AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604180 MtrunA17_Chr4g0033191 88.968 281 9 1 1 281 1 259 0.0 516
Msa0604180 MtrunA17_Chr4g0033201 77.224 281 35 3 1 281 1 252 2.77e-156 445
Msa0604180 MtrunA17_Chr4g0033271 71.631 282 48 4 1 281 1 251 8.78e-140 403
Msa0604180 MtrunA17_Chr4g0033311 62.007 279 81 2 3 281 2 255 2.01e-125 367
Msa0604180 MtrunA17_Chr4g0033321 64.815 270 70 3 13 281 4 249 8.21e-125 365
Msa0604180 MtrunA17_Chr4g0033331 70.711 239 48 1 43 281 39 255 4.83e-124 363
Msa0604180 MtrunA17_Chr4g0033401 62.633 281 74 3 1 281 1 250 1.51e-123 362
Msa0604180 MtrunA17_Chr6g0482131 65.019 263 69 2 20 281 12 252 7.32e-123 360
Msa0604180 MtrunA17_Chr6g0482081 64.000 275 74 3 8 281 2 252 9.94e-123 360
Msa0604180 MtrunA17_Chr3g0088441 60.507 276 85 2 6 281 3 254 1.83e-121 357
Msa0604180 MtrunA17_Chr6g0482071 60.870 276 82 2 6 281 4 253 8.04e-117 345
Msa0604180 MtrunA17_Chr2g0329201 59.124 274 83 2 8 281 3 247 5.58e-116 342
Msa0604180 MtrunA17_Chr4g0033341 59.058 276 83 4 6 281 37 282 8.04e-115 340
Msa0604180 MtrunA17_Chr2g0329191 63.374 243 66 2 39 281 30 249 1.56e-112 333
Msa0604180 MtrunA17_Chr4g0010501 57.741 239 78 2 43 281 24 239 1.90e-96 292
Msa0604180 MtrunA17_Chr2g0329321 52.536 276 76 3 6 281 8 228 2.43e-95 289
Msa0604180 MtrunA17_Chr4g0033261 52.669 281 80 5 3 281 2 231 2.11e-94 287
Msa0604180 MtrunA17_Chr3g0087261 51.661 271 103 5 11 281 8 250 1.59e-93 285
Msa0604180 MtrunA17_Chr3g0087271 51.648 273 103 5 10 281 7 251 1.68e-92 282
Msa0604180 MtrunA17_Chr5g0430451 53.358 268 76 3 6 273 3 221 8.54e-92 280
Msa0604180 MtrunA17_Chr4g0033231 51.894 264 76 3 18 281 19 231 1.18e-90 277
Msa0604180 MtrunA17_Chr4g0043091 53.527 241 87 3 41 281 26 241 8.85e-86 265
Msa0604180 MtrunA17_Chr5g0418871 59.091 198 78 2 84 281 2 196 7.19e-81 247
Msa0604180 MtrunA17_Chr6g0482941 47.253 273 115 6 9 281 12 255 1.64e-77 244
Msa0604180 MtrunA17_Chr6g0482951 46.520 273 117 6 9 281 12 255 9.82e-77 242
Msa0604180 MtrunA17_Chr4g0042171 51.464 239 91 3 43 281 24 237 1.85e-76 241
Msa0604180 MtrunA17_Chr4g0006111 55.779 199 65 2 39 237 61 236 1.90e-76 241
Msa0604180 MtrunA17_Chr7g0242691 48.536 239 98 3 43 281 31 244 4.60e-76 240
Msa0604180 MtrunA17_Chr4g0006971 49.789 237 94 3 45 281 29 240 8.57e-76 239
Msa0604180 MtrunA17_Chr3g0087191 63.095 168 40 1 41 208 20 165 2.86e-75 227
Msa0604180 MtrunA17_Chr4g0006131 48.810 252 81 4 30 281 29 232 3.15e-75 238
Msa0604180 MtrunA17_Chr7g0242681 49.372 239 96 3 43 281 38 251 7.79e-75 237
Msa0604180 MtrunA17_Chr1g0195641 50.000 238 91 4 45 281 29 239 3.41e-73 230
Msa0604180 MtrunA17_Chr1g0195611 49.793 241 93 4 42 281 26 239 7.53e-73 232
Msa0604180 MtrunA17_Chr5g0428831 48.963 241 95 4 42 281 26 239 8.57e-73 232
Msa0604180 MtrunA17_Chr2g0288071 46.715 274 106 5 8 281 48 281 1.79e-71 229
Msa0604180 MtrunA17_Chr4g0074561 49.787 235 94 3 48 281 40 251 4.86e-71 228
Msa0604180 MtrunA17_Chr2g0288021 43.796 274 117 6 8 281 12 248 6.90e-71 227
Msa0604180 MtrunA17_Chr2g0317821 46.640 253 106 5 33 281 18 245 1.14e-70 226
Msa0604180 MtrunA17_Chr2g0317841 45.059 253 110 5 33 281 18 245 1.91e-68 221
Msa0604180 MtrunA17_Chr3g0090131 45.882 255 98 5 27 281 11 225 8.00e-68 218
Msa0604180 MtrunA17_Chr4g0074551 48.718 234 95 4 48 281 55 263 1.52e-67 219
Msa0604180 MtrunA17_Chr3g0090111 47.280 239 92 4 43 281 19 223 1.63e-66 215
Msa0604180 MtrunA17_Chr2g0301231 64.912 114 36 1 133 242 1 114 3.57e-45 157
Msa0604180 MtrunA17_Chr7g0230651 42.353 170 92 1 112 281 18 181 9.52e-43 150
Msa0604180 MtrunA17_Chr7g0234111 39.749 239 107 4 44 281 76 278 1.32e-42 152
Msa0604180 MtrunA17_Chr7g0234091 39.834 241 104 6 44 281 76 278 2.38e-40 146
Msa0604180 MtrunA17_Chr7g0234131 38.912 239 109 4 44 281 76 278 4.35e-40 145
Msa0604180 MtrunA17_Chr7g0227561 30.824 279 131 7 9 281 7 229 6.85e-37 132
Msa0604180 MtrunA17_Chr3g0087201 60.274 73 29 0 209 281 17 89 1.69e-26 106
Msa0604180 MtrunA17_Chr7g0236731 43.411 129 66 2 154 281 28 150 5.64e-22 92.8
Msa0604180 MtrunA17_Chr4g0068871 30.070 143 95 3 129 268 183 323 1.63e-12 67.4
Msa0604180 MtrunA17_Chr2g0288031 46.552 58 30 1 217 274 4 60 5.37e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604180 AT5G42260.1 50.909 275 105 3 7 281 3 247 2.01e-98 298
Msa0604180 AT2G25630.1 51.648 273 101 3 9 281 5 246 3.69e-98 296
Msa0604180 AT5G44640.1 50.000 272 104 2 10 281 8 247 4.16e-98 297
Msa0604180 AT2G44480.4 54.724 254 89 3 28 281 54 281 1.41e-97 292
Msa0604180 AT2G44480.1 54.724 254 89 3 28 281 23 250 1.02e-95 291
