:43760329-43760348 Msa0549010:CDS 20.0%
!! CAAGATAGTAGTATTAATTA+GGG - chr4_1:43760330-43760349 Msa0549010:CDS 20.0%
!! AAGATAGTAGTATTAATTAG+GGG - chr4_1:43760331-43760350 Msa0549010:CDS 20.0%
!! ATGCATATAGTAATTTGAAA+AGG - chr4_1:43760378-43760397 Msa0549010:CDS 20.0%
!! TGCATATAGTAATTTGAAAA+GGG - chr4_1:43760379-43760398 Msa0549010:CDS 20.0%
!! GGACAAAAATAAAATCAAAT+GGG - chr4_1:43760414-43760433 Msa0549010:CDS 20.0%
!! TCATTAGTGTAGATTAAATT+TGG - chr4_1:43760690-43760709 Msa0549010:CDS 20.0%
!!! TTCATTTGTTTAATTTAACC+TGG + chr4_1:43760934-43760953 None:intergenic 20.0%
!!! GTTTTCTCCTTTTATTATTA+GGG - chr4_1:43761373-43761392 Msa0549010:intron 20.0%
!!! ATTTTGTCCCTAATAATAAA+AGG + chr4_1:43761383-43761402 None:intergenic 20.0%
!!! CAATAGATTTGTTGAAATTA+CGG - chr4_1:43761430-43761449 Msa0549010:intron 20.0%
!! GATATTTATTATTCTAGACT+TGG + chr4_1:43762046-43762065 None:intergenic 20.0%
!! CTCAAATAAATATGGTTAAA+TGG + chr4_1:43762068-43762087 None:intergenic 20.0%
!! GTTATTGTCTCAAATAAATA+TGG + chr4_1:43762076-43762095 None:intergenic 20.0%
!! TAGATAAGTAATTAAAGAGA+AGG - chr4_1:43762210-43762229 Msa0549010:intron 20.0%
!! TTGTGATTCTTAATACTTTA+TGG - chr4_1:43762253-43762272 Msa0549010:intron 20.0%
!! TGTGATTCTTAATACTTTAT+GGG - chr4_1:43762254-43762273 Msa0549010:intron 20.0%
!! AATACATTATACCAGTATAT+AGG + chr4_1:43762522-43762541 None:intergenic 20.0%
!!! TAATAATTTTGTGATCAACA+GGG - chr4_1:43763499-43763518 Msa0549010:intron 20.0%
!! AGTATATAACATCATTTAAC+AGG - chr4_1:43764139-43764158 Msa0549010:CDS 20.0%
!!! AGTTATTCAACTTTTGAAAA+TGG - chr4_1:43764558-43764577 Msa0549010:five_prime_UTR 20.0%
! TAACTCTTCTTATTCTCATT+AGG + chr4_1:43759831-43759850 None:intergenic 25.0%
! TTGATCCTAATTATCTTGTT+GGG - chr4_1:43759868-43759887 Msa0549010:three_prime_UTR 25.0%
! AAAAACCCAACAAGATAATT+AGG + chr4_1:43759876-43759895 None:intergenic 25.0%
!! TAATTATCTTGTTGGGTTTT+TGG - chr4_1:43759875-43759894 Msa0549010:three_prime_UTR 25.0%
! AGTTAGAATTCGTGTATATT+TGG - chr4_1:43760015-43760034 Msa0549010:CDS 25.0%
! TTAGGTTCAACTTAGATTAA+TGG + chr4_1:43760119-43760138 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr4_1:43760341-43760360 Msa0549010:CDS 25.0%
! GCATATAGTAATTTGAAAAG+GGG - chr4_1:43760380-43760399 Msa0549010:CDS 25.0%
! GGGACAAAAATAAAATCAAA+TGG - chr4_1:43760413-43760432 Msa0549010:CDS 25.0%
! CATTCAATAAATGATGTATG+TGG - chr4_1:43760794-43760813 Msa0549010:CDS 25.0%
! TCATTCATAAATGATGTATG+TGG + chr4_1:43760832-43760851 None:intergenic 25.0%
!!! TAAGCAAAAGTTCACTTTTT+AGG + chr4_1:43760856-43760875 None:intergenic 25.0%
!! AACACCATTACCTTAATTTT+TGG - chr4_1:43761277-43761296 Msa0549010:intron 25.0%
! TTAATCTCATACAAATGTGA+GGG - chr4_1:43761346-43761365 Msa0549010:intron 25.0%
!! CGTTTTCTCCTTTTATTATT+AGG - chr4_1:43761372-43761391 Msa0549010:intron 25.0%
! TATTAGGGACAAAATTAATC+TGG - chr4_1:43761388-43761407 Msa0549010:intron 25.0%
! TACAAATATGTCTCATATCA+AGG - chr4_1:43761469-43761488 Msa0549010:intron 25.0%
!!! TTTTTTACATACACATAAGC+CGG + chr4_1:43761708-43761727 None:intergenic 25.0%
! TGTAAAAAAATCCAGTTGAA+AGG - chr4_1:43761719-43761738 Msa0549010:intron 25.0%
!! TTAATTTGAAGTGTTTGTGT+TGG + chr4_1:43761904-43761923 None:intergenic 25.0%
! ACTATACTGTATTCAATCAA+GGG + chr4_1:43762498-43762517 None:intergenic 25.0%
! TACTGGTATAATGTATTTGA+AGG - chr4_1:43762525-43762544 Msa0549010:intron 25.0%
! GAATGTTCATAAAGACAATA+GGG + chr4_1:43762921-43762940 None:intergenic 25.0%
