Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606450 | XP_003607108.1 | 96.190 | 315 | 12 | 0 | 1 | 315 | 1 | 315 | 0.0 | 631 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606450 | sp|E7C196|MER_ERYCB | 61.231 | 325 | 113 | 3 | 4 | 315 | 3 | 327 | 3.04e-136 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606450 | G7JL30 | 96.190 | 315 | 12 | 0 | 1 | 315 | 1 | 315 | 0.0 | 631 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606450 | Msa1191610 | 0.935261 | 1.119180e-96 | -8.615850e-47 |
| Msa0606450 | Msa1191630 | 0.841200 | 5.490233e-58 | -8.615850e-47 |
| Msa0184150 | Msa0606450 | 0.988621 | 9.658280e-175 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606450 | MtrunA17_Chr6g0480021 | 73.438 | 320 | 61 | 3 | 1 | 314 | 1 | 302 | 1.13e-172 | 480 |
| Msa0606450 | MtrunA17_Chr6g0480011 | 65.528 | 322 | 104 | 3 | 1 | 315 | 1 | 322 | 3.10e-157 | 442 |
| Msa0606450 | MtrunA17_Chr6g0479981 | 61.950 | 318 | 114 | 3 | 1 | 312 | 1 | 317 | 9.48e-150 | 423 |
| Msa0606450 | MtrunA17_Chr4g0036261 | 97.283 | 184 | 5 | 0 | 132 | 315 | 1 | 184 | 1.66e-132 | 374 |
| Msa0606450 | MtrunA17_Chr1g0173621 | 52.469 | 324 | 137 | 3 | 1 | 315 | 1 | 316 | 3.82e-117 | 340 |
| Msa0606450 | MtrunA17_Chr4g0036301 | 91.228 | 171 | 15 | 0 | 144 | 314 | 1 | 171 | 9.50e-113 | 323 |
| Msa0606450 | MtrunA17_Chr4g0036321 | 87.791 | 172 | 21 | 0 | 144 | 315 | 1 | 172 | 1.59e-108 | 313 |
| Msa0606450 | MtrunA17_Chr3g0121001 | 50.949 | 316 | 137 | 5 | 6 | 312 | 7 | 313 | 1.97e-108 | 318 |
| Msa0606450 | MtrunA17_Chr5g0447951 | 52.508 | 299 | 132 | 4 | 1 | 291 | 1 | 297 | 3.64e-95 | 284 |
| Msa0606450 | MtrunA17_Chr5g0447961 | 52.508 | 299 | 132 | 4 | 1 | 291 | 1 | 297 | 3.64e-95 | 284 |
| Msa0606450 | MtrunA17_Chr5g0447941 | 52.508 | 299 | 132 | 4 | 1 | 291 | 1 | 297 | 4.24e-95 | 284 |
| Msa0606450 | MtrunA17_Chr4g0018921 | 46.372 | 317 | 161 | 5 | 5 | 315 | 2 | 315 | 6.68e-95 | 283 |
| Msa0606450 | MtrunA17_Chr8g0368921 | 45.367 | 313 | 160 | 5 | 11 | 315 | 10 | 319 | 1.24e-89 | 270 |
| Msa0606450 | MtrunA17_Chr8g0368931 | 43.689 | 309 | 167 | 4 | 11 | 315 | 10 | 315 | 4.81e-86 | 261 |
| Msa0606450 | MtrunA17_Chr4g0009531 | 45.631 | 309 | 159 | 5 | 11 | 315 | 10 | 313 | 1.81e-84 | 257 |
| Msa0606450 | MtrunA17_Chr7g0239701 | 43.366 | 309 | 167 | 5 | 11 | 315 | 14 | 318 | 1.01e-80 | 247 |
| Msa0606450 | MtrunA17_Chr4g0009581 | 46.405 | 306 | 146 | 5 | 11 | 312 | 11 | 302 | 2.58e-77 | 238 |
| Msa0606450 | MtrunA17_Chr4g0036251 | 95.050 | 101 | 5 | 0 | 1 | 101 | 1 | 101 | 2.93e-66 | 203 |
| Msa0606450 | MtrunA17_Chr7g0243551 | 40.860 | 279 | 156 | 4 | 11 | 286 | 17 | 289 | 6.02e-63 | 201 |
| Msa0606450 | MtrunA17_Chr4g0036051 | 39.863 | 291 | 159 | 6 | 9 | 286 | 3 | 290 | 2.73e-60 | 195 |
| Msa0606450 | MtrunA17_Chr4g0036311 | 81.132 | 106 | 14 | 2 | 1 | 100 | 1 | 106 | 5.56e-57 | 179 |
| Msa0606450 | MtrunA17_Chr4g0009621 | 46.473 | 241 | 115 | 3 | 75 | 314 | 1 | 228 | 2.22e-56 | 182 |
| Msa0606450 | MtrunA17_Chr4g0036291 | 78.302 | 106 | 17 | 2 | 1 | 100 | 1 | 106 | 1.18e-54 | 173 |
| Msa0606450 | MtrunA17_Chr6g0479811 | 64.486 | 107 | 38 | 0 | 184 | 290 | 1 | 107 | 1.55e-46 | 153 |
| Msa0606450 | MtrunA17_Chr6g0479791 | 76.744 | 86 | 18 | 1 | 231 | 314 | 18 | 103 | 2.70e-39 | 134 |
| Msa0606450 | MtrunA17_Chr6g0479801 | 70.833 | 48 | 14 | 0 | 99 | 146 | 38 | 85 | 1.82e-18 | 78.6 |
| Msa0606450 | MtrunA17_Chr3g0127491 | 25.676 | 296 | 165 | 9 | 30 | 288 | 73 | 350 | 1.37e-16 | 79.3 |
| Msa0606450 | MtrunA17_Chr3g0095421 | 24.126 | 286 | 165 | 9 | 36 | 286 | 83 | 351 | 1.12e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606450 | AT1G59960.1 | 50.307 | 326 | 151 | 4 | 1 | 315 | 1 | 326 | 2.02e-119 | 347 |
| Msa0606450 | AT1G59950.1 | 51.307 | 306 | 142 | 2 | 17 | 315 | 15 | 320 | 1.57e-111 | 326 |
| Msa0606450 | AT2G37790.1 | 48.377 | 308 | 153 | 3 | 11 | 315 | 10 | 314 | 5.60e-99 | 294 |
| Msa0606450 | AT2G37770.2 | 48.544 | 309 | 152 | 4 | 11 | 315 | 10 | 315 | 4.13e-97 | 290 |
| Msa0606450 | AT3G53880.1 | 46.926 | 309 | 157 | 4 | 11 | 315 | 10 | 315 | 6.10e-92 | 276 |
| Msa0606450 | AT5G62420.1 | 44.762 | 315 | 158 | 8 | 11 | 315 | 8 | 316 | 2.33e-88 | 267 |
| Msa0606450 | AT2G37760.2 | 46.405 | 306 | 159 | 4 | 11 | 315 | 10 | 311 | 4.65e-88 | 266 |
| Msa0606450 | AT2G37760.1 | 46.405 | 306 | 159 | 4 | 11 | 315 | 10 | 311 | 4.65e-88 | 266 |
| Msa0606450 | AT3G53880.2 | 46.619 | 281 | 144 | 3 | 11 | 288 | 10 | 287 | 2.86e-81 | 249 |
