AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645350 MtrunA17_Chr4g0033031 98.364 489 8 0 1 489 1 489 0.0 991
Msa0645350 MtrunA17_Chr2g0329071 75.000 492 110 7 1 489 1 482 0.0 746
Msa0645350 MtrunA17_Chr3g0136071 30.047 213 124 7 36 240 19 214 4.19e-20 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645350 AT4G12070.1 61.006 477 156 7 24 485 19 480 0.0 567

Find 144 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCAAATGCAAGTCTTTA+TGG 0.092607 4_3:+50338924 Msa0645350:CDS
CCTTTATATTGTGGTAAAAT+AGG 0.179969 4_3:+50339852 Msa0645350:three_prime_UTR
GAAAGAAAGTTGCTAGAATT+TGG 0.206757 4_3:-50338550 None:intergenic
CACATGATAATGGCTGTATT+TGG 0.216961 4_3:-50339660 None:intergenic
AACAGAAACTTCAAGGTTAT+TGG 0.220695 4_3:+50339378 Msa0645350:CDS
ACACAAATCCGTCTTGTATT+CGG 0.245069 4_3:-50338486 None:intergenic
GCTGCCTTTGTAGCATTCTA+TGG 0.255561 4_3:-50335428 None:intergenic
TTCTCCTACATGTCTTCCTT+TGG 0.262059 4_3:+50339527 Msa0645350:CDS
CTTAATGCAGCTCAAGCTTC+AGG 0.272942 4_3:+50338658 Msa0645350:CDS
CACAAATCCGTCTTGTATTC+GGG 0.275599 4_3:-50338485 None:intergenic
TTGGTATGTTACATGTTAAA+TGG 0.286946 4_3:-50340101 None:intergenic
ATCGGTCCATGGTCATGTTT+TGG 0.301538 4_3:-50335345 None:intergenic
GGCTGTATTTGGTTCTCATT+AGG 0.310402 4_3:-50339649 None:intergenic
GTCGATGTAAGGAGAGTTTC+TGG 0.311540 4_3:-50339489 None:intergenic
GTTGATCCTAATTATCTTGT+TGG 0.311946 4_3:+50335721 Msa0645350:CDS
CATTAAGCCATGCGTTTGCT+CGG 0.326296 4_3:-50338642 None:intergenic
AGCAACTCTATCTGAAGCTT+TGG 0.328522 4_3:-50338587 None:intergenic
TGAATGTTCATAAAGACAAT+AGG 0.336068 4_3:-50338685 None:intergenic
AGTTTACCGGCCACACGTTC+AGG 0.338159 4_3:+50339331 Msa0645350:CDS
TCTCCTACATGTCTTCCTTT+GGG 0.340994 4_3:+50339528 Msa0645350:CDS
TAACTCTTCTTATTCTCATT+AGG 0.341103 4_3:-50335682 None:intergenic
TTGATCCTAATTATCTTGTT+GGG 0.349886 4_3:+50335722 Msa0645350:CDS
ATGATTTACCTTTGTAAGTA+AGG 0.351134 4_3:-50338716 None:intergenic
TTGTATCTGTGACAGATATC+TGG 0.355727 4_3:+50338849 Msa0645350:intron
TCTCATTGTCCTCCACCAAC+TGG 0.362829 4_3:+50339782 Msa0645350:CDS
AGCTTTGGGAAGAAGTAATA+TGG 0.376670 4_3:-50338572 None:intergenic
GGATGTCTCATTCAGATTCC+AGG 0.377533 4_3:+50339756 Msa0645350:CDS
CAACTGGGTATGAATAAGTA+TGG 0.377698 4_3:+50339798 Msa0645350:exon
AACCTCTTCTGTACGACTAA+TGG 0.382104 4_3:-50339072 None:intergenic
AGTATATAACATCATTTAAC+AGG 0.384911 4_3:+50339905 Msa0645350:three_prime_UTR
ATCTTGAGAGAGGTGCCGTT+GGG 0.389150 4_3:+50339734 Msa0645350:CDS
TTAGATCCTTCACATGATAA+TGG 0.391394 4_3:-50339670 None:intergenic
CAAGGTTATTGGTAGTTTCA+AGG 0.392429 4_3:+50339389 Msa0645350:CDS
CCATGGATGGTTTCATCAAC+CGG 0.398531 4_3:+50339433 Msa0645350:CDS
TTGTTAGAGCAATTCGACTA+TGG 0.399167 4_3:+50338979 Msa0645350:CDS
TTCAAAGCACCTTTCAAGAA+TGG 0.401377 4_3:+50335544 Msa0645350:CDS
ATTAATATGCACAAGTGAAA+TGG 0.416623 4_3:-50340073 None:intergenic
AACTAGCAACAGAAACTTCA+AGG 0.431115 4_3:+50339371 Msa0645350:CDS
CGAAGGTAAAGAAAGTTTAC+CGG 0.439767 4_3:+50339318 Msa0645350:CDS
ATTACCACCTCAAGTTCAAT+TGG 0.440043 4_3:+50339618 Msa0645350:CDS
AACTTTAGTGTGTCGATGTA+AGG 0.445676 4_3:-50339500 None:intergenic
AGGAAGACATGTAGGAGAAT+AGG 0.447610 4_3:-50339523 None:intergenic
GCAACTCTATCTGAAGCTTT+GGG 0.447688 4_3:-50338586 None:intergenic
TTTGAAAATGGTTGGTCCAT+AGG 0.448038 4_3:+50340336 Msa0645350:three_prime_UTR
CATGATATACTGTATTGCTT+TGG 0.449479 4_3:+50340163 Msa0645350:three_prime_UTR
GTTCAGCTAACTCATTGATA+AGG 0.463814 4_3:+50335521 Msa0645350:CDS
GTTGAAGAGTTTCGAGTTGG+TGG 0.466680 4_3:+50335499 Msa0645350:CDS
CACAGAGGGAGACAAGGGTT+TGG 0.469242 4_3:-50339590 None:intergenic
CACTTGAAGTAGCCATTGTT+CGG 0.471202 4_3:-50339552 None:intergenic
AGGTGAGTTTACTTTGTATG+TGG 0.472447 4_3:-50335302 None:intergenic
TTGTATGTGGGAGAAGGAGA+AGG 0.476779 4_3:-50335289 None:intergenic
GAATGTTCATAAAGACAATA+GGG 0.477955 4_3:-50338684 None:intergenic
ATTAAGCCATGCGTTTGCTC+GGG 0.480604 4_3:-50338641 None:intergenic
TGGAGGACAATGAGAAATCC+TGG 0.485709 4_3:-50339774 None:intergenic
ACGGATTTGTGTCGTATCCA+TGG 0.485817 4_3:+50338497 Msa0645350:CDS
GCTTCTTCCACGGTAAATGC+AGG 0.488375 4_3:+50338879 Msa0645350:CDS
TCGACTATGGTATGCTCCAA+TGG 0.488995 4_3:+50338992 Msa0645350:CDS
TAAAGGTTCGCAGCGTATCC+CGG 0.489709 4_3:-50339835 None:intergenic
ACCGGTTTGAAGCATGTCTC+CGG 0.492866 4_3:-50335470 None:intergenic
TTAATGCAGCTCAAGCTTCA+GGG 0.497415 4_3:+50338659 Msa0645350:CDS
TACCTTTGTAAGTAAGGACT+CGG 0.500714 4_3:-50338710 None:intergenic
TCACTGATATTGATATCAGT+TGG 0.502078 4_3:-50339694 None:intergenic
ACTGTATTGCTTTGGTCTTG+AGG 0.508281 4_3:+50340171 Msa0645350:three_prime_UTR
AGCTGCTTTGTGATGATGAT+CGG 0.510565 4_3:-50335363 None:intergenic
ACCGGAGACATGCTTCAAAC+CGG 0.510805 4_3:+50335469 Msa0645350:CDS
CGACTATGGTATGCTCCAAT+GGG 0.510854 4_3:+50338993 Msa0645350:CDS