! TGAATGTTCATAAAGACAAT+AGG + chr4_1:43762922-43762941 None:intergenic 25.0%
! ATGATATACCTTTGTAAGTA+AGG + chr4_1:43762953-43762972 None:intergenic 25.0%
! ATACAATTGTAAAATGGTCA+GGG + chr4_1:43762981-43763000 None:intergenic 25.0%
! AATCGGATACAATTGTAAAA+TGG + chr4_1:43762987-43763006 None:intergenic 25.0%
!! GACAAACAACAAATTTTATG+AGG + chr4_1:43763063-43763082 None:intergenic 25.0%
! AATAGAGATAAAACTTAGAG+AGG - chr4_1:43763262-43763281 Msa0549010:intron 25.0%
!! CTAATAATTTTGTGATCAAC+AGG - chr4_1:43763498-43763517 Msa0549010:intron 25.0%
!! CCTATTTTACCACAATATAA+AGG + chr4_1:43764089-43764108 None:intergenic 25.0%
! CCTTTATATTGTGGTAAAAT+AGG - chr4_1:43764086-43764105 Msa0549010:CDS 25.0%
! ATTAATATGCACAAGTGAAA+TGG + chr4_1:43764310-43764329 None:intergenic 25.0%
! TTGGTATGTTACATGTTAAA+TGG + chr4_1:43764338-43764357 None:intergenic 25.0%
! AAAAAGAACATGGATGATAT+TGG + chr4_1:43764357-43764376 None:intergenic 25.0%
! ATATCATGTATGTACAAACA+AGG + chr4_1:43764385-43764404 None:intergenic 25.0%
!!! TTGTGGCTTTTAATTTGTTA+GGG - chr4_1:43764422-43764441 Msa0549010:CDS 25.0%
!!! ATTCAACTTTTGAAAATGGT+TGG - chr4_1:43764562-43764581 Msa0549010:five_prime_UTR 25.0%
GTTGATCCTAATTATCTTGT+TGG - chr4_1:43759867-43759886 Msa0549010:three_prime_UTR 30.0%
ATTAAGAAGTAACAGTACCT+TGG + chr4_1:43759929-43759948 None:intergenic 30.0%
! TTATGGTTACATCGTGATTT+TGG - chr4_1:43760060-43760079 Msa0549010:CDS 30.0%
TCAACTTGGAGATAACAATT+AGG + chr4_1:43760137-43760156 None:intergenic 30.0%
ATTAGGAGAACAAATCAACT+TGG + chr4_1:43760151-43760170 None:intergenic 30.0%
GCAATAGGTGACTAAATTAA+GGG + chr4_1:43760190-43760209 None:intergenic 30.0%
AGAAATGTGAAAAAGGCAAT+AGG + chr4_1:43760205-43760224 None:intergenic 30.0%
TTGAAAAGGGGTTTACATTT+AGG - chr4_1:43760392-43760411 Msa0549010:CDS 30.0%
TGAAAAGGGGTTTACATTTA+GGG - chr4_1:43760393-43760412 Msa0549010:CDS 30.0%
TCAAATGGGTACTTAGATAT+AGG - chr4_1:43760428-43760447 Msa0549010:CDS 30.0%
CAAATGGGTACTTAGATATA+GGG - chr4_1:43760429-43760448 Msa0549010:CDS 30.0%
! TCAATTTAGGGTTAAAGTTG+TGG + chr4_1:43760630-43760649 None:intergenic 30.0%
ATAAATAATCTTACTCCCTC+TGG - chr4_1:43760737-43760756 Msa0549010:CDS 30.0%
TGATGTATGTGGTCTATATA+TGG + chr4_1:43760821-43760840 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+CGG - chr4_1:43760866-43760885 Msa0549010:intron 30.0%
AGCAACAAAGTCACATATTA+TGG + chr4_1:43760987-43761006 None:intergenic 30.0%
ATATGTGACTTTGTTGCTAT+TGG - chr4_1:43760989-43761008 Msa0549010:intron 30.0%
GTAGTTACTTCTTAGTTACA+CGG - chr4_1:43761034-43761053 Msa0549010:intron 30.0%
CTTACAGCTACTAACAAATA+CGG - chr4_1:43761159-43761178 Msa0549010:intron 30.0%
!!! TTAAGGTAATGGTGTTGTTT+TGG + chr4_1:43761273-43761292 None:intergenic 30.0%
CCTACCAAAAATTAAGGTAA+TGG + chr4_1:43761284-43761303 None:intergenic 30.0%
!!! CCATTACCTTAATTTTTGGT+AGG - chr4_1:43761281-43761300 Msa0549010:intron 30.0%
AAGCTACCTACCAAAAATTA+AGG + chr4_1:43761290-43761309 None:intergenic 30.0%
CTTAATCTCATACAAATGTG+AGG - chr4_1:43761345-43761364 Msa0549010:intron 30.0%
TCATATCAAGGTGAATTTGT+CGG - chr4_1:43761481-43761500 Msa0549010:intron 30.0%
TAACTGTGACTAATCTTCTT+CGG + chr4_1:43761777-43761796 None:intergenic 30.0%
!!! TTGGTGCTTATTTTGAGTAA+CGG + chr4_1:43761866-43761885 None:intergenic 30.0%
! TTGTGTTGGATTTTCCAAAA+AGG + chr4_1:43761890-43761909 None:intergenic 30.0%