Msa0604180 AT2G44480.3 54.724 254 89 3 28 281 54 281 1.50e-95 291
Msa0604180 AT2G44450.1 54.393 239 87 1 43 281 31 247 2.13e-95 290
Msa0604180 AT5G24550.1 52.060 267 104 3 16 281 4 247 8.50e-94 287
Msa0604180 AT3G60140.2 50.549 273 96 4 9 281 8 241 1.37e-92 281
Msa0604180 AT5G24540.2 52.124 259 100 3 17 274 5 240 4.01e-91 278
Msa0604180 AT3G60140.1 50.549 273 96 4 9 281 8 241 7.60e-91 280
Msa0604180 AT5G24540.1 51.923 260 101 3 16 274 4 240 4.96e-90 277
Msa0604180 AT2G44470.2 48.519 270 109 3 12 281 5 244 6.28e-90 273
Msa0604180 AT3G60130.1 52.720 239 91 1 43 281 30 246 7.30e-90 276
Msa0604180 AT2G44470.1 48.162 272 111 3 10 281 3 244 2.31e-89 273
Msa0604180 AT2G44460.1 49.811 265 103 3 10 274 3 237 1.71e-88 275
Msa0604180 AT2G44470.3 48.162 272 111 3 10 281 3 244 9.92e-88 273
Msa0604180 AT2G44490.1 53.165 237 89 1 45 281 16 230 4.14e-83 260
Msa0604180 AT1G47600.2 52.419 248 87 4 35 281 37 254 5.67e-82 256
Msa0604180 AT1G47600.1 52.419 248 87 4 35 281 37 254 5.82e-82 256
Msa0604180 AT3G03640.1 47.080 274 115 3 8 281 7 250 9.84e-82 256
Msa0604180 AT5G54570.3 53.975 239 86 2 43 281 30 244 1.02e-81 253
Msa0604180 AT5G25980.3 50.833 240 92 3 43 281 50 264 3.37e-81 252
Msa0604180 AT5G25980.1 50.833 240 92 3 43 281 50 264 3.37e-81 252
Msa0604180 AT2G32860.2 50.417 240 97 1 42 281 93 310 3.90e-81 256
Msa0604180 AT1G51470.1 51.613 248 89 4 35 281 37 254 3.94e-81 253
Msa0604180 AT1G26560.1 50.207 241 95 3 41 281 30 245 4.14e-81 253
Msa0604180 AT2G32860.1 50.417 240 97 1 42 281 93 310 5.72e-81 256
Msa0604180 AT3G60120.1 53.586 237 87 2 45 281 16 229 6.47e-81 254
Msa0604180 AT5G54570.1 53.975 239 86 2 43 281 30 244 9.27e-81 253
Msa0604180 AT5G25980.2 50.833 240 92 3 43 281 50 264 1.91e-80 253
Msa0604180 AT3G09260.1 49.791 239 97 2 43 281 35 250 2.56e-80 252
Msa0604180 AT5G26000.2 46.570 277 122 3 6 281 1 252 7.34e-79 246
Msa0604180 AT5G26000.1 46.570 277 122 3 6 281 1 252 3.83e-78 246
Msa0604180 AT1G66280.1 46.290 283 119 5 1 281 1 252 4.53e-78 246
Msa0604180 AT1G02850.3 50.420 238 91 3 44 281 27 237 1.07e-77 242
Msa0604180 AT1G75940.1 49.587 242 96 3 43 281 37 255 1.94e-77 244
Msa0604180 AT1G02850.1 50.420 238 91 3 44 281 27 237 5.68e-77 241
Msa0604180 AT1G02850.4 50.420 238 91 3 44 281 27 237 6.90e-77 243
Msa0604180 AT1G02850.5 50.420 238 91 3 44 281 27 237 7.82e-77 243
Msa0604180 AT1G02850.2 50.420 238 91 3 44 281 27 237 8.72e-77 242
Msa0604180 AT1G52400.2 46.071 280 121 5 6 281 4 257 1.17e-75 238
Msa0604180 AT3G18080.1 49.372 239 95 4 43 281 39 251 2.53e-75 238
Msa0604180 AT1G52400.3 46.071 280 121 5 6 281 4 257 6.01e-75 238
Msa0604180 AT1G52400.1 46.071 280 121 5 6 281 4 257 6.01e-75 238
Msa0604180 AT3G21370.1 47.107 242 102 3 43 281 33 251 1.06e-73 234
Msa0604180 AT5G28510.1 47.131 244 101 3 43 281 39 259 2.87e-73 234
Msa0604180 AT1G66270.1 48.760 242 100 3 41 281 34 252 3.85e-73 233
Msa0604180 AT1G51490.1 45.525 257 102 6 32 281 3 228 5.93e-71 224
Msa0604180 AT1G61820.1 50.855 234 91 3 48 281 35 244 7.01e-71 227
Msa0604180 AT1G60090.1 46.444 239 98 4 43 281 24 232 7.91e-71 227
Msa0604180 AT1G60090.2 46.444 239 98 4 43 281 24 232 9.15e-71 226
Msa0604180 AT1G66270.2 48.347 242 99 4 41 281 34 250 4.78e-70 225
Msa0604180 AT4G27830.1 43.145 248 115 3 34 281 14 235 5.71e-70 224
Msa0604180 AT1G60270.1 46.862 239 98 4 43 281 24 233 2.29e-69 219
Msa0604180 AT3G18070.4 46.444 239 100 5 43 281 30 240 7.46e-69 218
Msa0604180 AT3G18070.3 46.444 239 94 5 43 281 30 234 1.64e-68 220
Msa0604180 AT4G27820.1 43.096 239 107 3 43 281 23 232 7.69e-68 219
Msa0604180 AT1G61810.2 41.544 272 131 4 10 281 4 247 2.03e-67 212
Msa0604180 AT3G18070.1 46.444 239 100 5 43 281 30 240 3.74e-67 217
Msa0604180 AT5G36890.2 48.594 249 94 4 33 281 6 220 8.75e-67 216
Msa0604180 AT4G22100.1 44.538 238 102 4 44 281 23 230 1.01e-66 216
Msa0604180 AT5G36890.1 48.594 249 94 4 33 281 6 220 1.03e-66 216
Msa0604180 AT1G61810.4 41.544 272 131 4 10 281 4 247 1.07e-65 211
Msa0604180 AT2G44480.2 61.074 149 57 1 133 281 1 148 1.59e-65 210
Msa0604180 AT1G61810.3 41.544 272 131 4 10 281 4 247 1.30e-64 211
Msa0604180 AT1G61810.1 41.544 272 131 4 10 281 4 247 1.39e-64 211
Msa0604180 AT3G60130.3 55.484 155 69 0 127 281 40 194 3.84e-63 205
Msa0604180 AT3G60130.2 55.484 155 69 0 127 281 40 194 6.92e-63 205
Msa0604180 AT1G45191.5 43.388 242 106 5 41 281 26 237 1.49e-62 202
Msa0604180 AT1G45191.3 43.388 242 106 5 41 281 26 237 2.03e-62 202
Msa0604180 AT1G45191.2 43.388 242 106 5 41 281 26 237 1.63e-61 202