TTTACTTTGTATGTGGGAGA+AGG 0.512339 4_3:-50335295 None:intergenic
TCAAAGAGTCCTTCCATGGA+TGG 0.516208 4_3:+50339420 Msa0645350:CDS
TTTCAGCTTCAAGGAGCAGT+AGG 0.518097 4_3:+50338440 Msa0645350:intron
CGCTGCGAACCTTTATATTG+TGG 0.520932 4_3:+50339843 Msa0645350:three_prime_UTR
ATTGAGAACTCTCCTCCCAT+TGG 0.522546 4_3:-50339008 None:intergenic
CAAATCAAAGAGTCCTTCCA+TGG 0.522589 4_3:+50339416 Msa0645350:CDS
CTTTGTAGCATTCTATGGAT+AGG 0.525828 4_3:-50335423 None:intergenic
CTCATTGTCCTCCACCAACT+GGG 0.526561 4_3:+50339783 Msa0645350:CDS
TCAAAATCCGACGAATGGAC+CGG 0.527320 4_3:+50335451 Msa0645350:CDS
AATTGAACTTGAGGTGGTAA+TGG 0.528123 4_3:-50339616 None:intergenic
TCCTGCATCCTCCTCTCCCA+TGG 0.528730 4_3:-50338514 None:intergenic
ATTTGCAATGTTGCATAAGT+CGG 0.529271 4_3:-50338910 None:intergenic
AAGGAGAAGGAGAAAGTGAG+TGG 0.532171 4_3:-50335276 None:intergenic
CATGTCTCCGGTCCATTCGT+CGG 0.532195 4_3:-50335458 None:intergenic
CAATGGAGTTTATTGATCCA+AGG 0.532642 4_3:-50339975 None:intergenic
AGAAGGAGAAAGTGAGTGGG+TGG 0.534602 4_3:-50335272 None:intergenic
ACTTATTCATACCCAGTTGG+TGG 0.536948 4_3:-50339794 None:intergenic
TGCCATTAGTCGTACAGAAG+AGG 0.540601 4_3:+50339070 Msa0645350:CDS
CTTAGTCCTGAACGTGTGGC+CGG 0.540695 4_3:-50339337 None:intergenic
AGCTTGTTCAGACATAGAAA+AGG 0.546325 4_3:+50340240 Msa0645350:three_prime_UTR
AGGAGAAGGAGAAAGTGAGT+GGG 0.547573 4_3:-50335275 None:intergenic
GGTGAGTTTACTTTGTATGT+GGG 0.552274 4_3:-50335301 None:intergenic
GTATTTGGTTCTCATTAGGA+CGG 0.552647 4_3:-50339645 None:intergenic
GTCGTAACAACGAATTGCTC+CGG 0.553749 4_3:-50339452 None:intergenic
AAACTCTTCAACTATGTCAC+CGG 0.553772 4_3:-50335488 None:intergenic
CGGATTTGTGTCGTATCCAT+GGG 0.557632 4_3:+50338498 Msa0645350:CDS
AACCGAGTCCTTACTTACAA+AGG 0.565901 4_3:+50338708 Msa0645350:CDS
CATCTTGAGAGAGGTGCCGT+TGG 0.566899 4_3:+50339733 Msa0645350:CDS
GATTATCACGGAGTAGACAT+TGG 0.567606 4_3:+50338954 Msa0645350:CDS
AGCTTCAAGGAGCAGTAGGA+TGG 0.567724 4_3:+50338444 Msa0645350:intron
ATAGTTGAAGAGTTTCGAGT+TGG 0.572073 4_3:+50335496 Msa0645350:CDS
CCGGTTGATGAAACCATCCA+TGG 0.572978 4_3:-50339433 None:intergenic
TCCATGGGAGAGGAGGATGC+AGG 0.573681 4_3:+50338513 Msa0645350:CDS
GTCACGAGAGGGTGAGTCTG+AGG 0.578216 4_3:-50335392 None:intergenic
AATAGAGATAAAACTTAGAG+AGG 0.581818 4_3:+50339028 Msa0645350:CDS
TATTCATACCCAGTTGGTGG+AGG 0.582970 4_3:-50339791 None:intergenic
GATGAGTTTGCTGAGTTGCA+AGG 0.583353 4_3:+50335649 Msa0645350:CDS
TATTTCATTTAATTTAACAA+TGG 0.585759 4_3:-50339992 None:intergenic
CTTCCTTTGGGACCGAACAA+TGG 0.586807 4_3:+50339540 Msa0645350:CDS
TTGTGTCGTATCCATGGGAG+AGG 0.587849 4_3:+50338503 Msa0645350:CDS
TGGCAACACAGAGGGAGACA+AGG 0.590701 4_3:-50339596 None:intergenic
CACTAGCCCGAGCAAACGCA+TGG 0.594767 4_3:+50338635 Msa0645350:CDS
GCAGCTCAAAATCCGACGAA+TGG 0.595906 4_3:+50335446 Msa0645350:CDS
TATGGTTTCGAAGATTATCA+CGG 0.596693 4_3:+50338942 Msa0645350:CDS
TGCTTCTCGCTACAATGATG+TGG 0.598991 4_3:+50338606 Msa0645350:CDS
TAATGCAGCTCAAGCTTCAG+GGG 0.601342 4_3:+50338660 Msa0645350:CDS
TCTTGAGAGAGGTGCCGTTG+GGG 0.603270 4_3:+50339735 Msa0645350:CDS
GGTCCCAAAGGAAGACATGT+AGG 0.606339 4_3:-50339531 None:intergenic
CATACTTATTCATACCCAGT+TGG 0.606484 4_3:-50339797 None:intergenic
GGCAACACAGAGGGAGACAA+GGG 0.608189 4_3:-50339595 None:intergenic
TAGCCATTGTTCGGTCCCAA+AGG 0.609219 4_3:-50339543 None:intergenic
TTGTGATGATGATCGGTCCA+TGG 0.611510 4_3:-50335356 None:intergenic
TGTCGTATCCATGGGAGAGG+AGG 0.615371 4_3:+50338506 Msa0645350:CDS
TTGATGAAACCATCCATGGA+AGG 0.617269 4_3:-50339429 None:intergenic
CAGCCGACGCATCTTGAGAG+AGG 0.619905 4_3:+50339724 Msa0645350:CDS
GCTGAGTGCTTTCAACTCCA+AGG 0.619906 4_3:+50335763 Msa0645350:CDS
ACCTTTCCAAAACATGACCA+TGG 0.620615 4_3:+50335339 Msa0645350:exon
TCATGCACAAGCTATCACCT+TGG 0.622291 4_3:+50339958 Msa0645350:three_prime_UTR
TGGAGAGACAGCTTCTTCCA+CGG 0.622895 4_3:+50338869 Msa0645350:CDS
GGTGGTAATGGCAACACAGA+GGG 0.625903 4_3:-50339604 None:intergenic
ATACAGCCATTATCATGTGA+AGG 0.629607 4_3:+50339664 Msa0645350:CDS
AGAGAGGAAGATACAAAGCT+CGG 0.630539 4_3:+50339044 Msa0645350:CDS
CGGTGTGCCAATTGAACTTG+AGG 0.632200 4_3:-50339625 None:intergenic
CTATCCATAGAATGCTACAA+AGG 0.635986 4_3:+50335424 Msa0645350:CDS
CTATGGTATGCTCCAATGGG+AGG 0.639482 4_3:+50338996 Msa0645350:CDS
TGTGGTAAAATAGGAAAATG+CGG 0.639936 4_3:+50339861 Msa0645350:three_prime_UTR
CTTCTTCCACGGTAAATGCA+GGG 0.648908 4_3:+50338880 Msa0645350:CDS
ATTGCTTAGTCCTGAACGTG+TGG 0.649167 4_3:-50339341 None:intergenic
GCACCTCTCTCAAGATGCGT+CGG 0.658569 4_3:-50339727 None:intergenic
AGGACTTTGAAGTCACGAGA+GGG 0.672645 4_3:-50335403 None:intergenic
TAATGACCCTGCATTTACCG+TGG 0.676448 4_3:-50338886 None:intergenic
ATATCATGTATGTACAAACA+AGG 0.687023 4_3:-50340148 None:intergenic
TAGGACTTTGAAGTCACGAG+AGG 0.690395 4_3:-50335404 None:intergenic