! AACTTTTAGTATTGTGTCTG+AGG - chr4_1:43761951-43761970 Msa0549010:intron 30.0%
TATTATTCTAGACTTGGGTT+AGG + chr4_1:43762040-43762059 None:intergenic 30.0%
ATGTCTATATCAGACACAAA+AGG + chr4_1:43762164-43762183 None:intergenic 30.0%
TCTAAAGATGTGAAAAATGC+TGG + chr4_1:43762194-43762213 None:intergenic 30.0%
TAAAGAGAAGGAAAGTAAAG+AGG - chr4_1:43762222-43762241 Msa0549010:intron 30.0%
ATCAATGTAATCATATGTGC+CGG - chr4_1:43762407-43762426 Msa0549010:intron 30.0%
CACTATACTGTATTCAATCA+AGG + chr4_1:43762499-43762518 None:intergenic 30.0%
GAAAGAAAGTTGCTAGAATT+TGG + chr4_1:43762787-43762806 None:intergenic 30.0%
GATACAATTGTAAAATGGTC+AGG + chr4_1:43762982-43763001 None:intergenic 30.0%
GTTTGACCTTAAAATCGTAA+GGG + chr4_1:43763021-43763040 None:intergenic 30.0%
AGTTTGACCTTAAAATCGTA+AGG + chr4_1:43763022-43763041 None:intergenic 30.0%
ATTTGCAATGTTGCATAAGT+CGG + chr4_1:43763147-43763166 None:intergenic 30.0%
ATTGCAAATGCAAGTCTTTA+TGG - chr4_1:43763158-43763177 Msa0549010:intron 30.0%
TATGGTTTCGAAGATTATCA+CGG - chr4_1:43763176-43763195 Msa0549010:intron 30.0%
TCAATGTTTCATAGCATGTA+CGG + chr4_1:43763352-43763371 None:intergenic 30.0%
AACAGAAACTTCAAGGTTAT+TGG - chr4_1:43763612-43763631 Msa0549010:intron 30.0%
TTAGATCCTTCACATGATAA+TGG + chr4_1:43763907-43763926 None:intergenic 30.0%
TCACTGATATTGATATCAGT+TGG + chr4_1:43763931-43763950 None:intergenic 30.0%
TGTGGTAAAATAGGAAAATG+CGG - chr4_1:43764095-43764114 Msa0549010:CDS 30.0%
CATGATATACTGTATTGCTT+TGG - chr4_1:43764397-43764416 Msa0549010:CDS 30.0%
!!! CTTGTGGCTTTTAATTTGTT+AGG - chr4_1:43764421-43764440 Msa0549010:CDS 30.0%
!!! AATTGCTTTTTGTGCTTAGT+AGG - chr4_1:43764513-43764532 Msa0549010:five_prime_UTR 30.0%
GGTGAGTTTACTTTGTATGT+GGG + chr4_1:43759445-43759464 None:intergenic 35.0%
AGGTGAGTTTACTTTGTATG+TGG + chr4_1:43759446-43759465 None:intergenic 35.0%
!! GAAGGTTTGGATTTTGTTTG+AGG + chr4_1:43759466-43759485 None:intergenic 35.0%
CTTTGTAGCATTCTATGGAT+AGG + chr4_1:43759572-43759591 None:intergenic 35.0%
CTATCCATAGAATGCTACAA+AGG - chr4_1:43759570-43759589 Msa0549010:three_prime_UTR 35.0%
AAACTCTTCAACTATGTCAC+CGG + chr4_1:43759637-43759656 None:intergenic 35.0%
! ATAGTTGAAGAGTTTCGAGT+TGG - chr4_1:43759642-43759661 Msa0549010:three_prime_UTR 35.0%
GTTCAGCTAACTCATTGATA+AGG - chr4_1:43759667-43759686 Msa0549010:three_prime_UTR 35.0%
! TTCAAAGCACCTTTCAAGAA+TGG - chr4_1:43759690-43759709 Msa0549010:three_prime_UTR 35.0%
!!! CCACTTTTTCCATTCTTGAA+AGG + chr4_1:43759702-43759721 None:intergenic 35.0%
CCTTTCAAGAATGGAAAAAG+TGG - chr4_1:43759699-43759718 Msa0549010:three_prime_UTR 35.0%
! ATACTTGTAAGAGTACGTAG+AGG - chr4_1:43759768-43759787 Msa0549010:three_prime_UTR 35.0%
TAGGTGACTAAATTAAGGGA+CGG + chr4_1:43760186-43760205 None:intergenic 35.0%
GGCAATAGGTGACTAAATTA+AGG + chr4_1:43760191-43760210 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr4_1:43760755-43760774 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr4_1:43760756-43760775 None:intergenic 35.0%
ATCATATAAGATACTCCCTC+CGG + chr4_1:43760888-43760907 None:intergenic 35.0%
! TATTTGATGTGTCGATATCC+AGG - chr4_1:43760913-43760932 Msa0549010:intron 35.0%
TTACTTCTTAGTTACACGGT+TGG - chr4_1:43761038-43761057 Msa0549010:intron 35.0%
! CGTATTTGTTAGTAGCTGTA+AGG + chr4_1:43761161-43761180 None:intergenic 35.0%
!!! ATGGTGTTGTTTTGGCAAAT+GGG + chr4_1:43761265-43761284 None:intergenic 35.0%
!!! AATGGTGTTGTTTTGGCAAA+TGG + chr4_1:43761266-43761285 None:intergenic 35.0%
