AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606480 MtrunA17_Chr4g0035371 51.312 343 135 9 1 320 1 334 3.42e-97 295
Msa0606480 MtrunA17_Chr8g0380881 50.473 317 103 6 118 416 2 282 9.10e-77 246
Msa0606480 MtrunA17_Chr8g0380881 58.394 137 55 2 6 142 327 461 1.18e-40 150
Msa0606480 MtrunA17_Chr8g0380871 60.331 121 30 3 215 317 1 121 4.00e-37 132
Msa0606480 MtrunA17_Chr1g0186411 31.660 259 159 10 22 265 49 304 2.46e-22 100
Msa0606480 MtrunA17_Chr1g0168221 29.020 255 164 7 22 261 53 305 4.94e-22 99.4
Msa0606480 MtrunA17_Chr1g0186421 30.620 258 161 9 22 262 36 292 7.18e-22 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606480 AT5G52330.4 27.376 263 171 9 15 261 1 259 5.06e-19 89.0
Msa0606480 AT5G52330.3 27.376 263 171 9 15 261 1 259 5.06e-19 89.0
Msa0606480 AT5G52330.1 27.376 263 171 9 15 261 1 259 5.06e-19 89.0
Msa0606480 AT5G43560.2 31.390 223 124 6 50 253 90 302 2.16e-18 88.6
Msa0606480 AT5G43560.1 31.390 223 124 6 50 253 90 302 2.16e-18 88.6
Msa0606480 AT5G52330.2 28.108 185 126 4 82 261 26 208 1.58e-16 80.9
Msa0606480 AT1G04300.1 27.888 251 166 7 25 261 60 309 2.04e-16 82.4
Msa0606480 AT1G04300.4 28.947 228 151 6 44 261 64 290 9.57e-16 80.5
Msa0606480 AT1G04300.3 26.641 259 167 7 25 261 60 317 1.11e-14 77.0
Msa0606480 AT1G04300.5 29.730 185 124 4 82 261 96 279 1.65e-14 76.6
Msa0606480 AT1G04300.2 30.000 180 120 4 87 261 54 232 5.73e-14 74.7

Find 132 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCGAATTCGGAAAATTT+TGG 0.132613 4_2:+52852821 Msa0606480:CDS
TATATAGAAGACTCAAATTT+TGG 0.148345 4_2:-52851988 None:intergenic
CACTTTGGCTCAACAATTCT+TGG 0.170812 4_2:-52852213 None:intergenic
AAGAAGAGATTGATCTAAAA+AGG 0.201486 4_2:-52852020 None:intergenic
ATCTAAAATAAATTAGTATT+AGG 0.201680 4_2:-52852583 None:intergenic
TCATTTCTCTTTGGTGTAAT+TGG 0.202460 4_2:-52855950 None:intergenic
ACATTTGGTCCTTCGAAATT+TGG 0.203947 4_2:-52855342 None:intergenic
ATAAATTAGTATTAGGGTTT+AGG 0.244242 4_2:-52852576 None:intergenic
CTGAGAATGCTTTCAGATAT+AGG 0.259223 4_2:-52855583 None:intergenic
GTTTGGTTCAAGTATGATAT+TGG 0.262834 4_2:-52852184 None:intergenic
TTTCGAAGGACCAAATGTTT+TGG 0.266996 4_2:+52855347 Msa0606480:CDS
GGAAGAGGATTTGTCTGTTC+TGG 0.276453 4_2:+52856109 Msa0606480:CDS
GGAAGAGGATTTGTCTGTTC+TGG 0.276453 4_2:+52857738 Msa0606480:CDS
CTAATAACCTTATGCACTAT+TGG 0.279351 4_2:+52852364 Msa0606480:five_prime_UTR
TCTAAAATAAATTAGTATTA+GGG 0.293362 4_2:-52852582 None:intergenic
TTGCTCTTGACTGGATATTC+AGG 0.307001 4_2:+52855635 Msa0606480:CDS
ACACATTTATCATTTCTCTT+TGG 0.320922 4_2:-52855959 None:intergenic
TTGTATTGGTGGTATGAGAT+AGG 0.328758 4_2:+52852719 Msa0606480:five_prime_UTR
TCTACTTGAACATTATCCTT+AGG 0.329531 4_2:-52853375 None:intergenic
CTTGTTCTTCCCAAAACATT+TGG 0.329642 4_2:-52855357 None:intergenic
GAATTGCAGATTCAGATGTT+TGG 0.330521 4_2:+52853396 Msa0606480:CDS
ATGGATGCAGGCATAAAATT+CGG 0.336161 4_2:+52855834 Msa0606480:intron
TTTGACATCTCCTTTGCTAA+TGG 0.339763 4_2:+52855426 Msa0606480:CDS
TGAATCGAGTGCAGCAGATT+TGG 0.342133 4_2:+52856088 Msa0606480:CDS
ACCATCTTCTTCAACAACTT+TGG 0.352577 4_2:-52852847 None:intergenic
TACCAACAACCTCTGTAAAC+AGG 0.355045 4_2:-52855549 None:intergenic
TTTGGTTCAAGTATGATATT+GGG 0.356816 4_2:-52852183 None:intergenic
AATTGCAGATTCAGATGTTT+GGG 0.358939 4_2:+52853397 Msa0606480:CDS
TGGATGCAGGCATAAAATTC+GGG 0.367614 4_2:+52855835 Msa0606480:intron
TGAATCGATTGCAACAGATT+TGG 0.370685 4_2:+52857717 Msa0606480:CDS
TTGAAGTTGGAGAATATAAA+TGG 0.374642 4_2:+52852946 Msa0606480:CDS
ACAATTCTTGGAATGAGGTT+TGG 0.392315 4_2:-52852201 None:intergenic
TCGATTCCACTCAGTCTCTA+AGG 0.403616 4_2:+52853296 Msa0606480:CDS
ATAAACTTATTACATTAGAA+AGG 0.405503 4_2:+52852409 Msa0606480:five_prime_UTR
CTACTTGAACATTATCCTTA+GGG 0.406059 4_2:-52853374 None:intergenic
CTCAATACCAATAGTGCATA+AGG 0.411383 4_2:-52852371 None:intergenic
TTCGTAATCGTAATCGAATT+CGG 0.415184 4_2:+52852811 Msa0606480:CDS
GAATCCTCATATCGAGCAAT+CGG 0.420819 4_2:-52852915 None:intergenic
CTCAGTCTCTAAGGCTCACC+GGG 0.424130 4_2:+52853305 Msa0606480:CDS
AGTGTTTATGTATATTGTAT+TGG 0.425445 4_2:+52852705 Msa0606480:five_prime_UTR
AATGACTTGGTTATAAATGC+TGG 0.427903 4_2:+52856152 Msa0606480:CDS
AATGACTTGGTTATAAATGC+TGG 0.427903 4_2:+52857781 Msa0606480:CDS
TCCAAAGTTGTTGAAGAAGA+TGG 0.446156 4_2:+52852846 Msa0606480:CDS
CTTGAGCGTGCCCGTGAAGA+AGG 0.452362 4_2:+52853342 Msa0606480:CDS
GTTTACAGAGGTTGTTGGTA+GGG 0.458028 4_2:+52855552 Msa0606480:CDS
GATTCTAGAGTCATTGAAGT+TGG 0.458905 4_2:+52852933 Msa0606480:CDS
TGGAAATGTTTGCTCTTGAC+TGG 0.460540 4_2:+52855626 Msa0606480:CDS
TGTAACCTAGTATCTCTCCT+AGG 0.470925 4_2:-52852334 None:intergenic
TTGCAGTTTCCGTACTTTCG+TGG 0.470949 4_2:+52855309 Msa0606480:intron
GCTCAACAATTCTTGGAATG+AGG 0.471996 4_2:-52852206 None:intergenic
TGTATTGGTGGTATGAGATA+GGG 0.473194 4_2:+52852720 Msa0606480:five_prime_UTR
ACATATATACATACAACAAT+GGG 0.476719 4_2:+52852049 Msa0606480:five_prime_UTR
TACCTGTACAATTAGTTAGC+AGG 0.478278 4_2:-52853180 None:intergenic
TAAACTTATTACATTAGAAA+GGG 0.478646 4_2:+52852410 Msa0606480:five_prime_UTR
TGAAAGAAAGATGGAGGCGA+AGG 0.479885 4_2:+52852785 Msa0606480:exon
TACCTAGTATCATCAGATCA+AGG 0.482621 4_2:+52852080 Msa0606480:five_prime_UTR
CAGCTCGATACTTCTTTACA+AGG 0.495077 4_2:-52853606 None:intergenic
TACACTGCTAGATATCCCTT+TGG 0.495112 4_2:-52852130 None:intergenic
CACTTTCTTCCACGAAAGTA+CGG 0.497063 4_2:-52855318 None:intergenic
TGTTTACAGAGGTTGTTGGT+AGG 0.498059 4_2:+52855551 Msa0606480:CDS
TGAGGAAGATAGGTTTGGGT+TGG 0.498512 4_2:+52855513 Msa0606480:intron
TCCCTGTTTACAGAGGTTGT+TGG 0.499489 4_2:+52855547 Msa0606480:CDS