| Msa0606450 | AT2G37760.5 | 46.429 | 280 | 146 | 3 | 11 | 290 | 10 | 285 | 1.29e-79 | 244 |
| Msa0606450 | AT2G37760.4 | 46.071 | 280 | 147 | 3 | 11 | 290 | 10 | 285 | 5.11e-79 | 242 |
| Msa0606450 | AT2G37760.3 | 46.071 | 280 | 147 | 3 | 11 | 290 | 10 | 285 | 5.11e-79 | 242 |
| Msa0606450 | AT5G01670.1 | 41.009 | 317 | 175 | 7 | 2 | 312 | 9 | 319 | 1.44e-78 | 242 |
| Msa0606450 | AT2G37760.6 | 46.743 | 261 | 135 | 3 | 56 | 315 | 8 | 265 | 2.64e-73 | 227 |
| Msa0606450 | AT2G37760.7 | 46.743 | 261 | 135 | 3 | 56 | 315 | 8 | 265 | 2.64e-73 | 227 |
| Msa0606450 | AT5G01670.2 | 37.791 | 344 | 175 | 8 | 2 | 312 | 9 | 346 | 1.32e-72 | 228 |
| Msa0606450 | AT2G21260.1 | 37.966 | 295 | 167 | 6 | 8 | 289 | 2 | 293 | 1.43e-68 | 216 |
| Msa0606450 | AT2G21250.1 | 38.095 | 294 | 166 | 6 | 8 | 288 | 2 | 292 | 8.62e-68 | 214 |
| Msa0606450 | AT2G37770.1 | 53.030 | 198 | 87 | 3 | 11 | 205 | 10 | 204 | 7.63e-64 | 203 |
| Msa0606450 | AT2G21250.2 | 38.723 | 235 | 128 | 6 | 8 | 229 | 2 | 233 | 1.70e-50 | 167 |
| Msa0606450 | AT2G21260.2 | 34.091 | 220 | 133 | 4 | 80 | 289 | 8 | 225 | 2.11e-43 | 149 |
| Msa0606450 | AT1G06690.1 | 26.042 | 288 | 157 | 8 | 36 | 286 | 94 | 362 | 6.74e-16 | 77.8 |
| Msa0606450 | AT1G60750.1 | 27.244 | 312 | 177 | 12 | 21 | 308 | 35 | 320 | 1.44e-11 | 64.7 |
Find 79 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTCCCTTTGATATAAA+AGG | 0.194226 | 4_2:+52818538 | Msa0606450:CDS |
| GCATCTTGTTTCAAACTTAC+TGG | 0.245807 | 4_2:-52818487 | None:intergenic |
| ATGCTTGATGCCATTGAAAT+AGG | 0.262072 | 4_2:+52818138 | Msa0606450:CDS |
| TTTGATACTGCTGCTCTCTA+TGG | 0.286783 | 4_2:+52818171 | Msa0606450:CDS |
| TGAAAGGTTAAACTTTAAAA+AGG | 0.291121 | 4_2:+52818510 | Msa0606450:CDS |
| AACTAATATCTTTAATTCAA+TGG | 0.334137 | 4_2:+52819903 | Msa0606450:three_prime_UTR |
| ATTAACTGCAGGAGCGATTT+CGG | 0.335579 | 4_2:-52818662 | None:intergenic |
| TCTGCAATTTCGCGCAGAAT+TGG | 0.343221 | 4_2:-52819149 | None:intergenic |
| CCAGAGGTGGTACTAAATTC+AGG | 0.359326 | 4_2:+52818060 | Msa0606450:CDS |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 4_2:+52819588 | Msa0606450:CDS |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 4_2:+52819674 | Msa0606450:CDS |
| TCTATTGGTGTTAGCAACTT+TGG | 0.384780 | 4_2:+52818607 | Msa0606450:CDS |
| CAATGGGAATCGCTCCTTGC+TGG | 0.384972 | 4_2:-52819535 | None:intergenic |
| TGTTCATTACTTCCAAGTTA+TGG | 0.391308 | 4_2:+52818265 | Msa0606450:CDS |
| AATCGCTCCTGCAGTTAATC+AGG | 0.399261 | 4_2:+52818666 | Msa0606450:CDS |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 4_2:+52819589 | Msa0606450:CDS |
| ATTCTTGTTTGAATAAATGA+TGG | 0.403758 | 4_2:+52819744 | Msa0606450:three_prime_UTR |
| TGGATCTCTATTTGATTCAC+TGG | 0.404097 | 4_2:+52818464 | Msa0606450:CDS |
| AGGAGGATACAAACTAAGTT+GGG | 0.405550 | 4_2:+52819103 | Msa0606450:CDS |
| TATGGAAGAATGTTATAGAT+TGG | 0.407357 | 4_2:+52818573 | Msa0606450:CDS |
| GTTAAAAGTTCACTTACATA+AGG | 0.414597 | 4_2:-52819883 | None:intergenic |
| AAGATGCCAATGATAGGCTT+TGG | 0.418986 | 4_2:+52818087 | Msa0606450:CDS |
| AGTTTCCCTTGTTGCCATGA+TGG | 0.420449 | 4_2:-52819029 | None:intergenic |
| CCTGTTCCAAAGCCTATCAT+TGG | 0.446286 | 4_2:-52818093 | None:intergenic |
| TTGAATAAATGATGGGATCA+TGG | 0.448721 | 4_2:+52819752 | Msa0606450:three_prime_UTR |
| CCTGAATTTAGTACCACCTC+TGG | 0.450236 | 4_2:-52818060 | None:intergenic |
| ATGGAAGAATGTTATAGATT+GGG | 0.461984 | 4_2:+52818574 | Msa0606450:CDS |
| GTTTCCCTTGTTGCCATGAT+GGG | 0.465312 | 4_2:-52819028 | None:intergenic |
| GTTCACTTACATAAGGAACT+TGG | 0.466923 | 4_2:-52819876 | None:intergenic |
| TCATCAAAGCAGATTTCAAA+AGG | 0.467054 | 4_2:+52819649 | Msa0606450:CDS |
| TAGAAAGAAGAGTGTAGCCC+AGG | 0.476626 | 4_2:+52819175 | Msa0606450:CDS |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 4_2:+52818555 | Msa0606450:CDS |
| TAGGAGGATACAAACTAAGT+TGG | 0.494689 | 4_2:+52819102 | Msa0606450:CDS |
| CCTTTGATATAAAAGGAACA+TGG | 0.498973 | 4_2:+52818545 | Msa0606450:CDS |
| CCAATGATAGGCTTTGGAAC+AGG | 0.501514 | 4_2:+52818093 | Msa0606450:CDS |
| AAATCTTGGATTGGAGTATG+TGG | 0.502430 | 4_2:+52818444 | Msa0606450:CDS |
| AGCATCAGTACACCATAACT+TGG | 0.506431 | 4_2:-52818277 | None:intergenic |
| TTCTTGTTTGAATAAATGAT+GGG | 0.508947 | 4_2:+52819745 | Msa0606450:three_prime_UTR |
| TTGGGCCTAGCAAAGTCTAT+TGG | 0.512465 | 4_2:+52818592 | Msa0606450:CDS |
| TAACACCAATAGACTTTGCT+AGG | 0.512687 | 4_2:-52818597 | None:intergenic |
| CAGAGGTGGTACTAAATTCA+GGG | 0.518724 | 4_2:+52818061 | Msa0606450:CDS |
