Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607170 | XP_013456587.1 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607170 | sp|Q9LZT4|EXLA1_ARATH | 62.452 | 261 | 95 | 2 | 3 | 260 | 5 | 265 | 1.25e-111 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607170 | I3SMJ2 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 536 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607170 | Msa0647350 | 0.864771 | 9.567602e-65 | -8.615850e-47 |
| Msa0607170 | Msa0690220 | 0.917314 | 6.177190e-86 | -8.615850e-47 |
| Msa0607170 | Msa1265020 | 0.801372 | 9.286667e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607170 | MtrunA17_Chr4g0038741 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 536 |
| Msa0607170 | MtrunA17_Chr4g0055061 | 40.079 | 252 | 139 | 6 | 4 | 245 | 5 | 254 | 1.11e-62 | 197 |
| Msa0607170 | MtrunA17_Chr5g0399811 | 39.344 | 244 | 138 | 5 | 4 | 242 | 12 | 250 | 2.30e-56 | 181 |
| Msa0607170 | MtrunA17_Chr4g0055561 | 37.838 | 222 | 134 | 3 | 26 | 244 | 31 | 251 | 1.71e-53 | 173 |
| Msa0607170 | MtrunA17_Chr4g0055601 | 36.123 | 227 | 142 | 2 | 19 | 242 | 24 | 250 | 4.01e-53 | 172 |
| Msa0607170 | MtrunA17_Chr7g0231211 | 33.333 | 213 | 137 | 4 | 26 | 234 | 50 | 261 | 8.26e-36 | 128 |
| Msa0607170 | MtrunA17_Chr2g0324201 | 30.435 | 253 | 161 | 7 | 3 | 244 | 9 | 257 | 1.91e-29 | 111 |
| Msa0607170 | MtrunA17_Chr2g0324221 | 29.688 | 256 | 163 | 7 | 2 | 244 | 8 | 259 | 5.70e-29 | 110 |
| Msa0607170 | MtrunA17_Chr7g0231221 | 31.100 | 209 | 137 | 4 | 40 | 242 | 67 | 274 | 2.35e-27 | 106 |
| Msa0607170 | MtrunA17_Chr4g0012801 | 31.132 | 212 | 136 | 6 | 40 | 246 | 61 | 267 | 4.21e-27 | 105 |
| Msa0607170 | MtrunA17_Chr4g0021641 | 29.008 | 262 | 161 | 7 | 2 | 242 | 6 | 263 | 4.53e-27 | 105 |
| Msa0607170 | MtrunA17_Chr7g0218741 | 30.952 | 252 | 143 | 9 | 5 | 238 | 10 | 248 | 6.17e-22 | 91.7 |
| Msa0607170 | MtrunA17_Chr7g0218751 | 29.528 | 254 | 146 | 10 | 5 | 240 | 10 | 248 | 2.15e-20 | 87.4 |
| Msa0607170 | MtrunA17_Chr3g0092071 | 30.081 | 246 | 137 | 10 | 11 | 237 | 13 | 242 | 3.52e-20 | 86.7 |
| Msa0607170 | MtrunA17_Chr4g0069711 | 27.273 | 231 | 136 | 7 | 25 | 237 | 63 | 279 | 5.93e-19 | 84.0 |
| Msa0607170 | MtrunA17_Chr8g0360041 | 29.070 | 258 | 150 | 9 | 5 | 243 | 11 | 254 | 9.24e-19 | 82.8 |
| Msa0607170 | MtrunA17_Chr1g0193631 | 29.339 | 242 | 132 | 10 | 24 | 242 | 31 | 256 | 2.39e-18 | 82.0 |
| Msa0607170 | MtrunA17_Chr7g0271001 | 31.416 | 226 | 130 | 10 | 32 | 242 | 38 | 253 | 1.69e-17 | 79.3 |
| Msa0607170 | MtrunA17_Chr7g0218761 | 30.734 | 218 | 120 | 8 | 38 | 239 | 6 | 208 | 4.65e-17 | 77.4 |
| Msa0607170 | MtrunA17_Chr8g0360721 | 28.899 | 218 | 124 | 8 | 38 | 239 | 15 | 217 | 7.80e-17 | 77.0 |
| Msa0607170 | MtrunA17_Chr5g0417701 | 29.070 | 258 | 146 | 11 | 1 | 237 | 1 | 242 | 1.63e-16 | 76.6 |
| Msa0607170 | MtrunA17_Chr5g0398271 | 29.075 | 227 | 130 | 6 | 34 | 243 | 50 | 262 | 5.00e-16 | 75.5 |
| Msa0607170 | MtrunA17_Chr4g0057091 | 27.434 | 226 | 133 | 7 | 34 | 242 | 49 | 260 | 1.40e-15 | 74.3 |
| Msa0607170 | MtrunA17_Chr5g0432611 | 30.317 | 221 | 123 | 9 | 34 | 238 | 42 | 247 | 2.30e-15 | 73.6 |
| Msa0607170 | MtrunA17_Chr3g0128791 | 27.602 | 221 | 127 | 9 | 34 | 237 | 44 | 248 | 8.94e-15 | 72.0 |
| Msa0607170 | MtrunA17_Chr3g0128801 | 27.602 | 221 | 127 | 9 | 34 | 237 | 44 | 248 | 1.09e-14 | 71.6 |
| Msa0607170 | MtrunA17_Chr4g0042521 | 27.477 | 222 | 130 | 7 | 32 | 237 | 36 | 242 | 1.40e-14 | 71.2 |
| Msa0607170 | MtrunA17_Chr1g0157061 | 27.111 | 225 | 142 | 9 | 32 | 243 | 26 | 241 | 2.51e-14 | 70.5 |
| Msa0607170 | MtrunA17_Chr7g0238681 | 27.556 | 225 | 128 | 9 | 32 | 237 | 43 | 251 | 3.31e-14 | 70.5 |
| Msa0607170 | MtrunA17_Chr3g0107291 | 25.676 | 222 | 130 | 9 | 34 | 237 | 51 | 255 | 4.65e-14 | 70.1 |
| Msa0607170 | MtrunA17_Chr5g0435311 | 27.556 | 225 | 128 | 10 | 32 | 237 | 93 | 301 | 6.96e-14 | 70.1 |
| Msa0607170 | MtrunA17_Chr4g0055581 | 34.343 | 99 | 63 | 2 | 84 | 180 | 9 | 107 | 1.46e-13 | 65.5 |
| Msa0607170 | MtrunA17_Chr7g0217661 | 25.397 | 252 | 153 | 10 | 1 | 237 | 4 | 235 | 3.50e-13 | 67.4 |