AGATCACAATGCCTCAGGTC+AGG 0.502340 4_2:+52857810 Msa0606480:CDS
ACTTCTTTACAAGGAGAGGC+TGG 0.502762 4_2:-52853597 None:intergenic
TGATAAATGTGTAGAAGAGA+TGG 0.504283 4_2:+52855970 Msa0606480:CDS
AATTAGTATTAGGGTTTAGG+TGG 0.505195 4_2:-52852573 None:intergenic
TTTGAATATGACCATCCAAT+GGG 0.507943 4_2:+52852244 Msa0606480:five_prime_UTR
GGTCAAGAAAACCTTCTTCA+CGG 0.511941 4_2:-52853353 None:intergenic
GAGAGCTGATCTTAATGACT+TGG 0.513006 4_2:+52856139 Msa0606480:CDS
GAGAGCTGATCTTAATGACT+TGG 0.513006 4_2:+52857768 Msa0606480:CDS
GTTTATGTATATTGTATTGG+TGG 0.514211 4_2:+52852708 Msa0606480:five_prime_UTR
GGGATATCTAGCAGTGTATG+TGG 0.515556 4_2:+52852135 Msa0606480:five_prime_UTR
AAACCCGATTGCTCGATATG+AGG 0.516947 4_2:+52852911 Msa0606480:CDS
AAAATCTGTGGACGTGCCAA+AGG 0.519714 4_2:+52852114 Msa0606480:five_prime_UTR
ACCTGTACAATTAGTTAGCA+GGG 0.522782 4_2:-52853179 None:intergenic
ACTCAGTCTCTAAGGCTCAC+CGG 0.523587 4_2:+52853304 Msa0606480:CDS
GCCCTTGATCTGATGATACT+AGG 0.523987 4_2:-52852082 None:intergenic
TGAAAAGAAGTCCAGAAGAA+AGG 0.529487 4_2:+52855889 Msa0606480:CDS
CACATATATACATACAACAA+TGG 0.530806 4_2:+52852048 Msa0606480:five_prime_UTR
GAAGATAGGTTTGGGTTGGT+CGG 0.531326 4_2:+52855517 Msa0606480:intron
TGTAGAAGAGATGGAGCAAA+CGG 0.533264 4_2:+52855979 Msa0606480:CDS
GTTTGAATTGAATTTGCCCT+AGG 0.534610 4_2:+52852317 Msa0606480:five_prime_UTR
AATCCTCATATCGAGCAATC+GGG 0.535556 4_2:-52852914 None:intergenic
GTCAAGAAAACCTTCTTCAC+GGG 0.545248 4_2:-52853352 None:intergenic
ATTGAAGATCACAATGCCTC+AGG 0.545760 4_2:+52856176 Msa0606480:CDS
ATTGAAGATCACAATGCCTC+AGG 0.545760 4_2:+52857805 Msa0606480:CDS
GATTGCAACAGATTTGGAAG+AGG 0.555828 4_2:+52857723 Msa0606480:CDS
TTTGCCCTAGGAGAGATACT+AGG 0.557518 4_2:+52852329 Msa0606480:five_prime_UTR
TGATCTTCAATCTCAACCAT+TGG 0.558146 4_2:-52857833 None:intergenic
AGATGTAATTCAGAAAGCCT+TGG 0.558336 4_2:+52855378 Msa0606480:CDS
CGATACTTCTTTACAAGGAG+AGG 0.559558 4_2:-52853601 None:intergenic
AAATCTGTGGACGTGCCAAA+GGG 0.563213 4_2:+52852115 Msa0606480:five_prime_UTR
AGCATCGCACTCACAGGCCA+TGG 0.563372 4_2:-52857856 None:intergenic
CATTGAAGCATCGCACTCAC+AGG 0.568292 4_2:-52857862 None:intergenic
CCCCTGCTAACTAATTGTAC+AGG 0.568299 4_2:+52853178 Msa0606480:CDS
CATAGCTCGTGAGATTGATG+AGG 0.572867 4_2:+52853060 Msa0606480:CDS
TATAATATCTCCATTAGCAA+AGG 0.573127 4_2:-52855436 None:intergenic
AATAAATGCTAACAGTACTA+CGG 0.576254 4_2:+52855474 Msa0606480:CDS
AAGAACATTTCTTCTCTGCA+AGG 0.577312 4_2:-52852280 None:intergenic
GTAACCTAGTATCTCTCCTA+GGG 0.580877 4_2:-52852333 None:intergenic
GGCATCATCTTCAAAATCTG+TGG 0.581034 4_2:+52852102 Msa0606480:five_prime_UTR
GAGTGCAGCAGATTTGGAAG+AGG 0.585111 4_2:+52856094 Msa0606480:CDS
CTAATGGAGATATTATACAT+TGG 0.587831 4_2:+52855442 Msa0606480:CDS
ACCTAGTATCATCAGATCAA+GGG 0.588343 4_2:+52852081 Msa0606480:five_prime_UTR
AATGCCTCAGGTCAGGCCAA+TGG 0.592426 4_2:+52857817 Msa0606480:CDS
TAGTGAGACCACCCATTGGA+TGG 0.596413 4_2:-52852255 None:intergenic
GGAATAGTGAGACCACCCAT+TGG 0.603922 4_2:-52852259 None:intergenic
ATAGCTCGTGAGATTGATGA+GGG 0.611915 4_2:+52853061 Msa0606480:CDS
TCAACCATTGGCCTGACCTG+AGG 0.612095 4_2:-52857821 None:intergenic
AATGATGATGATGAAGATTG+CGG 0.613940 4_2:+52857881 Msa0606480:three_prime_UTR
GAATATGACCATCCAATGGG+TGG 0.615494 4_2:+52852247 Msa0606480:five_prime_UTR
ACCAACAACCTCTGTAAACA+GGG 0.617003 4_2:-52855548 None:intergenic
AGAATTGTTGAGCCAAAGTG+AGG 0.628113 4_2:+52852216 Msa0606480:five_prime_UTR
GGATGCAGGCATAAAATTCG+GGG 0.630003 4_2:+52855836 Msa0606480:intron
AGAAAGTGACCAAATTTCGA+AGG 0.633181 4_2:+52855333 Msa0606480:CDS
GGATATCTAGCAGTGTATGT+GGG 0.634018 4_2:+52852136 Msa0606480:five_prime_UTR
CGTAAGAGTAGAGAGAGAAG+CGG 0.639894 4_2:+52852606 Msa0606480:five_prime_UTR
CAAGATGAAGTATATACCCC+CGG 0.639997 4_2:-52853323 None:intergenic
TGTGCCATCCCTGTTTACAG+AGG 0.644093 4_2:+52855540 Msa0606480:CDS
ACAACCTCTGTAAACAGGGA+TGG 0.649435 4_2:-52855544 None:intergenic
ACAAAGCAGAAACACAGGTA+GGG 0.650615 4_2:+52852631 Msa0606480:five_prime_UTR
CGGCGACAAAGCAGAAACAC+AGG 0.651202 4_2:+52852626 Msa0606480:five_prime_UTR
CTGACATAGACAATAATCCA+AGG 0.653035 4_2:+52853107 Msa0606480:CDS
CCTGTACAATTAGTTAGCAG+GGG 0.664701 4_2:-52853178 None:intergenic
GACAAAGCAGAAACACAGGT+AGG 0.670096 4_2:+52852630 Msa0606480:five_prime_UTR
GATGCAGGCATAAAATTCGG+GGG 0.674223 4_2:+52855837 Msa0606480:intron
GGTGAGCCTTAGAGACTGAG+TGG 0.677842 4_2:-52853302 None:intergenic
CTGTACAATTAGTTAGCAGG+GGG 0.693643 4_2:-52853177 None:intergenic
CAGTCTCTAAGGCTCACCGG+GGG 0.728033 4_2:+52853307 Msa0606480:CDS
ATGTGGGCGAGAAAATGAAG+CGG 0.742198 4_2:+52852152 Msa0606480:five_prime_UTR
GTTGAGATTGAAGATCACCA+TGG 0.743567 4_2:+52857839 Msa0606480:exon
TCAGTCTCTAAGGCTCACCG+GGG 0.764800 4_2:+52853306 Msa0606480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTATTTGTTTTATAATT+TGG - chr4_2:52852554-52852573 None:intergenic 10.0%
!!! TCTAAAATAAATTAGTATTA+GGG - chr4_2:52852585-52852604 None:intergenic 10.0%
!!! ATCTAAAATAAATTAGTATT+AGG - chr4_2:52852586-52852605 None:intergenic 10.0%
!! ATATATTAGTAAAATTCAAA+TGG - chr4_2:52853865-52853884 None:intergenic 10.0%
!!! ATTTGAATTTTACTAATATA+TGG + chr4_2:52853864-52853883 Msa0606480:intron 10.0%
!! ATTCAACAAAAAAAAAAAAA+CGG + chr4_2:52855231-52855250 Msa0606480:intron 10.0%
!! GTCAATAAATAAATTATATA+TGG - chr4_2:52857295-52857314 None:intergenic 10.0%
!! ATAAACTTATTACATTAGAA+AGG + chr4_2:52852409-52852428 Msa0606480:five_prime_UTR 15.0%
!! TAAACTTATTACATTAGAAA+GGG + chr4_2:52852410-52852429 Msa0606480:five_prime_UTR 15.0%
!!! TACTTCATTTTAAAACAATT+TGG + chr4_2:52852440-52852459 Msa0606480:five_prime_UTR 15.0%