| TTATGCAGATAGCACTAAGA+TGG | 0.518946 | 4_2:+52819507 | Msa0606450:intron |
| TCTTATACCTGATTAACTGC+AGG | 0.521626 | 4_2:-52818673 | None:intergenic |
| GTAGTAAAATAATGCAAAGA+GGG | 0.523379 | 4_2:+52819801 | Msa0606450:three_prime_UTR |
| GTGTCAAAAGCTTTAGAGCT+AGG | 0.527948 | 4_2:+52818219 | Msa0606450:CDS |
| TAATGGACCTTACAAAACCT+TGG | 0.530978 | 4_2:+52819691 | Msa0606450:CDS |
| ATGTCTGTAGCCTATTTCAA+TGG | 0.534830 | 4_2:-52818148 | None:intergenic |
| CAAAACCTTGGAGGAGCTGT+GGG | 0.542603 | 4_2:+52819703 | Msa0606450:CDS |
| TTGGGGTTCGCCTACCGTGA+TGG | 0.547041 | 4_2:+52819121 | Msa0606450:CDS |
| ACAAAACCTTGGAGGAGCTG+TGG | 0.564580 | 4_2:+52819702 | Msa0606450:CDS |
| AGGTGGAAATGAACCCATCA+TGG | 0.568456 | 4_2:+52819015 | Msa0606450:intron |
| AGAGAGTTCTGCAAGCAGAA+AGG | 0.571100 | 4_2:+52819053 | Msa0606450:CDS |
| GTTTGAAACAAGATGCTGAA+AGG | 0.572758 | 4_2:+52818494 | Msa0606450:CDS |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4_2:+52819083 | Msa0606450:CDS |
| ATGAACCCATCATGGCAACA+AGG | 0.585669 | 4_2:+52819023 | Msa0606450:CDS |
| AAGGAATCCATGTGAGTGCA+TGG | 0.586898 | 4_2:+52819072 | Msa0606450:CDS |
| CTTTGATATAAAAGGAACAT+GGG | 0.591862 | 4_2:+52818546 | Msa0606450:CDS |
| TGAACCCATCATGGCAACAA+GGG | 0.594189 | 4_2:+52819024 | Msa0606450:CDS |
| AGTAGTAAAATAATGCAAAG+AGG | 0.594846 | 4_2:+52819800 | Msa0606450:three_prime_UTR |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4_2:-52818204 | None:intergenic |
| GCATCAAGCATAACTTGTTG+AGG | 0.602208 | 4_2:-52818126 | None:intergenic |
| TGAAAAGCTTCAACAAGGAG+AGG | 0.604183 | 4_2:+52819558 | Msa0606450:CDS |
| ACCATCCCACAGCTCCTCCA+AGG | 0.604696 | 4_2:-52819708 | None:intergenic |
| TGGACCTTACAAAACCTTGG+AGG | 0.606467 | 4_2:+52819694 | Msa0606450:CDS |
| GTGGTGACCATGCACTCACA+TGG | 0.614668 | 4_2:-52819079 | None:intergenic |
| TCAAGCATAACTTGTTGAGG+AGG | 0.617877 | 4_2:-52818123 | None:intergenic |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.625306 | 4_2:-52819098 | None:intergenic |
| TATGGAACTGAAGAACCTCT+AGG | 0.629164 | 4_2:+52818189 | Msa0606450:CDS |
| GGAAGCAAAGAAAGTTCCAG+AGG | 0.631521 | 4_2:+52818044 | Msa0606450:CDS |
| ATTGGATTCTCCATCACGGT+AGG | 0.633520 | 4_2:-52819131 | None:intergenic |
| CATTGTGAAAAGCTTCAACA+AGG | 0.641536 | 4_2:+52819553 | Msa0606450:CDS |
| AGCAAAGAAAGTTCCAGAGG+TGG | 0.646982 | 4_2:+52818047 | Msa0606450:CDS |
| AAATTATGCTTGCTTCAGAG+TGG | 0.661953 | 4_2:-52818331 | None:intergenic |
| ACCTTGGAGGAGCTGTGGGA+TGG | 0.663501 | 4_2:+52819707 | Msa0606450:CDS |
| AATTCTGCGCGAAATTGCAG+AGG | 0.665637 | 4_2:+52819151 | Msa0606450:CDS |
| GGAGGATACAAACTAAGTTG+GGG | 0.666842 | 4_2:+52819104 | Msa0606450:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 4_2:+52819086 | Msa0606450:CDS |
| CAGAATTGGATTCTCCATCA+CGG | 0.696091 | 4_2:-52819135 | None:intergenic |
| CTAAGATGGATATACCAGCA+AGG | 0.722847 | 4_2:+52819521 | Msa0606450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTGTTTTGGTTTTT+CGG | + | chr4_2:52818406-52818425 | Msa0606450:intron | 15.0% |
| !!! | TTGATATTTTTTAGAAATCT+TGG | + | chr4_2:52818430-52818449 | Msa0606450:intron | 15.0% |
| !! | AAAGAATGAGAATAAATTAT+TGG | - | chr4_2:52818849-52818868 | None:intergenic | 15.0% |
| !!! | TTTTGTTACATATTCTTATT+TGG | + | chr4_2:52818988-52819007 | Msa0606450:intron | 15.0% |
| !!! | AACCTTATCAAAATTTTAAT+TGG | - | chr4_2:52819232-52819251 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | + | chr4_2:52819588-52819607 | Msa0606450:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | chr4_2:52819589-52819608 | Msa0606450:CDS | 15.0% |
| !! | AACTAATATCTTTAATTCAA+TGG | + | chr4_2:52819903-52819922 | Msa0606450:three_prime_UTR | 15.0% |
| !!! | ATATTATTGTTTTGGTTTTT+CGG | + | chr4_2:52818406-52818425 | Msa0606450:intron | 15.0% |
| !!! | TTGATATTTTTTAGAAATCT+TGG | + | chr4_2:52818430-52818449 | Msa0606450:intron | 15.0% |
| !! | AAAGAATGAGAATAAATTAT+TGG | - | chr4_2:52818849-52818868 | None:intergenic | 15.0% |
| !!! | TTTTGTTACATATTCTTATT+TGG | + | chr4_2:52818988-52819007 | Msa0606450:intron | 15.0% |
| !!! | AACCTTATCAAAATTTTAAT+TGG | - | chr4_2:52819232-52819251 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | + | chr4_2:52819588-52819607 | Msa0606450:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | chr4_2:52819589-52819608 | Msa0606450:CDS | 15.0% |
| !! | AACTAATATCTTTAATTCAA+TGG | + | chr4_2:52819903-52819922 | Msa0606450:three_prime_UTR | 15.0% |