| Msa0607170 | MtrunA17_Chr3g0107311 | 25.225 | 222 | 131 | 9 | 34 | 237 | 45 | 249 | 8.75e-13 | 66.2 |
| Msa0607170 | MtrunA17_Chr5g0433841 | 26.293 | 232 | 137 | 9 | 26 | 238 | 44 | 260 | 9.54e-13 | 66.2 |
| Msa0607170 | MtrunA17_Chr4g0021561 | 25.794 | 252 | 150 | 11 | 4 | 234 | 13 | 248 | 2.47e-12 | 65.1 |
| Msa0607170 | MtrunA17_Chr2g0328261 | 27.027 | 222 | 127 | 9 | 32 | 234 | 45 | 250 | 3.54e-12 | 64.7 |
| Msa0607170 | MtrunA17_Chr4g0031621 | 28.191 | 188 | 104 | 7 | 32 | 201 | 43 | 217 | 2.34e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607170 | AT3G45970.1 | 62.452 | 261 | 95 | 2 | 3 | 260 | 5 | 265 | 1.27e-112 | 325 |
| Msa0607170 | AT3G45960.2 | 64.567 | 254 | 88 | 1 | 3 | 254 | 5 | 258 | 6.48e-112 | 323 |
| Msa0607170 | AT4G38400.1 | 64.372 | 247 | 86 | 1 | 16 | 260 | 19 | 265 | 8.34e-110 | 318 |
| Msa0607170 | AT3G45970.2 | 61.233 | 227 | 85 | 2 | 37 | 260 | 12 | 238 | 7.62e-107 | 309 |
| Msa0607170 | AT3G45960.1 | 64.286 | 210 | 73 | 1 | 47 | 254 | 1 | 210 | 2.79e-102 | 296 |
| Msa0607170 | AT4G17030.1 | 39.640 | 222 | 132 | 1 | 25 | 244 | 29 | 250 | 4.33e-56 | 180 |
| Msa0607170 | AT1G65680.1 | 34.440 | 241 | 146 | 7 | 11 | 242 | 35 | 272 | 5.71e-32 | 119 |
| Msa0607170 | AT2G20750.1 | 31.321 | 265 | 154 | 9 | 5 | 246 | 11 | 270 | 8.18e-30 | 113 |
| Msa0607170 | AT3G60570.2 | 32.864 | 213 | 132 | 8 | 38 | 244 | 3 | 210 | 1.13e-28 | 108 |
| Msa0607170 | AT3G60570.1 | 32.407 | 216 | 135 | 8 | 33 | 242 | 46 | 256 | 3.11e-28 | 108 |
| Msa0607170 | AT4G28250.1 | 28.352 | 261 | 168 | 7 | 1 | 246 | 7 | 263 | 6.21e-28 | 108 |
| Msa0607170 | AT1G65681.1 | 28.571 | 210 | 142 | 4 | 38 | 242 | 15 | 221 | 5.34e-26 | 102 |
| Msa0607170 | AT2G45110.1 | 30.806 | 211 | 138 | 4 | 38 | 242 | 50 | 258 | 2.02e-25 | 101 |
| Msa0607170 | AT4G28250.2 | 27.586 | 261 | 164 | 8 | 1 | 246 | 7 | 257 | 5.26e-23 | 94.7 |
| Msa0607170 | AT2G20750.2 | 33.333 | 198 | 107 | 7 | 5 | 180 | 11 | 205 | 4.33e-22 | 91.7 |
| Msa0607170 | AT5G39290.1 | 27.935 | 247 | 147 | 11 | 12 | 242 | 47 | 278 | 2.59e-18 | 82.4 |
| Msa0607170 | AT1G20190.1 | 31.646 | 237 | 136 | 11 | 23 | 243 | 26 | 252 | 6.33e-18 | 80.9 |
| Msa0607170 | AT1G12560.1 | 31.579 | 209 | 127 | 8 | 40 | 239 | 56 | 257 | 7.76e-17 | 78.2 |
| Msa0607170 | AT5G39270.1 | 27.126 | 247 | 149 | 11 | 12 | 242 | 47 | 278 | 1.77e-16 | 77.4 |
| Msa0607170 | AT2G03090.1 | 27.600 | 250 | 146 | 10 | 7 | 237 | 14 | 247 | 3.84e-16 | 76.3 |
| Msa0607170 | AT5G05290.1 | 26.587 | 252 | 153 | 8 | 5 | 238 | 14 | 251 | 5.55e-16 | 75.9 |
| Msa0607170 | AT5G39260.1 | 27.273 | 231 | 155 | 7 | 13 | 238 | 35 | 257 | 9.09e-16 | 75.1 |
| Msa0607170 | AT4G28250.3 | 32.877 | 146 | 85 | 5 | 40 | 180 | 55 | 192 | 9.13e-16 | 74.3 |
| Msa0607170 | AT2G40610.1 | 28.507 | 221 | 126 | 9 | 34 | 237 | 43 | 248 | 9.83e-16 | 75.1 |
| Msa0607170 | AT5G39310.1 | 28.899 | 218 | 125 | 9 | 40 | 242 | 109 | 311 | 1.08e-15 | 75.9 |
| Msa0607170 | AT1G69530.2 | 28.959 | 221 | 124 | 8 | 34 | 237 | 40 | 244 | 2.61e-15 | 73.9 |
| Msa0607170 | AT1G69530.1 | 28.959 | 221 | 124 | 8 | 34 | 237 | 40 | 244 | 2.61e-15 | 73.9 |
| Msa0607170 | AT4G28250.4 | 27.979 | 193 | 117 | 6 | 1 | 179 | 7 | 191 | 2.89e-15 | 72.8 |
| Msa0607170 | AT2G39700.1 | 28.444 | 225 | 126 | 9 | 32 | 237 | 42 | 250 | 2.90e-15 | 73.9 |
| Msa0607170 | AT1G69530.3 | 28.571 | 224 | 127 | 8 | 34 | 240 | 40 | 247 | 3.44e-15 | 73.9 |
| Msa0607170 | AT5G02260.1 | 27.350 | 234 | 133 | 11 | 25 | 237 | 34 | 251 | 8.17e-15 | 72.4 |
| Msa0607170 | AT1G26770.1 | 25.692 | 253 | 153 | 8 | 1 | 234 | 4 | 240 | 1.50e-14 | 71.6 |
| Msa0607170 | AT1G26770.2 | 25.296 | 253 | 154 | 7 | 1 | 234 | 14 | 250 | 1.51e-14 | 71.6 |
| Msa0607170 | AT4G01630.1 | 27.413 | 259 | 160 | 11 | 1 | 243 | 9 | 255 | 1.83e-14 | 71.6 |
| Msa0607170 | AT5G56320.1 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 3.41e-14 | 70.9 |
| Msa0607170 | AT5G56320.2 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 3.41e-14 | 70.9 |
| Msa0607170 | AT5G56320.3 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 4.55e-14 | 70.9 |