!!! TTTTTGGTAGGTAGCTTGTT+TGG - chr4_1:43761293-43761312 Msa0549010:intron 35.0%
! AGTGCTACTATCATACTATG+TGG + chr4_1:43761319-43761338 None:intergenic 35.0%
! ATCTTTTGCTAGATCACAAG+TGG + chr4_1:43761515-43761534 None:intergenic 35.0%
AACTGTGACTAATCTTCTTC+GGG + chr4_1:43761776-43761795 None:intergenic 35.0%
!!! TTTTCGGGTTACTACGATAT+AGG + chr4_1:43761821-43761840 None:intergenic 35.0%
ATATCGTAGTAACCCGAAAA+CGG - chr4_1:43761821-43761840 Msa0549010:intron 35.0%
!! TATTTTGAGTAACGGTAGGT+TGG + chr4_1:43761858-43761877 None:intergenic 35.0%
!!! TGCTTATTTTGAGTAACGGT+AGG + chr4_1:43761862-43761881 None:intergenic 35.0%
! AAATAAGCACCAAGCCTTTT+TGG - chr4_1:43761873-43761892 Msa0549010:intron 35.0%
! TTGGATTTTCCAAAAAGGCT+TGG + chr4_1:43761885-43761904 None:intergenic 35.0%
!! CATTAGCCTTGATCTATACA+TGG - chr4_1:43762321-43762340 Msa0549010:intron 35.0%
ACAGTATAGTGCCTATATAC+TGG - chr4_1:43762508-43762527 Msa0549010:intron 35.0%
TTTGTTGAGCAATGCAGTTA+CGG - chr4_1:43762593-43762612 Msa0549010:intron 35.0%
! AACTGTACTTTTCAGCTTCA+AGG - chr4_1:43762665-43762684 Msa0549010:intron 35.0%
ACAAAAACCCGAATACAAGA+CGG - chr4_1:43762712-43762731 Msa0549010:intron 35.0%
ACACAAATCCGTCTTGTATT+CGG + chr4_1:43762723-43762742 None:intergenic 35.0%
!! AGCTTTGGGAAGAAGTAATA+TGG + chr4_1:43762809-43762828 None:intergenic 35.0%
TACCTTTGTAAGTAAGGACT+CGG + chr4_1:43762947-43762966 None:intergenic 35.0%
TAAGGGACAGAGTTCAAAAT+CGG + chr4_1:43763004-43763023 None:intergenic 35.0%
!!! AAGGTCAAACTTTTGCTGTT+AGG - chr4_1:43763031-43763050 Msa0549010:intron 35.0%
TTGTATCTGTGACAGATATC+TGG - chr4_1:43763083-43763102 Msa0549010:intron 35.0%
TTGTTAGAGCAATTCGACTA+TGG - chr4_1:43763213-43763232 Msa0549010:intron 35.0%
ATGTACGGAAAATTCAGAGT+GGG + chr4_1:43763337-43763356 None:intergenic 35.0%
TCATCATCAGTAATTGACGA+AGG - chr4_1:43763535-43763554 Msa0549010:intron 35.0%
CGAAGGTAAAGAAAGTTTAC+CGG - chr4_1:43763552-43763571 Msa0549010:intron 35.0%
AACTAGCAACAGAAACTTCA+AGG - chr4_1:43763605-43763624 Msa0549010:intron 35.0%
! CAAGGTTATTGGTAGTTTCA+AGG - chr4_1:43763623-43763642 Msa0549010:intron 35.0%
! AACTTTAGTGTGTCGATGTA+AGG + chr4_1:43763737-43763756 None:intergenic 35.0%
AATTGAACTTGAGGTGGTAA+TGG + chr4_1:43763853-43763872 None:intergenic 35.0%
ATTACCACCTCAAGTTCAAT+TGG - chr4_1:43763852-43763871 Msa0549010:intron 35.0%
!! CACATGATAATGGCTGTATT+TGG + chr4_1:43763897-43763916 None:intergenic 35.0%
ATACAGCCATTATCATGTGA+AGG - chr4_1:43763898-43763917 Msa0549010:intron 35.0%
CATACTTATTCATACCCAGT+TGG + chr4_1:43764034-43764053 None:intergenic 35.0%
CAACTGGGTATGAATAAGTA+TGG - chr4_1:43764032-43764051 Msa0549010:intron 35.0%
!!! TATGGTTTTAAACTGCAGTC+CGG - chr4_1:43764050-43764069 Msa0549010:intron 35.0%
CAATGGAGTTTATTGATCCA+AGG + chr4_1:43764212-43764231 None:intergenic 35.0%
!!! ACAACTGTCGTTTTCATCAT+TGG + chr4_1:43764274-43764293 None:intergenic 35.0%
CAAGGTGAACAAAAAGAACA+TGG + chr4_1:43764367-43764386 None:intergenic 35.0%
! AGCTTGTTCAGACATAGAAA+AGG - chr4_1:43764474-43764493 Msa0549010:CDS 35.0%
! TTTTTGTGCTTAGTAGGTAG+TGG - chr4_1:43764519-43764538 Msa0549010:five_prime_UTR 35.0%
AAGAGAAAGTGAGAGTGAGA+GGG + chr4_1:43759419-43759438 None:intergenic 40.0%
AAAGAGAAAGTGAGAGTGAG+AGG + chr4_1:43759420-43759439 None:intergenic 40.0%
!!! TGTTTTGGCTTGTGAAGGTT+TGG + chr4_1:43759479-43759498 None:intergenic 40.0%
! AGCTGCTTTGTGATGATGAT+CGG + chr4_1:43759512-43759531 None:intergenic 40.0%