TCATCATCAGTAATTGACGA+AGG 0.696045 4_3:+50339301 Msa0645350:CDS
TCTGAATGAGACATCCCCAA+CGG 0.719239 4_3:-50339749 None:intergenic
TGTGCCAATTGAACTTGAGG+TGG 0.723647 4_3:-50339622 None:intergenic
ATACTTGTAAGAGTACGTAG+AGG 0.736627 4_3:+50335622 Msa0645350:CDS
AGGTGGTAATGGCAACACAG+AGG 0.738008 4_3:-50339605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTAAATTTTTTTTTTA+TGG + chr4_3:50336333-50336352 Msa0645350:intron 0.0%
!! TAGATAATTAATTCAATTTA+GGG - chr4_3:50336479-50336498 None:intergenic 10.0%
!!! TATTTCATTTAATTTAACAA+TGG - chr4_3:50339995-50340014 None:intergenic 10.0%
!!! TTTTAGTAGTTTTTTAAACA+TGG + chr4_3:50335829-50335848 Msa0645350:intron 15.0%
!! CAGTGAATTTAATAAAATTA+TGG + chr4_3:50335897-50335916 Msa0645350:intron 15.0%
!! GTAGATAATTAATTCAATTT+AGG - chr4_3:50336480-50336499 None:intergenic 15.0%
!! AATTAAACAAATGAATGTAT+TGG + chr4_3:50336629-50336648 Msa0645350:intron 15.0%
!!! TTTTCCTTCTTTTATTATTA+GGG + chr4_3:50337064-50337083 Msa0645350:intron 15.0%
!! ATATTTATTATTCTAGACTT+GGG - chr4_3:50337811-50337830 None:intergenic 15.0%
!! TATATTTATTATTCTAGACT+TGG - chr4_3:50337812-50337831 None:intergenic 15.0%
!! ATACATTAAACCATATTTAT+TGG + chr4_3:50337829-50337848 Msa0645350:intron 15.0%
!! TTTATAATATCTTCATCTAA+TGG + chr4_3:50338396-50338415 Msa0645350:intron 15.0%
!!! GTTCTATTTTCTTAAATTAT+CGG - chr4_3:50339171-50339190 None:intergenic 15.0%
!!! ACTATTAATCAGATTTTATT+TGG - chr4_3:50339888-50339907 None:intergenic 15.0%
!! TTTCTTAAGAAATGTGAAAA+AGG - chr4_3:50336067-50336086 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG - chr4_3:50336143-50336162 None:intergenic 20.0%
!! ACAAGATAGTAGTATTAATT+AGG + chr4_3:50336184-50336203 Msa0645350:intron 20.0%
!! CAAGATAGTAGTATTAATTA+GGG + chr4_3:50336185-50336204 Msa0645350:intron 20.0%
!! AAGATAGTAGTATTAATTAG+GGG + chr4_3:50336186-50336205 Msa0645350:intron 20.0%
!! ATGCATATAGTAATTTGAAA+AGG + chr4_3:50336233-50336252 Msa0645350:intron 20.0%
!! TGCATATAGTAATTTGAAAA+GGG + chr4_3:50336234-50336253 Msa0645350:intron 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + chr4_3:50336269-50336288 Msa0645350:intron 20.0%
!! TTAAATCACATTGAAAATGA+TGG + chr4_3:50336415-50336434 Msa0645350:intron 20.0%
!! TCATTAGTGTAGATTAAATT+TGG + chr4_3:50336527-50336546 Msa0645350:intron 20.0%
!!! TTCATTTGTTTAATTTAACC+TGG - chr4_3:50336624-50336643 None:intergenic 20.0%
!!! GTTTTCCTTCTTTTATTATT+AGG + chr4_3:50337063-50337082 Msa0645350:intron 20.0%
!!! GCAATGTGATTTTATTTTTT+GGG - chr4_3:50337518-50337537 None:intergenic 20.0%
!!! AGCAATGTGATTTTATTTTT+TGG - chr4_3:50337519-50337538 None:intergenic 20.0%
!! AAAATAAAATCACATTGCTT+CGG + chr4_3:50337520-50337539 Msa0645350:intron 20.0%
!! TAGATAAGTAATTAAAGAGA+AGG + chr4_3:50337976-50337995 Msa0645350:intron 20.0%
!! TTGTGATTCTTAATACTTTA+TGG + chr4_3:50338019-50338038 Msa0645350:intron 20.0%
!! TGTGATTCTTAATACTTTAT+GGG + chr4_3:50338020-50338039 Msa0645350:intron 20.0%
!! AATACATTATACCAGTATAT+AGG - chr4_3:50338288-50338307 None:intergenic 20.0%
!!! TAATAATTTTGTGATCAACA+GGG + chr4_3:50339265-50339284 Msa0645350:intron 20.0%
!! AGTATATAACATCATTTAAC+AGG + chr4_3:50339905-50339924 Msa0645350:three_prime_UTR 20.0%
!!! AGTTATTCAACTTTTGAAAA+TGG + chr4_3:50340324-50340343 Msa0645350:three_prime_UTR 20.0%
! TAACTCTTCTTATTCTCATT+AGG - chr4_3:50335685-50335704 None:intergenic 25.0%
! TTGATCCTAATTATCTTGTT+GGG + chr4_3:50335722-50335741 Msa0645350:CDS 25.0%
! AAAAACCCAACAAGATAATT+AGG - chr4_3:50335730-50335749 None:intergenic 25.0%
!! TAATTATCTTGTTGGGTTTT+TGG + chr4_3:50335729-50335748 Msa0645350:CDS 25.0%
! AGTTAGAATTCGTGTATATT+TGG + chr4_3:50335869-50335888 Msa0645350:intron 25.0%
! TTAGGTTCAACTTAGATTAA+TGG - chr4_3:50335974-50335993 None:intergenic 25.0%
! GCAATAAGTGACTAAATTAA+GGG - chr4_3:50336045-50336064 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr4_3:50336196-50336215 Msa0645350:intron 25.0%
! GCATATAGTAATTTGAAAAG+GGG + chr4_3:50336235-50336254 Msa0645350:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG + chr4_3:50336268-50336287 Msa0645350:intron 25.0%
!! AACACCATTACCTTAATTTT+TGG + chr4_3:50336967-50336986 Msa0645350:intron 25.0%
!! AGTACTACTATCATTTTATG+TGG - chr4_3:50337009-50337028 None:intergenic 25.0%
! TTAATCTCATACAAATGTGA+GGG + chr4_3:50337036-50337055 Msa0645350:intron 25.0%
! TTGACCCTAATAATAAAAGA+AGG - chr4_3:50337071-50337090 None:intergenic 25.0%
! TTATTAGGGTCAAAATTCAT+CGG + chr4_3:50337078-50337097 Msa0645350:intron 25.0%
!! TAAGCCAAAAACAACTTTTT+AGG + chr4_3:50337589-50337608 Msa0645350:intron 25.0%
!!! TGTACCTAAAAAGTTGTTTT+TGG - chr4_3:50337596-50337615 None:intergenic 25.0%
! AAACAGATAATTGTCCAAAA+AGG - chr4_3:50337738-50337757 None:intergenic 25.0%
!! TTTTTGGACAATTATCTGTT+TGG + chr4_3:50337737-50337756 Msa0645350:intron 25.0%