| Msa0607170 | AT2G37640.1 | 27.523 | 218 | 137 | 7 | 32 | 237 | 47 | 255 | 1.81e-13 | 68.9 |
| Msa0607170 | AT1G69530.4 | 30.387 | 181 | 97 | 6 | 34 | 198 | 40 | 207 | 2.51e-13 | 67.8 |
| Msa0607170 | AT1G69530.5 | 30.387 | 181 | 97 | 6 | 34 | 198 | 40 | 207 | 3.29e-13 | 67.8 |
| Msa0607170 | AT1G20190.2 | 31.000 | 200 | 114 | 10 | 57 | 242 | 3 | 192 | 4.36e-13 | 66.6 |
| Msa0607170 | AT5G39280.1 | 25.820 | 244 | 150 | 9 | 15 | 242 | 46 | 274 | 4.88e-13 | 67.8 |
| Msa0607170 | AT3G15370.1 | 28.926 | 242 | 141 | 10 | 15 | 239 | 19 | 246 | 5.09e-13 | 67.4 |
| Msa0607170 | AT2G37640.2 | 27.230 | 213 | 134 | 7 | 37 | 237 | 27 | 230 | 1.02e-12 | 66.2 |
| Msa0607170 | AT5G39300.1 | 25.101 | 247 | 154 | 9 | 12 | 242 | 44 | 275 | 1.69e-12 | 66.2 |
| Msa0607170 | AT4G38210.1 | 27.928 | 222 | 127 | 8 | 34 | 237 | 43 | 249 | 2.44e-12 | 65.5 |
| Msa0607170 | AT3G15370.2 | 30.233 | 215 | 121 | 9 | 40 | 239 | 76 | 276 | 2.81e-12 | 65.9 |
| Msa0607170 | AT2G28950.1 | 28.000 | 225 | 127 | 10 | 32 | 237 | 42 | 250 | 1.26e-11 | 63.5 |
| Msa0607170 | AT3G55500.1 | 26.201 | 229 | 126 | 10 | 32 | 237 | 45 | 253 | 2.05e-11 | 62.8 |
| Msa0607170 | AT1G62980.1 | 28.378 | 222 | 128 | 8 | 35 | 239 | 45 | 252 | 2.49e-11 | 62.8 |
| Msa0607170 | AT3G29030.1 | 27.700 | 213 | 130 | 7 | 34 | 237 | 51 | 248 | 4.80e-11 | 62.0 |
Find 64 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTATTCCATATGATTTC+TGG | 0.118772 | 4_2:-53889365 | None:intergenic |
| TTTATTCTTCTGTGTATTAT+AGG | 0.146546 | 4_2:+53889321 | Msa0607170:three_prime_UTR |
| TGGTTGTGGTGCTTGCTTTC+AGG | 0.151650 | 4_2:+53887243 | Msa0607170:CDS |
| TCAAAATCATATACCATATA+TGG | 0.235563 | 4_2:+53886931 | Msa0607170:exon |
| GTTTCTTCACTCTTCTATAA+TGG | 0.287049 | 4_2:+53887217 | Msa0607170:CDS |
| ACTAGGTTGGATCTTCAAAT+TGG | 0.295466 | 4_2:+53888998 | Msa0607170:intron |
| AATTTAATTGCTAAATAATC+TGG | 0.300940 | 4_2:-53888812 | None:intergenic |
| ATGAAACATGGTCATAATTC+AGG | 0.316784 | 4_2:+53889232 | Msa0607170:exon |
| CATCAGGGTATGATGGTAAA+TGG | 0.338953 | 4_2:+53889103 | Msa0607170:CDS |
| TGATTTCTGGGTATTACATT+TGG | 0.343681 | 4_2:-53889352 | None:intergenic |
| CAAAGAAAGAAAGCCATATA+TGG | 0.357423 | 4_2:-53886944 | None:intergenic |
| GGCATTGCAATTTCGTTTAG+TGG | 0.362944 | 4_2:+53889077 | Msa0607170:CDS |
| AAAAGGTTCTTCCAGCTGAT+TGG | 0.372823 | 4_2:+53889136 | Msa0607170:CDS |
| CTTTACAGCTATGGCTCAAA+AGG | 0.376515 | 4_2:+53887593 | Msa0607170:CDS |
| TCTTTAGCACTTGACTTTAG+TGG | 0.377568 | 4_2:+53887175 | Msa0607170:CDS |
| TTTGGAGAAATAAGAAGCTT+TGG | 0.378209 | 4_2:-53887026 | None:intergenic |
| TTTCGTTTAGTGGTTACATC+AGG | 0.387420 | 4_2:+53889087 | Msa0607170:CDS |
| AGCTATTCCATATGATTTCT+GGG | 0.389705 | 4_2:-53889364 | None:intergenic |
| TTCTATAATGGAGCTGGTTG+TGG | 0.406537 | 4_2:+53887229 | Msa0607170:CDS |
| TGTAATACCCAGAAATCATA+TGG | 0.413943 | 4_2:+53889357 | Msa0607170:three_prime_UTR |
| TATATATGTATATGTTATGT+GGG | 0.430100 | 4_2:-53889279 | None:intergenic |
| AGTGGTGGCCACCTTGCAGC+TGG | 0.430129 | 4_2:+53887193 | Msa0607170:CDS |
| GCAGCTGGGGCATGTGGGTA+TGG | 0.430576 | 4_2:+53887151 | Msa0607170:intron |
| TCACTCTTCTATAATGGAGC+TGG | 0.434156 | 4_2:+53887223 | Msa0607170:CDS |
| ACATGAAAGAGCAGAAGCTT+TGG | 0.441652 | 4_2:-53887044 | None:intergenic |
| CTATATATGTATATGTTATG+TGG | 0.474790 | 4_2:-53889280 | None:intergenic |
| CTGTAAAGGCTCTACTGCTT+AGG | 0.481361 | 4_2:-53887578 | None:intergenic |
| TTATATGCAGCTGGGGCATG+TGG | 0.485952 | 4_2:+53887145 | Msa0607170:intron |
| GGTATGATGGTAAATGGCTA+TGG | 0.487295 | 4_2:+53889109 | Msa0607170:CDS |
| AGTTTCTTGAGCAGAAATCA+TGG | 0.495684 | 4_2:+53889021 | Msa0607170:CDS |
| GTGGTTACATCAGGGTATGA+TGG | 0.498564 | 4_2:+53889096 | Msa0607170:CDS |
| GGGCAGTGTGGGACACAAGT+AGG | 0.499790 | 4_2:+53889043 | Msa0607170:CDS |
| ATGAAGTTGAGTAGTTACAA+AGG | 0.504732 | 4_2:-53889414 | None:intergenic |
| CAGTAGAGCCTTTACAGCTA+TGG | 0.510486 | 4_2:+53887584 | Msa0607170:CDS |
| GACCATGTTTCATCATTACA+TGG | 0.510819 | 4_2:-53889222 | None:intergenic |