!! GATGAGTTTGCTGAGTTACA+AGG - chr4_1:43759795-43759814 Msa0549010:three_prime_UTR 40.0%
GACGGAGGGAGTAAAAAATT+AGG + chr4_1:43760168-43760187 None:intergenic 40.0%
TGACTAAATTAAGGGACGGA+GGG + chr4_1:43760182-43760201 None:intergenic 40.0%
TGGGTACTTAGATATAGGGA+CGG - chr4_1:43760433-43760452 Msa0549010:CDS 40.0%
TACTTAGATATAGGGACGGA+GGG - chr4_1:43760437-43760456 Msa0549010:CDS 40.0%
!!! TTTTTTGCACGAAGACTTCG+TGG + chr4_1:43760526-43760545 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4_1:43760869-43760888 Msa0549010:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4_1:43760870-43760889 Msa0549010:intron 40.0%
! GTGACTTTGTTGCTATTGGT+TGG - chr4_1:43760993-43761012 Msa0549010:intron 40.0%
! CGACAGGTAATAAAAGCACA+CGG - chr4_1:43761188-43761207 Msa0549010:intron 40.0%
!!! TGGTGTTGTTTTGGCAAATG+GGG + chr4_1:43761264-43761283 None:intergenic 40.0%
AGGTGAATTTGTCGGAACTA+TGG - chr4_1:43761489-43761508 Msa0549010:intron 40.0%
CGTTGCTACCAACAATAGAT+TGG - chr4_1:43761629-43761648 Msa0549010:intron 40.0%
CACTTGGACCAATCTATTGT+TGG + chr4_1:43761640-43761659 None:intergenic 40.0%
! CAACAATAGATTGGTCCAAG+TGG - chr4_1:43761638-43761657 Msa0549010:intron 40.0%
GTCTCAAGTCATTTACCACT+TGG + chr4_1:43761656-43761675 None:intergenic 40.0%
ACATCCAACCACATGCTTAA+GGG + chr4_1:43761678-43761697 None:intergenic 40.0%
AACATCCAACCACATGCTTA+AGG + chr4_1:43761679-43761698 None:intergenic 40.0%
GTGAATTCTCTCCTTTCAAC+TGG + chr4_1:43761733-43761752 None:intergenic 40.0%
ACTGTGACTAATCTTCTTCG+GGG + chr4_1:43761775-43761794 None:intergenic 40.0%
TAGTCACAGTTAAGCAGCAA+TGG - chr4_1:43761785-43761804 Msa0549010:intron 40.0%
ATGAGTAACACGCAACTTGA+TGG + chr4_1:43762136-43762155 None:intergenic 40.0%
CCTTGATCTATACATGGACA+CGG - chr4_1:43762327-43762346 Msa0549010:intron 40.0%
CTTGATCTATACATGGACAC+GGG - chr4_1:43762328-43762347 Msa0549010:intron 40.0%
ATACGTATCATACCTGAGAC+CGG + chr4_1:43762429-43762448 None:intergenic 40.0%
TATGAAGCACATGTTCTCCT+CGG + chr4_1:43762474-43762493 None:intergenic 40.0%
CACAAATCCGTCTTGTATTC+GGG + chr4_1:43762722-43762741 None:intergenic 40.0%
! GCAACTCTATCTGAAGCTTT+GGG + chr4_1:43762823-43762842 None:intergenic 40.0%
! AGCAACTCTATCTGAAGCTT+TGG + chr4_1:43762824-43762843 None:intergenic 40.0%
TTAATGCAGCTCAAGCTTCA+GGG - chr4_1:43762893-43762912 Msa0549010:intron 40.0%
AACCGAGTCCTTACTTACAA+AGG - chr4_1:43762942-43762961 Msa0549010:intron 40.0%
! CTCTGTCCCTTACGATTTTA+AGG - chr4_1:43763012-43763031 Msa0549010:intron 40.0%
GATTATCACGGAGTAGACAT+TGG - chr4_1:43763188-43763207 Msa0549010:intron 40.0%
AGAGAGGAAGATACAAAGCT+CGG - chr4_1:43763278-43763297 Msa0549010:intron 40.0%
AACCTCTTCTGTACGACTAA+TGG + chr4_1:43763309-43763328 None:intergenic 40.0%
CATGTACGGAAAATTCAGAG+TGG + chr4_1:43763338-43763357 None:intergenic 40.0%
TTCGACACTTCAAACTCGAT+CGG + chr4_1:43763427-43763446 None:intergenic 40.0%
CAAATCAAAGAGTCCTTCCA+TGG - chr4_1:43763650-43763669 Msa0549010:intron 40.0%
TTGATGAAACCATCCATGGA+AGG + chr4_1:43763666-43763685 None:intergenic 40.0%
AGGAAGACATGTAGGAGAAT+AGG + chr4_1:43763760-43763779 None:intergenic 40.0%
TTCTCCTACATGTCTTCCTT+TGG - chr4_1:43763761-43763780 Msa0549010:intron 40.0%
TCTCCTACATGTCTTCCTTT+GGG - chr4_1:43763762-43763781 Msa0549010:intron 40.0%
CACTTGAAGTAGCCATTGTT+CGG + chr4_1:43763789-43763808 None:intergenic 40.0%
!! GTATTTGGTTCTCGTTAGGA+CGG + chr4_1:43763882-43763901 None:intergenic 40.0%