Msa0604180 AT1G45191.4 43.388 242 106 5 41 281 26 237 1.97e-61 202
Msa0604180 AT1G45191.6 43.388 242 106 5 41 281 26 237 2.28e-61 202
Msa0604180 AT4G21760.1 44.444 234 105 4 48 281 59 267 3.08e-60 200
Msa0604180 AT4G21760.2 44.444 234 105 4 48 281 59 267 3.99e-60 200
Msa0604180 AT3G62750.7 41.250 240 101 6 43 281 23 223 5.52e-59 192
Msa0604180 AT3G62750.8 41.250 240 101 6 43 281 23 223 5.52e-59 192
Msa0604180 AT1G45191.1 42.169 249 111 6 41 281 26 249 7.76e-59 196
Msa0604180 AT3G62750.3 41.250 240 101 6 43 281 49 249 2.34e-58 192
Msa0604180 AT5G48375.1 43.231 229 98 4 62 281 15 220 8.09e-58 191
Msa0604180 AT3G62750.4 41.250 240 101 6 43 281 49 249 1.36e-57 191
Msa0604180 AT3G62750.1 41.250 240 101 6 43 281 23 223 2.04e-57 191
Msa0604180 AT3G62750.2 41.250 240 101 6 43 281 49 249 3.63e-57 191
Msa0604180 AT5G54570.2 59.732 149 58 1 133 281 1 147 4.04e-56 187
Msa0604180 AT3G62740.2 37.091 275 122 8 9 281 4 229 2.13e-55 184
Msa0604180 AT3G62740.1 37.091 275 122 8 9 281 4 229 1.17e-54 184
Msa0604180 AT4G27830.2 46.980 149 77 1 133 281 1 147 1.66e-46 161
Msa0604180 AT1G60270.2 52.381 147 67 2 135 281 3 146 3.09e-46 157
Msa0604180 AT4G27820.2 45.638 149 79 1 133 281 1 147 7.63e-45 157
Msa0604180 AT4G27820.3 45.638 149 79 1 133 281 1 147 7.63e-45 157
Msa0604180 AT1G61810.5 48.630 146 73 2 136 281 4 147 4.67e-42 149
Msa0604180 AT2G44450.2 60.417 96 38 0 186 281 1 96 2.23e-37 135
Msa0604180 AT3G62750.6 43.333 150 72 4 133 281 1 138 1.76e-36 134
Msa0604180 AT3G62750.5 43.333 150 72 4 133 281 1 138 1.76e-36 134
Msa0604180 AT2G44460.2 59.341 91 37 0 184 274 1 91 5.91e-35 130
Msa0604180 AT1G61820.3 51.456 103 49 1 179 281 4 105 1.11e-26 107
Msa0604180 AT3G18070.5 53.846 65 29 1 217 281 100 163 1.13e-15 76.3
Msa0604180 AT3G18070.5 40.000 85 28 2 43 127 30 91 6.72e-11 62.4
Msa0604180 AT3G18070.2 53.846 65 29 1 217 281 100 163 2.11e-15 76.3
Msa0604180 AT3G18070.2 40.000 85 28 2 43 127 30 91 6.82e-11 62.8
Msa0604180 AT3G06510.2 28.025 157 107 4 128 281 159 312 1.13e-14 74.3
Msa0604180 AT3G06510.1 28.025 157 107 4 128 281 159 312 1.18e-14 74.3

Find 61 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGCTTCTTCTGCATTTC+AGG 0.143961 4_2:-49397447 Msa0604180:CDS
ATGGAAAAGGACCAAGTATT+TGG 0.197865 4_2:-49397274 Msa0604180:CDS
GACCTTTGCTACAAGGAATT+TGG 0.235205 4_2:-49395987 Msa0604180:CDS
AACAATGGTGGTGGCAATAA+TGG 0.285072 4_2:+49397565 None:intergenic
AATCATAAAGGATTTGAATA+TGG 0.307459 4_2:-49396512 Msa0604180:CDS
AATTGCACAGGAGGTGATTC+GGG 0.327589 4_2:-49395855 Msa0604180:CDS
CAACCTCATCGATGAACTAT+TGG 0.343604 4_2:-49396315 Msa0604180:CDS
GGATGTTCCTCAAGCCTTAG+AGG 0.346709 4_2:-49396174 Msa0604180:CDS
TATGTATTTCAGGAAGATAT+TGG 0.369128 4_2:-49396535 Msa0604180:intron
GCTACAAGGAATTTGGTGAT+AGG 0.371977 4_2:-49395980 Msa0604180:CDS
AACAAAGCCTGGCGGGAAAC+AGG 0.373667 4_2:+49397475 None:intergenic
CACCGGGTCGATGTTCTGAT+TGG 0.383994 4_2:-49395887 Msa0604180:CDS
AAAATAAGAGATGGAGGTAA+TGG 0.386283 4_2:-49396660 Msa0604180:CDS
GGAAGATATTGGAATCATAA+AGG 0.386661 4_2:-49396524 Msa0604180:CDS
GAATTGCACAGGAGGTGATT+CGG 0.391598 4_2:-49395856 Msa0604180:CDS
TGGAAAAGGACCAAGTATTT+GGG 0.404129 4_2:-49397273 Msa0604180:CDS
TGTAGTAGTTTATTCCTTCA+CGG 0.418155 4_2:+49396339 None:intergenic
ATCGATGAACTATTGGCTAA+TGG 0.430523 4_2:-49396308 Msa0604180:intron
GATCGGAAAAGTCGCGAAGA+TGG 0.446253 4_2:+49397507 None:intergenic
TTTGCAGAAGGAAAGCTTAG+TGG 0.446993 4_2:-49396371 Msa0604180:intron
AATCGGACCTGTTTCCCGCC+AGG 0.464039 4_2:-49397482 Msa0604180:CDS
CTACAAGGAATTTGGTGATA+GGG 0.466831 4_2:-49395979 Msa0604180:CDS
ACCGTCATACTCATCCTCTA+AGG 0.470920 4_2:+49396160 None:intergenic
AGCATGAATGCTTATGCATA+TGG 0.485187 4_2:-49395918 Msa0604180:CDS
TTCCGAAAACAAAGCCTGGC+GGG 0.497302 4_2:+49397468 None:intergenic
CTATGCTGACCTTTGCTACA+AGG 0.508555 4_2:-49395994 Msa0604180:CDS
TGGTAGTGCGCAGTCAAATA+CGG 0.513115 4_2:+49395825 None:intergenic
CACCAAATTCCTTGTAGCAA+AGG 0.520911 4_2:+49395985 None:intergenic
TGGTTAAATCTGAATTGCAC+AGG 0.528273 4_2:-49395867 Msa0604180:CDS
TTGGTGATAGGGTGAAACAT+TGG 0.532663 4_2:-49395968 Msa0604180:CDS
TGCATATGGAAAGTTTGCAC+CGG 0.533544 4_2:-49395904 Msa0604180:CDS
GCAGCATTTGAAGATGGAAA+AGG 0.538475 4_2:-49397287 Msa0604180:CDS
GCTGTTCCGAAAACAAAGCC+TGG 0.539523 4_2:+49397464 None:intergenic
CAATGGAAAAGAGTCACATA+TGG 0.551613 4_2:+49396197 None:intergenic
GTGAAAGTATCCCAAATACT+TGG 0.559968 4_2:+49397263 None:intergenic
CGAAGATGGAGTAGTGAAGA+AGG 0.570282 4_2:+49397521 None:intergenic