!!! ATTTATTTTTATTGTCAATC+AGG - chr4_2:52853711-52853730 None:intergenic 15.0%
!! TGATTGACAATAAAAATAAA+TGG + chr4_2:52853710-52853729 Msa0606480:CDS 15.0%
!! ATTTAATTAATTGATGTGTA+TGG + chr4_2:52853834-52853853 Msa0606480:intron 15.0%
!!! ATATTTATTGTTTTTTGCTT+GGG - chr4_2:52853921-52853940 None:intergenic 15.0%
!!! AATATTTATTGTTTTTTGCT+TGG - chr4_2:52853922-52853941 None:intergenic 15.0%
!!! TTGTTTTGTTACTATTATTT+TGG - chr4_2:52854168-52854187 None:intergenic 15.0%
!!! ACTTTAAAGAATATATATGT+TGG + chr4_2:52854777-52854796 Msa0606480:intron 15.0%
!!! CTTTAAAGAATATATATGTT+GGG + chr4_2:52854778-52854797 Msa0606480:intron 15.0%
!! ATTAGATATAAGAAAATCTA+AGG + chr4_2:52854810-52854829 Msa0606480:intron 15.0%
!! TTCAACAAAAAAAAAAAAAC+GGG + chr4_2:52855232-52855251 Msa0606480:intron 15.0%
!! GTCAATAAATAAATGATATA+TGG - chr4_2:52855663-52855682 None:intergenic 15.0%
!! TCAACAAAAGTTAATATATT+TGG + chr4_2:52857223-52857242 Msa0606480:intron 15.0%
!! ATATAATTTATTTATTGACC+TGG + chr4_2:52857296-52857315 Msa0606480:intron 15.0%
!! TATAATTTATTTATTGACCT+GGG + chr4_2:52857297-52857316 Msa0606480:intron 15.0%
!!! TATATAGAAGACTCAAATTT+TGG - chr4_2:52851991-52852010 None:intergenic 20.0%
!! ACATATATACATACAACAAT+GGG + chr4_2:52852049-52852068 Msa0606480:five_prime_UTR 20.0%
!!! TTTGTTTTATAATTTGGAGT+GGG - chr4_2:52852548-52852567 None:intergenic 20.0%
!!! ATTTGTTTTATAATTTGGAG+TGG - chr4_2:52852549-52852568 None:intergenic 20.0%
!! ATAAATTAGTATTAGGGTTT+AGG - chr4_2:52852579-52852598 None:intergenic 20.0%
!! AGTGTTTATGTATATTGTAT+TGG + chr4_2:52852705-52852724 Msa0606480:five_prime_UTR 20.0%
!!! TTTTGATTTTGAAAGAAAGA+TGG + chr4_2:52852776-52852795 Msa0606480:exon 20.0%
!! ACAATAAAAATAAATGGCAA+AGG + chr4_2:52853716-52853735 Msa0606480:CDS 20.0%
!!! TGAATTTTACTAATATATGG+TGG + chr4_2:52853867-52853886 Msa0606480:intron 20.0%
!!! TATTTATTGTTTTTTGCTTG+GGG - chr4_2:52853920-52853939 None:intergenic 20.0%
!! AAAACAAATAAAAGAAGAAG+GGG - chr4_2:52854006-52854025 None:intergenic 20.0%
!! CAAAACAAATAAAAGAAGAA+GGG - chr4_2:52854007-52854026 None:intergenic 20.0%
!! ACAAAACAAATAAAAGAAGA+AGG - chr4_2:52854008-52854027 None:intergenic 20.0%
!! CAAAACAACATAACAAATTA+TGG + chr4_2:52854180-52854199 Msa0606480:intron 20.0%
!!! ATATTTTTTATGTGAACTGT+GGG + chr4_2:52854215-52854234 Msa0606480:intron 20.0%
!!! TATTGATTTGAGTAACTAAA+TGG - chr4_2:52854464-52854483 None:intergenic 20.0%
!! ATAAAATTAGTATGAGATCA+AGG - chr4_2:52854643-52854662 None:intergenic 20.0%
!!! TTAAGTTATGATTTTCCTAA+AGG + chr4_2:52854740-52854759 Msa0606480:intron 20.0%
!! AGATATCTTTAATATCCTTA+CGG + chr4_2:52854916-52854935 Msa0606480:intron 20.0%
!!! GTTAATTATTCCTATTTCTA+AGG - chr4_2:52855024-52855043 None:intergenic 20.0%
!! AAATAGGAATAATTAACTAC+AGG + chr4_2:52855027-52855046 Msa0606480:intron 20.0%
!! TTTGTTGAATAACAAAACAT+GGG - chr4_2:52855221-52855240 None:intergenic 20.0%
!!! TTTTGTTGAATAACAAAACA+TGG - chr4_2:52855222-52855241 None:intergenic 20.0%
!! TTAACAAGCAAAAAATTTGA+GGG - chr4_2:52855265-52855284 None:intergenic 20.0%
!! ATTAACAAGCAAAAAATTTG+AGG - chr4_2:52855266-52855285 None:intergenic 20.0%
!! ATATCATTTATTTATTGACC+TGG + chr4_2:52855664-52855683 Msa0606480:intron 20.0%
!! TATCATTTATTTATTGACCT+GGG + chr4_2:52855665-52855684 Msa0606480:intron 20.0%
!!! ATTATTTATTTAATGGATGC+AGG + chr4_2:52855822-52855841 Msa0606480:intron 20.0%
!! AAGAACTAATAAAGTAACAT+AGG - chr4_2:52856362-52856381 None:intergenic 20.0%
!! TAATTAGATGATTTAGTAAC+TGG + chr4_2:52856565-52856584 Msa0606480:intron 20.0%
!! TTTCAAATGAATTGTTCAAT+TGG - chr4_2:52856592-52856611 None:intergenic 20.0%
!! ATAATTATCAAAGAAAGTCA+TGG + chr4_2:52856686-52856705 Msa0606480:intron 20.0%
!!! AGTATTTTACTTGTGTTTTT+AGG - chr4_2:52856789-52856808 None:intergenic 20.0%
!! AAAATGGTATGTATAAAACA+TGG - chr4_2:52856979-52856998 None:intergenic 20.0%
!!! ATTTTTACTAGTTTTTACTC+TGG + chr4_2:52857176-52857195 Msa0606480:intron 20.0%
!!! ATTATTTATTTAATGGATGC+AGG + chr4_2:52855822-52855841 Msa0606480:intron 20.0%
! AGAAGAGATTGATCTAAAAA+GGG - chr4_2:52852022-52852041 None:intergenic 25.0%
! AAGAAGAGATTGATCTAAAA+AGG - chr4_2:52852023-52852042 None:intergenic 25.0%
! CACATATATACATACAACAA+TGG + chr4_2:52852048-52852067 Msa0606480:five_prime_UTR 25.0%
!! TTTGGTTCAAGTATGATATT+GGG - chr4_2:52852186-52852205 None:intergenic 25.0%
! ATTCAAAAATTTCCTCACTT+TGG - chr4_2:52852231-52852250 None:intergenic 25.0%
!!! TCAGAACATTTTTTGAAGAA+AGG + chr4_2:52852463-52852482 Msa0606480:five_prime_UTR 25.0%
!!! AACATTTTTTGAAGAAAGGA+GGG + chr4_2:52852467-52852486 Msa0606480:five_prime_UTR 25.0%
! GTTTATGTATATTGTATTGG+TGG + chr4_2:52852708-52852727 Msa0606480:five_prime_UTR 25.0%
!! TAATCGAATTCGGAAAATTT+TGG + chr4_2:52852821-52852840 Msa0606480:CDS 25.0%
! TTGAAGTTGGAGAATATAAA+TGG + chr4_2:52852946-52852965 Msa0606480:CDS 25.0%
! AAATATTGATATGCCAATAC+AGG + chr4_2:52853032-52853051 Msa0606480:intron 25.0%
! GGTCAATATAGTTAGTAATA+TGG - chr4_2:52853497-52853516 None:intergenic 25.0%
! TGACCAATAATTATAAGCAT+TGG + chr4_2:52853512-52853531 Msa0606480:intron 25.0%
! GACCAATAATTATAAGCATT+GGG + chr4_2:52853513-52853532 Msa0606480:intron 25.0%
!!! ATTTATTGTTTTTTGCTTGG+GGG - chr4_2:52853919-52853938 None:intergenic 25.0%
! AAACAAATAAAAGAAGAAGG+GGG - chr4_2:52854005-52854024 None:intergenic 25.0%
! AACAACATAACAAATTATGG+TGG + chr4_2:52854183-52854202 Msa0606480:intron 25.0%
!!! GATATTTTTTATGTGAACTG+TGG + chr4_2:52854214-52854233 Msa0606480:intron 25.0%
! TAACATTGCAGTAGTTATAA+GGG - chr4_2:52854248-52854267 None:intergenic 25.0%
! TTAACATTGCAGTAGTTATA+AGG - chr4_2:52854249-52854268 None:intergenic 25.0%