ACTTATTCATACCCAGTTGG+TGG + chr4_1:43764031-43764050 None:intergenic 40.0%
!!! ATGGTTTTAAACTGCAGTCC+GGG - chr4_1:43764051-43764070 Msa0549010:intron 40.0%
!! ACTGTATTGCTTTGGTCTTG+TGG - chr4_1:43764405-43764424 Msa0549010:CDS 40.0%
!!! GGTCATGTTTTGGCTTGTGA+AGG + chr4_1:43759484-43759503 None:intergenic 45.0%
CACAAGCCAAAACATGACCA+TGG - chr4_1:43759485-43759504 Msa0549010:three_prime_UTR 45.0%
! ATCGGTCCATGGTCATGTTT+TGG + chr4_1:43759494-43759513 None:intergenic 45.0%
! TTGTGATGATGATCGGTCCA+TGG + chr4_1:43759505-43759524 None:intergenic 45.0%
!! AGGACTTTGAAGTCACGAGA+GGG + chr4_1:43759552-43759571 None:intergenic 45.0%
!! TAGGACTTTGAAGTCACGAG+AGG + chr4_1:43759553-43759572 None:intergenic 45.0%
GCTGCCTTTGTAGCATTCTA+TGG + chr4_1:43759577-43759596 None:intergenic 45.0%
TCAAAATCCGACGAATGGAC+CGG - chr4_1:43759597-43759616 Msa0549010:three_prime_UTR 45.0%
!! GTTGAAGAGTTTCGAGTTGG+TGG - chr4_1:43759645-43759664 Msa0549010:three_prime_UTR 45.0%
GTGACTAAATTAAGGGACGG+AGG + chr4_1:43760183-43760202 None:intergenic 45.0%
GTACTTAGATATAGGGACGG+AGG - chr4_1:43760436-43760455 Msa0549010:CDS 45.0%
!!! GTTACACGGTTGGTCTTTTC+TGG - chr4_1:43761048-43761067 Msa0549010:intron 45.0%
ACTTGAGACCCTTAAGCATG+TGG - chr4_1:43761667-43761686 Msa0549010:intron 45.0%
GTGGTTGGATGTTCGATTTC+CGG - chr4_1:43761686-43761705 Msa0549010:intron 45.0%
ATCTTCTTCGGGGAACATGT+GGG + chr4_1:43761765-43761784 None:intergenic 45.0%
AATCTTCTTCGGGGAACATG+TGG + chr4_1:43761766-43761785 None:intergenic 45.0%
CGGGTTACTACGATATAGGT+AGG + chr4_1:43761817-43761836 None:intergenic 45.0%
! ACCCGAAAACGGTGTGATTT+TGG - chr4_1:43761832-43761851 Msa0549010:intron 45.0%
! GCCAAAATCACACCGTTTTC+GGG + chr4_1:43761836-43761855 None:intergenic 45.0%
! GGCCAAAATCACACCGTTTT+CGG + chr4_1:43761837-43761856 None:intergenic 45.0%
CCGTGTCCATGTATAGATCA+AGG + chr4_1:43762330-43762349 None:intergenic 45.0%
! TAATCATATGTGCCGGTCTC+AGG - chr4_1:43762414-43762433 Msa0549010:intron 45.0%
TTTCAGCTTCAAGGAGCAGT+AGG - chr4_1:43762674-43762693 Msa0549010:intron 45.0%
ACGGATTTGTGTCGTATCCA+TGG - chr4_1:43762731-43762750 Msa0549010:intron 45.0%
CGGATTTGTGTCGTATCCAT+GGG - chr4_1:43762732-43762751 Msa0549010:intron 45.0%
TGCTTCTCGCTACAATGATG+TGG - chr4_1:43762840-43762859 Msa0549010:intron 45.0%
ATTAAGCCATGCGTTTGCTC+GGG + chr4_1:43762878-43762897 None:intergenic 45.0%
CATTAAGCCATGCGTTTGCT+CGG + chr4_1:43762879-43762898 None:intergenic 45.0%
CTTAATGCAGCTCAAGCTTC+AGG - chr4_1:43762892-43762911 Msa0549010:intron 45.0%
TAATGCAGCTCAAGCTTCAG+GGG - chr4_1:43762894-43762913 Msa0549010:intron 45.0%
CTTCTTCCACGGTAAATGCA+GGG - chr4_1:43763114-43763133 Msa0549010:intron 45.0%
TAATGACCCTGCATTTACCG+TGG + chr4_1:43763123-43763142 None:intergenic 45.0%
TCGACTATGGTATGCTCCAA+TGG - chr4_1:43763226-43763245 Msa0549010:intron 45.0%
CGACTATGGTATGCTCCAAT+GGG - chr4_1:43763227-43763246 Msa0549010:intron 45.0%
ATTGAGAACTCTCCTCCCAT+TGG + chr4_1:43763245-43763264 None:intergenic 45.0%
TGCCATTAGTCGTACAGAAG+AGG - chr4_1:43763304-43763323 Msa0549010:intron 45.0%
ATTGCTTAGTCCTGAACGTG+TGG + chr4_1:43763578-43763597 None:intergenic 45.0%
TCAAAGAGTCCTTCCATGGA+TGG - chr4_1:43763654-43763673 Msa0549010:intron 45.0%
CCATGGATGGTTTCATCAAC+CGG - chr4_1:43763667-43763686 Msa0549010:intron 45.0%
GTCGTAACAACGAATTGCTC+CGG + chr4_1:43763689-43763708 None:intergenic 45.0%
GTCGATGTAAGGAGAGTTTC+TGG + chr4_1:43763726-43763745 None:intergenic 45.0%