| !! | AGTTAAAAGAAGTAGAAAAA+AGG | - | chr4_2:52818363-52818382 | None:intergenic | 20.0% |
| !!! | CTTGTCTAATATTATTGTTT+TGG | + | chr4_2:52818398-52818417 | Msa0606450:intron | 20.0% |
| !!! | ATTTTTTAGAAATCTTGGAT+TGG | + | chr4_2:52818435-52818454 | Msa0606450:intron | 20.0% |
| !!! | TGAAAGGTTAAACTTTAAAA+AGG | + | chr4_2:52818510-52818529 | Msa0606450:CDS | 20.0% |
| !! | ATAGATTCAATACACTTAAT+TGG | + | chr4_2:52818730-52818749 | Msa0606450:intron | 20.0% |
| !!! | ACATATTCTTATTTGGATTT+AGG | + | chr4_2:52818995-52819014 | Msa0606450:intron | 20.0% |
| !!! | AGCCAATTAAAATTTTGATA+AGG | + | chr4_2:52819227-52819246 | Msa0606450:intron | 20.0% |
| !!! | AAGCTGAATTTTAAAACAAA+GGG | - | chr4_2:52819268-52819287 | None:intergenic | 20.0% |
| !!! | AAAGCTGAATTTTAAAACAA+AGG | - | chr4_2:52819269-52819288 | None:intergenic | 20.0% |
| !!! | TTCAGCTTTTTTTTTTTCAA+TGG | + | chr4_2:52819280-52819299 | Msa0606450:intron | 20.0% |
| !! | TCATGATGTGATATTATATT+AGG | - | chr4_2:52819333-52819352 | None:intergenic | 20.0% |
| !!! | ATTCTTGTTTGAATAAATGA+TGG | + | chr4_2:52819744-52819763 | Msa0606450:three_prime_UTR | 20.0% |
| !!! | TTCTTGTTTGAATAAATGAT+GGG | + | chr4_2:52819745-52819764 | Msa0606450:three_prime_UTR | 20.0% |
| !! | AGTTAAAAGAAGTAGAAAAA+AGG | - | chr4_2:52818363-52818382 | None:intergenic | 20.0% |
| !!! | CTTGTCTAATATTATTGTTT+TGG | + | chr4_2:52818398-52818417 | Msa0606450:intron | 20.0% |
| !!! | ATTTTTTAGAAATCTTGGAT+TGG | + | chr4_2:52818435-52818454 | Msa0606450:intron | 20.0% |
| !!! | TGAAAGGTTAAACTTTAAAA+AGG | + | chr4_2:52818510-52818529 | Msa0606450:CDS | 20.0% |
| !! | ATAGATTCAATACACTTAAT+TGG | + | chr4_2:52818730-52818749 | Msa0606450:intron | 20.0% |
| !!! | ACATATTCTTATTTGGATTT+AGG | + | chr4_2:52818995-52819014 | Msa0606450:intron | 20.0% |
| !!! | AGCCAATTAAAATTTTGATA+AGG | + | chr4_2:52819227-52819246 | Msa0606450:intron | 20.0% |
| !!! | AAGCTGAATTTTAAAACAAA+GGG | - | chr4_2:52819268-52819287 | None:intergenic | 20.0% |
| !!! | AAAGCTGAATTTTAAAACAA+AGG | - | chr4_2:52819269-52819288 | None:intergenic | 20.0% |
| !!! | TTCAGCTTTTTTTTTTTCAA+TGG | + | chr4_2:52819280-52819299 | Msa0606450:intron | 20.0% |
| !! | TCATGATGTGATATTATATT+AGG | - | chr4_2:52819333-52819352 | None:intergenic | 20.0% |
| !!! | ATTCTTGTTTGAATAAATGA+TGG | + | chr4_2:52819744-52819763 | Msa0606450:three_prime_UTR | 20.0% |
| !!! | TTCTTGTTTGAATAAATGAT+GGG | + | chr4_2:52819745-52819764 | Msa0606450:three_prime_UTR | 20.0% |
| !! | AAGGTTAAACTTTAAAAAGG+AGG | + | chr4_2:52818513-52818532 | Msa0606450:CDS | 25.0% |
| ! | ATGATTCCCTTTGATATAAA+AGG | + | chr4_2:52818538-52818557 | Msa0606450:CDS | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+GGG | - | chr4_2:52818547-52818566 | None:intergenic | 25.0% |
| ! | CTTTGATATAAAAGGAACAT+GGG | + | chr4_2:52818546-52818565 | Msa0606450:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | + | chr4_2:52818573-52818592 | Msa0606450:CDS | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | + | chr4_2:52818574-52818593 | Msa0606450:CDS | 25.0% |
| !!! | TTTCGATTTTGAAGTAACTT+AGG | - | chr4_2:52818759-52818778 | None:intergenic | 25.0% |
| ! | TATTGGATACTATTTGCATA+GGG | - | chr4_2:52818832-52818851 | None:intergenic | 25.0% |
| ! | TTATTGGATACTATTTGCAT+AGG | - | chr4_2:52818833-52818852 | None:intergenic | 25.0% |
| !! | TATTCTTATTTGGATTTAGG+TGG | + | chr4_2:52818998-52819017 | Msa0606450:intron | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | chr4_2:52819674-52819693 | Msa0606450:CDS | 25.0% |
| ! | AGTAGTAAAATAATGCAAAG+AGG | + | chr4_2:52819800-52819819 | Msa0606450:three_prime_UTR | 25.0% |
| ! | GTAGTAAAATAATGCAAAGA+GGG | + | chr4_2:52819801-52819820 | Msa0606450:three_prime_UTR | 25.0% |
| ! | GTTAAAAGTTCACTTACATA+AGG | - | chr4_2:52819886-52819905 | None:intergenic | 25.0% |
| !! | AAGGTTAAACTTTAAAAAGG+AGG | + | chr4_2:52818513-52818532 | Msa0606450:CDS | 25.0% |
| ! | ATGATTCCCTTTGATATAAA+AGG | + | chr4_2:52818538-52818557 | Msa0606450:CDS | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+GGG | - | chr4_2:52818547-52818566 | None:intergenic | 25.0% |
| ! | CTTTGATATAAAAGGAACAT+GGG | + | chr4_2:52818546-52818565 | Msa0606450:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | + | chr4_2:52818573-52818592 | Msa0606450:CDS | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | + | chr4_2:52818574-52818593 | Msa0606450:CDS | 25.0% |
| !!! | TTTCGATTTTGAAGTAACTT+AGG | - | chr4_2:52818759-52818778 | None:intergenic | 25.0% |