| GTTTCTTGAGCAGAAATCAT+GGG | 0.515717 | 4_2:+53889022 | Msa0607170:CDS |
| AGTAGGTGTTGATGTAGCTC+AGG | 0.516706 | 4_2:+53888862 | Msa0607170:CDS |
| CAGAAATCATGGGGCAGTGT+GGG | 0.519402 | 4_2:+53889032 | Msa0607170:CDS |
| CAAGCTATATGCACAAAAGA+AGG | 0.520775 | 4_2:+53887504 | Msa0607170:CDS |
| TGCCAAGTTTCAAAATCTGT+TGG | 0.529827 | 4_2:-53887623 | None:intergenic |
| TATATGCAGCTGGGGCATGT+GGG | 0.536289 | 4_2:+53887146 | Msa0607170:intron |
| AAGATCAGTCAATACCACTT+TGG | 0.552511 | 4_2:-53887529 | None:intergenic |
| GGCAGTGTGGGACACAAGTA+GGG | 0.554581 | 4_2:+53889044 | Msa0607170:CDS |
| TTAGCACTTGACTTTAGTGG+TGG | 0.554795 | 4_2:+53887178 | Msa0607170:CDS |
| CACAAGTAGGGTTCCACAAG+GGG | 0.563760 | 4_2:+53889056 | Msa0607170:CDS |
| TTCGTTTAGTGGTTACATCA+GGG | 0.571759 | 4_2:+53889088 | Msa0607170:CDS |
| GATTACAGAAATTGCACAGG+AGG | 0.581799 | 4_2:+53889191 | Msa0607170:CDS |
| TCAGATTACAGAAATTGCAC+AGG | 0.586054 | 4_2:+53889188 | Msa0607170:CDS |
| CGAAATTGCAATGCCCCTTG+TGG | 0.586600 | 4_2:-53889069 | None:intergenic |
| GTATGATGGTAAATGGCTAT+GGG | 0.593985 | 4_2:+53889110 | Msa0607170:CDS |
| TTGTTGACATTGAATACAAG+AGG | 0.607511 | 4_2:+53887646 | Msa0607170:CDS |
| GTGAAGAAACACCAGCTGCA+AGG | 0.611075 | 4_2:-53887204 | None:intergenic |
| TTTACAGCTATGGCTCAAAA+GGG | 0.611980 | 4_2:+53887594 | Msa0607170:CDS |
| ACACAAGTAGGGTTCCACAA+GGG | 0.618151 | 4_2:+53889055 | Msa0607170:CDS |
| CAAGCAACGATCACAAGCAG+TGG | 0.634417 | 4_2:-53886996 | None:intergenic |
| GCAGAAATCATGGGGCAGTG+TGG | 0.638652 | 4_2:+53889031 | Msa0607170:CDS |
| ATTACAGAAATTGCACAGGA+GGG | 0.647308 | 4_2:+53889192 | Msa0607170:CDS |
| TTTCTTGAGCAGAAATCATG+GGG | 0.654832 | 4_2:+53889023 | Msa0607170:CDS |
| AGTACAAAACAATTTGACAA+AGG | 0.655056 | 4_2:-53886893 | None:intergenic |
| GACACAAGTAGGGTTCCACA+AGG | 0.655516 | 4_2:+53889054 | Msa0607170:CDS |
| CACAAAAGAAGGTACCAAAG+TGG | 0.665562 | 4_2:+53887515 | Msa0607170:CDS |
| ATATATGTATATGTTATGTG+GGG | 0.681513 | 4_2:-53889278 | None:intergenic |
| CACCATGTAATGATGAAACA+TGG | 0.686342 | 4_2:+53889220 | Msa0607170:CDS |
| AAGAAACACCAGCTGCAAGG+TGG | 0.714603 | 4_2:-53887201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAATATATTTAATT+TGG | - | chr4_2:53887419-53887438 | None:intergenic | 0.0% |
| !!! | ATGTACTATATATTAATTTT+AGG | + | chr4_2:53887931-53887950 | Msa0607170:intron | 10.0% |
| !!! | TGTACTATATATTAATTTTA+GGG | + | chr4_2:53887932-53887951 | Msa0607170:intron | 10.0% |
| !! | AAAAATTGTAAAAAAAAATC+CGG | - | chr4_2:53888190-53888209 | None:intergenic | 10.0% |
| !! | TTTATTTATCAATTTGTATA+TGG | + | chr4_2:53888685-53888704 | Msa0607170:intron | 10.0% |
| !! | TTAAAAAAATAATTAACCAT+TGG | + | chr4_2:53888953-53888972 | Msa0607170:intron | 10.0% |
| !! | AAAATTGTAAAAAAAAATCC+GGG | - | chr4_2:53888189-53888208 | None:intergenic | 15.0% |
| !!! | ATTTTATAATGTCGTAAATT+TGG | + | chr4_2:53888629-53888648 | Msa0607170:intron | 15.0% |
| !! | AATTTAATTGCTAAATAATC+TGG | - | chr4_2:53888815-53888834 | None:intergenic | 15.0% |
| !!! | CAATTAAATTTTTGTATCAA+GGG | + | chr4_2:53888825-53888844 | Msa0607170:CDS | 15.0% |
| !!! | AATTAAATTTTTGTATCAAG+GGG | + | chr4_2:53888826-53888845 | Msa0607170:CDS | 15.0% |
| !! | TTTAATTCAATAAAAACACT+TGG | - | chr4_2:53888938-53888957 | None:intergenic | 15.0% |
| !! | TATATATGTATATGTTATGT+GGG | - | chr4_2:53889282-53889301 | None:intergenic | 15.0% |
| !!! | CATATACATATATAGATTTT+CGG | + | chr4_2:53889288-53889307 | Msa0607170:three_prime_UTR | 15.0% |
| !! | TCAAAATCATATACCATATA+TGG | + | chr4_2:53886931-53886950 | Msa0607170:exon | 20.0% |
| !!! | TTCATATAATTTGTCTACAT+TGG | - | chr4_2:53887863-53887882 | None:intergenic | 20.0% |
| !! | AAAACAAAAAAAATAAGCCA+GGG | - | chr4_2:53888134-53888153 | None:intergenic | 20.0% |
| !! | AAAAACAAAAAAAATAAGCC+AGG | - | chr4_2:53888135-53888154 | None:intergenic | 20.0% |
| !!! | CTGAAAAAACTGAATTTTTT+CGG | - | chr4_2:53888216-53888235 | None:intergenic | 20.0% |
| !! | ATGCACTACATTAAAATTAA+GGG | - | chr4_2:53888541-53888560 | None:intergenic | 20.0% |