! TGTGTAATCTTACTATTAGA+CGG + chr4_2:52854613-52854632 Msa0606480:intron 25.0%
! ACATGTAAGAGTAAAACATA+AGG + chr4_2:52854860-52854879 Msa0606480:intron 25.0%
! CATGTAAGAGTAAAACATAA+GGG + chr4_2:52854861-52854880 Msa0606480:intron 25.0%
! AAATGTTGTACAAACTTTGT+AGG + chr4_2:52855090-52855109 Msa0606480:intron 25.0%
!! AAAGCATCAAATACAAACTT+AGG - chr4_2:52855118-52855137 None:intergenic 25.0%
! TATAATATCTCCATTAGCAA+AGG - chr4_2:52855439-52855458 None:intergenic 25.0%
! CTAATGGAGATATTATACAT+TGG + chr4_2:52855442-52855461 Msa0606480:CDS 25.0%
! AATAAATGCTAACAGTACTA+CGG + chr4_2:52855474-52855493 Msa0606480:CDS 25.0%
! ACACATTTATCATTTCTCTT+TGG - chr4_2:52855962-52855981 None:intergenic 25.0%
!!! TGATTTTGGCTATAAATAGA+TGG + chr4_2:52856008-52856027 Msa0606480:intron 25.0%
!!! GATTTTGGCTATAAATAGAT+GGG + chr4_2:52856009-52856028 Msa0606480:intron 25.0%
! GTAAAGACTAAATCAACAAA+CGG - chr4_2:52856392-52856411 None:intergenic 25.0%
! AGTGCTTTAACATGTTTATT+AGG - chr4_2:52856729-52856748 None:intergenic 25.0%
!! AGTTCGAAATTTGTTCAAAA+TGG - chr4_2:52856995-52857014 None:intergenic 25.0%
! TTTGAACAAATTTCGAACTT+AGG + chr4_2:52856996-52857015 Msa0606480:intron 25.0%
! GTATTGGAAATTTCAACAAT+AGG - chr4_2:52857030-52857049 None:intergenic 25.0%
! TCCTATTTATAAGAGAAAGT+TGG + chr4_2:52857199-52857218 Msa0606480:intron 25.0%
! CCTATTTATAAGAGAAAGTT+GGG + chr4_2:52857200-52857219 Msa0606480:intron 25.0%
! TTATCATTTCTCTTTGCAAT+TGG - chr4_2:52857585-52857604 None:intergenic 25.0%
!!! GTTTAGTTTTGTTTAGTTTG+TGG + chr4_2:52857998-52858017 Msa0606480:three_prime_UTR 25.0%
! GTTTGGTTCAAGTATGATAT+TGG - chr4_2:52852187-52852206 None:intergenic 30.0%
! TTTTGAATATGACCATCCAA+TGG + chr4_2:52852243-52852262 Msa0606480:five_prime_UTR 30.0%
TTTGAATATGACCATCCAAT+GGG + chr4_2:52852244-52852263 Msa0606480:five_prime_UTR 30.0%
CTAATAACCTTATGCACTAT+TGG + chr4_2:52852364-52852383 Msa0606480:five_prime_UTR 30.0%
!!! GAACATTTTTTGAAGAAAGG+AGG + chr4_2:52852466-52852485 Msa0606480:five_prime_UTR 30.0%
AATTAGTATTAGGGTTTAGG+TGG - chr4_2:52852576-52852595 None:intergenic 30.0%
!! TGATTTTGAAAGAAAGATGG+AGG + chr4_2:52852779-52852798 Msa0606480:exon 30.0%
TTCGTAATCGTAATCGAATT+CGG + chr4_2:52852811-52852830 Msa0606480:CDS 30.0%
! AGTGCATAAATTTTCAACCT+TGG - chr4_2:52853127-52853146 None:intergenic 30.0%
CTACTTGAACATTATCCTTA+GGG - chr4_2:52853377-52853396 None:intergenic 30.0%
TCTACTTGAACATTATCCTT+AGG - chr4_2:52853378-52853397 None:intergenic 30.0%
AATTGCAGATTCAGATGTTT+GGG + chr4_2:52853397-52853416 Msa0606480:CDS 30.0%
CACCCAATGCTTATAATTAT+TGG - chr4_2:52853518-52853537 None:intergenic 30.0%
!!! TTTATTGTTTTTTGCTTGGG+GGG - chr4_2:52853918-52853937 None:intergenic 30.0%
TTAGCATGTCTTAGTTGATT+CGG + chr4_2:52853964-52853983 Msa0606480:intron 30.0%
!!! TTGTTTTTGAAGCAATGTCT+TGG + chr4_2:52854024-52854043 Msa0606480:intron 30.0%
CATCATATTCGAATGAAAGA+GGG - chr4_2:52854081-52854100 None:intergenic 30.0%
TCATCATATTCGAATGAAAG+AGG - chr4_2:52854082-52854101 None:intergenic 30.0%
ACTACTGCAATGTTAAACAA+TGG + chr4_2:52854253-52854272 Msa0606480:intron 30.0%
! TAATAATCTCCTTGCTGTAA+TGG + chr4_2:52854282-52854301 Msa0606480:intron 30.0%
TTGTAAATTCCATTACAGCA+AGG - chr4_2:52854294-52854313 None:intergenic 30.0%
AAAGAAGGGAAAATGTGAAA+CGG - chr4_2:52854518-52854537 None:intergenic 30.0%
TATAAGAGAAGGGGTAAAAT+GGG - chr4_2:52854554-52854573 None:intergenic 30.0%
ACATATGTGTATAAGAGAAG+GGG - chr4_2:52854563-52854582 None:intergenic 30.0%
GACATATGTGTATAAGAGAA+GGG - chr4_2:52854564-52854583 None:intergenic 30.0%
TGACATATGTGTATAAGAGA+AGG - chr4_2:52854565-52854584 None:intergenic 30.0%
TCTCTTATACACATATGTCA+AGG + chr4_2:52854565-52854584 Msa0606480:intron 30.0%
GTTCATAAGTATGTAGTCAT+AGG + chr4_2:52854692-52854711 Msa0606480:intron 30.0%
TTTCCTAAAGGATTGAAACT+TGG + chr4_2:52854752-52854771 Msa0606480:intron 30.0%
TTACCAAGTTTCAATCCTTT+AGG - chr4_2:52854758-52854777 None:intergenic 30.0%
TTACTCTTACATGTACATCA+TGG - chr4_2:52854854-52854873 None:intergenic 30.0%
!! AGTGGACTCATTTTATTTAG+TGG - chr4_2:52854953-52854972 None:intergenic 30.0%
!!! ACAATTCACGTTTTAGTTAG+TGG - chr4_2:52854971-52854990 None:intergenic 30.0%
ACTAACTAAAACGTGAATTG+TGG + chr4_2:52854970-52854989 Msa0606480:intron 30.0%
AGGAATAATTAACTACAGGA+TGG + chr4_2:52855031-52855050 Msa0606480:intron 30.0%
GGAATAATTAACTACAGGAT+GGG + chr4_2:52855032-52855051 Msa0606480:intron 30.0%
TACAAAAAAGTGATTCACCA+AGG - chr4_2:52855398-52855417 None:intergenic 30.0%
!!! GTGAATCACTTTTTTGTAGA+TGG + chr4_2:52855400-52855419 Msa0606480:CDS 30.0%
TTGTCAAAATTGAGGAAGAT+AGG + chr4_2:52855503-52855522 Msa0606480:intron 30.0%
AAAATTGAGGAAGATAGGTT+TGG + chr4_2:52855508-52855527 Msa0606480:intron 30.0%
AAATTGAGGAAGATAGGTTT+GGG + chr4_2:52855509-52855528 Msa0606480:intron 30.0%
AATATAAAGAAACAAGACCC+AGG - chr4_2:52855685-52855704 None:intergenic 30.0%
ATACAAGTATGATGCAATAG+TGG + chr4_2:52855746-52855765 Msa0606480:intron 30.0%
CAGAAGAAAGGTGAAAAAAA+CGG + chr4_2:52855901-52855920 Msa0606480:CDS 30.0%
AGAAGAAAGGTGAAAAAAAC+GGG + chr4_2:52855902-52855921 Msa0606480:CDS 30.0%
! TCATTTCTCTTTGGTGTAAT+TGG - chr4_2:52855953-52855972 None:intergenic 30.0%
TGATAAATGTGTAGAAGAGA+TGG + chr4_2:52855970-52855989 Msa0606480:CDS 30.0%
TACTTGATAGAAACTGTTTG+TGG + chr4_2:52856051-52856070 Msa0606480:intron 30.0%
!! AATGACTTGGTTATAAATGC+TGG + chr4_2:52856152-52856171 Msa0606480:CDS 30.0%
TGATCTTCAATCTAAACCAT+TGG - chr4_2:52856207-52856226 None:intergenic 30.0%
! CAGTTTTCTTGAGATTATCT+TGG + chr4_2:52856411-52856430 Msa0606480:intron 30.0%
TTAAACCCAAAAAATATCCC+AGG - chr4_2:52856548-52856567 None:intergenic 30.0%