CGACGCATATCATCGGTACA+AGG 0.572001 4_2:-49396625 Msa0604180:intron
GCATTCATGCTCACACTCCA+TGG 0.576199 4_2:+49395930 None:intergenic
GAAACAGGTCCGATTGAGAT+CGG 0.577440 4_2:+49397490 None:intergenic
GAAGGTGCAGCATTTGAAGA+TGG 0.577839 4_2:-49397293 Msa0604180:CDS
AGCATTGATATGAGTAACAA+TGG 0.584246 4_2:+49397550 None:intergenic
GCATATGGAAAGTTTGCACC+GGG 0.592559 4_2:-49395903 Msa0604180:CDS
TACTCATCCTCTAAGGCTTG+AGG 0.594134 4_2:+49396167 None:intergenic
TAGCCGACGACGCATATCAT+CGG 0.598194 4_2:-49396632 Msa0604180:CDS
GGATTACTTTGAATGAACCA+TGG 0.603853 4_2:-49395947 Msa0604180:CDS
GGTGTCACTCACACAATCCG+AGG 0.616673 4_2:+49396128 None:intergenic
GCCTTAGAGGATGAGTATGA+CGG 0.628770 4_2:-49396161 Msa0604180:CDS
AACCAATCAGAACATCGACC+CGG 0.630892 4_2:+49395885 None:intergenic
GCAGAAGGAAAGCTTAGTGG+AGG 0.637778 4_2:-49396368 Msa0604180:intron
AGGCTTGAGGAACATCCCAA+TGG 0.638059 4_2:+49396180 None:intergenic
AGTGGAGGTGTAAACCGTGA+AGG 0.641058 4_2:-49396353 Msa0604180:CDS
GATATGAGTAACAATGGTGG+TGG 0.648893 4_2:+49397556 None:intergenic
TAGCCAATAGTTCATCGATG+AGG 0.658542 4_2:+49396312 None:intergenic
TAGCACTCTAGACCAAGCAA+TGG 0.660595 4_2:+49396474 None:intergenic
GTGTCACTCACACAATCCGA+GGG 0.662250 4_2:+49396129 None:intergenic
TTAAATCTGAATTGCACAGG+AGG 0.663041 4_2:-49395864 Msa0604180:CDS
GTACCGATGATATGCGTCGT+CGG 0.669538 4_2:+49396629 None:intergenic
ATTGCACAGGAGGTGATTCG+GGG 0.685472 4_2:-49395854 Msa0604180:CDS
ACTTTCACTCATGAACACCC+AGG 0.690909 4_2:-49397248 Msa0604180:intron
GTTCCGAAAACAAAGCCTGG+CGG 0.701608 4_2:+49397467 None:intergenic
ATTGATATGAGTAACAATGG+TGG 0.751794 4_2:+49397553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATATCATGTTTTTTT+TGG - chr4_2:49396239-49396258 Msa0604180:intron 10.0%
!!! TACTATTTTTTTTTTTGAAA+AGG + chr4_2:49396524-49396543 None:intergenic 10.0%
!!! TATTAATATCATGTTTTTTT+TGG - chr4_2:49396239-49396258 Msa0604180:intron 10.0%
!!! TACTATTTTTTTTTTTGAAA+AGG + chr4_2:49396524-49396543 None:intergenic 10.0%
!! TCTCATATATATTAATGATA+TGG - chr4_2:49396731-49396750 Msa0604180:intron 15.0%
!! TCTCATATATATTAATGATA+TGG - chr4_2:49396731-49396750 Msa0604180:intron 15.0%
!!! TTAAAAATTTTGTAGTACGA+AGG - chr4_2:49396112-49396131 Msa0604180:intron 20.0%
!! GAAGTAATTAAAAATAACCT+GGG + chr4_2:49396195-49396214 None:intergenic 20.0%
!! AGAAGTAATTAAAAATAACC+TGG + chr4_2:49396196-49396215 None:intergenic 20.0%
!! AATCATAAAGGATTTGAATA+TGG - chr4_2:49396911-49396930 Msa0604180:intron 20.0%
!! TTACAAAAATATGACTTACT+TGG + chr4_2:49396975-49396994 None:intergenic 20.0%
!! ACTATATCACAAATGTATAA+GGG + chr4_2:49397006-49397025 None:intergenic 20.0%
!! TACTATATCACAAATGTATA+AGG + chr4_2:49397007-49397026 None:intergenic 20.0%
!! CTATTTATCTATGACTATTT+AGG - chr4_2:49397334-49397353 Msa0604180:intron 20.0%
!!! TTAAAAATTTTGTAGTACGA+AGG - chr4_2:49396112-49396131 Msa0604180:intron 20.0%
!! GAAGTAATTAAAAATAACCT+GGG + chr4_2:49396195-49396214 None:intergenic 20.0%
!! AGAAGTAATTAAAAATAACC+TGG + chr4_2:49396196-49396215 None:intergenic 20.0%
!! AATCATAAAGGATTTGAATA+TGG - chr4_2:49396911-49396930 Msa0604180:intron 20.0%
!! TTACAAAAATATGACTTACT+TGG + chr4_2:49396975-49396994 None:intergenic 20.0%
!! ACTATATCACAAATGTATAA+GGG + chr4_2:49397006-49397025 None:intergenic 20.0%
!! TACTATATCACAAATGTATA+AGG + chr4_2:49397007-49397026 None:intergenic 20.0%
!! CTATTTATCTATGACTATTT+AGG - chr4_2:49397334-49397353 Msa0604180:intron 20.0%
!!! TCATGTTTTTTTTGGTAACA+TGG - chr4_2:49396247-49396266 Msa0604180:intron 25.0%
!!! CATGTTTTTTTTGGTAACAT+GGG - chr4_2:49396248-49396267 Msa0604180:intron 25.0%
! TAAATCGTTAGATTAAGAGA+GGG - chr4_2:49396342-49396361 Msa0604180:CDS 25.0%
! GAAACTCTATCTCAATATAA+CGG - chr4_2:49396364-49396383 Msa0604180:CDS 25.0%
! AAATGTTGCACTAAATTGAA+TGG + chr4_2:49396500-49396519 None:intergenic 25.0%
!! CTTTTCCTTAATGATGTATT+TGG - chr4_2:49396577-49396596 Msa0604180:intron 25.0%
! TATGTATTTCAGGAAGATAT+TGG - chr4_2:49396888-49396907 Msa0604180:intron 25.0%
! AATAGCTCAAGATTGAAAAT+TGG + chr4_2:49397319-49397338 None:intergenic 25.0%
!!! TCATGTTTTTTTTGGTAACA+TGG - chr4_2:49396247-49396266 Msa0604180:intron 25.0%
!!! CATGTTTTTTTTGGTAACAT+GGG - chr4_2:49396248-49396267 Msa0604180:intron 25.0%
! TAAATCGTTAGATTAAGAGA+GGG - chr4_2:49396342-49396361 Msa0604180:CDS 25.0%
! GAAACTCTATCTCAATATAA+CGG - chr4_2:49396364-49396383 Msa0604180:CDS 25.0%
! AAATGTTGCACTAAATTGAA+TGG + chr4_2:49396500-49396519 None:intergenic 25.0%
!! CTTTTCCTTAATGATGTATT+TGG - chr4_2:49396577-49396596 Msa0604180:intron 25.0%