TGTGCCAATTGAACTTGAGG+TGG + chr4_1:43763859-43763878 None:intergenic 45.0%
!! GGCTGTATTTGGTTCTCGTT+AGG + chr4_1:43763886-43763905 None:intergenic 45.0%
TCTGAATGAGACATCCCCAA+CGG + chr4_1:43763986-43764005 None:intergenic 45.0%
GGATGTCTCATTCAGATTCC+AGG - chr4_1:43763990-43764009 Msa0549010:intron 45.0%
TGGAGGACAATGAGAAATCC+TGG + chr4_1:43764011-43764030 None:intergenic 45.0%
!! TATTCATACCCAGTTGGTGG+AGG + chr4_1:43764028-43764047 None:intergenic 45.0%
CGCTGCGAACCTTTATATTG+TGG - chr4_1:43764077-43764096 Msa0549010:CDS 45.0%
TCATGCACAAGCTATCACCT+TGG - chr4_1:43764192-43764211 Msa0549010:CDS 45.0%
!!! AATTTTTATTTAATTTTTCT+TGG - chr4_1:43761126-43761145 Msa0549010:intron 5.0%
AGAAAGTGAGAGTGAGAGGG+TGG + chr4_1:43759416-43759435 None:intergenic 50.0%
GCAGCTCAAAATCCGACGAA+TGG - chr4_1:43759592-43759611 Msa0549010:three_prime_UTR 50.0%
ACCGGAGACATGCTTCAAAC+CGG - chr4_1:43759615-43759634 Msa0549010:three_prime_UTR 50.0%
!! ACCGGTTTGAAGCATGTCTC+CGG + chr4_1:43759619-43759638 None:intergenic 50.0%
GCTGAGTGCTTTCAACTCCA+AGG - chr4_1:43759909-43759928 Msa0549010:three_prime_UTR 50.0%
ACAAATACGGCTACAGCGAC+AGG - chr4_1:43761172-43761191 Msa0549010:intron 50.0%
GAGACCCTTAAGCATGTGGT+TGG - chr4_1:43761671-43761690 Msa0549010:intron 50.0%
TCTTCTTCGGGGAACATGTG+GGG + chr4_1:43761764-43761783 None:intergenic 50.0%
AGCTTCAAGGAGCAGTAGGA+TGG - chr4_1:43762678-43762697 Msa0549010:intron 50.0%
TTGTGTCGTATCCATGGGAG+AGG - chr4_1:43762737-43762756 Msa0549010:intron 50.0%
TGGAGAGACAGCTTCTTCCA+CGG - chr4_1:43763103-43763122 Msa0549010:intron 50.0%
GCTTCTTCCACGGTAAATGC+AGG - chr4_1:43763113-43763132 Msa0549010:intron 50.0%
CTATGGTATGCTCCAATGGG+AGG - chr4_1:43763230-43763249 Msa0549010:intron 50.0%
!! ATCGGTGTCAGTGCTGTGTT+AGG + chr4_1:43763387-43763406 None:intergenic 50.0%
!! CCGGTTGATGAAACCATCCA+TGG + chr4_1:43763670-43763689 None:intergenic 50.0%
GGTCCCAAAGGAAGACATGT+AGG + chr4_1:43763768-43763787 None:intergenic 50.0%
!! CTTCCTTTGGGACCGAACAA+TGG - chr4_1:43763774-43763793 Msa0549010:intron 50.0%
TAGCCATTGTTCGGTCCCAA+AGG + chr4_1:43763780-43763799 None:intergenic 50.0%
!! GGTGGTAATGGCAACACAGA+GGG + chr4_1:43763841-43763860 None:intergenic 50.0%
!! AGGTGGTAATGGCAACACAG+AGG + chr4_1:43763842-43763861 None:intergenic 50.0%
CGGTGTGCCAATTGAACTTG+AGG + chr4_1:43763862-43763881 None:intergenic 50.0%
!! ATCTTGAGAGAGGTGCCGTT+GGG - chr4_1:43763968-43763987 Msa0549010:intron 50.0%
TCTCATTGTCCTCCACCAAC+TGG - chr4_1:43764016-43764035 Msa0549010:intron 50.0%
CTCATTGTCCTCCACCAACT+GGG - chr4_1:43764017-43764036 Msa0549010:intron 50.0%
TAAAGGTTCGCAGCGTATCC+CGG + chr4_1:43764072-43764091 None:intergenic 50.0%
CATGTCTCCGGTCCATTCGT+CGG + chr4_1:43759607-43759626 None:intergenic 55.0%
GAGTAGGCGTGAGTCAGTGT+CGG + chr4_1:43762452-43762471 None:intergenic 55.0%
GCACATGTTCTCCTCGGAGT+AGG + chr4_1:43762468-43762487 None:intergenic 55.0%
ATCGCGCTCGTGTGTATCGA+AGG + chr4_1:43762566-43762585 None:intergenic 55.0%
TGTCGTATCCATGGGAGAGG+AGG - chr4_1:43762740-43762759 Msa0549010:intron 55.0%
AGTTTACCGGCCACACGTTC+AGG - chr4_1:43763565-43763584 Msa0549010:intron 55.0%
CTTAGTCCTGAACGTGTGGC+CGG + chr4_1:43763574-43763593 None:intergenic 55.0%
CACAGAGGGAGACAAGGGTT+TGG + chr4_1:43763827-43763846 None:intergenic 55.0%
GGCAACACAGAGGGAGACAA+GGG + chr4_1:43763832-43763851 None:intergenic 55.0%
TGGCAACACAGAGGGAGACA+AGG + chr4_1:43763833-43763852 None:intergenic 55.0%