| ! | TATTGGATACTATTTGCATA+GGG | - | chr4_2:52818832-52818851 | None:intergenic | 25.0% |
| ! | TTATTGGATACTATTTGCAT+AGG | - | chr4_2:52818833-52818852 | None:intergenic | 25.0% |
| !! | TATTCTTATTTGGATTTAGG+TGG | + | chr4_2:52818998-52819017 | Msa0606450:intron | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | chr4_2:52819674-52819693 | Msa0606450:CDS | 25.0% |
| ! | AGTAGTAAAATAATGCAAAG+AGG | + | chr4_2:52819800-52819819 | Msa0606450:three_prime_UTR | 25.0% |
| ! | GTAGTAAAATAATGCAAAGA+GGG | + | chr4_2:52819801-52819820 | Msa0606450:three_prime_UTR | 25.0% |
| ! | GTTAAAAGTTCACTTACATA+AGG | - | chr4_2:52819886-52819905 | None:intergenic | 25.0% |
| TGTTCATTACTTCCAAGTTA+TGG | + | chr4_2:52818265-52818284 | Msa0606450:CDS | 30.0% | |
| ! | CCATGTTCCTTTTATATCAA+AGG | - | chr4_2:52818548-52818567 | None:intergenic | 30.0% |
| CCTTTGATATAAAAGGAACA+TGG | + | chr4_2:52818545-52818564 | Msa0606450:CDS | 30.0% | |
| ATATCTAGATGACAATTGTG+TGG | - | chr4_2:52818931-52818950 | None:intergenic | 30.0% | |
| !!! | AATCTAAGGTTTTGAAGAGT+TGG | - | chr4_2:52819357-52819376 | None:intergenic | 30.0% |
| CTTCAAAACCTTAGATTGTT+AGG | + | chr4_2:52819360-52819379 | Msa0606450:intron | 30.0% | |
| GTTAGGTGAGAACAAATAAT+TGG | + | chr4_2:52819377-52819396 | Msa0606450:intron | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | chr4_2:52819554-52819573 | None:intergenic | 30.0% |
| TCATCAAAGCAGATTTCAAA+AGG | + | chr4_2:52819649-52819668 | Msa0606450:CDS | 30.0% | |
| ! | TTGAATAAATGATGGGATCA+TGG | + | chr4_2:52819752-52819771 | Msa0606450:three_prime_UTR | 30.0% |
| TGTTCATTACTTCCAAGTTA+TGG | + | chr4_2:52818265-52818284 | Msa0606450:CDS | 30.0% | |
| ! | CCATGTTCCTTTTATATCAA+AGG | - | chr4_2:52818548-52818567 | None:intergenic | 30.0% |
| CCTTTGATATAAAAGGAACA+TGG | + | chr4_2:52818545-52818564 | Msa0606450:CDS | 30.0% | |
| ATATCTAGATGACAATTGTG+TGG | - | chr4_2:52818931-52818950 | None:intergenic | 30.0% | |
| !!! | AATCTAAGGTTTTGAAGAGT+TGG | - | chr4_2:52819357-52819376 | None:intergenic | 30.0% |
| CTTCAAAACCTTAGATTGTT+AGG | + | chr4_2:52819360-52819379 | Msa0606450:intron | 30.0% | |
| GTTAGGTGAGAACAAATAAT+TGG | + | chr4_2:52819377-52819396 | Msa0606450:intron | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | chr4_2:52819554-52819573 | None:intergenic | 30.0% |
| TCATCAAAGCAGATTTCAAA+AGG | + | chr4_2:52819649-52819668 | Msa0606450:CDS | 30.0% | |
| ! | TTGAATAAATGATGGGATCA+TGG | + | chr4_2:52819752-52819771 | Msa0606450:three_prime_UTR | 30.0% |
| ATGCTTGATGCCATTGAAAT+AGG | + | chr4_2:52818138-52818157 | Msa0606450:CDS | 35.0% | |
| ATGTCTGTAGCCTATTTCAA+TGG | - | chr4_2:52818151-52818170 | None:intergenic | 35.0% | |
| AAATTATGCTTGCTTCAGAG+TGG | - | chr4_2:52818334-52818353 | None:intergenic | 35.0% | |
| ! | AAATCTTGGATTGGAGTATG+TGG | + | chr4_2:52818444-52818463 | Msa0606450:CDS | 35.0% |
| TGGATCTCTATTTGATTCAC+TGG | + | chr4_2:52818464-52818483 | Msa0606450:CDS | 35.0% | |
| ! | GCATCTTGTTTCAAACTTAC+TGG | - | chr4_2:52818490-52818509 | None:intergenic | 35.0% |
| ! | GTTTGAAACAAGATGCTGAA+AGG | + | chr4_2:52818494-52818513 | Msa0606450:CDS | 35.0% |
| TAACACCAATAGACTTTGCT+AGG | - | chr4_2:52818600-52818619 | None:intergenic | 35.0% | |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | chr4_2:52818607-52818626 | Msa0606450:CDS | 35.0% |
| !! | TTCGGCATTTTCTAAGAGTA+TGG | - | chr4_2:52818647-52818666 | None:intergenic | 35.0% |
| TCTTATACCTGATTAACTGC+AGG | - | chr4_2:52818676-52818695 | None:intergenic | 35.0% | |
| TGTCTGACATGTATCAGTAT+CGG | - | chr4_2:52818806-52818825 | None:intergenic | 35.0% | |
| !! | ATGTATTCGAGAAGTATCAG+TGG | - | chr4_2:52818884-52818903 | None:intergenic | 35.0% |
| ATGACAATTGTGTGGTTAGT+CGG | - | chr4_2:52818923-52818942 | None:intergenic | 35.0% | |
| TAGGAGGATACAAACTAAGT+TGG | + | chr4_2:52819102-52819121 | Msa0606450:CDS | 35.0% | |
| AGGAGGATACAAACTAAGTT+GGG | + | chr4_2:52819103-52819122 | Msa0606450:CDS | 35.0% | |
| TAAAATAATGAGCTGCACCT+GGG | - | chr4_2:52819195-52819214 | None:intergenic | 35.0% | |
| ATAAAATAATGAGCTGCACC+TGG | - | chr4_2:52819196-52819215 | None:intergenic | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | + | chr4_2:52819297-52819316 | Msa0606450:intron | 35.0% | |
| TGTTCTCACCTAACAATCTA+AGG | - | chr4_2:52819371-52819390 | None:intergenic | 35.0% | |
| TTATGCAGATAGCACTAAGA+TGG | + | chr4_2:52819507-52819526 | Msa0606450:intron | 35.0% | |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | chr4_2:52819555-52819574 | None:intergenic | 35.0% |