! GTGGATATTGTGATTTTGAA+AGG + chr4_2:52856644-52856663 Msa0606480:intron 30.0%
!! AAATACTAATTTGCTCTCAG+AGG + chr4_2:52856802-52856821 Msa0606480:intron 30.0%
CCCAACTTTCTCTTATAAAT+AGG - chr4_2:52857203-52857222 None:intergenic 30.0%
AATATAAAGAAACAAGACCC+AGG - chr4_2:52855685-52855704 None:intergenic 30.0%
ATGGATGCAGGAATAAAATT+CGG + chr4_2:52857466-52857485 Msa0606480:intron 30.0%
CAGGAAAAAAGTGAAAGAAA+CGG + chr4_2:52857533-52857552 Msa0606480:intron 30.0%
AGGAAAAAAGTGAAAGAAAC+GGG + chr4_2:52857534-52857553 Msa0606480:intron 30.0%
! GGGAAAAACTATTTCTTTGA+TGG + chr4_2:52857554-52857573 Msa0606480:intron 30.0%
TGATAAATGTGTAGAAGAGA+AGG + chr4_2:52855970-52855989 Msa0606480:CDS 30.0%
!!! TGATTTTGGCTGTAAATAGA+TGG + chr4_2:52857637-52857656 Msa0606480:intron 30.0%
!!! GATTTTGGCTGTAAATAGAT+GGG + chr4_2:52857638-52857657 Msa0606480:intron 30.0%
TACTTGATAGAAACTGTTTG+TGG + chr4_2:52856051-52856070 Msa0606480:intron 30.0%
!! AATGACTTGGTTATAAATGC+TGG + chr4_2:52856152-52856171 Msa0606480:CDS 30.0%
! AATGATGATGATGAAGATTG+CGG + chr4_2:52857881-52857900 Msa0606480:three_prime_UTR 30.0%
TACCTAGTATCATCAGATCA+AGG + chr4_2:52852080-52852099 Msa0606480:five_prime_UTR 35.0%
ACCTAGTATCATCAGATCAA+GGG + chr4_2:52852081-52852100 Msa0606480:five_prime_UTR 35.0%
ACAATTCTTGGAATGAGGTT+TGG - chr4_2:52852204-52852223 None:intergenic 35.0%
AAGAACATTTCTTCTCTGCA+AGG - chr4_2:52852283-52852302 None:intergenic 35.0%
GTTTGAATTGAATTTGCCCT+AGG + chr4_2:52852317-52852336 Msa0606480:five_prime_UTR 35.0%
CTCAATACCAATAGTGCATA+AGG - chr4_2:52852374-52852393 None:intergenic 35.0%
! TTGTATTGGTGGTATGAGAT+AGG + chr4_2:52852719-52852738 Msa0606480:five_prime_UTR 35.0%
! TGTATTGGTGGTATGAGATA+GGG + chr4_2:52852720-52852739 Msa0606480:five_prime_UTR 35.0%
!!! AGATAGGGTTTTGTTTCAAC+AGG + chr4_2:52852735-52852754 Msa0606480:five_prime_UTR 35.0%
TCCAAAGTTGTTGAAGAAGA+TGG + chr4_2:52852846-52852865 Msa0606480:CDS 35.0%
ACCATCTTCTTCAACAACTT+TGG - chr4_2:52852850-52852869 None:intergenic 35.0%
!! GATTCTAGAGTCATTGAAGT+TGG + chr4_2:52852933-52852952 Msa0606480:CDS 35.0%
CTGACATAGACAATAATCCA+AGG + chr4_2:52853107-52853126 Msa0606480:CDS 35.0%
ACCTGTACAATTAGTTAGCA+GGG - chr4_2:52853182-52853201 None:intergenic 35.0%
TACCTGTACAATTAGTTAGC+AGG - chr4_2:52853183-52853202 None:intergenic 35.0%
TGCTAACTAATTGTACAGGT+AGG + chr4_2:52853182-52853201 Msa0606480:intron 35.0%
GAATTGCAGATTCAGATGTT+TGG + chr4_2:52853396-52853415 Msa0606480:CDS 35.0%
CAATCTCATTCTACTGTTGT+TGG + chr4_2:52853448-52853467 Msa0606480:intron 35.0%
CAATCATACAATGAGTTGCA+TGG - chr4_2:52853551-52853570 None:intergenic 35.0%
AATATGATGATATGCCCTGA+TGG + chr4_2:52854092-52854111 Msa0606480:intron 35.0%
! ATGCTGATCTGTTTGAAATC+AGG - chr4_2:52854118-52854137 None:intergenic 35.0%
CTGCAATGTTAAACAATGGA+TGG + chr4_2:52854257-52854276 Msa0606480:intron 35.0%
TGAGTAACTAAATGGACACA+TGG - chr4_2:52854456-52854475 None:intergenic 35.0%
! ATGTGAAACGGTTAGTCAAT+GGG - chr4_2:52854506-52854525 None:intergenic 35.0%
! AATGTGAAACGGTTAGTCAA+TGG - chr4_2:52854507-52854526 None:intergenic 35.0%
GAAGCAAAGTAGAGAAAGAA+GGG - chr4_2:52854532-52854551 None:intergenic 35.0%
GTATAAGAGAAGGGGTAAAA+TGG - chr4_2:52854555-52854574 None:intergenic 35.0%
TTACACTACACAAGTTCACT+AGG - chr4_2:52854670-52854689 None:intergenic 35.0%
!! CACACAATTCGTCATTTTCT+AGG - chr4_2:52854719-52854738 None:intergenic 35.0%
ACTAAAACGTGAATTGTGGA+AGG + chr4_2:52854974-52854993 Msa0606480:intron 35.0%
!! TATTTCTAAGGAAGTGCTAG+TGG - chr4_2:52855012-52855031 None:intergenic 35.0%
ACTAGCACTTCCTTAGAAAT+AGG + chr4_2:52855011-52855030 Msa0606480:intron 35.0%
AGAAAGTGACCAAATTTCGA+AGG + chr4_2:52855333-52855352 Msa0606480:CDS 35.0%
ACATTTGGTCCTTCGAAATT+TGG - chr4_2:52855345-52855364 None:intergenic 35.0%
! TTTCGAAGGACCAAATGTTT+TGG + chr4_2:52855347-52855366 Msa0606480:CDS 35.0%
! TTCGAAGGACCAAATGTTTT+GGG + chr4_2:52855348-52855367 Msa0606480:CDS 35.0%
CTTGTTCTTCCCAAAACATT+TGG - chr4_2:52855360-52855379 None:intergenic 35.0%
AGATGTAATTCAGAAAGCCT+TGG + chr4_2:52855378-52855397 Msa0606480:CDS 35.0%
TTTGACATCTCCTTTGCTAA+TGG + chr4_2:52855426-52855445 Msa0606480:CDS 35.0%
GGCTAAGTTTGTCAAAATTG+AGG + chr4_2:52855495-52855514 Msa0606480:intron 35.0%
CTGAGAATGCTTTCAGATAT+AGG - chr4_2:52855586-52855605 None:intergenic 35.0%
!!! AGAGTTTTGTTGCATGATAG+TGG + chr4_2:52855606-52855625 Msa0606480:CDS 35.0%
TATGATGCAATAGTGGTTCT+AGG + chr4_2:52855753-52855772 Msa0606480:intron 35.0%
ATGGATGCAGGCATAAAATT+CGG + chr4_2:52855834-52855853 Msa0606480:intron 35.0%
TGAAAAGAAGTCCAGAAGAA+AGG + chr4_2:52855889-52855908 Msa0606480:CDS 35.0%
!!! CGTTTTTTTCACCTTTCTTC+TGG - chr4_2:52855903-52855922 None:intergenic 35.0%
! GCAAACGGTAAACTTGATTT+TGG + chr4_2:52855994-52856013 Msa0606480:intron 35.0%
GTTTAGATTGAAGATCACCA+TGG + chr4_2:52856210-52856229 Msa0606480:intron 35.0%
! TCCATGCATGTTTTCTACTT+TGG + chr4_2:52856438-52856457 Msa0606480:intron 35.0%
ACCAAAGTAGAAAACATGCA+TGG - chr4_2:52856442-52856461 None:intergenic 35.0%
!!! TACTGTCCTGGGATATTTTT+TGG + chr4_2:52856539-52856558 Msa0606480:intron 35.0%
!!! ACTGTCCTGGGATATTTTTT+GGG + chr4_2:52856540-52856559 Msa0606480:intron 35.0%
ACTGTGAAATAAGTGTGTAC+AGG + chr4_2:52856622-52856641 Msa0606480:intron 35.0%
TGAAAGGTTTCTTGTGTAAC+TGG + chr4_2:52856660-52856679 Msa0606480:intron 35.0%
TCAAAGAAAGTCATGGTTGT+TGG + chr4_2:52856693-52856712 Msa0606480:intron 35.0%
CTACTTAAGCAAATTGCTTG+AGG + chr4_2:52857112-52857131 Msa0606480:intron 35.0%
CCAGTCAAGAGCAAATATTT+GGG - chr4_2:52857261-52857280 None:intergenic 35.0%
TCCAGTCAAGAGCAAATATT+TGG - chr4_2:52857262-52857281 None:intergenic 35.0%