| !! | TATGCACTACATTAAAATTA+AGG | - | chr4_2:53888542-53888561 | None:intergenic | 20.0% |
| !!! | GCAATTAAATTTTTGTATCA+AGG | + | chr4_2:53888824-53888843 | Msa0607170:CDS | 20.0% |
| !!! | ATTAAATTTTTGTATCAAGG+GGG | + | chr4_2:53888827-53888846 | Msa0607170:CDS | 20.0% |
| !! | ATATATGTATATGTTATGTG+GGG | - | chr4_2:53889281-53889300 | None:intergenic | 20.0% |
| !! | CTATATATGTATATGTTATG+TGG | - | chr4_2:53889283-53889302 | None:intergenic | 20.0% |
| !! | TTTATTCTTCTGTGTATTAT+AGG | + | chr4_2:53889321-53889340 | Msa0607170:three_prime_UTR | 20.0% |
| ! | AGTACAAAACAATTTGACAA+AGG | - | chr4_2:53886896-53886915 | None:intergenic | 25.0% |
| !!! | ATGATTTTGAGAAATGAGAA+GGG | - | chr4_2:53886921-53886940 | None:intergenic | 25.0% |
| !!! | TATGATTTTGAGAAATGAGA+AGG | - | chr4_2:53886922-53886941 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTTATATGCAGC+TGG | + | chr4_2:53887136-53887155 | Msa0607170:intron | 25.0% |
| !!! | GATTTTTTTTATATGCAGCT+GGG | + | chr4_2:53887137-53887156 | Msa0607170:intron | 25.0% |
| !!! | ATTTTTTTTATATGCAGCTG+GGG | + | chr4_2:53887138-53887157 | Msa0607170:intron | 25.0% |
| !!! | ATTTAATTTGGCTAAATGTC+AGG | - | chr4_2:53887407-53887426 | None:intergenic | 25.0% |
| ! | ATTAATGAACAATTTGATGC+AGG | + | chr4_2:53887467-53887486 | Msa0607170:intron | 25.0% |
| ! | TAGCGCAATAATAATAGTAA+CGG | + | chr4_2:53887899-53887918 | Msa0607170:intron | 25.0% |
| ! | TCAAATGACCTATAATTGTA+GGG | - | chr4_2:53887975-53887994 | None:intergenic | 25.0% |
| ! | TTCAAATGACCTATAATTGT+AGG | - | chr4_2:53887976-53887995 | None:intergenic | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | - | chr4_2:53888438-53888457 | None:intergenic | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | - | chr4_2:53888437-53888456 | None:intergenic | 25.0% |
| ! | AAACAAAAAAAATAAGCCAG+GGG | - | chr4_2:53888133-53888152 | None:intergenic | 25.0% |
| !! | ACTGGGAAAAAAAATTTTGA+AGG | - | chr4_2:53888161-53888180 | None:intergenic | 25.0% |
| ! | TTAAGGAAAAAAAATAAGCC+AGG | + | chr4_2:53888337-53888356 | Msa0607170:intron | 25.0% |
| ! | TAAGGAAAAAAAATAAGCCA+GGG | + | chr4_2:53888338-53888357 | Msa0607170:intron | 25.0% |
| ! | ACAATTTATCAAAATGGCAT+GGG | - | chr4_2:53888380-53888399 | None:intergenic | 25.0% |
| ! | AACAATTTATCAAAATGGCA+TGG | - | chr4_2:53888381-53888400 | None:intergenic | 25.0% |
| ! | ACGTCAACAATTTATCAAAA+TGG | - | chr4_2:53888386-53888405 | None:intergenic | 25.0% |
| !!! | ATTTTGATAAATTGTTGACG+TGG | + | chr4_2:53888385-53888404 | Msa0607170:intron | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | + | chr4_2:53888437-53888456 | Msa0607170:intron | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | + | chr4_2:53888438-53888457 | Msa0607170:intron | 25.0% |
| ! | TAATGTCGTAAATTTGGAAA+TGG | + | chr4_2:53888635-53888654 | Msa0607170:intron | 25.0% |
| ! | TGAGTACAAAAAACAGAATT+TGG | + | chr4_2:53888760-53888779 | Msa0607170:CDS | 25.0% |
| ! | CTTATTAATTACTACTAGGT+TGG | + | chr4_2:53888985-53889004 | Msa0607170:intron | 25.0% |
| !! | ATACATATATAGATTTTCGG+TGG | + | chr4_2:53889291-53889310 | Msa0607170:three_prime_UTR | 25.0% |
| CAAAGAAAGAAAGCCATATA+TGG | - | chr4_2:53886947-53886966 | None:intergenic | 30.0% | |
| TTTGGAGAAATAAGAAGCTT+TGG | - | chr4_2:53887029-53887048 | None:intergenic | 30.0% | |
| GTTTCTTCACTCTTCTATAA+TGG | + | chr4_2:53887217-53887236 | Msa0607170:CDS | 30.0% | |
| !!! | GTCAGGATAGTTTTAAAATG+CGG | - | chr4_2:53887390-53887409 | None:intergenic | 30.0% |
| TTGTTGACATTGAATACAAG+AGG | + | chr4_2:53887646-53887665 | Msa0607170:CDS | 30.0% | |
| GAAGTAAAGCTACAAAAAAG+TGG | - | chr4_2:53887685-53887704 | None:intergenic | 30.0% | |
| ! | TCTTAATATGCCAGCATTTT+TGG | + | chr4_2:53887774-53887793 | Msa0607170:intron | 30.0% |
| !! | CATTGGTGTTCTATTTTCAA+TGG | - | chr4_2:53887846-53887865 | None:intergenic | 30.0% |
| ! | ATTTTCGTCCCTACAATTAT+AGG | + | chr4_2:53887964-53887983 | Msa0607170:intron | 30.0% |
| !!! | TTTTTTTCCCAGTTTTTTCC+CGG | + | chr4_2:53888168-53888187 | Msa0607170:intron | 30.0% |
| AAAAAATCCGGGAAAAAACT+GGG | - | chr4_2:53888178-53888197 | None:intergenic | 30.0% | |