| CATTGTGAAAAGCTTCAACA+AGG | + | chr4_2:52819553-52819572 | Msa0606450:CDS | 35.0% | |
| ! | TAATGGACCTTACAAAACCT+TGG | + | chr4_2:52819691-52819710 | Msa0606450:CDS | 35.0% |
| GTTCACTTACATAAGGAACT+TGG | - | chr4_2:52819879-52819898 | None:intergenic | 35.0% | |
| ATGCTTGATGCCATTGAAAT+AGG | + | chr4_2:52818138-52818157 | Msa0606450:CDS | 35.0% | |
| ATGTCTGTAGCCTATTTCAA+TGG | - | chr4_2:52818151-52818170 | None:intergenic | 35.0% | |
| AAATTATGCTTGCTTCAGAG+TGG | - | chr4_2:52818334-52818353 | None:intergenic | 35.0% | |
| ! | AAATCTTGGATTGGAGTATG+TGG | + | chr4_2:52818444-52818463 | Msa0606450:CDS | 35.0% |
| TGGATCTCTATTTGATTCAC+TGG | + | chr4_2:52818464-52818483 | Msa0606450:CDS | 35.0% | |
| ! | GCATCTTGTTTCAAACTTAC+TGG | - | chr4_2:52818490-52818509 | None:intergenic | 35.0% |
| ! | GTTTGAAACAAGATGCTGAA+AGG | + | chr4_2:52818494-52818513 | Msa0606450:CDS | 35.0% |
| TAACACCAATAGACTTTGCT+AGG | - | chr4_2:52818600-52818619 | None:intergenic | 35.0% | |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | chr4_2:52818607-52818626 | Msa0606450:CDS | 35.0% |
| !! | TTCGGCATTTTCTAAGAGTA+TGG | - | chr4_2:52818647-52818666 | None:intergenic | 35.0% |
| TCTTATACCTGATTAACTGC+AGG | - | chr4_2:52818676-52818695 | None:intergenic | 35.0% | |
| TGTCTGACATGTATCAGTAT+CGG | - | chr4_2:52818806-52818825 | None:intergenic | 35.0% | |
| !! | ATGTATTCGAGAAGTATCAG+TGG | - | chr4_2:52818884-52818903 | None:intergenic | 35.0% |
| ATGACAATTGTGTGGTTAGT+CGG | - | chr4_2:52818923-52818942 | None:intergenic | 35.0% | |
| TAGGAGGATACAAACTAAGT+TGG | + | chr4_2:52819102-52819121 | Msa0606450:CDS | 35.0% | |
| AGGAGGATACAAACTAAGTT+GGG | + | chr4_2:52819103-52819122 | Msa0606450:CDS | 35.0% | |
| TAAAATAATGAGCTGCACCT+GGG | - | chr4_2:52819195-52819214 | None:intergenic | 35.0% | |
| ATAAAATAATGAGCTGCACC+TGG | - | chr4_2:52819196-52819215 | None:intergenic | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | + | chr4_2:52819297-52819316 | Msa0606450:intron | 35.0% | |
| TGTTCTCACCTAACAATCTA+AGG | - | chr4_2:52819371-52819390 | None:intergenic | 35.0% | |
| TTATGCAGATAGCACTAAGA+TGG | + | chr4_2:52819507-52819526 | Msa0606450:intron | 35.0% | |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | chr4_2:52819555-52819574 | None:intergenic | 35.0% |
| CATTGTGAAAAGCTTCAACA+AGG | + | chr4_2:52819553-52819572 | Msa0606450:CDS | 35.0% | |
| ! | TAATGGACCTTACAAAACCT+TGG | + | chr4_2:52819691-52819710 | Msa0606450:CDS | 35.0% |
| GTTCACTTACATAAGGAACT+TGG | - | chr4_2:52819879-52819898 | None:intergenic | 35.0% | |
| CAGAGGTGGTACTAAATTCA+GGG | + | chr4_2:52818061-52818080 | Msa0606450:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | + | chr4_2:52818081-52818100 | Msa0606450:CDS | 40.0% | |
| AAGATGCCAATGATAGGCTT+TGG | + | chr4_2:52818087-52818106 | Msa0606450:CDS | 40.0% | |
| !! | TCAAGCATAACTTGTTGAGG+AGG | - | chr4_2:52818126-52818145 | None:intergenic | 40.0% |
| !! | GCATCAAGCATAACTTGTTG+AGG | - | chr4_2:52818129-52818148 | None:intergenic | 40.0% |
| TTTGATACTGCTGCTCTCTA+TGG | + | chr4_2:52818171-52818190 | Msa0606450:CDS | 40.0% | |
| TATGGAACTGAAGAACCTCT+AGG | + | chr4_2:52818189-52818208 | Msa0606450:CDS | 40.0% | |
| ! | CTAAAGCTTTTGACACAGCT+TGG | - | chr4_2:52818215-52818234 | None:intergenic | 40.0% |
| !! | GTGTCAAAAGCTTTAGAGCT+AGG | + | chr4_2:52818219-52818238 | Msa0606450:CDS | 40.0% |
| ! | GTTCATCGCGATTTTTAACG+AGG | - | chr4_2:52818245-52818264 | None:intergenic | 40.0% |
| AGCATCAGTACACCATAACT+TGG | - | chr4_2:52818280-52818299 | None:intergenic | 40.0% | |
| AAAAGGAACATGGGAAGCTA+TGG | + | chr4_2:52818555-52818574 | Msa0606450:CDS | 40.0% | |
| ATTAACTGCAGGAGCGATTT+CGG | - | chr4_2:52818665-52818684 | None:intergenic | 40.0% | |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | chr4_2:52819101-52819120 | None:intergenic | 40.0% |
| GGAGGATACAAACTAAGTTG+GGG | + | chr4_2:52819104-52819123 | Msa0606450:CDS | 40.0% | |
| CAGAATTGGATTCTCCATCA+CGG | - | chr4_2:52819138-52819157 | None:intergenic | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | + | chr4_2:52819521-52819540 | Msa0606450:CDS | 40.0% | |
| TGAAAAGCTTCAACAAGGAG+AGG | + | chr4_2:52819558-52819577 | Msa0606450:CDS | 40.0% | |
| GGAACTTTCTTTGCTTCCAT+AGG | - | chr4_2:52818042-52818061 | None:intergenic | 40.0% | |
| CAGAGGTGGTACTAAATTCA+GGG | + | chr4_2:52818061-52818080 | Msa0606450:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | + | chr4_2:52818081-52818100 | Msa0606450:CDS | 40.0% | |