! GTTATTGTCTCCAATAAATA+TGG - chr4_3:50337842-50337861 None:intergenic 25.0%
! ACTATACTGTATTCAATCAA+GGG - chr4_3:50338264-50338283 None:intergenic 25.0%
! TACTGGTATAATGTATTTGA+AGG + chr4_3:50338291-50338310 Msa0645350:intron 25.0%
! GAATGTTCATAAAGACAATA+GGG - chr4_3:50338687-50338706 None:intergenic 25.0%
! TGAATGTTCATAAAGACAAT+AGG - chr4_3:50338688-50338707 None:intergenic 25.0%
! ATGATTTACCTTTGTAAGTA+AGG - chr4_3:50338719-50338738 None:intergenic 25.0%
! ATACAATTGTAAAATGGTCA+GGG - chr4_3:50338747-50338766 None:intergenic 25.0%
!! TGACCATTTTACAATTGTAT+CGG + chr4_3:50338747-50338766 Msa0645350:intron 25.0%
! AATCCGATACAATTGTAAAA+TGG - chr4_3:50338753-50338772 None:intergenic 25.0%
!! GACAAACAACAAATTTTATG+AGG - chr4_3:50338829-50338848 None:intergenic 25.0%
! AATAGAGATAAAACTTAGAG+AGG + chr4_3:50339028-50339047 Msa0645350:CDS 25.0%
!! CTAATAATTTTGTGATCAAC+AGG + chr4_3:50339264-50339283 Msa0645350:intron 25.0%
!! CCTATTTTACCACAATATAA+AGG - chr4_3:50339855-50339874 None:intergenic 25.0%
! CCTTTATATTGTGGTAAAAT+AGG + chr4_3:50339852-50339871 Msa0645350:three_prime_UTR 25.0%
! ATTAATATGCACAAGTGAAA+TGG - chr4_3:50340076-50340095 None:intergenic 25.0%
! TTGGTATGTTACATGTTAAA+TGG - chr4_3:50340104-50340123 None:intergenic 25.0%
! AAAAAGAACATGGATGATAT+TGG - chr4_3:50340123-50340142 None:intergenic 25.0%
! ATATCATGTATGTACAAACA+AGG - chr4_3:50340151-50340170 None:intergenic 25.0%
!!! TTGAGGCTTTTAATTTGTTA+GGG + chr4_3:50340188-50340207 Msa0645350:three_prime_UTR 25.0%
!!! ATTCAACTTTTGAAAATGGT+TGG + chr4_3:50340328-50340347 Msa0645350:three_prime_UTR 25.0%
!! AAAGGTTTGGATTTTGTTTG+AGG - chr4_3:50335325-50335344 None:intergenic 30.0%
!!! CCATTTTTTCCATTCTTGAA+AGG - chr4_3:50335556-50335575 None:intergenic 30.0%
CCTTTCAAGAATGGAAAAAA+TGG + chr4_3:50335553-50335572 Msa0645350:CDS 30.0%
GTTGATCCTAATTATCTTGT+TGG + chr4_3:50335721-50335740 Msa0645350:CDS 30.0%
ATTAAGAAGTAACAGTACCT+TGG - chr4_3:50335783-50335802 None:intergenic 30.0%
! TATGGTTACATCGATGATTT+TGG + chr4_3:50335915-50335934 Msa0645350:intron 30.0%
TCAACTTGGAGATAACAATT+AGG - chr4_3:50335992-50336011 None:intergenic 30.0%
ATTAGGAGAACAAATCAACT+TGG - chr4_3:50336006-50336025 None:intergenic 30.0%
TAAGTGACTAAATTAAGGGA+CGG - chr4_3:50336041-50336060 None:intergenic 30.0%
GGCAATAAGTGACTAAATTA+AGG - chr4_3:50336046-50336065 None:intergenic 30.0%
! TCAATTTAGGGTTAAAGTTG+TGG - chr4_3:50336467-50336486 None:intergenic 30.0%
AGCAACAAAGTCACATATTA+TGG - chr4_3:50336677-50336696 None:intergenic 30.0%
ATATGTGACTTTGTTGCTAT+TGG + chr4_3:50336679-50336698 Msa0645350:intron 30.0%
GTAGTTACTTCTTAGTTACA+CGG + chr4_3:50336724-50336743 Msa0645350:intron 30.0%
!!! TTAAGGTAATGGTGTTGTTT+TGG - chr4_3:50336963-50336982 None:intergenic 30.0%
CCTACCAAAAATTAAGGTAA+TGG - chr4_3:50336974-50336993 None:intergenic 30.0%
!!! CCATTACCTTAATTTTTGGT+AGG + chr4_3:50336971-50336990 Msa0645350:intron 30.0%
AAGCTACCTACCAAAAATTA+AGG - chr4_3:50336980-50336999 None:intergenic 30.0%
CTTAATCTCATACAAATGTG+AGG + chr4_3:50337035-50337054 Msa0645350:intron 30.0%
TGATCTAGCAAAAAATACGA+AGG + chr4_3:50337217-50337236 Msa0645350:intron 30.0%
GATCTAGCAAAAAATACGAA+GGG + chr4_3:50337218-50337237 Msa0645350:intron 30.0%
CATATGGAAAAATTCCAGTT+TGG + chr4_3:50337409-50337428 Msa0645350:intron 30.0%
!!! TTTTGGCTTATAAATGTGAC+CGG - chr4_3:50337579-50337598 None:intergenic 30.0%
!! AAATAAGCATTTGGCCTTTT+TGG + chr4_3:50337721-50337740 Msa0645350:intron 30.0%
ATGTCTATATCAGACACAAA+AGG - chr4_3:50337930-50337949 None:intergenic 30.0%
TCTAAAGATGTGAAAAATGC+TGG - chr4_3:50337960-50337979 None:intergenic 30.0%
TAAAGAGAAGGAAAGTAAAG+AGG + chr4_3:50337988-50338007 Msa0645350:intron 30.0%
CACTATACTGTATTCAATCA+AGG - chr4_3:50338265-50338284 None:intergenic 30.0%
GAAAGAAAGTTGCTAGAATT+TGG - chr4_3:50338553-50338572 None:intergenic 30.0%
GATACAATTGTAAAATGGTC+AGG - chr4_3:50338748-50338767 None:intergenic 30.0%
GTTTGACCTTAAAATCGTAA+GGG - chr4_3:50338787-50338806 None:intergenic 30.0%
AGTTTGACCTTAAAATCGTA+AGG - chr4_3:50338788-50338807 None:intergenic 30.0%
ATTTGCAATGTTGCATAAGT+CGG - chr4_3:50338913-50338932 None:intergenic 30.0%
ATTGCAAATGCAAGTCTTTA+TGG + chr4_3:50338924-50338943 Msa0645350:CDS 30.0%
TATGGTTTCGAAGATTATCA+CGG + chr4_3:50338942-50338961 Msa0645350:CDS 30.0%
TCAATGTTTCATAGCATGTA+CGG - chr4_3:50339118-50339137 None:intergenic 30.0%
AACAGAAACTTCAAGGTTAT+TGG + chr4_3:50339378-50339397 Msa0645350:CDS 30.0%
TTAGATCCTTCACATGATAA+TGG - chr4_3:50339673-50339692 None:intergenic 30.0%
TCACTGATATTGATATCAGT+TGG - chr4_3:50339697-50339716 None:intergenic 30.0%
TGTGGTAAAATAGGAAAATG+CGG + chr4_3:50339861-50339880 Msa0645350:three_prime_UTR 30.0%
CATGATATACTGTATTGCTT+TGG + chr4_3:50340163-50340182 Msa0645350:three_prime_UTR 30.0%
!!! CTTGAGGCTTTTAATTTGTT+AGG + chr4_3:50340187-50340206 Msa0645350:three_prime_UTR 30.0%