TGTGATGCAATAGTGTTTCT+AGG + chr4_2:52857385-52857404 Msa0606480:intron 35.0%
!!! CAATAGTGTTTCTAGGCTTT+TGG + chr4_2:52857392-52857411 Msa0606480:intron 35.0%
TGGATGCAGGAATAAAATTC+GGG + chr4_2:52857467-52857486 Msa0606480:intron 35.0%
ATCGAACTGAAAAAAAGTCC+AGG + chr4_2:52857514-52857533 Msa0606480:intron 35.0%
!!! CGTTTCTTTCACTTTTTTCC+TGG - chr4_2:52857535-52857554 None:intergenic 35.0%
! GCAAACGGTAAACTTGATTT+TGG + chr4_2:52855994-52856013 Msa0606480:intron 35.0%
TGAATCGATTGCAACAGATT+TGG + chr4_2:52857717-52857736 Msa0606480:CDS 35.0%
TGATCTTCAATCTCAACCAT+TGG - chr4_2:52857836-52857855 None:intergenic 35.0%
!!! GTTTTGTTTAGTTTGTGGCT+TGG + chr4_2:52858003-52858022 Msa0606480:three_prime_UTR 35.0%
GGCATCATCTTCAAAATCTG+TGG + chr4_2:52852102-52852121 Msa0606480:five_prime_UTR 40.0%
TACACTGCTAGATATCCCTT+TGG - chr4_2:52852133-52852152 None:intergenic 40.0%
GGATATCTAGCAGTGTATGT+GGG + chr4_2:52852136-52852155 Msa0606480:five_prime_UTR 40.0%
GCTCAACAATTCTTGGAATG+AGG - chr4_2:52852209-52852228 None:intergenic 40.0%
! CACTTTGGCTCAACAATTCT+TGG - chr4_2:52852216-52852235 None:intergenic 40.0%
AGAATTGTTGAGCCAAAGTG+AGG + chr4_2:52852216-52852235 Msa0606480:five_prime_UTR 40.0%
GTAACCTAGTATCTCTCCTA+GGG - chr4_2:52852336-52852355 None:intergenic 40.0%
TGTAACCTAGTATCTCTCCT+AGG - chr4_2:52852337-52852356 None:intergenic 40.0%
ACAAAGCAGAAACACAGGTA+GGG + chr4_2:52852631-52852650 Msa0606480:five_prime_UTR 40.0%
AATCCTCATATCGAGCAATC+GGG - chr4_2:52852917-52852936 None:intergenic 40.0%
GAATCCTCATATCGAGCAAT+CGG - chr4_2:52852918-52852937 None:intergenic 40.0%
GAGCTATGAAAGTCCTGTAT+TGG - chr4_2:52853048-52853067 None:intergenic 40.0%
ATAGCTCGTGAGATTGATGA+GGG + chr4_2:52853061-52853080 Msa0606480:CDS 40.0%
CTGTACAATTAGTTAGCAGG+GGG - chr4_2:52853180-52853199 None:intergenic 40.0%
CCTGTACAATTAGTTAGCAG+GGG - chr4_2:52853181-52853200 None:intergenic 40.0%
CAAGATGAAGTATATACCCC+CGG - chr4_2:52853326-52853345 None:intergenic 40.0%
GTCAAGAAAACCTTCTTCAC+GGG - chr4_2:52853355-52853374 None:intergenic 40.0%
GGTCAAGAAAACCTTCTTCA+CGG - chr4_2:52853356-52853375 None:intergenic 40.0%
! AGAAGGTTTTCTTGACCCTA+AGG + chr4_2:52853359-52853378 Msa0606480:CDS 40.0%
CGATACTTCTTTACAAGGAG+AGG - chr4_2:52853604-52853623 None:intergenic 40.0%
CAGCTCGATACTTCTTTACA+AGG - chr4_2:52853609-52853628 None:intergenic 40.0%
! TGTTTGAAATCAGGCCATCA+GGG - chr4_2:52854109-52854128 None:intergenic 40.0%
AGAACCATTCTCATCTCAGA+GGG - chr4_2:52854346-52854365 None:intergenic 40.0%
!!! GAAGAAGAGCATACTGGTTT+TGG - chr4_2:52854394-52854413 None:intergenic 40.0%
GAGGAAAAGATTGACCGAAA+GGG - chr4_2:52854420-52854439 None:intergenic 40.0%
TAAATGGACACATGGAAGCA+GGG - chr4_2:52854448-52854467 None:intergenic 40.0%
GGAAGCAAAGTAGAGAAAGA+AGG - chr4_2:52854533-52854552 None:intergenic 40.0%
ATATGTCAAGGATACTTCCC+AGG + chr4_2:52854577-52854596 Msa0606480:intron 40.0%
TATGTCAAGGATACTTCCCA+GGG + chr4_2:52854578-52854597 Msa0606480:intron 40.0%
CACACAATTTGATATGCCCT+GGG - chr4_2:52854597-52854616 None:intergenic 40.0%
ACACACAATTTGATATGCCC+TGG - chr4_2:52854598-52854617 None:intergenic 40.0%
CACTTTCTTCCACGAAAGTA+CGG - chr4_2:52855321-52855340 None:intergenic 40.0%
ACCAACAACCTCTGTAAACA+GGG - chr4_2:52855551-52855570 None:intergenic 40.0%
TACCAACAACCTCTGTAAAC+AGG - chr4_2:52855552-52855571 None:intergenic 40.0%
TGTTTACAGAGGTTGTTGGT+AGG + chr4_2:52855551-52855570 Msa0606480:CDS 40.0%
GTTTACAGAGGTTGTTGGTA+GGG + chr4_2:52855552-52855571 Msa0606480:CDS 40.0%
TGGAAATGTTTGCTCTTGAC+TGG + chr4_2:52855626-52855645 Msa0606480:CDS 40.0%
TTGCTCTTGACTGGATATTC+AGG + chr4_2:52855635-52855654 Msa0606480:CDS 40.0%
!!! CAATAGTGGTTCTAGGCTTT+TGG + chr4_2:52855760-52855779 Msa0606480:intron 40.0%
TGGATGCAGGCATAAAATTC+GGG + chr4_2:52855835-52855854 Msa0606480:intron 40.0%
TGTAGAAGAGATGGAGCAAA+CGG + chr4_2:52855979-52855998 Msa0606480:CDS 40.0%
GAGAGCTGATCTTAATGACT+TGG + chr4_2:52856139-52856158 Msa0606480:CDS 40.0%
ATTGAAGATCACAATGCCTC+AGG + chr4_2:52856176-52856195 Msa0606480:CDS 40.0%
GAGCACATTGTCATTCTTGT+TGG + chr4_2:52856474-52856493 Msa0606480:intron 40.0%
TAGCAATTAGCACCTAGCTA+GGG + chr4_2:52856509-52856528 Msa0606480:intron 40.0%
GTGAAATAAGTGTGTACAGG+TGG + chr4_2:52856625-52856644 Msa0606480:intron 40.0%
AGAGGTAGTTAACTACCGTT+GGG + chr4_2:52856820-52856839 Msa0606480:intron 40.0%
CAGCGGTAATTAACTAATGC+CGG - chr4_2:52856850-52856869 None:intergenic 40.0%
GTTAACTGTTGTTGCGTTCT+TGG + chr4_2:52856908-52856927 Msa0606480:intron 40.0%
TCAAGTACATGTGCGAGTAT+TGG - chr4_2:52857046-52857065 None:intergenic 40.0%
AATTGCTTGAGGACAAGCAA+TGG + chr4_2:52857123-52857142 Msa0606480:intron 40.0%
AGGACAAGCAATGGTTAAGT+AGG + chr4_2:52857132-52857151 Msa0606480:intron 40.0%
ACAAGCAATGGTTAAGTAGG+AGG + chr4_2:52857135-52857154 Msa0606480:intron 40.0%
CCCAAATATTTGCTCTTGAC+TGG + chr4_2:52857258-52857277 Msa0606480:intron 40.0%
TTGCTCTTGACTGGATATTC+AGG + chr4_2:52855635-52855654 Msa0606480:CDS 40.0%
GGATGCAGGAATAAAATTCG+GGG + chr4_2:52857468-52857487 Msa0606480:intron 40.0%
GATGCAGGAATAAAATTCGG+GGG + chr4_2:52857469-52857488 Msa0606480:intron 40.0%
TGTAGAAGAGAAGGAGCAAA+CGG + chr4_2:52857608-52857627 Msa0606480:intron 40.0%
GATTGCAACAGATTTGGAAG+AGG + chr4_2:52857723-52857742 Msa0606480:CDS 40.0%
GAGAGCTGATCTTAATGACT+TGG + chr4_2:52856139-52856158 Msa0606480:CDS 40.0%
ATTGAAGATCACAATGCCTC+AGG + chr4_2:52856176-52856195 Msa0606480:CDS 40.0%
GTTGAGATTGAAGATCACCA+TGG + chr4_2:52857839-52857858 Msa0606480:exon 40.0%
GCCCTTGATCTGATGATACT+AGG - chr4_2:52852085-52852104 None:intergenic 45.0%
AAAATCTGTGGACGTGCCAA+AGG + chr4_2:52852114-52852133 Msa0606480:five_prime_UTR 45.0%