| AAGATGCCAATGATAGGCTT+TGG | + | chr4_2:52818087-52818106 | Msa0606450:CDS | 40.0% | |
| !! | TCAAGCATAACTTGTTGAGG+AGG | - | chr4_2:52818126-52818145 | None:intergenic | 40.0% |
| !! | GCATCAAGCATAACTTGTTG+AGG | - | chr4_2:52818129-52818148 | None:intergenic | 40.0% |
| TTTGATACTGCTGCTCTCTA+TGG | + | chr4_2:52818171-52818190 | Msa0606450:CDS | 40.0% | |
| TATGGAACTGAAGAACCTCT+AGG | + | chr4_2:52818189-52818208 | Msa0606450:CDS | 40.0% | |
| ! | CTAAAGCTTTTGACACAGCT+TGG | - | chr4_2:52818215-52818234 | None:intergenic | 40.0% |
| !! | GTGTCAAAAGCTTTAGAGCT+AGG | + | chr4_2:52818219-52818238 | Msa0606450:CDS | 40.0% |
| ! | GTTCATCGCGATTTTTAACG+AGG | - | chr4_2:52818245-52818264 | None:intergenic | 40.0% |
| AGCATCAGTACACCATAACT+TGG | - | chr4_2:52818280-52818299 | None:intergenic | 40.0% | |
| AAAAGGAACATGGGAAGCTA+TGG | + | chr4_2:52818555-52818574 | Msa0606450:CDS | 40.0% | |
| ATTAACTGCAGGAGCGATTT+CGG | - | chr4_2:52818665-52818684 | None:intergenic | 40.0% | |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | chr4_2:52819101-52819120 | None:intergenic | 40.0% |
| GGAGGATACAAACTAAGTTG+GGG | + | chr4_2:52819104-52819123 | Msa0606450:CDS | 40.0% | |
| CAGAATTGGATTCTCCATCA+CGG | - | chr4_2:52819138-52819157 | None:intergenic | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | + | chr4_2:52819521-52819540 | Msa0606450:CDS | 40.0% | |
| TGAAAAGCTTCAACAAGGAG+AGG | + | chr4_2:52819558-52819577 | Msa0606450:CDS | 40.0% | |
| GGAAGCAAAGAAAGTTCCAG+AGG | + | chr4_2:52818044-52818063 | Msa0606450:CDS | 45.0% | |
| AGCAAAGAAAGTTCCAGAGG+TGG | + | chr4_2:52818047-52818066 | Msa0606450:CDS | 45.0% | |
| CCTGAATTTAGTACCACCTC+TGG | - | chr4_2:52818063-52818082 | None:intergenic | 45.0% | |
| CCAGAGGTGGTACTAAATTC+AGG | + | chr4_2:52818060-52818079 | Msa0606450:CDS | 45.0% | |
| CCTGTTCCAAAGCCTATCAT+TGG | - | chr4_2:52818096-52818115 | None:intergenic | 45.0% | |
| !! | CCAATGATAGGCTTTGGAAC+AGG | + | chr4_2:52818093-52818112 | Msa0606450:CDS | 45.0% |
| !! | TTTTGAGAGCTGGGAGAACA+AGG | - | chr4_2:52818311-52818330 | None:intergenic | 45.0% |
| !!! | TCAGAGTGGTTTTGAGAGCT+GGG | - | chr4_2:52818320-52818339 | None:intergenic | 45.0% |
| !!! | TTCAGAGTGGTTTTGAGAGC+TGG | - | chr4_2:52818321-52818340 | None:intergenic | 45.0% |
| TTGGGCCTAGCAAAGTCTAT+TGG | + | chr4_2:52818592-52818611 | Msa0606450:CDS | 45.0% | |
| AATCGCTCCTGCAGTTAATC+AGG | + | chr4_2:52818666-52818685 | Msa0606450:CDS | 45.0% | |
| AGGTGGAAATGAACCCATCA+TGG | + | chr4_2:52819015-52819034 | Msa0606450:intron | 45.0% | |
| ATGAACCCATCATGGCAACA+AGG | + | chr4_2:52819023-52819042 | Msa0606450:CDS | 45.0% | |
| TGAACCCATCATGGCAACAA+GGG | + | chr4_2:52819024-52819043 | Msa0606450:CDS | 45.0% | |
| GTTTCCCTTGTTGCCATGAT+GGG | - | chr4_2:52819031-52819050 | None:intergenic | 45.0% | |
| AGTTTCCCTTGTTGCCATGA+TGG | - | chr4_2:52819032-52819051 | None:intergenic | 45.0% | |
| AGAGAGTTCTGCAAGCAGAA+AGG | + | chr4_2:52819053-52819072 | Msa0606450:CDS | 45.0% | |
| AAGGAATCCATGTGAGTGCA+TGG | + | chr4_2:52819072-52819091 | Msa0606450:CDS | 45.0% | |
| ATTGGATTCTCCATCACGGT+AGG | - | chr4_2:52819134-52819153 | None:intergenic | 45.0% | |
| TCTGCAATTTCGCGCAGAAT+TGG | - | chr4_2:52819152-52819171 | None:intergenic | 45.0% | |
| AATTCTGCGCGAAATTGCAG+AGG | + | chr4_2:52819151-52819170 | Msa0606450:CDS | 45.0% | |
| ! | TAGAAAGAAGAGTGTAGCCC+AGG | + | chr4_2:52819175-52819194 | Msa0606450:CDS | 45.0% |
| TGGACCTTACAAAACCTTGG+AGG | + | chr4_2:52819694-52819713 | Msa0606450:CDS | 45.0% | |
| !! | AGCTCCTCCAAGGTTTTGTA+AGG | - | chr4_2:52819701-52819720 | None:intergenic | 45.0% |
| GGAAGCAAAGAAAGTTCCAG+AGG | + | chr4_2:52818044-52818063 | Msa0606450:CDS | 45.0% | |
| AGCAAAGAAAGTTCCAGAGG+TGG | + | chr4_2:52818047-52818066 | Msa0606450:CDS | 45.0% | |
| CCTGAATTTAGTACCACCTC+TGG | - | chr4_2:52818063-52818082 | None:intergenic | 45.0% | |
| CCAGAGGTGGTACTAAATTC+AGG | + | chr4_2:52818060-52818079 | Msa0606450:CDS | 45.0% | |
| CCTGTTCCAAAGCCTATCAT+TGG | - | chr4_2:52818096-52818115 | None:intergenic | 45.0% | |
| !! | CCAATGATAGGCTTTGGAAC+AGG | + | chr4_2:52818093-52818112 | Msa0606450:CDS | 45.0% |
| !! | TTTTGAGAGCTGGGAGAACA+AGG | - | chr4_2:52818311-52818330 | None:intergenic | 45.0% |
| !!! | TCAGAGTGGTTTTGAGAGCT+GGG | - | chr4_2:52818320-52818339 | None:intergenic | 45.0% |
| !!! | TTCAGAGTGGTTTTGAGAGC+TGG | - | chr4_2:52818321-52818340 | None:intergenic | 45.0% |