!!! AATTGCTTTTTGTGCTTAGT+GGG + chr4_3:50340279-50340298 Msa0645350:three_prime_UTR 30.0%
TTTACTTTGTATGTGGGAGA+AGG - chr4_3:50335298-50335317 None:intergenic 35.0%
GGTGAGTTTACTTTGTATGT+GGG - chr4_3:50335304-50335323 None:intergenic 35.0%
AGGTGAGTTTACTTTGTATG+TGG - chr4_3:50335305-50335324 None:intergenic 35.0%
CTTTGTAGCATTCTATGGAT+AGG - chr4_3:50335426-50335445 None:intergenic 35.0%
CTATCCATAGAATGCTACAA+AGG + chr4_3:50335424-50335443 Msa0645350:CDS 35.0%
AAACTCTTCAACTATGTCAC+CGG - chr4_3:50335491-50335510 None:intergenic 35.0%
! ATAGTTGAAGAGTTTCGAGT+TGG + chr4_3:50335496-50335515 Msa0645350:CDS 35.0%
GTTCAGCTAACTCATTGATA+AGG + chr4_3:50335521-50335540 Msa0645350:CDS 35.0%
! TTCAAAGCACCTTTCAAGAA+TGG + chr4_3:50335544-50335563 Msa0645350:CDS 35.0%
! ATACTTGTAAGAGTACGTAG+AGG + chr4_3:50335622-50335641 Msa0645350:CDS 35.0%
TTGAAAAGGGGTTTACATGT+AGG + chr4_3:50336247-50336266 Msa0645350:intron 35.0%
TGAAAAGGGGTTTACATGTA+GGG + chr4_3:50336248-50336267 Msa0645350:intron 35.0%
! TATTTGATGTGTCGATATCC+AGG + chr4_3:50336603-50336622 Msa0645350:intron 35.0%
TTACTTCTTAGTTACACGGT+TGG + chr4_3:50336728-50336747 Msa0645350:intron 35.0%
CTTACAGCTACTAACAAGTA+CGG + chr4_3:50336849-50336868 Msa0645350:intron 35.0%
!!! ATGGTGTTGTTTTGGCAAAT+GGG - chr4_3:50336955-50336974 None:intergenic 35.0%
!!! AATGGTGTTGTTTTGGCAAA+TGG - chr4_3:50336956-50336975 None:intergenic 35.0%
!!! TTTTTGGTAGGTAGCTTGTT+TGG + chr4_3:50336983-50337002 Msa0645350:intron 35.0%
CATGTATATGTCTCATACCA+CGG + chr4_3:50337167-50337186 Msa0645350:intron 35.0%
ATGGAAAAATTCCAGTTTGG+AGG + chr4_3:50337412-50337431 Msa0645350:intron 35.0%
TTGCTTATAAATGTGACCAG+AGG + chr4_3:50337691-50337710 Msa0645350:intron 35.0%
TGCTTATAAATGTGACCAGA+GGG + chr4_3:50337692-50337711 Msa0645350:intron 35.0%
! GGGAGTACAAAATAAGCATT+TGG + chr4_3:50337712-50337731 Msa0645350:intron 35.0%
!! CATTAGCCTTGATCTATACA+TGG + chr4_3:50338087-50338106 Msa0645350:intron 35.0%
! ATACGTATCATATCTGAGAC+TGG - chr4_3:50338195-50338214 None:intergenic 35.0%
ACAGTATAGTGCCTATATAC+TGG + chr4_3:50338274-50338293 Msa0645350:intron 35.0%
TTTGTTGAGCAATGCAGTTA+CGG + chr4_3:50338359-50338378 Msa0645350:intron 35.0%
! AACTGTACTTTTCAGCTTCA+AGG + chr4_3:50338431-50338450 Msa0645350:intron 35.0%
ACAAAAACCCGAATACAAGA+CGG + chr4_3:50338478-50338497 Msa0645350:CDS 35.0%
ACACAAATCCGTCTTGTATT+CGG - chr4_3:50338489-50338508 None:intergenic 35.0%
!! AGCTTTGGGAAGAAGTAATA+TGG - chr4_3:50338575-50338594 None:intergenic 35.0%
TACCTTTGTAAGTAAGGACT+CGG - chr4_3:50338713-50338732 None:intergenic 35.0%
!!! AAGGTCAAACTTTTGCTGTT+AGG + chr4_3:50338797-50338816 Msa0645350:intron 35.0%
TTGTATCTGTGACAGATATC+TGG + chr4_3:50338849-50338868 Msa0645350:intron 35.0%
TTGTTAGAGCAATTCGACTA+TGG + chr4_3:50338979-50338998 Msa0645350:CDS 35.0%
ATGTACGGAAAATTCAGAGT+GGG - chr4_3:50339103-50339122 None:intergenic 35.0%
TCATCATCAGTAATTGACGA+AGG + chr4_3:50339301-50339320 Msa0645350:CDS 35.0%
CGAAGGTAAAGAAAGTTTAC+CGG + chr4_3:50339318-50339337 Msa0645350:CDS 35.0%
AACTAGCAACAGAAACTTCA+AGG + chr4_3:50339371-50339390 Msa0645350:CDS 35.0%
! CAAGGTTATTGGTAGTTTCA+AGG + chr4_3:50339389-50339408 Msa0645350:CDS 35.0%
! AACTTTAGTGTGTCGATGTA+AGG - chr4_3:50339503-50339522 None:intergenic 35.0%
AATTGAACTTGAGGTGGTAA+TGG - chr4_3:50339619-50339638 None:intergenic 35.0%
ATTACCACCTCAAGTTCAAT+TGG + chr4_3:50339618-50339637 Msa0645350:CDS 35.0%
!! GTATTTGGTTCTCATTAGGA+CGG - chr4_3:50339648-50339667 None:intergenic 35.0%
!! CACATGATAATGGCTGTATT+TGG - chr4_3:50339663-50339682 None:intergenic 35.0%
ATACAGCCATTATCATGTGA+AGG + chr4_3:50339664-50339683 Msa0645350:CDS 35.0%
CATACTTATTCATACCCAGT+TGG - chr4_3:50339800-50339819 None:intergenic 35.0%
CAACTGGGTATGAATAAGTA+TGG + chr4_3:50339798-50339817 Msa0645350:exon 35.0%
!!! TATGGTTTTAAACTGCAGTC+CGG + chr4_3:50339816-50339835 Msa0645350:three_prime_UTR 35.0%
CAATGGAGTTTATTGATCCA+AGG - chr4_3:50339978-50339997 None:intergenic 35.0%
!!! ACAACTGTCGTTTTCATCAT+TGG - chr4_3:50340040-50340059 None:intergenic 35.0%
CAAGGTGAACAAAAAGAACA+TGG - chr4_3:50340133-50340152 None:intergenic 35.0%
! AGCTTGTTCAGACATAGAAA+AGG + chr4_3:50340240-50340259 Msa0645350:three_prime_UTR 35.0%
!!! GAATTGCTTTTTGTGCTTAG+TGG + chr4_3:50340278-50340297 Msa0645350:three_prime_UTR 35.0%
!!! GGTCATGTTTTGGAAAGGTT+TGG - chr4_3:50335338-50335357 None:intergenic 40.0%
ACCTTTCCAAAACATGACCA+TGG + chr4_3:50335339-50335358 Msa0645350:exon 40.0%
!!! TCCATGGTCATGTTTTGGAA+AGG - chr4_3:50335343-50335362 None:intergenic 40.0%
! AGCTGCTTTGTGATGATGAT+CGG - chr4_3:50335366-50335385 None:intergenic 40.0%
GACGGAGGGAGTAAAAAATT+AGG - chr4_3:50336023-50336042 None:intergenic 40.0%
TGACTAAATTAAGGGACGGA+GGG - chr4_3:50336037-50336056 None:intergenic 40.0%