AAATCTGTGGACGTGCCAAA+GGG + chr4_2:52852115-52852134 Msa0606480:five_prime_UTR 45.0%
GGGATATCTAGCAGTGTATG+TGG + chr4_2:52852135-52852154 Msa0606480:five_prime_UTR 45.0%
ATGTGGGCGAGAAAATGAAG+CGG + chr4_2:52852152-52852171 Msa0606480:five_prime_UTR 45.0%
GAATATGACCATCCAATGGG+TGG + chr4_2:52852247-52852266 Msa0606480:five_prime_UTR 45.0%
TTTGCCCTAGGAGAGATACT+AGG + chr4_2:52852329-52852348 Msa0606480:five_prime_UTR 45.0%
CGTAAGAGTAGAGAGAGAAG+CGG + chr4_2:52852606-52852625 Msa0606480:five_prime_UTR 45.0%
GACAAAGCAGAAACACAGGT+AGG + chr4_2:52852630-52852649 Msa0606480:five_prime_UTR 45.0%
TGAAAGAAAGATGGAGGCGA+AGG + chr4_2:52852785-52852804 Msa0606480:exon 45.0%
AAACCCGATTGCTCGATATG+AGG + chr4_2:52852911-52852930 Msa0606480:CDS 45.0%
CATAGCTCGTGAGATTGATG+AGG + chr4_2:52853060-52853079 Msa0606480:CDS 45.0%
CCCCTGCTAACTAATTGTAC+AGG + chr4_2:52853178-52853197 Msa0606480:CDS 45.0%
TCGATTCCACTCAGTCTCTA+AGG + chr4_2:52853296-52853315 Msa0606480:CDS 45.0%
ACTTCTTTACAAGGAGAGGC+TGG - chr4_2:52853600-52853619 None:intergenic 45.0%
! CTGTTTGAAATCAGGCCATC+AGG - chr4_2:52854110-52854129 None:intergenic 45.0%
! TGGCATTTAGAGCTCAACCT+GGG - chr4_2:52854148-52854167 None:intergenic 45.0%
! TTGGCATTTAGAGCTCAACC+TGG - chr4_2:52854149-52854168 None:intergenic 45.0%
AACCATTCTCATCTCAGAGG+GGG - chr4_2:52854344-52854363 None:intergenic 45.0%
GAACCATTCTCATCTCAGAG+GGG - chr4_2:52854345-52854364 None:intergenic 45.0%
GAGAACCATTCTCATCTCAG+AGG - chr4_2:52854347-52854366 None:intergenic 45.0%
!!! CTGGTTTTGGAGATGGAAGT+GGG - chr4_2:52854381-52854400 None:intergenic 45.0%
!!! ACTGGTTTTGGAGATGGAAG+TGG - chr4_2:52854382-52854401 None:intergenic 45.0%
!!! GAGCATACTGGTTTTGGAGA+TGG - chr4_2:52854388-52854407 None:intergenic 45.0%
TGCTCTTCTTCACACCCTTT+CGG + chr4_2:52854403-52854422 Msa0606480:intron 45.0%
GGAGGAAAAGATTGACCGAA+AGG - chr4_2:52854421-52854440 None:intergenic 45.0%
AAATGGACACATGGAAGCAG+GGG - chr4_2:52854447-52854466 None:intergenic 45.0%
CTAAATGGACACATGGAAGC+AGG - chr4_2:52854449-52854468 None:intergenic 45.0%
! GGTTAGTCAATGGGAGCAAA+AGG - chr4_2:52854497-52854516 None:intergenic 45.0%
! GTGGTTTTCATCTCTCCGTA+AGG - chr4_2:52854934-52854953 None:intergenic 45.0%
TTGCAGTTTCCGTACTTTCG+TGG + chr4_2:52855309-52855328 Msa0606480:intron 45.0%
TGAGGAAGATAGGTTTGGGT+TGG + chr4_2:52855513-52855532 Msa0606480:intron 45.0%
!! GAAGATAGGTTTGGGTTGGT+CGG + chr4_2:52855517-52855536 Msa0606480:intron 45.0%
ACAACCTCTGTAAACAGGGA+TGG - chr4_2:52855547-52855566 None:intergenic 45.0%
TCCCTGTTTACAGAGGTTGT+TGG + chr4_2:52855547-52855566 Msa0606480:CDS 45.0%
TGATATCCAGTAGACTGTGC+AGG + chr4_2:52855785-52855804 Msa0606480:intron 45.0%
GGATGCAGGCATAAAATTCG+GGG + chr4_2:52855836-52855855 Msa0606480:intron 45.0%
GATGCAGGCATAAAATTCGG+GGG + chr4_2:52855837-52855856 Msa0606480:intron 45.0%
TGAATCGAGTGCAGCAGATT+TGG + chr4_2:52856088-52856107 Msa0606480:CDS 45.0%
GGAAGAGGATTTGTCTGTTC+TGG + chr4_2:52856109-52856128 Msa0606480:CDS 45.0%
GGTGCTAATTGCTAGCAAGT+TGG - chr4_2:52856503-52856522 None:intergenic 45.0%
CTAGCAATTAGCACCTAGCT+AGG + chr4_2:52856508-52856527 Msa0606480:intron 45.0%
CAGTAAACATCACCCTAGCT+AGG - chr4_2:52856524-52856543 None:intergenic 45.0%
TAGGGTGATGTTTACTGTCC+TGG + chr4_2:52856527-52856546 Msa0606480:intron 45.0%
AGGGTGATGTTTACTGTCCT+GGG + chr4_2:52856528-52856547 Msa0606480:intron 45.0%
CAGAGGTAGTTAACTACCGT+TGG + chr4_2:52856819-52856838 Msa0606480:intron 45.0%
TTAACTACCGTTGGGAGATC+CGG + chr4_2:52856828-52856847 Msa0606480:intron 45.0%
TTAATTACCGCTGAAGCCAG+CGG + chr4_2:52856857-52856876 Msa0606480:intron 45.0%
TTAACTACCGCTAAAGCCAG+CGG + chr4_2:52856883-52856902 Msa0606480:intron 45.0%
!! TTAACTACCGCTGGCTTTAG+CGG - chr4_2:52856893-52856912 None:intergenic 45.0%
CAACAACAGTTAACTACCGC+TGG - chr4_2:52856902-52856921 None:intergenic 45.0%
AGGAGAAAGCTGCTGGAAAT+TGG - chr4_2:52856935-52856954 None:intergenic 45.0%
AAAGAGAAGGAGAAAGCTGC+TGG - chr4_2:52856942-52856961 None:intergenic 45.0%
GGAAGAGGATTTGTCTGTTC+TGG + chr4_2:52856109-52856128 Msa0606480:CDS 45.0%
!! TATTCTAATTATTTATTTAA+TGG + chr4_2:52855815-52855834 Msa0606480:intron 5.0%
!! TATTCTAATTATTTATTTAA+TGG + chr4_2:52855815-52855834 Msa0606480:intron 5.0%
TAGTGAGACCACCCATTGGA+TGG - chr4_2:52852258-52852277 None:intergenic 50.0%
GGAATAGTGAGACCACCCAT+TGG - chr4_2:52852262-52852281 None:intergenic 50.0%
!! ACTCAGTCTCTAAGGCTCAC+CGG + chr4_2:52853304-52853323 Msa0606480:CDS 50.0%
! GCATTTAGAGCTCAACCTGG+GGG - chr4_2:52854146-52854165 None:intergenic 50.0%
! GGCATTTAGAGCTCAACCTG+GGG - chr4_2:52854147-52854166 None:intergenic 50.0%
ACCATTCTCATCTCAGAGGG+GGG - chr4_2:52854343-52854362 None:intergenic 50.0%
TTTGGAGATGGAAGTGGGAC+TGG - chr4_2:52854376-52854395 None:intergenic 50.0%
! GGGTGTGAAGAAGAGCATAC+TGG - chr4_2:52854400-52854419 None:intergenic 50.0%
TGTGCCATCCCTGTTTACAG+AGG + chr4_2:52855540-52855559 Msa0606480:CDS 50.0%
GAGTGCAGCAGATTTGGAAG+AGG + chr4_2:52856094-52856113 Msa0606480:CDS 50.0%
AGATCACAATGCCTCAGGTC+AGG + chr4_2:52856181-52856200 Msa0606480:intron 50.0%
! TAAACCATTGGCCTGACCTG+AGG - chr4_2:52856195-52856214 None:intergenic 50.0%
!! CATTGAAGCATCGCACTCAC+AGG - chr4_2:52856236-52856255 None:intergenic 50.0%
ACTAATGCCGGATCTCCCAA+CGG - chr4_2:52856838-52856857 None:intergenic 50.0%
!! TTAACTACCGCTGGCTTCAG+CGG - chr4_2:52856867-52856886 None:intergenic 50.0%
TAGCGGTAGTTAACTACCGC+TGG - chr4_2:52856876-52856895 None:intergenic 50.0%
AGATCACAATGCCTCAGGTC+AGG + chr4_2:52856181-52856200 Msa0606480:intron 50.0%
!! CATTGAAGCATCGCACTCAC+AGG - chr4_2:52856236-52856255 None:intergenic 50.0%