! TATGTATTTCAGGAAGATAT+TGG - chr4_2:49396888-49396907 Msa0604180:intron 25.0%
! AATAGCTCAAGATTGAAAAT+TGG + chr4_2:49397319-49397338 None:intergenic 25.0%
ATTGATATGAGTAACAATGG+TGG + chr4_2:49395873-49395892 None:intergenic 30.0%
!! AGCATTGATATGAGTAACAA+TGG + chr4_2:49395876-49395895 None:intergenic 30.0%
ATATTATTTGGACATGTTGC+AGG + chr4_2:49396280-49396299 None:intergenic 30.0%
GTAAATCGTTAGATTAAGAG+AGG - chr4_2:49396341-49396360 Msa0604180:CDS 30.0%
TTCATTATGCCCTAAATGAA+CGG + chr4_2:49396430-49396449 None:intergenic 30.0%
! TTCATTTAGGGCATAATGAA+CGG - chr4_2:49396430-49396449 Msa0604180:intron 30.0%
TTGCACCAAATACATCATTA+AGG + chr4_2:49396585-49396604 None:intergenic 30.0%
AGCAAAAACTTATGCTATGT+TGG + chr4_2:49396663-49396682 None:intergenic 30.0%
CTTGCAGAAAAAATAAGAGA+TGG - chr4_2:49396754-49396773 Msa0604180:intron 30.0%
AAAATAAGAGATGGAGGTAA+TGG - chr4_2:49396763-49396782 Msa0604180:intron 30.0%
TAGATCACTCTATGTATTTC+AGG - chr4_2:49396878-49396897 Msa0604180:intron 30.0%
GGAAGATATTGGAATCATAA+AGG - chr4_2:49396899-49396918 Msa0604180:intron 30.0%
! CTTATAGATTTTCCATTGCT+TGG - chr4_2:49396937-49396956 Msa0604180:intron 30.0%
ATATCACAAATGTATAAGGG+AGG + chr4_2:49397003-49397022 None:intergenic 30.0%
TCCTATTAACTATTTGCAGA+AGG - chr4_2:49397040-49397059 Msa0604180:intron 30.0%
TCCTTCTGCAAATAGTTAAT+AGG + chr4_2:49397044-49397063 None:intergenic 30.0%
TGTAGTAGTTTATTCCTTCA+CGG + chr4_2:49397087-49397106 None:intergenic 30.0%
TGCTTAATTTCATATCCATG+TGG - chr4_2:49397160-49397179 Msa0604180:intron 30.0%
ATTTATGATTGACAACCACA+TGG + chr4_2:49397178-49397197 None:intergenic 30.0%
ATAATCGTCAACAATAATGC+AGG - chr4_2:49397196-49397215 Msa0604180:intron 30.0%
! ATATGTGACTCTTTTCCATT+GGG - chr4_2:49397228-49397247 Msa0604180:intron 30.0%
! ATCTTGCAGAGATGATTTTA+GGG - chr4_2:49397405-49397424 Msa0604180:CDS 30.0%
ATTGATATGAGTAACAATGG+TGG + chr4_2:49395873-49395892 None:intergenic 30.0%
!! AGCATTGATATGAGTAACAA+TGG + chr4_2:49395876-49395895 None:intergenic 30.0%
ATATTATTTGGACATGTTGC+AGG + chr4_2:49396280-49396299 None:intergenic 30.0%
GTAAATCGTTAGATTAAGAG+AGG - chr4_2:49396341-49396360 Msa0604180:CDS 30.0%
TTCATTATGCCCTAAATGAA+CGG + chr4_2:49396430-49396449 None:intergenic 30.0%
! TTCATTTAGGGCATAATGAA+CGG - chr4_2:49396430-49396449 Msa0604180:intron 30.0%
TTGCACCAAATACATCATTA+AGG + chr4_2:49396585-49396604 None:intergenic 30.0%
AGCAAAAACTTATGCTATGT+TGG + chr4_2:49396663-49396682 None:intergenic 30.0%
CTTGCAGAAAAAATAAGAGA+TGG - chr4_2:49396754-49396773 Msa0604180:intron 30.0%
AAAATAAGAGATGGAGGTAA+TGG - chr4_2:49396763-49396782 Msa0604180:intron 30.0%
TAGATCACTCTATGTATTTC+AGG - chr4_2:49396878-49396897 Msa0604180:intron 30.0%
GGAAGATATTGGAATCATAA+AGG - chr4_2:49396899-49396918 Msa0604180:intron 30.0%
! CTTATAGATTTTCCATTGCT+TGG - chr4_2:49396937-49396956 Msa0604180:intron 30.0%
ATATCACAAATGTATAAGGG+AGG + chr4_2:49397003-49397022 None:intergenic 30.0%
TCCTATTAACTATTTGCAGA+AGG - chr4_2:49397040-49397059 Msa0604180:intron 30.0%
TCCTTCTGCAAATAGTTAAT+AGG + chr4_2:49397044-49397063 None:intergenic 30.0%
TGTAGTAGTTTATTCCTTCA+CGG + chr4_2:49397087-49397106 None:intergenic 30.0%
TGCTTAATTTCATATCCATG+TGG - chr4_2:49397160-49397179 Msa0604180:intron 30.0%
ATTTATGATTGACAACCACA+TGG + chr4_2:49397178-49397197 None:intergenic 30.0%
ATAATCGTCAACAATAATGC+AGG - chr4_2:49397196-49397215 Msa0604180:intron 30.0%
! ATATGTGACTCTTTTCCATT+GGG - chr4_2:49397228-49397247 Msa0604180:intron 30.0%
! ATCTTGCAGAGATGATTTTA+GGG - chr4_2:49397405-49397424 Msa0604180:CDS 30.0%
ATGGAAAAGGACCAAGTATT+TGG - chr4_2:49396149-49396168 Msa0604180:CDS 35.0%
TGGAAAAGGACCAAGTATTT+GGG - chr4_2:49396150-49396169 Msa0604180:CDS 35.0%
!! GTGAAAGTATCCCAAATACT+TGG + chr4_2:49396163-49396182 None:intergenic 35.0%
AATTCATGCCCGTTCATTTA+GGG - chr4_2:49396418-49396437 Msa0604180:intron 35.0%
TCATTATGCCCTAAATGAAC+GGG + chr4_2:49396429-49396448 None:intergenic 35.0%
TTAAACTTAGTGCAACTTGC+TGG - chr4_2:49396554-49396573 Msa0604180:intron 35.0%
GCAGAAAAAATAAGAGATGG+AGG - chr4_2:49396757-49396776 Msa0604180:intron 35.0%
! ATCGATGAACTATTGGCTAA+TGG - chr4_2:49397115-49397134 Msa0604180:intron 35.0%
CAATGGAAAAGAGTCACATA+TGG + chr4_2:49397229-49397248 None:intergenic 35.0%
! CATATGTGACTCTTTTCCAT+TGG - chr4_2:49397227-49397246 Msa0604180:intron 35.0%
! GATCTTGCAGAGATGATTTT+AGG - chr4_2:49397404-49397423 Msa0604180:CDS 35.0%
! CTACAAGGAATTTGGTGATA+GGG - chr4_2:49397444-49397463 Msa0604180:CDS 35.0%
GGATTACTTTGAATGAACCA+TGG - chr4_2:49397476-49397495 Msa0604180:CDS 35.0%