!!! TTTTTTGCACGAAGACTTCG+TGG - chr4_3:50336363-50336382 None:intergenic 40.0%
! GTGACTTTGTTGCTATTGGT+TGG + chr4_3:50336683-50336702 Msa0645350:intron 40.0%
!! TTGGTTGATTAGTCTGCAGA+TGG + chr4_3:50336702-50336721 Msa0645350:intron 40.0%
! CGTACTTGTTAGTAGCTGTA+AGG - chr4_3:50336851-50336870 None:intergenic 40.0%
! CGACAGGTAATAAAAGCACA+CGG + chr4_3:50336878-50336897 Msa0645350:intron 40.0%
!!! TGGTGTTGTTTTGGCAAATG+GGG - chr4_3:50336954-50336973 None:intergenic 40.0%
CGTGTGTTTGATATCACGAT+AGG + chr4_3:50337105-50337124 Msa0645350:intron 40.0%
TCATACCACGGTGAATTTGT+TGG + chr4_3:50337179-50337198 Msa0645350:intron 40.0%
AATCACGTTGCTACCAACAA+TGG + chr4_3:50337318-50337337 Msa0645350:intron 40.0%
CACTTTGACCAATCCATTGT+TGG - chr4_3:50337334-50337353 None:intergenic 40.0%
!! CAACAATGGATTGGTCAAAG+TGG + chr4_3:50337332-50337351 Msa0645350:intron 40.0%
ACCTCTAACCACATGCTTAA+GGG - chr4_3:50337372-50337391 None:intergenic 40.0%
AACCTCTAACCACATGCTTA+AGG - chr4_3:50337373-50337392 None:intergenic 40.0%
TTAAGCATGTGGTTAGAGGT+TGG + chr4_3:50337372-50337391 Msa0645350:intron 40.0%
! TTTTTCCATATGCATGAGCC+AGG - chr4_3:50337401-50337420 None:intergenic 40.0%
!! AATTTGTTGGGCACACAAAG+TGG - chr4_3:50337445-50337464 None:intergenic 40.0%
! TCTCCATCGTGGAATTTGTT+GGG - chr4_3:50337457-50337476 None:intergenic 40.0%
ATCTCCATCGTGGAATTTGT+TGG - chr4_3:50337458-50337477 None:intergenic 40.0%
GGAGATTAGTGACAGTTAAG+CGG + chr4_3:50337472-50337491 Msa0645350:intron 40.0%
! ACATTGCTTCGGTGTGATTT+CGG + chr4_3:50337531-50337550 Msa0645350:intron 40.0%
!!! TGCTTATTTTGTACTCCCTC+TGG - chr4_3:50337710-50337729 None:intergenic 40.0%
ATGAGTAACACGCAACTTGA+TGG - chr4_3:50337902-50337921 None:intergenic 40.0%
CCTTGATCTATACATGGACA+CGG + chr4_3:50338093-50338112 Msa0645350:intron 40.0%
CTTGATCTATACATGGACAC+GGG + chr4_3:50338094-50338113 Msa0645350:intron 40.0%
TATGAAGCACATGTTCTCCT+CGG - chr4_3:50338240-50338259 None:intergenic 40.0%
CACAAATCCGTCTTGTATTC+GGG - chr4_3:50338488-50338507 None:intergenic 40.0%
! GCAACTCTATCTGAAGCTTT+GGG - chr4_3:50338589-50338608 None:intergenic 40.0%
! AGCAACTCTATCTGAAGCTT+TGG - chr4_3:50338590-50338609 None:intergenic 40.0%
TTAATGCAGCTCAAGCTTCA+GGG + chr4_3:50338659-50338678 Msa0645350:CDS 40.0%
AACCGAGTCCTTACTTACAA+AGG + chr4_3:50338708-50338727 Msa0645350:CDS 40.0%
! CTCTGTCCCTTACGATTTTA+AGG + chr4_3:50338778-50338797 Msa0645350:intron 40.0%
GATTATCACGGAGTAGACAT+TGG + chr4_3:50338954-50338973 Msa0645350:CDS 40.0%
AGAGAGGAAGATACAAAGCT+CGG + chr4_3:50339044-50339063 Msa0645350:CDS 40.0%
AACCTCTTCTGTACGACTAA+TGG - chr4_3:50339075-50339094 None:intergenic 40.0%
CATGTACGGAAAATTCAGAG+TGG - chr4_3:50339104-50339123 None:intergenic 40.0%
TTCGACACTTCAAACTCGAT+CGG - chr4_3:50339193-50339212 None:intergenic 40.0%
CAAATCAAAGAGTCCTTCCA+TGG + chr4_3:50339416-50339435 Msa0645350:CDS 40.0%
TTGATGAAACCATCCATGGA+AGG - chr4_3:50339432-50339451 None:intergenic 40.0%
AGGAAGACATGTAGGAGAAT+AGG - chr4_3:50339526-50339545 None:intergenic 40.0%
TTCTCCTACATGTCTTCCTT+TGG + chr4_3:50339527-50339546 Msa0645350:CDS 40.0%
TCTCCTACATGTCTTCCTTT+GGG + chr4_3:50339528-50339547 Msa0645350:CDS 40.0%
CACTTGAAGTAGCCATTGTT+CGG - chr4_3:50339555-50339574 None:intergenic 40.0%
!! GGCTGTATTTGGTTCTCATT+AGG - chr4_3:50339652-50339671 None:intergenic 40.0%
ACTTATTCATACCCAGTTGG+TGG - chr4_3:50339797-50339816 None:intergenic 40.0%
!!! ATGGTTTTAAACTGCAGTCC+GGG + chr4_3:50339817-50339836 Msa0645350:three_prime_UTR 40.0%
!! ACTGTATTGCTTTGGTCTTG+AGG + chr4_3:50340171-50340190 Msa0645350:three_prime_UTR 40.0%
!! TTTTTGTGCTTAGTGGGTAG+TGG + chr4_3:50340285-50340304 Msa0645350:three_prime_UTR 40.0%
AGGAGAAGGAGAAAGTGAGT+GGG - chr4_3:50335278-50335297 None:intergenic 45.0%
AAGGAGAAGGAGAAAGTGAG+TGG - chr4_3:50335279-50335298 None:intergenic 45.0%
TTGTATGTGGGAGAAGGAGA+AGG - chr4_3:50335292-50335311 None:intergenic 45.0%
! ATCGGTCCATGGTCATGTTT+TGG - chr4_3:50335348-50335367 None:intergenic 45.0%
! TTGTGATGATGATCGGTCCA+TGG - chr4_3:50335359-50335378 None:intergenic 45.0%
!! AGGACTTTGAAGTCACGAGA+GGG - chr4_3:50335406-50335425 None:intergenic 45.0%
!! TAGGACTTTGAAGTCACGAG+AGG - chr4_3:50335407-50335426 None:intergenic 45.0%
GCTGCCTTTGTAGCATTCTA+TGG - chr4_3:50335431-50335450 None:intergenic 45.0%
TCAAAATCCGACGAATGGAC+CGG + chr4_3:50335451-50335470 Msa0645350:CDS 45.0%
!! GTTGAAGAGTTTCGAGTTGG+TGG + chr4_3:50335499-50335518 Msa0645350:CDS 45.0%
!! GATGAGTTTGCTGAGTTGCA+AGG + chr4_3:50335649-50335668 Msa0645350:CDS 45.0%
GTGACTAAATTAAGGGACGG+AGG - chr4_3:50336038-50336057 None:intergenic 45.0%
!!! GTTACACGGTTGGTCTTTTC+TGG + chr4_3:50336738-50336757 Msa0645350:intron 45.0%
CTGTTCCAACAAATTCACCG+TGG - chr4_3:50337187-50337206 None:intergenic 45.0%
!! CGGTGAATTTGTTGGAACAG+TGG + chr4_3:50337187-50337206 Msa0645350:intron 45.0%