| AAAAAAATCCGGGAAAAAAC+TGG | - | chr4_2:53888179-53888198 | None:intergenic | 30.0% | |
| AAGGAAAAAAAATAAGCCAG+GGG | + | chr4_2:53888339-53888358 | Msa0607170:intron | 30.0% | |
| CAATTTATCAAAATGGCATG+GGG | - | chr4_2:53888379-53888398 | None:intergenic | 30.0% | |
| !!! | TTCTGTTTTTTGTACTCACA+TGG | - | chr4_2:53888758-53888777 | None:intergenic | 30.0% |
| !!! | CACTTGGTAATGATTTTTGT+TGG | - | chr4_2:53888922-53888941 | None:intergenic | 30.0% |
| !! | TAATTAACCATTGGTTTCTG+TGG | + | chr4_2:53888962-53888981 | Msa0607170:intron | 30.0% |
| GTGGCTTATTAATTACTACT+AGG | + | chr4_2:53888981-53889000 | Msa0607170:intron | 30.0% | |
| ATGAAACATGGTCATAATTC+AGG | + | chr4_2:53889232-53889251 | Msa0607170:exon | 30.0% | |
| ! | TGATTTCTGGGTATTACATT+TGG | - | chr4_2:53889355-53889374 | None:intergenic | 30.0% |
| TGTAATACCCAGAAATCATA+TGG | + | chr4_2:53889357-53889376 | Msa0607170:three_prime_UTR | 30.0% | |
| AGCTATTCCATATGATTTCT+GGG | - | chr4_2:53889367-53889386 | None:intergenic | 30.0% | |
| AAGCTATTCCATATGATTTC+TGG | - | chr4_2:53889368-53889387 | None:intergenic | 30.0% | |
| ATGAAGTTGAGTAGTTACAA+AGG | - | chr4_2:53889417-53889436 | None:intergenic | 30.0% | |
| TCTTTAGCACTTGACTTTAG+TGG | + | chr4_2:53887175-53887194 | Msa0607170:CDS | 35.0% | |
| TGTACCCAAATCATCGTATT+CGG | + | chr4_2:53887268-53887287 | Msa0607170:intron | 35.0% | |
| AAACCCGAATACGATGATTT+GGG | - | chr4_2:53887275-53887294 | None:intergenic | 35.0% | |
| AAAACCCGAATACGATGATT+TGG | - | chr4_2:53887276-53887295 | None:intergenic | 35.0% | |
| ATGATTAATAACACCGGCAA+CGG | - | chr4_2:53887320-53887339 | None:intergenic | 35.0% | |
| ! | CTTCTTTTGTGCATATAGCT+TGG | - | chr4_2:53887506-53887525 | None:intergenic | 35.0% |
| CAAGCTATATGCACAAAAGA+AGG | + | chr4_2:53887504-53887523 | Msa0607170:CDS | 35.0% | |
| AAGATCAGTCAATACCACTT+TGG | - | chr4_2:53887532-53887551 | None:intergenic | 35.0% | |
| TTTACAGCTATGGCTCAAAA+GGG | + | chr4_2:53887594-53887613 | Msa0607170:CDS | 35.0% | |
| !!! | AGCCAACAGATTTTGAAACT+TGG | + | chr4_2:53887621-53887640 | Msa0607170:CDS | 35.0% |
| TGCCAAGTTTCAAAATCTGT+TGG | - | chr4_2:53887626-53887645 | None:intergenic | 35.0% | |
| ATGCTGGCATATTAAGAATG+TGG | - | chr4_2:53887771-53887790 | None:intergenic | 35.0% | |
| !!! | AATATGCCAGCATTTTTGGT+TGG | + | chr4_2:53887778-53887797 | Msa0607170:intron | 35.0% |
| !! | TTCTATTTTCAATGGTGGGA+CGG | - | chr4_2:53887838-53887857 | None:intergenic | 35.0% |
| ! | GGTGTTCTATTTTCAATGGT+GGG | - | chr4_2:53887842-53887861 | None:intergenic | 35.0% |
| ! | TGGTGTTCTATTTTCAATGG+TGG | - | chr4_2:53887843-53887862 | None:intergenic | 35.0% |
| ! | AACTTTTACAGGGACGAAAT+GGG | - | chr4_2:53888448-53888467 | None:intergenic | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | - | chr4_2:53888447-53888466 | None:intergenic | 35.0% |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | - | chr4_2:53888088-53888107 | None:intergenic | 35.0% |
| ACGTCAGCAAATTACCAAAA+TGG | + | chr4_2:53888087-53888106 | Msa0607170:intron | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | + | chr4_2:53888092-53888111 | Msa0607170:intron | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | + | chr4_2:53888093-53888112 | Msa0607170:intron | 35.0% | |
| ! | TAACTTTTACAGGGACGAAA+TGG | + | chr4_2:53888447-53888466 | Msa0607170:intron | 35.0% |
| ! | AACTTTTACAGGGACGAAAT+GGG | + | chr4_2:53888448-53888467 | Msa0607170:intron | 35.0% |
| TTCAAATGGCCTATAATTGC+AGG | + | chr4_2:53888497-53888516 | Msa0607170:intron | 35.0% | |
| TCAAATGGCCTATAATTGCA+GGG | + | chr4_2:53888498-53888517 | Msa0607170:intron | 35.0% | |
| ! | TAATCCCACGTGGATTTTAA+TGG | + | chr4_2:53888723-53888742 | Msa0607170:intron | 35.0% |
| TAATAAGCCACAGAAACCAA+TGG | - | chr4_2:53888972-53888991 | None:intergenic | 35.0% | |
| ! | ACTAGGTTGGATCTTCAAAT+TGG | + | chr4_2:53888998-53889017 | Msa0607170:intron | 35.0% |
| AGTTTCTTGAGCAGAAATCA+TGG | + | chr4_2:53889021-53889040 | Msa0607170:CDS | 35.0% | |