AGCATGAATGCTTATGCATA+TGG - chr4_2:49397505-49397524 Msa0604180:CDS 35.0%
TGGTTAAATCTGAATTGCAC+AGG - chr4_2:49397556-49397575 Msa0604180:CDS 35.0%
TTAAATCTGAATTGCACAGG+AGG - chr4_2:49397559-49397578 Msa0604180:CDS 35.0%
ATGGAAAAGGACCAAGTATT+TGG - chr4_2:49396149-49396168 Msa0604180:CDS 35.0%
TGGAAAAGGACCAAGTATTT+GGG - chr4_2:49396150-49396169 Msa0604180:CDS 35.0%
!! GTGAAAGTATCCCAAATACT+TGG + chr4_2:49396163-49396182 None:intergenic 35.0%
AATTCATGCCCGTTCATTTA+GGG - chr4_2:49396418-49396437 Msa0604180:intron 35.0%
TCATTATGCCCTAAATGAAC+GGG + chr4_2:49396429-49396448 None:intergenic 35.0%
TTAAACTTAGTGCAACTTGC+TGG - chr4_2:49396554-49396573 Msa0604180:intron 35.0%
GCAGAAAAAATAAGAGATGG+AGG - chr4_2:49396757-49396776 Msa0604180:intron 35.0%
! ATCGATGAACTATTGGCTAA+TGG - chr4_2:49397115-49397134 Msa0604180:intron 35.0%
CAATGGAAAAGAGTCACATA+TGG + chr4_2:49397229-49397248 None:intergenic 35.0%
! CATATGTGACTCTTTTCCAT+TGG - chr4_2:49397227-49397246 Msa0604180:intron 35.0%
! GATCTTGCAGAGATGATTTT+AGG - chr4_2:49397404-49397423 Msa0604180:CDS 35.0%
! CTACAAGGAATTTGGTGATA+GGG - chr4_2:49397444-49397463 Msa0604180:CDS 35.0%
GGATTACTTTGAATGAACCA+TGG - chr4_2:49397476-49397495 Msa0604180:CDS 35.0%
AGCATGAATGCTTATGCATA+TGG - chr4_2:49397505-49397524 Msa0604180:CDS 35.0%
TGGTTAAATCTGAATTGCAC+AGG - chr4_2:49397556-49397575 Msa0604180:CDS 35.0%
TTAAATCTGAATTGCACAGG+AGG - chr4_2:49397559-49397578 Msa0604180:CDS 35.0%
!! AACAATGGTGGTGGCAATAA+TGG + chr4_2:49395861-49395880 None:intergenic 40.0%
GATATGAGTAACAATGGTGG+TGG + chr4_2:49395870-49395889 None:intergenic 40.0%
AACAGCTTCTTCTGCATTTC+AGG - chr4_2:49395976-49395995 Msa0604180:CDS 40.0%
GCAGCATTTGAAGATGGAAA+AGG - chr4_2:49396136-49396155 Msa0604180:intron 40.0%
GAATTCATGCCCGTTCATTT+AGG - chr4_2:49396417-49396436 Msa0604180:intron 40.0%
AGCTCCTTTCTTTATGCATG+TGG - chr4_2:49396461-49396480 Msa0604180:intron 40.0%
GCTCCTTTCTTTATGCATGT+GGG - chr4_2:49396462-49396481 Msa0604180:intron 40.0%
GATCCCACATGCATAAAGAA+AGG + chr4_2:49396468-49396487 None:intergenic 40.0%
TAAGTAGCTTCTGAATGCCT+TGG - chr4_2:49396633-49396652 Msa0604180:CDS 40.0%
TATGCTATGTTGGATCTCCA+AGG + chr4_2:49396653-49396672 None:intergenic 40.0%
TCCATTCATGCTACGTAACT+AGG + chr4_2:49396709-49396728 None:intergenic 40.0%
!! CAAGGTATGTAGTTTTGCAG+AGG - chr4_2:49396816-49396835 Msa0604180:intron 40.0%
TTTGCAGAAGGAAAGCTTAG+TGG - chr4_2:49397052-49397071 Msa0604180:intron 40.0%
CAACCTCATCGATGAACTAT+TGG - chr4_2:49397108-49397127 Msa0604180:intron 40.0%
TAGCCAATAGTTCATCGATG+AGG + chr4_2:49397114-49397133 None:intergenic 40.0%
!!! ATGACGGTTTTTTAAGCCCT+CGG - chr4_2:49397278-49397297 Msa0604180:CDS 40.0%
AAATCATCTCTGCAAGATCG+CGG + chr4_2:49397403-49397422 None:intergenic 40.0%
GACCTTTGCTACAAGGAATT+TGG - chr4_2:49397436-49397455 Msa0604180:CDS 40.0%
CACCAAATTCCTTGTAGCAA+AGG + chr4_2:49397441-49397460 None:intergenic 40.0%
! GCTACAAGGAATTTGGTGAT+AGG - chr4_2:49397443-49397462 Msa0604180:CDS 40.0%
! TTGGTGATAGGGTGAAACAT+TGG - chr4_2:49397455-49397474 Msa0604180:CDS 40.0%
TGCATATGGAAAGTTTGCAC+CGG - chr4_2:49397519-49397538 Msa0604180:CDS 40.0%
!! AACAATGGTGGTGGCAATAA+TGG + chr4_2:49395861-49395880 None:intergenic 40.0%
GATATGAGTAACAATGGTGG+TGG + chr4_2:49395870-49395889 None:intergenic 40.0%
AACAGCTTCTTCTGCATTTC+AGG - chr4_2:49395976-49395995 Msa0604180:CDS 40.0%
GCAGCATTTGAAGATGGAAA+AGG - chr4_2:49396136-49396155 Msa0604180:intron 40.0%
GAATTCATGCCCGTTCATTT+AGG - chr4_2:49396417-49396436 Msa0604180:intron 40.0%
AGCTCCTTTCTTTATGCATG+TGG - chr4_2:49396461-49396480 Msa0604180:intron 40.0%
GCTCCTTTCTTTATGCATGT+GGG - chr4_2:49396462-49396481 Msa0604180:intron 40.0%
GATCCCACATGCATAAAGAA+AGG + chr4_2:49396468-49396487 None:intergenic 40.0%
TAAGTAGCTTCTGAATGCCT+TGG - chr4_2:49396633-49396652 Msa0604180:CDS 40.0%
TATGCTATGTTGGATCTCCA+AGG + chr4_2:49396653-49396672 None:intergenic 40.0%
TCCATTCATGCTACGTAACT+AGG + chr4_2:49396709-49396728 None:intergenic 40.0%
!! CAAGGTATGTAGTTTTGCAG+AGG - chr4_2:49396816-49396835 Msa0604180:intron 40.0%
TTTGCAGAAGGAAAGCTTAG+TGG - chr4_2:49397052-49397071 Msa0604180:intron 40.0%
CAACCTCATCGATGAACTAT+TGG - chr4_2:49397108-49397127 Msa0604180:intron 40.0%
TAGCCAATAGTTCATCGATG+AGG + chr4_2:49397114-49397133 None:intergenic 40.0%
!!! ATGACGGTTTTTTAAGCCCT+CGG - chr4_2:49397278-49397297 Msa0604180:CDS 40.0%
AAATCATCTCTGCAAGATCG+CGG + chr4_2:49397403-49397422 None:intergenic 40.0%
GACCTTTGCTACAAGGAATT+TGG - chr4_2:49397436-49397455 Msa0604180:CDS 40.0%