CGTTGCTACCAACAATGGAT+TGG + chr4_3:50337323-50337342 Msa0645350:intron 45.0%
ACTTGAGACCCTTAAGCATG+TGG + chr4_3:50337361-50337380 Msa0645350:intron 45.0%
ACCCTTAAGCATGTGGTTAG+AGG + chr4_3:50337368-50337387 Msa0645350:intron 45.0%
ACTGTCACTAATCTCCATCG+TGG - chr4_3:50337468-50337487 None:intergenic 45.0%
GGCTTATAAATGTGACCGGA+GGG - chr4_3:50337575-50337594 None:intergenic 45.0%
TGGCTTATAAATGTGACCGG+AGG - chr4_3:50337576-50337595 None:intergenic 45.0%
CCGTGTCCATGTATAGATCA+AGG - chr4_3:50338096-50338115 None:intergenic 45.0%
TTTCAGCTTCAAGGAGCAGT+AGG + chr4_3:50338440-50338459 Msa0645350:intron 45.0%
ACGGATTTGTGTCGTATCCA+TGG + chr4_3:50338497-50338516 Msa0645350:CDS 45.0%
CGGATTTGTGTCGTATCCAT+GGG + chr4_3:50338498-50338517 Msa0645350:CDS 45.0%
TGCTTCTCGCTACAATGATG+TGG + chr4_3:50338606-50338625 Msa0645350:CDS 45.0%
ATTAAGCCATGCGTTTGCTC+GGG - chr4_3:50338644-50338663 None:intergenic 45.0%
CATTAAGCCATGCGTTTGCT+CGG - chr4_3:50338645-50338664 None:intergenic 45.0%
CTTAATGCAGCTCAAGCTTC+AGG + chr4_3:50338658-50338677 Msa0645350:CDS 45.0%
TAATGCAGCTCAAGCTTCAG+GGG + chr4_3:50338660-50338679 Msa0645350:CDS 45.0%
CTTCTTCCACGGTAAATGCA+GGG + chr4_3:50338880-50338899 Msa0645350:CDS 45.0%
TAATGACCCTGCATTTACCG+TGG - chr4_3:50338889-50338908 None:intergenic 45.0%
TCGACTATGGTATGCTCCAA+TGG + chr4_3:50338992-50339011 Msa0645350:CDS 45.0%
CGACTATGGTATGCTCCAAT+GGG + chr4_3:50338993-50339012 Msa0645350:CDS 45.0%
ATTGAGAACTCTCCTCCCAT+TGG - chr4_3:50339011-50339030 None:intergenic 45.0%
TGCCATTAGTCGTACAGAAG+AGG + chr4_3:50339070-50339089 Msa0645350:CDS 45.0%
ATTGCTTAGTCCTGAACGTG+TGG - chr4_3:50339344-50339363 None:intergenic 45.0%
TCAAAGAGTCCTTCCATGGA+TGG + chr4_3:50339420-50339439 Msa0645350:CDS 45.0%
CCATGGATGGTTTCATCAAC+CGG + chr4_3:50339433-50339452 Msa0645350:CDS 45.0%
GTCGTAACAACGAATTGCTC+CGG - chr4_3:50339455-50339474 None:intergenic 45.0%
GTCGATGTAAGGAGAGTTTC+TGG - chr4_3:50339492-50339511 None:intergenic 45.0%
TGTGCCAATTGAACTTGAGG+TGG - chr4_3:50339625-50339644 None:intergenic 45.0%
TGGAGGACAATGAGAAATCC+TGG - chr4_3:50339777-50339796 None:intergenic 45.0%
!! TATTCATACCCAGTTGGTGG+AGG - chr4_3:50339794-50339813 None:intergenic 45.0%
CGCTGCGAACCTTTATATTG+TGG + chr4_3:50339843-50339862 Msa0645350:three_prime_UTR 45.0%
TCATGCACAAGCTATCACCT+TGG + chr4_3:50339958-50339977 Msa0645350:three_prime_UTR 45.0%
!!! AATTTTTATTTAATTTTTCT+TGG + chr4_3:50336816-50336835 Msa0645350:intron 5.0%
AGAAGGAGAAAGTGAGTGGG+TGG - chr4_3:50335275-50335294 None:intergenic 50.0%
GCAGCTCAAAATCCGACGAA+TGG + chr4_3:50335446-50335465 Msa0645350:CDS 50.0%
ACCGGAGACATGCTTCAAAC+CGG + chr4_3:50335469-50335488 Msa0645350:CDS 50.0%
!! ACCGGTTTGAAGCATGTCTC+CGG - chr4_3:50335473-50335492 None:intergenic 50.0%
GCTGAGTGCTTTCAACTCCA+AGG + chr4_3:50335763-50335782 Msa0645350:CDS 50.0%
GTGGTTAGAGGTTGGATTCC+TGG + chr4_3:50337380-50337399 Msa0645350:intron 50.0%
GGATTCCTGGCTCATGCATA+TGG + chr4_3:50337393-50337412 Msa0645350:intron 50.0%
GTGGATTCTCTCCTCCAAAC+TGG - chr4_3:50337426-50337445 None:intergenic 50.0%
GTGCCCAACAAATTCCACGA+TGG + chr4_3:50337451-50337470 Msa0645350:intron 50.0%
TAGTGACAGTTAAGCGGCGA+TGG + chr4_3:50337478-50337497 Msa0645350:intron 50.0%
ACCTACCTTGATACTCCCTC+CGG + chr4_3:50337557-50337576 Msa0645350:intron 50.0%
AGCTTCAAGGAGCAGTAGGA+TGG + chr4_3:50338444-50338463 Msa0645350:intron 50.0%
TTGTGTCGTATCCATGGGAG+AGG + chr4_3:50338503-50338522 Msa0645350:CDS 50.0%
TGGAGAGACAGCTTCTTCCA+CGG + chr4_3:50338869-50338888 Msa0645350:CDS 50.0%
GCTTCTTCCACGGTAAATGC+AGG + chr4_3:50338879-50338898 Msa0645350:CDS 50.0%
CTATGGTATGCTCCAATGGG+AGG + chr4_3:50338996-50339015 Msa0645350:CDS 50.0%
!! ATCGGTGTCAGTGCTGTGTT+AGG - chr4_3:50339153-50339172 None:intergenic 50.0%
!! CCGGTTGATGAAACCATCCA+TGG - chr4_3:50339436-50339455 None:intergenic 50.0%
GGTCCCAAAGGAAGACATGT+AGG - chr4_3:50339534-50339553 None:intergenic 50.0%
!! CTTCCTTTGGGACCGAACAA+TGG + chr4_3:50339540-50339559 Msa0645350:CDS 50.0%
TAGCCATTGTTCGGTCCCAA+AGG - chr4_3:50339546-50339565 None:intergenic 50.0%
!! GGTGGTAATGGCAACACAGA+GGG - chr4_3:50339607-50339626 None:intergenic 50.0%
!! AGGTGGTAATGGCAACACAG+AGG - chr4_3:50339608-50339627 None:intergenic 50.0%
CGGTGTGCCAATTGAACTTG+AGG - chr4_3:50339628-50339647 None:intergenic 50.0%
!! ATCTTGAGAGAGGTGCCGTT+GGG + chr4_3:50339734-50339753 Msa0645350:CDS 50.0%
TCTCATTGTCCTCCACCAAC+TGG + chr4_3:50339782-50339801 Msa0645350:CDS 50.0%
CTCATTGTCCTCCACCAACT+GGG + chr4_3:50339783-50339802 Msa0645350:CDS 50.0%
TAAAGGTTCGCAGCGTATCC+CGG - chr4_3:50339838-50339857 None:intergenic 50.0%
CATGTCTCCGGTCCATTCGT+CGG - chr4_3:50335461-50335480 None:intergenic 55.0%
ACAAGTACGGCTACAGCGAC+AGG + chr4_3:50336862-50336881 Msa0645350:intron 55.0%
!! ACCGGAGGGAGTATCAAGGT+AGG - chr4_3:50337561-50337580 None:intergenic 55.0%