GCACCTCTCTCAAGATGCGT+CGG + chr4_1:43763964-43763983 None:intergenic 55.0%
!! CATCTTGAGAGAGGTGCCGT+TGG - chr4_1:43763967-43763986 Msa0549010:intron 55.0%
!! TCTTGAGAGAGGTGCCGTTG+GGG - chr4_1:43763969-43763988 Msa0549010:intron 55.0%
GTCACGAGAGGGTGAGTCTG+AGG + chr4_1:43759541-43759560 None:intergenic 60.0%
! ACTGACTCACGCCTACTCCG+AGG - chr4_1:43762454-43762473 Msa0549010:intron 60.0%
TCCATGGGAGAGGAGGATGC+AGG - chr4_1:43762747-43762766 Msa0549010:intron 60.0%
TCCTGCATCCTCCTCTCCCA+TGG + chr4_1:43762751-43762770 None:intergenic 60.0%
CACTAGCCCGAGCAAACGCA+TGG - chr4_1:43762869-43762888 Msa0549010:intron 60.0%
CAGCCGACGCATCTTGAGAG+AGG - chr4_1:43763958-43763977 Msa0549010:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 43759410 43764592 43759410 ID=Msa0549010;Name=Msa0549010
chr4_1 mRNA 43759410 43764592 43759410 ID=Msa0549010-mRNA-1;Parent=Msa0549010;Name=Msa0549010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=88|0.5|0.66|1|1|1|3|548|382
chr4_1 exon 43759410 43760482 43759410 ID=Msa0549010-mRNA-1:exon:11284;Parent=Msa0549010-mRNA-1
chr4_1 exon 43760677 43760867 43760677 ID=Msa0549010-mRNA-1:exon:11283;Parent=Msa0549010-mRNA-1
chr4_1 exon 43764072 43764592 43764072 ID=Msa0549010-mRNA-1:exon:11282;Parent=Msa0549010-mRNA-1
chr4_1 five_prime_UTR 43764505 43764592 43764505 ID=Msa0549010-mRNA-1:five_prime_utr;Parent=Msa0549010-mRNA-1
chr4_1 CDS 43764072 43764504 43764072 ID=Msa0549010-mRNA-1:cds;Parent=Msa0549010-mRNA-1
chr4_1 CDS 43760677 43760867 43760677 ID=Msa0549010-mRNA-1:cds;Parent=Msa0549010-mRNA-1
chr4_1 CDS 43759958 43760482 43759958 ID=Msa0549010-mRNA-1:cds;Parent=Msa0549010-mRNA-1
chr4_1 three_prime_UTR 43759410 43759957 43759410 ID=Msa0549010-mRNA-1:three_prime_utr;Parent=Msa0549010-mRNA-1
Gene Sequence

>Msa0549010

ATGACCATGGACCGATCATCATCACAAAGCAGCTCAAAATCCTCAGACTCACCCTCTCGTGACTTCAAAGTCCTATCCATAGAATGCTACAAAGGCAGCTCAAAATCCGACGAATGGACCGGAGACATGCTTCAAACCGGTGACATAGTTGAAGAGTTTCGAGTTGGTGGTTCAGCTAACTCATTGATAAGGTTCAAAGCACCTTTCAAGAATGGAAAAAGTGGTGTAAATAAGATTCTTCAAGAAGCTTATAAGAAGAAAGATACTTCTATACTTGTAAGAGTACGTAGAGGAGTTGATGAGTTTGCTGAGTTACAAGGCTGTATTGTTCCTAATGAGAATAAGAAGAGTTATGTTCTTAGAGATATTGTTGATCCTAATTATCTTGTTGGGTTTTTGGATCGAACTGAAGCTGAGTGCTTTCAACTCCAAGGGTCATTATCCGACTTATGCAACATTGCAAATGCAAGTCTTTATGGTTTCGAAGATTATCACGGAGTAGACATTGGCGTTGTTAGAGCAATTCGACTATGGTATGCTCCAATGGGAGGAGAGTTCTCAATAGAGATAAAACTTAGAGAGGAAGATACAAAGCTCGGCTTTGCCATTAGTCGTACAGAAGAGGGTTTTATATTCATCTCATCATCAGTAATTGACGAAGGTAAAGAAAGTTTACCGGCCACACGTTCAGGACTAAGCAATCTATACAAACTAGCAACAGAAACTTCAAGGTTATTGGTAGTTTCAAGGCTTTCAAATCAAAGAGTCCTTCCATGGATGGTTTCATCAACCGGAGCAATTCGTTGTTACGACACTGTTTCATTGAGCCAGAAACTCTCCTTACATCGACACACTAAAGTTCCTATTCTCCTACATGTCTTCCTTTGGGACCGAACAATGGCTACTTCAAGTGCAGAAAGTACAAAATCCAAACCCTTGTCTCCCTCTGTGTTGCCATTACCACCTCAAGTTCAATTGGCACACCGTCCTAACGAGAACCAAATACAGCCATTATCATGTGAAGGATCTAATCCAACTGATATCAATATCAGTGATAGTTCTCAGCCGACGCATCTTGAGAGAGGTGCCGTTGGGGATGTCTCATTCAGATTCCAGGATTTCTCATTGTCCTCCACCAACTGGGTATGA
Protein sequence

>Msa0549010

MTMDRSSSQSSSKSSDSPSRDFKVLSIECYKGSSKSDEWTGDMLQTGDIVEEFRVGGSANSLIRFKAPFKNGKSGVNKILQEAYKKKDTSILVRVRRGVDEFAELQGCIVPNENKKSYVLRDIVDPNYLVGFLDRTEAECFQLQGSLSDLCNIANASLYGFEDYHGVDIGVVRAIRLWYAPMGGEFSIEIKLREEDTKLGFAISRTEEGFIFISSSVIDEGKESLPATRSGLSNLYKLATETSRLLVVSRLSNQRVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTKVPILLHVFLWDRTMATSSAESTKSKPLSPSVLPLPPQVQLAHRPNENQIQPLSCEGSNPTDINISDSSQPTHLERGAVGDVSFRFQDFSLSSTNWV*