CACCAAATTCCTTGTAGCAA+AGG + chr4_2:49397441-49397460 None:intergenic 40.0%
! GCTACAAGGAATTTGGTGAT+AGG - chr4_2:49397443-49397462 Msa0604180:CDS 40.0%
! TTGGTGATAGGGTGAAACAT+TGG - chr4_2:49397455-49397474 Msa0604180:CDS 40.0%
TGCATATGGAAAGTTTGCAC+CGG - chr4_2:49397519-49397538 Msa0604180:CDS 40.0%
CGAAGATGGAGTAGTGAAGA+AGG + chr4_2:49395905-49395924 None:intergenic 45.0%
! GCGACTTTTCCGATCTCAAT+CGG - chr4_2:49395924-49395943 Msa0604180:CDS 45.0%
GAAACAGGTCCGATTGAGAT+CGG + chr4_2:49395936-49395955 None:intergenic 45.0%
! GAAGGTGCAGCATTTGAAGA+TGG - chr4_2:49396130-49396149 Msa0604180:intron 45.0%
ACTTTCACTCATGAACACCC+AGG - chr4_2:49396175-49396194 Msa0604180:CDS 45.0%
!! GTTGGCTTTACGATGCAAGT+TGG + chr4_2:49396391-49396410 None:intergenic 45.0%
GCCTAGTTACGTAGCATGAA+TGG - chr4_2:49396705-49396724 Msa0604180:intron 45.0%
TAGCACTCTAGACCAAGCAA+TGG + chr4_2:49396952-49396971 None:intergenic 45.0%
!! TACTCATCCTCTAAGGCTTG+AGG + chr4_2:49397259-49397278 None:intergenic 45.0%
GCCTTAGAGGATGAGTATGA+CGG - chr4_2:49397262-49397281 Msa0604180:CDS 45.0%
ACCGTCATACTCATCCTCTA+AGG + chr4_2:49397266-49397285 None:intergenic 45.0%
CTATGCTGACCTTTGCTACA+AGG - chr4_2:49397429-49397448 Msa0604180:CDS 45.0%
GCATATGGAAAGTTTGCACC+GGG - chr4_2:49397520-49397539 Msa0604180:CDS 45.0%
AACCAATCAGAACATCGACC+CGG + chr4_2:49397541-49397560 None:intergenic 45.0%
GAATTGCACAGGAGGTGATT+CGG - chr4_2:49397567-49397586 Msa0604180:CDS 45.0%
AATTGCACAGGAGGTGATTC+GGG - chr4_2:49397568-49397587 Msa0604180:CDS 45.0%
! TGGTAGTGCGCAGTCAAATA+CGG + chr4_2:49397601-49397620 None:intergenic 45.0%
CGAAGATGGAGTAGTGAAGA+AGG + chr4_2:49395905-49395924 None:intergenic 45.0%
! GCGACTTTTCCGATCTCAAT+CGG - chr4_2:49395924-49395943 Msa0604180:CDS 45.0%
GAAACAGGTCCGATTGAGAT+CGG + chr4_2:49395936-49395955 None:intergenic 45.0%
! GAAGGTGCAGCATTTGAAGA+TGG - chr4_2:49396130-49396149 Msa0604180:intron 45.0%
ACTTTCACTCATGAACACCC+AGG - chr4_2:49396175-49396194 Msa0604180:CDS 45.0%
!! GTTGGCTTTACGATGCAAGT+TGG + chr4_2:49396391-49396410 None:intergenic 45.0%
GCCTAGTTACGTAGCATGAA+TGG - chr4_2:49396705-49396724 Msa0604180:intron 45.0%
TAGCACTCTAGACCAAGCAA+TGG + chr4_2:49396952-49396971 None:intergenic 45.0%
!! TACTCATCCTCTAAGGCTTG+AGG + chr4_2:49397259-49397278 None:intergenic 45.0%
GCCTTAGAGGATGAGTATGA+CGG - chr4_2:49397262-49397281 Msa0604180:CDS 45.0%
ACCGTCATACTCATCCTCTA+AGG + chr4_2:49397266-49397285 None:intergenic 45.0%
CTATGCTGACCTTTGCTACA+AGG - chr4_2:49397429-49397448 Msa0604180:CDS 45.0%
GCATATGGAAAGTTTGCACC+GGG - chr4_2:49397520-49397539 Msa0604180:CDS 45.0%
AACCAATCAGAACATCGACC+CGG + chr4_2:49397541-49397560 None:intergenic 45.0%
GAATTGCACAGGAGGTGATT+CGG - chr4_2:49397567-49397586 Msa0604180:CDS 45.0%
AATTGCACAGGAGGTGATTC+GGG - chr4_2:49397568-49397587 Msa0604180:CDS 45.0%
! TGGTAGTGCGCAGTCAAATA+CGG + chr4_2:49397601-49397620 None:intergenic 45.0%
!! AATAACATATTAATATTATT+TGG + chr4_2:49396292-49396311 None:intergenic 5.0%
!! AATAACATATTAATATTATT+TGG + chr4_2:49396292-49396311 None:intergenic 5.0%
GATCGGAAAAGTCGCGAAGA+TGG + chr4_2:49395919-49395938 None:intergenic 50.0%
!!! TTCCCGCCAGGCTTTGTTTT+CGG - chr4_2:49395953-49395972 Msa0604180:CDS 50.0%
TTCCGAAAACAAAGCCTGGC+GGG + chr4_2:49395958-49395977 None:intergenic 50.0%
GTTCCGAAAACAAAGCCTGG+CGG + chr4_2:49395959-49395978 None:intergenic 50.0%
GCTGTTCCGAAAACAAAGCC+TGG + chr4_2:49395962-49395981 None:intergenic 50.0%
GGGCATGAATTCGCTACAGT+TGG + chr4_2:49396409-49396428 None:intergenic 50.0%
GGGCATAATGAACGGACATG+TGG - chr4_2:49396438-49396457 Msa0604180:intron 50.0%
TAGCCGACGACGCATATCAT+CGG - chr4_2:49396791-49396810 Msa0604180:intron 50.0%
! GTACCGATGATATGCGTCGT+CGG + chr4_2:49396797-49396816 None:intergenic 50.0%
CGACGCATATCATCGGTACA+AGG - chr4_2:49396798-49396817 Msa0604180:intron 50.0%
GCAGAAGGAAAGCTTAGTGG+AGG - chr4_2:49397055-49397074 Msa0604180:intron 50.0%
! AGTGGAGGTGTAAACCGTGA+AGG - chr4_2:49397070-49397089 Msa0604180:intron 50.0%
AGGCTTGAGGAACATCCCAA+TGG + chr4_2:49397246-49397265 None:intergenic 50.0%
GGATGTTCCTCAAGCCTTAG+AGG - chr4_2:49397249-49397268 Msa0604180:CDS 50.0%
! GTGTCACTCACACAATCCGA+GGG + chr4_2:49397297-49397316 None:intergenic 50.0%
GCATTCATGCTCACACTCCA+TGG + chr4_2:49397496-49397515 None:intergenic 50.0%
ATTGCACAGGAGGTGATTCG+GGG - chr4_2:49397569-49397588 Msa0604180:CDS 50.0%
GATCGGAAAAGTCGCGAAGA+TGG + chr4_2:49395919-49395938 None:intergenic 50.0%
!!! TTCCCGCCAGGCTTTGTTTT+CGG - chr4_2:49395953-49395972 Msa0604180:CDS 50.0%
TTCCGAAAACAAAGCCTGGC+GGG + chr4_2:49395958-49395977 None:intergenic 50.0%