| TTGGGCCTAGCAAAGTCTAT+TGG | + | chr4_2:52818592-52818611 | Msa0606450:CDS | 45.0% | |
| AATCGCTCCTGCAGTTAATC+AGG | + | chr4_2:52818666-52818685 | Msa0606450:CDS | 45.0% | |
| AGGTGGAAATGAACCCATCA+TGG | + | chr4_2:52819015-52819034 | Msa0606450:intron | 45.0% | |
| ATGAACCCATCATGGCAACA+AGG | + | chr4_2:52819023-52819042 | Msa0606450:CDS | 45.0% | |
| TGAACCCATCATGGCAACAA+GGG | + | chr4_2:52819024-52819043 | Msa0606450:CDS | 45.0% | |
| GTTTCCCTTGTTGCCATGAT+GGG | - | chr4_2:52819031-52819050 | None:intergenic | 45.0% | |
| AGTTTCCCTTGTTGCCATGA+TGG | - | chr4_2:52819032-52819051 | None:intergenic | 45.0% | |
| AGAGAGTTCTGCAAGCAGAA+AGG | + | chr4_2:52819053-52819072 | Msa0606450:CDS | 45.0% | |
| AAGGAATCCATGTGAGTGCA+TGG | + | chr4_2:52819072-52819091 | Msa0606450:CDS | 45.0% | |
| ATTGGATTCTCCATCACGGT+AGG | - | chr4_2:52819134-52819153 | None:intergenic | 45.0% | |
| TCTGCAATTTCGCGCAGAAT+TGG | - | chr4_2:52819152-52819171 | None:intergenic | 45.0% | |
| AATTCTGCGCGAAATTGCAG+AGG | + | chr4_2:52819151-52819170 | Msa0606450:CDS | 45.0% | |
| ! | TAGAAAGAAGAGTGTAGCCC+AGG | + | chr4_2:52819175-52819194 | Msa0606450:CDS | 45.0% |
| TGGACCTTACAAAACCTTGG+AGG | + | chr4_2:52819694-52819713 | Msa0606450:CDS | 45.0% | |
| !! | AGCTCCTCCAAGGTTTTGTA+AGG | - | chr4_2:52819701-52819720 | None:intergenic | 45.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr4_2:52818207-52818226 | None:intergenic | 50.0% | |
| ACAAAACCTTGGAGGAGCTG+TGG | + | chr4_2:52819702-52819721 | Msa0606450:CDS | 50.0% | |
| CAAAACCTTGGAGGAGCTGT+GGG | + | chr4_2:52819703-52819722 | Msa0606450:CDS | 50.0% | |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr4_2:52818207-52818226 | None:intergenic | 50.0% | |
| ACAAAACCTTGGAGGAGCTG+TGG | + | chr4_2:52819702-52819721 | Msa0606450:CDS | 50.0% | |
| CAAAACCTTGGAGGAGCTGT+GGG | + | chr4_2:52819703-52819722 | Msa0606450:CDS | 50.0% | |
| GTGGTGACCATGCACTCACA+TGG | - | chr4_2:52819082-52819101 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | + | chr4_2:52819083-52819102 | Msa0606450:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | chr4_2:52819086-52819105 | Msa0606450:CDS | 55.0% | |
| CAATGGGAATCGCTCCTTGC+TGG | - | chr4_2:52819538-52819557 | None:intergenic | 55.0% | |
| GTGGTGACCATGCACTCACA+TGG | - | chr4_2:52819082-52819101 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | + | chr4_2:52819083-52819102 | Msa0606450:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | chr4_2:52819086-52819105 | Msa0606450:CDS | 55.0% | |
| CAATGGGAATCGCTCCTTGC+TGG | - | chr4_2:52819538-52819557 | None:intergenic | 55.0% | |
| TTGGGGTTCGCCTACCGTGA+TGG | + | chr4_2:52819121-52819140 | Msa0606450:CDS | 60.0% | |
| ACCTTGGAGGAGCTGTGGGA+TGG | + | chr4_2:52819707-52819726 | Msa0606450:CDS | 60.0% | |
| ACCATCCCACAGCTCCTCCA+AGG | - | chr4_2:52819711-52819730 | None:intergenic | 60.0% | |
| TTGGGGTTCGCCTACCGTGA+TGG | + | chr4_2:52819121-52819140 | Msa0606450:CDS | 60.0% | |
| ACCTTGGAGGAGCTGTGGGA+TGG | + | chr4_2:52819707-52819726 | Msa0606450:CDS | 60.0% | |
| ACCATCCCACAGCTCCTCCA+AGG | - | chr4_2:52819711-52819730 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 52818042 | 52819935 | 52818042 | ID=Msa0606450;Name=Msa0606450 |
| chr4_2 | mRNA | 52818042 | 52819935 | 52818042 | ID=Msa0606450-mRNA-1;Parent=Msa0606450;Name=Msa0606450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.5|1|1|1|4|196|315 |
| chr4_2 | exon | 52818042 | 52818340 | 52818042 | ID=Msa0606450-mRNA-1:exon:12971;Parent=Msa0606450-mRNA-1 |
| chr4_2 | exon | 52818444 | 52818687 | 52818444 | ID=Msa0606450-mRNA-1:exon:12972;Parent=Msa0606450-mRNA-1 |
| chr4_2 | exon | 52819017 | 52819196 | 52819017 | ID=Msa0606450-mRNA-1:exon:12973;Parent=Msa0606450-mRNA-1 |
| chr4_2 | exon | 52819515 | 52819935 | 52819515 | ID=Msa0606450-mRNA-1:exon:12974;Parent=Msa0606450-mRNA-1 |
| chr4_2 | CDS | 52818042 | 52818340 | 52818042 | ID=Msa0606450-mRNA-1:cds;Parent=Msa0606450-mRNA-1 |
| chr4_2 | CDS | 52818444 | 52818687 | 52818444 | ID=Msa0606450-mRNA-1:cds;Parent=Msa0606450-mRNA-1 |
| chr4_2 | CDS | 52819017 | 52819196 | 52819017 | ID=Msa0606450-mRNA-1:cds;Parent=Msa0606450-mRNA-1 |
| chr4_2 | CDS | 52819515 | 52819739 | 52819515 | ID=Msa0606450-mRNA-1:cds;Parent=Msa0606450-mRNA-1 |
| chr4_2 | three_prime_UTR | 52819740 | 52819935 | 52819740 | ID=Msa0606450-mRNA-1:three_prime_utr;Parent=Msa0606450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