| GTTTCTTGAGCAGAAATCAT+GGG | + | chr4_2:53889022-53889041 | Msa0607170:CDS | 35.0% | |
| TTTCTTGAGCAGAAATCATG+GGG | + | chr4_2:53889023-53889042 | Msa0607170:CDS | 35.0% | |
| TTTCGTTTAGTGGTTACATC+AGG | + | chr4_2:53889087-53889106 | Msa0607170:CDS | 35.0% | |
| TTCGTTTAGTGGTTACATCA+GGG | + | chr4_2:53889088-53889107 | Msa0607170:CDS | 35.0% | |
| GTATGATGGTAAATGGCTAT+GGG | + | chr4_2:53889110-53889129 | Msa0607170:CDS | 35.0% | |
| TAAATGGCTATGGGCAAAAA+AGG | + | chr4_2:53889119-53889138 | Msa0607170:CDS | 35.0% | |
| TTCCAGCTGATTGGAAAAAT+GGG | + | chr4_2:53889145-53889164 | Msa0607170:CDS | 35.0% | |
| TCAGATTACAGAAATTGCAC+AGG | + | chr4_2:53889188-53889207 | Msa0607170:CDS | 35.0% | |
| ATTACAGAAATTGCACAGGA+GGG | + | chr4_2:53889192-53889211 | Msa0607170:CDS | 35.0% | |
| CACCATGTAATGATGAAACA+TGG | + | chr4_2:53889220-53889239 | Msa0607170:CDS | 35.0% | |
| GACCATGTTTCATCATTACA+TGG | - | chr4_2:53889225-53889244 | None:intergenic | 35.0% | |
| ACATGAAAGAGCAGAAGCTT+TGG | - | chr4_2:53887047-53887066 | None:intergenic | 40.0% | |
| TTAGCACTTGACTTTAGTGG+TGG | + | chr4_2:53887178-53887197 | Msa0607170:CDS | 40.0% | |
| ! | TCACTCTTCTATAATGGAGC+TGG | + | chr4_2:53887223-53887242 | Msa0607170:CDS | 40.0% |
| ! | TTCTATAATGGAGCTGGTTG+TGG | + | chr4_2:53887229-53887248 | Msa0607170:CDS | 40.0% |
| GTACCCAAATCATCGTATTC+GGG | + | chr4_2:53887269-53887288 | Msa0607170:intron | 40.0% | |
| !! | TGCCGGTGTTATTAATCATG+CGG | + | chr4_2:53887321-53887340 | Msa0607170:intron | 40.0% |
| GTCCGCATGATTAATAACAC+CGG | - | chr4_2:53887326-53887345 | None:intergenic | 40.0% | |
| !! | CACAAAAGAAGGTACCAAAG+TGG | + | chr4_2:53887515-53887534 | Msa0607170:CDS | 40.0% |
| ! | CTTTTGAGCCATAGCTGTAA+AGG | - | chr4_2:53887595-53887614 | None:intergenic | 40.0% |
| CTTTACAGCTATGGCTCAAA+AGG | + | chr4_2:53887593-53887612 | Msa0607170:CDS | 40.0% | |
| TGGGAGGATTAATAAGCTCA+AGG | - | chr4_2:53888006-53888025 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | - | chr4_2:53888400-53888419 | None:intergenic | 40.0% | |
| TTGACGTGGCAGTGATTAAA+AGG | + | chr4_2:53888399-53888418 | Msa0607170:intron | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | + | chr4_2:53888400-53888419 | Msa0607170:intron | 40.0% | |
| GCAGTGATTAAAAGGGAAGA+GGG | + | chr4_2:53888407-53888426 | Msa0607170:intron | 40.0% | |
| CTCAGGGACGAAAATTCAAA+TGG | + | chr4_2:53888483-53888502 | Msa0607170:intron | 40.0% | |
| ! | CTTTTCGTCCCTGCAATTAT+AGG | - | chr4_2:53888509-53888528 | None:intergenic | 40.0% |
| ! | GAACATTGATTAATCCCACG+TGG | + | chr4_2:53888713-53888732 | Msa0607170:intron | 40.0% |
| TGCACCATTAAAATCCACGT+GGG | - | chr4_2:53888730-53888749 | None:intergenic | 40.0% | |
| GGCATTGCAATTTCGTTTAG+TGG | + | chr4_2:53889077-53889096 | Msa0607170:CDS | 40.0% | |
| CATCAGGGTATGATGGTAAA+TGG | + | chr4_2:53889103-53889122 | Msa0607170:CDS | 40.0% | |
| GGTATGATGGTAAATGGCTA+TGG | + | chr4_2:53889109-53889128 | Msa0607170:CDS | 40.0% | |
| AAAAGGTTCTTCCAGCTGAT+TGG | + | chr4_2:53889136-53889155 | Msa0607170:CDS | 40.0% | |
| CTTCCAGCTGATTGGAAAAA+TGG | + | chr4_2:53889144-53889163 | Msa0607170:CDS | 40.0% | |
| TCCAGCTGATTGGAAAAATG+GGG | + | chr4_2:53889146-53889165 | Msa0607170:CDS | 40.0% | |
| GATTACAGAAATTGCACAGG+AGG | + | chr4_2:53889191-53889210 | Msa0607170:CDS | 40.0% | |
| CTGTAAAGGCTCTACTGCTT+AGG | - | chr4_2:53887581-53887600 | None:intergenic | 45.0% | |
| CAGTAGAGCCTTTACAGCTA+TGG | + | chr4_2:53887584-53887603 | Msa0607170:CDS | 45.0% | |
| ! | TACTAGCTTAGGTGGGAAGT+GGG | - | chr4_2:53887805-53887824 | None:intergenic | 45.0% |
| ! | CACTGTCTACTAGCTTAGGT+GGG | - | chr4_2:53887812-53887831 | None:intergenic | 45.0% |
| ! | TTTTACAGGGACGAAATGGG+AGG | - | chr4_2:53888451-53888470 | None:intergenic | 45.0% |
| GCAGTGATTAAAAGGGGAGA+GGG | - | chr4_2:53888066-53888085 | None:intergenic | 45.0% | |
| GACGTGGCAGTGATTAAAAG+GGG | - | chr4_2:53888401-53888420 | None:intergenic | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | - | chr4_2:53888074-53888093 | None:intergenic | 45.0% | |
| !! | CGTCAATTCCCATGCCATTT+TGG | - | chr4_2:53888104-53888123 | None:intergenic | 45.0% |