GTTCCGAAAACAAAGCCTGG+CGG + chr4_2:49395959-49395978 None:intergenic 50.0%
GCTGTTCCGAAAACAAAGCC+TGG + chr4_2:49395962-49395981 None:intergenic 50.0%
GGGCATGAATTCGCTACAGT+TGG + chr4_2:49396409-49396428 None:intergenic 50.0%
GGGCATAATGAACGGACATG+TGG - chr4_2:49396438-49396457 Msa0604180:intron 50.0%
TAGCCGACGACGCATATCAT+CGG - chr4_2:49396791-49396810 Msa0604180:intron 50.0%
! GTACCGATGATATGCGTCGT+CGG + chr4_2:49396797-49396816 None:intergenic 50.0%
CGACGCATATCATCGGTACA+AGG - chr4_2:49396798-49396817 Msa0604180:intron 50.0%
GCAGAAGGAAAGCTTAGTGG+AGG - chr4_2:49397055-49397074 Msa0604180:intron 50.0%
! AGTGGAGGTGTAAACCGTGA+AGG - chr4_2:49397070-49397089 Msa0604180:intron 50.0%
AGGCTTGAGGAACATCCCAA+TGG + chr4_2:49397246-49397265 None:intergenic 50.0%
GGATGTTCCTCAAGCCTTAG+AGG - chr4_2:49397249-49397268 Msa0604180:CDS 50.0%
! GTGTCACTCACACAATCCGA+GGG + chr4_2:49397297-49397316 None:intergenic 50.0%
GCATTCATGCTCACACTCCA+TGG + chr4_2:49397496-49397515 None:intergenic 50.0%
ATTGCACAGGAGGTGATTCG+GGG - chr4_2:49397569-49397588 Msa0604180:CDS 50.0%
AACAAAGCCTGGCGGGAAAC+AGG + chr4_2:49395951-49395970 None:intergenic 55.0%
!! GGTGTCACTCACACAATCCG+AGG + chr4_2:49397298-49397317 None:intergenic 55.0%
CACCGGGTCGATGTTCTGAT+TGG - chr4_2:49397536-49397555 Msa0604180:CDS 55.0%
AACAAAGCCTGGCGGGAAAC+AGG + chr4_2:49395951-49395970 None:intergenic 55.0%
!! GGTGTCACTCACACAATCCG+AGG + chr4_2:49397298-49397317 None:intergenic 55.0%
CACCGGGTCGATGTTCTGAT+TGG - chr4_2:49397536-49397555 Msa0604180:CDS 55.0%
AATCGGACCTGTTTCCCGCC+AGG - chr4_2:49395941-49395960 Msa0604180:CDS 60.0%
AATCGGACCTGTTTCCCGCC+AGG - chr4_2:49395941-49395960 Msa0604180:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 49395812 49397633 49395812 ID=Msa0604180;Name=Msa0604180
chr4_2 mRNA 49395812 49397633 49395812 ID=Msa0604180-mRNA-1;Parent=Msa0604180;Name=Msa0604180-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|0.83|0.71|1|0.83|0.85|7|0|281
chr4_2 exon 49395812 49396031 49395812 ID=Msa0604180-mRNA-1:exon:11459;Parent=Msa0604180-mRNA-1
chr4_2 exon 49396140 49396227 49396140 ID=Msa0604180-mRNA-1:exon:11458;Parent=Msa0604180-mRNA-1
chr4_2 exon 49396309 49396386 49396309 ID=Msa0604180-mRNA-1:exon:11457;Parent=Msa0604180-mRNA-1
chr4_2 exon 49396470 49396545 49396470 ID=Msa0604180-mRNA-1:exon:11456;Parent=Msa0604180-mRNA-1
chr4_2 exon 49396626 49396684 49396626 ID=Msa0604180-mRNA-1:exon:11455;Parent=Msa0604180-mRNA-1
chr4_2 exon 49397249 49397318 49397249 ID=Msa0604180-mRNA-1:exon:11454;Parent=Msa0604180-mRNA-1
chr4_2 exon 49397382 49397633 49397382 ID=Msa0604180-mRNA-1:exon:11453;Parent=Msa0604180-mRNA-1
chr4_2 CDS 49397382 49397633 49397382 ID=Msa0604180-mRNA-1:cds;Parent=Msa0604180-mRNA-1
chr4_2 CDS 49397249 49397318 49397249 ID=Msa0604180-mRNA-1:cds;Parent=Msa0604180-mRNA-1
chr4_2 CDS 49396626 49396684 49396626 ID=Msa0604180-mRNA-1:cds;Parent=Msa0604180-mRNA-1
chr4_2 CDS 49396470 49396545 49396470 ID=Msa0604180-mRNA-1:cds;Parent=Msa0604180-mRNA-1
chr4_2 CDS 49396309 49396386 49396309 ID=Msa0604180-mRNA-1:cds;Parent=Msa0604180-mRNA-1
chr4_2 CDS 49396140 49396227 49396140 ID=Msa0604180-mRNA-1:cds;Parent=Msa0604180-mRNA-1
chr4_2 CDS 49395812 49396031 49395812 ID=Msa0604180-mRNA-1:cds;Parent=Msa0604180-mRNA-1
Gene Sequence

>Msa0604180

ATGGCAGCATTTGATTTCAACGTGTTTTTGTTACTCTTCATTTTTTCCATTATTGCCACCACCATTGTTACTCATATCAATGCTTTTGAACCTTCTTCACTACTCCATCTTCGCGACTTTTCCGATCTCAATCGGACCTGTTTCCCGCCAGGCTTTGTTTTCGGAACAGCTTCTTCTGCATTTCAGGCATGCACAAACAAACATCTTTCAATTTTATTATTATTATTTATAACATGCATGCAATGTAGAAATTACGAAGGTGCAGCATTTGAAGATGGAAAAGGACCAAGTATTTGGGATACTTTCACTCATGAACACCCAGAAAAAATAAGAGATGGAGGTAATGGAGATGTAGCCGACGACGCATATCATCGGTACAAGGAAGATATTGGAATCATAAAGGATTTGAATATGGATGCTTATAGATTTTCCATTGCTTGGTCTAGAGTGCTACCAAAAGGAAAGCTTAGTGGAGGTGTAAACCGTGAAGGAATAAACTACTACAACAACCTCATCGATGAACTATTGGCTAATGGTTTGCAGCCATATGTGACTCTTTTCCATTGGGATGTTCCTCAAGCCTTAGAGGATGAGTATGACGGTTTTTTAAGCCCTCGGATTGTAGATGATTTTAGGGACTATGCTGACCTTTGCTACAAGGAATTTGGTGATAGGGTGAAACATTGGATTACTTTGAATGAACCATGGAGTGTGAGCATGAATGCTTATGCATATGGAAAGTTTGCACCGGGTCGATGTTCTGATTGGTTAAATCTGAATTGCACAGGAGGTGATTCGGGGACAGAACCGTATTTGACTGCGCACTACCAACTTCTTGCTCAT
Protein sequence

>Msa0604180

MAAFDFNVFLLLFIFSIIATTIVTHINAFEPSSLLHLRDFSDLNRTCFPPGFVFGTASSAFQACTNKHLSILLLLFITCMQCRNYEGAAFEDGKGPSIWDTFTHEHPEKIRDGGNGDVADDAYHRYKEDIGIIKDLNMDAYRFSIAWSRVLPKGKLSGGVNREGINYYNNLIDELLANGLQPYVTLFHWDVPQALEDEYDGFLSPRIVDDFRDYADLCYKEFGDRVKHWITLNEPWSVSMNAYAYGKFAPGRCSDWLNLNCTGGDSGTEPYLTAHYQLLAH