CGGCGACAAAGCAGAAACAC+AGG + chr4_2:52852626-52852645 Msa0606480:five_prime_UTR 55.0%
TAGTTAGCAGGGGGTCACTG+TGG - chr4_2:52853171-52853190 None:intergenic 55.0%
GGTGAGCCTTAGAGACTGAG+TGG - chr4_2:52853305-52853324 None:intergenic 55.0%
!! CTCAGTCTCTAAGGCTCACC+GGG + chr4_2:52853305-52853324 Msa0606480:CDS 55.0%
!! TCAGTCTCTAAGGCTCACCG+GGG + chr4_2:52853306-52853325 Msa0606480:CDS 55.0%
AGATCAGCATACTCTCCCCC+AGG + chr4_2:52854128-52854147 Msa0606480:intron 55.0%
TCTCAGAGGGGGGATTCTCT+TGG - chr4_2:52854333-52854352 None:intergenic 55.0%
!! TCCCCCCTCTGAGATGAGAA+TGG + chr4_2:52854339-52854358 Msa0606480:intron 55.0%
ACATGGAAGCAGGGGAATGG+AGG - chr4_2:52854439-52854458 None:intergenic 55.0%
GACACATGGAAGCAGGGGAA+TGG - chr4_2:52854442-52854461 None:intergenic 55.0%
GATCAGCCTGCACAGTCTAC+TGG - chr4_2:52855794-52855813 None:intergenic 55.0%
AATGCCTCAGGTCAGGCCAA+TGG + chr4_2:52856188-52856207 Msa0606480:intron 55.0%
AATGCCTCAGGTCAGGCCAA+TGG + chr4_2:52856188-52856207 Msa0606480:intron 55.0%
! TCAACCATTGGCCTGACCTG+AGG - chr4_2:52857824-52857843 None:intergenic 55.0%
!! CAGTCTCTAAGGCTCACCGG+GGG + chr4_2:52853307-52853326 Msa0606480:CDS 60.0%
CTTGAGCGTGCCCGTGAAGA+AGG + chr4_2:52853342-52853361 Msa0606480:CDS 60.0%
AGCATCGCACTCACAGGCCA+TGG - chr4_2:52856230-52856249 None:intergenic 60.0%
AGCATCGCACTCACAGGCCA+TGG - chr4_2:52856230-52856249 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52851974 52858088 52851974 ID=Msa0606480;Name=Msa0606480
chr4_2 mRNA 52851974 52858088 52851974 ID=Msa0606480-mRNA-1;Parent=Msa0606480;Name=Msa0606480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=821|0.66|0.6|1|0.66|0.7|10|245|443
chr4_2 exon 52851974 52852967 52851974 ID=Msa0606480-mRNA-1:exon:12975;Parent=Msa0606480-mRNA-1
chr4_2 exon 52853054 52853199 52853054 ID=Msa0606480-mRNA-1:exon:12976;Parent=Msa0606480-mRNA-1
chr4_2 exon 52853295 52853418 52853295 ID=Msa0606480-mRNA-1:exon:12977;Parent=Msa0606480-mRNA-1
chr4_2 exon 52853585 52853737 52853585 ID=Msa0606480-mRNA-1:exon:12978;Parent=Msa0606480-mRNA-1
chr4_2 exon 52855315 52855500 52855315 ID=Msa0606480-mRNA-1:exon:12979;Parent=Msa0606480-mRNA-1
chr4_2 exon 52855525 52855656 52855525 ID=Msa0606480-mRNA-1:exon:12980;Parent=Msa0606480-mRNA-1
chr4_2 exon 52855844 52856000 52855844 ID=Msa0606480-mRNA-1:exon:12981;Parent=Msa0606480-mRNA-1
chr4_2 exon 52856080 52856197 52856080 ID=Msa0606480-mRNA-1:exon:12982;Parent=Msa0606480-mRNA-1
chr4_2 exon 52856405 52856412 52856405 ID=Msa0606480-mRNA-1:exon:12983;Parent=Msa0606480-mRNA-1
chr4_2 exon 52857709 52858088 52857709 ID=Msa0606480-mRNA-1:exon:12984;Parent=Msa0606480-mRNA-1
chr4_2 five_prime_UTR 52851974 52852794 52851974 ID=Msa0606480-mRNA-1:five_prime_utr;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52852795 52852967 52852795 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52853054 52853199 52853054 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52853295 52853418 52853295 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52853585 52853737 52853585 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52855315 52855500 52855315 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52855525 52855656 52855525 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52855844 52856000 52855844 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52856080 52856197 52856080 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52856405 52856412 52856405 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 CDS 52857709 52857843 52857709 ID=Msa0606480-mRNA-1:cds;Parent=Msa0606480-mRNA-1
chr4_2 three_prime_UTR 52857844 52858088 52857844 ID=Msa0606480-mRNA-1:three_prime_utr;Parent=Msa0606480-mRNA-1
Gene Sequence

>Msa0606480

ATGGAGGCGAAGGATATTCGTAATCGTAATCGAATTCGGAAAATTTTGGAATCCAAAGTTGTTGAAGAAGATGGTTGTGATGCGTCAAAACTATATATAAAAAAATTGTTTAGACTAAACCCGATTGCTCGATATGAGGATTCTAGAGTCATTGAAGTTGGAGAATATAAATGGACTTTCATAGCTCGTGAGATTGATGAGGGAACGTTGCAATTTGAGTTACTTGCTGACATAGACAATAATCCAAGGTTGAAAATTTATGCACTGATCACAATAGCGATAATTCACCACAGTGACCCCCTGCTAACTAATTGTACAGATCGATTCCACTCAGTCTCTAAGGCTCACCGGGGGTATATACTTCATCTTGAGCGTGCCCGTGAAGAAGGTTTTCTTGACCCTAAGGATAATGTTCAAGTAGAATTGCAGATTCAGATGTTTGGAAAAAATGTCTTCCAGCCTCTCCTTGTAAAGAAGTATCGAGCTGAGCTTCTTTTGACTAAAATGCATTTTGTGAACATGATTTGTTCTAGTTTTTTTAAGAAGACAGTAGATAACTTGAAGAGCCTGATTGACAATAAAAATAAATGGCAAAGTTTCCGTACTTTCGTGGAAGAAAGTGACCAAATTTCGAAGGACCAAATGTTTTGGGAAGAACAAGATGTAATTCAGAAAGCCTTGGTGAATCACTTTTTTGTAGATGGTATTTTGACATCTCCTTTGCTAATGGAGATATTATACATTGGTTATACATCAATAAATGCTAACAGTACTACGGCTAAGTTTGGGTTGGTCGGTGTGCCATCCCTGTTTACAGAGGTTGTTGGTAGGGAGTATAAACCTATATCTGAAAGCATTCTCAGAGAGTTTTGTTGCATGATAGTGGAAATGTTTGCTCTTGACTGGATATTCAGGCATAAAATTCGGGGGAACTTTACTCAAAGTGAGCTCAATCGAACTGAAAAGAAGTCCAGAAGAAAGGTGAAAAAAACGGGAAAAACTATTGTTTTGACTGTTATACCAATTACACCAAAGAGAAATGATAAATGTGTAGAAGAGATGGAGCAAACGCAAAATGATGAATCGAGTGCAGCAGATTTGGAAGAGGATTTGTCTGTTCTGGATACAGTGAGAGCTGATCTTAATGACTTGGTTATAAATGCTGGAATTGAAGATCACAATGCCTCAGTCTTTACACAAAATGATGAATCGATTGCAACAGATTTGGAAGAGGATTTGTCTGTTCTGGATACAGTGAGAGCTGATCTTAATGACTTGGTTATAAATGCTGGAATTGAAGATCACAATGCCTCAGGTCAGGCCAATGGTTGA
Protein sequence

>Msa0606480

MEAKDIRNRNRIRKILESKVVEEDGCDASKLYIKKLFRLNPIARYEDSRVIEVGEYKWTFIAREIDEGTLQFELLADIDNNPRLKIYALITIAIIHHSDPLLTNCTDRFHSVSKAHRGYILHLERAREEGFLDPKDNVQVELQIQMFGKNVFQPLLVKKYRAELLLTKMHFVNMICSSFFKKTVDNLKSLIDNKNKWQSFRTFVEESDQISKDQMFWEEQDVIQKALVNHFFVDGILTSPLLMEILYIGYTSINANSTTAKFGLVGVPSLFTEVVGREYKPISESILREFCCMIVEMFALDWIFRHKIRGNFTQSELNRTEKKSRRKVKKTGKTIVLTVIPITPKRNDKCVEEMEQTQNDESSAADLEEDLSVLDTVRADLNDLVINAGIEDHNASVFTQNDESIATDLEEDLSVLDTVRADLNDLVINAGIEDHNASGQANG*