!! TGTGACCGGAGGGAGTATCA+AGG - chr4_3:50337565-50337584 None:intergenic 55.0%
GAGTAGGCGTGAGTCAGTGT+CGG - chr4_3:50338218-50338237 None:intergenic 55.0%
GCACATGTTCTCCTCGGAGT+AGG - chr4_3:50338234-50338253 None:intergenic 55.0%
ATCGCGCTCGTGTGTATCGA+AGG - chr4_3:50338332-50338351 None:intergenic 55.0%
TGTCGTATCCATGGGAGAGG+AGG + chr4_3:50338506-50338525 Msa0645350:CDS 55.0%
AGTTTACCGGCCACACGTTC+AGG + chr4_3:50339331-50339350 Msa0645350:CDS 55.0%
CTTAGTCCTGAACGTGTGGC+CGG - chr4_3:50339340-50339359 None:intergenic 55.0%
CACAGAGGGAGACAAGGGTT+TGG - chr4_3:50339593-50339612 None:intergenic 55.0%
GGCAACACAGAGGGAGACAA+GGG - chr4_3:50339598-50339617 None:intergenic 55.0%
TGGCAACACAGAGGGAGACA+AGG - chr4_3:50339599-50339618 None:intergenic 55.0%
GCACCTCTCTCAAGATGCGT+CGG - chr4_3:50339730-50339749 None:intergenic 55.0%
!! CATCTTGAGAGAGGTGCCGT+TGG + chr4_3:50339733-50339752 Msa0645350:CDS 55.0%
!! TCTTGAGAGAGGTGCCGTTG+GGG + chr4_3:50339735-50339754 Msa0645350:CDS 55.0%
GTCACGAGAGGGTGAGTCTG+AGG - chr4_3:50335395-50335414 None:intergenic 60.0%
! ACTGACTCACGCCTACTCCG+AGG + chr4_3:50338220-50338239 Msa0645350:intron 60.0%
TCCATGGGAGAGGAGGATGC+AGG + chr4_3:50338513-50338532 Msa0645350:CDS 60.0%
TCCTGCATCCTCCTCTCCCA+TGG - chr4_3:50338517-50338536 None:intergenic 60.0%
CACTAGCCCGAGCAAACGCA+TGG + chr4_3:50338635-50338654 Msa0645350:CDS 60.0%
CAGCCGACGCATCTTGAGAG+AGG + chr4_3:50339724-50339743 Msa0645350:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 50335269 50340358 50335269 ID=Msa0645350;Name=Msa0645350
chr4_3 mRNA 50335269 50340358 50335269 ID=Msa0645350-mRNA-1;Parent=Msa0645350;Name=Msa0645350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=83|1|1|1|1|1|4|548|489
chr4_3 exon 50335269 50335784 50335269 ID=Msa0645350-mRNA-1:exon:11977;Parent=Msa0645350-mRNA-1
chr4_3 exon 50338446 50338729 50338446 ID=Msa0645350-mRNA-1:exon:11978;Parent=Msa0645350-mRNA-1
chr4_3 exon 50338864 50339091 50338864 ID=Msa0645350-mRNA-1:exon:11979;Parent=Msa0645350-mRNA-1
chr4_3 exon 50339286 50340358 50339286 ID=Msa0645350-mRNA-1:exon:11980;Parent=Msa0645350-mRNA-1
chr4_3 five_prime_UTR 50335269 50335351 50335269 ID=Msa0645350-mRNA-1:five_prime_utr;Parent=Msa0645350-mRNA-1
chr4_3 CDS 50335352 50335784 50335352 ID=Msa0645350-mRNA-1:cds;Parent=Msa0645350-mRNA-1
chr4_3 CDS 50338446 50338729 50338446 ID=Msa0645350-mRNA-1:cds;Parent=Msa0645350-mRNA-1
chr4_3 CDS 50338864 50339091 50338864 ID=Msa0645350-mRNA-1:cds;Parent=Msa0645350-mRNA-1
chr4_3 CDS 50339286 50339810 50339286 ID=Msa0645350-mRNA-1:cds;Parent=Msa0645350-mRNA-1
chr4_3 three_prime_UTR 50339811 50340358 50339811 ID=Msa0645350-mRNA-1:three_prime_utr;Parent=Msa0645350-mRNA-1
Gene Sequence

>Msa0645350

ATGACCATGGACCGATCATCATCACAAAGCAGCTCAAAATCCTCAGACTCACCCTCTCGTGACTTCAAAGTCCTATCCATAGAATGCTACAAAGGCAGCTCAAAATCCGACGAATGGACCGGAGACATGCTTCAAACCGGTGACATAGTTGAAGAGTTTCGAGTTGGTGGTTCAGCTAACTCATTGATAAGGTTCAAAGCACCTTTCAAGAATGGAAAAAATGGTGTAAATAAGATTCTTCAAGAAGCTTATAAGAAGAAAGATACTTCTATACTTGTAAGAGTACGTAGAGGAGTTGATGAGTTTGCTGAGTTGCAAGGTTGTATTGTTCCTAATGAGAATAAGAAGAGTTATGTTCTTAGAGATATTGTTGATCCTAATTATCTTGTTGGGTTTTTGGATCGAACTGAAGCTGAGTGCTTTCAACTCCAAGCTTCAAGGAGCAGTAGGATGGTGAATGAGTTAACAAAAACCCGAATACAAGACGGATTTGTGTCGTATCCATGGGAGAGGAGGATGCAGGAGTTGTTATCAGTTCCAAATTCTAGCAACTTTCTTTCCATATTACTTCTTCCCAAAGCTTCAGATAGAGTTGCTTCTCGCTACAATGATGTGGAAGACACACTAGCCCGAGCAAACGCATGGCTTAATGCAGCTCAAGCTTCAGGGGTCCCTATTGTCTTTATGAACATTCAAACCGAGTCCTTACTTACAAAGATATCTGGAGAGACAGCTTCTTCCACGGTAAATGCAGGGTCATTATCCGACTTATGCAACATTGCAAATGCAAGTCTTTATGGTTTCGAAGATTATCACGGAGTAGACATTGGCGTTGTTAGAGCAATTCGACTATGGTATGCTCCAATGGGAGGAGAGTTCTCAATAGAGATAAAACTTAGAGAGGAAGATACAAAGCTCGGCTTTGCCATTAGTCGTACAGAAGAGGGTTTTATATTCATCTCATCATCAGTAATTGACGAAGGTAAAGAAAGTTTACCGGCCACACGTTCAGGACTAAGCAATCTATACAAACTAGCAACAGAAACTTCAAGGTTATTGGTAGTTTCAAGGCTTTCAAATCAAAGAGTCCTTCCATGGATGGTTTCATCAACCGGAGCAATTCGTTGTTACGACACTGTTTCATTGAGCCAGAAACTCTCCTTACATCGACACACTAAAGTTCCTATTCTCCTACATGTCTTCCTTTGGGACCGAACAATGGCTACTTCAAGTGCAGAAAGTACAAAATCCAAACCCTTGTCTCCCTCTGTGTTGCCATTACCACCTCAAGTTCAATTGGCACACCGTCCTAATGAGAACCAAATACAGCCATTATCATGTGAAGGATCTAATCCAACTGATATCAATATCAGTGATAGTTCTCAGCCGACGCATCTTGAGAGAGGTGCCGTTGGGGATGTCTCATTCAGATTCCAGGATTTCTCATTGTCCTCCACCAACTGGGTATGA
Protein sequence

>Msa0645350

MTMDRSSSQSSSKSSDSPSRDFKVLSIECYKGSSKSDEWTGDMLQTGDIVEEFRVGGSANSLIRFKAPFKNGKNGVNKILQEAYKKKDTSILVRVRRGVDEFAELQGCIVPNENKKSYVLRDIVDPNYLVGFLDRTEAECFQLQASRSSRMVNELTKTRIQDGFVSYPWERRMQELLSVPNSSNFLSILLLPKASDRVASRYNDVEDTLARANAWLNAAQASGVPIVFMNIQTESLLTKISGETASSTVNAGSLSDLCNIANASLYGFEDYHGVDIGVVRAIRLWYAPMGGEFSIEIKLREEDTKLGFAISRTEEGFIFISSSVIDEGKESLPATRSGLSNLYKLATETSRLLVVSRLSNQRVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTKVPILLHVFLWDRTMATSSAESTKSKPLSPSVLPLPPQVQLAHRPNENQIQPLSCEGSNPTDINISDSSQPTHLERGAVGDVSFRFQDFSLSSTNWV*