| GGAATTGACGAAAATACCCC+TGG | + | chr4_2:53888114-53888133 | Msa0607170:intron | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | - | chr4_2:53888114-53888133 | None:intergenic | 45.0% | |
| GGCAGTGATTAAAAGGGAAG+AGG | + | chr4_2:53888406-53888425 | Msa0607170:intron | 45.0% | |
| ! | TTTTACAGGGACGAAATGGG+AGG | + | chr4_2:53888451-53888470 | Msa0607170:intron | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | + | chr4_2:53888466-53888485 | Msa0607170:intron | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | + | chr4_2:53888467-53888486 | Msa0607170:intron | 45.0% |
| CTGCACCATTAAAATCCACG+TGG | - | chr4_2:53888731-53888750 | None:intergenic | 45.0% | |
| !! | AGTAGGTGTTGATGTAGCTC+AGG | + | chr4_2:53888862-53888881 | Msa0607170:CDS | 45.0% |
| ACACAAGTAGGGTTCCACAA+GGG | + | chr4_2:53889055-53889074 | Msa0607170:CDS | 45.0% | |
| GTGGTTACATCAGGGTATGA+TGG | + | chr4_2:53889096-53889115 | Msa0607170:CDS | 45.0% | |
| !! | ACCCCATTTTTCCAATCAGC+TGG | - | chr4_2:53889150-53889169 | None:intergenic | 45.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | - | chr4_2:53888260-53888279 | None:intergenic | 5.0% |
| !!! | AAAATTTTGAAATTTTTTTA+AGG | + | chr4_2:53888320-53888339 | Msa0607170:intron | 5.0% |
| CAAGCAACGATCACAAGCAG+TGG | - | chr4_2:53886999-53887018 | None:intergenic | 50.0% | |
| TTATATGCAGCTGGGGCATG+TGG | + | chr4_2:53887145-53887164 | Msa0607170:intron | 50.0% | |
| TATATGCAGCTGGGGCATGT+GGG | + | chr4_2:53887146-53887165 | Msa0607170:intron | 50.0% | |
| AAGAAACACCAGCTGCAAGG+TGG | - | chr4_2:53887204-53887223 | None:intergenic | 50.0% | |
| GTGAAGAAACACCAGCTGCA+AGG | - | chr4_2:53887207-53887226 | None:intergenic | 50.0% | |
| TGGTTGTGGTGCTTGCTTTC+AGG | + | chr4_2:53887243-53887262 | Msa0607170:CDS | 50.0% | |
| GTGGGTCCAACCAAAAATGC+TGG | - | chr4_2:53887787-53887806 | None:intergenic | 50.0% | |
| ! | CTACTAGCTTAGGTGGGAAG+TGG | - | chr4_2:53887806-53887825 | None:intergenic | 50.0% |
| ! | CCACTGTCTACTAGCTTAGG+TGG | - | chr4_2:53887813-53887832 | None:intergenic | 50.0% |
| CCACCTAAGCTAGTAGACAG+TGG | + | chr4_2:53887810-53887829 | Msa0607170:intron | 50.0% | |
| ! | GTGCCACTGTCTACTAGCTT+AGG | - | chr4_2:53887816-53887835 | None:intergenic | 50.0% |
| GGCAGTGATTAAAAGGGGAG+AGG | - | chr4_2:53888067-53888086 | None:intergenic | 50.0% | |
| GGGGGTCAAACAGAGATAGT+AGG | + | chr4_2:53888845-53888864 | Msa0607170:CDS | 50.0% | |
| CAGAAATCATGGGGCAGTGT+GGG | + | chr4_2:53889032-53889051 | Msa0607170:CDS | 50.0% | |
| GACACAAGTAGGGTTCCACA+AGG | + | chr4_2:53889054-53889073 | Msa0607170:CDS | 50.0% | |
| CACAAGTAGGGTTCCACAAG+GGG | + | chr4_2:53889056-53889075 | Msa0607170:CDS | 50.0% | |
| CGAAATTGCAATGCCCCTTG+TGG | - | chr4_2:53889072-53889091 | None:intergenic | 50.0% | |
| GTTGCAGTCATTGCCGTTGC+CGG | + | chr4_2:53887304-53887323 | Msa0607170:intron | 55.0% | |
| GCAGAAATCATGGGGCAGTG+TGG | + | chr4_2:53889031-53889050 | Msa0607170:CDS | 55.0% | |
| GGCAGTGTGGGACACAAGTA+GGG | + | chr4_2:53889044-53889063 | Msa0607170:CDS | 55.0% | |
| GGGCAGTGTGGGACACAAGT+AGG | + | chr4_2:53889043-53889062 | Msa0607170:CDS | 60.0% | |
| GCAGCTGGGGCATGTGGGTA+TGG | + | chr4_2:53887151-53887170 | Msa0607170:intron | 65.0% | |
| AGTGGTGGCCACCTTGCAGC+TGG | + | chr4_2:53887193-53887212 | Msa0607170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53886886 | 53889442 | 53886886 | ID=Msa0607170;Name=Msa0607170 |
| chr4_2 | mRNA | 53886886 | 53889442 | 53886886 | ID=Msa0607170-mRNA-1;Parent=Msa0607170;Name=Msa0607170-mRNA-1;_AED=0.15;_eAED=0.15;_QI=64|1|1|1|1|1|5|194|260 |
| chr4_2 | exon | 53886886 | 53887064 | 53886886 | ID=Msa0607170-mRNA-1:exon:13405;Parent=Msa0607170-mRNA-1 |
| chr4_2 | exon | 53887155 | 53887264 | 53887155 | ID=Msa0607170-mRNA-1:exon:13406;Parent=Msa0607170-mRNA-1 |
| chr4_2 | exon | 53887489 | 53887667 | 53887489 | ID=Msa0607170-mRNA-1:exon:13407;Parent=Msa0607170-mRNA-1 |
| chr4_2 | exon | 53888751 | 53888883 | 53888751 | ID=Msa0607170-mRNA-1:exon:13408;Parent=Msa0607170-mRNA-1 |
| chr4_2 | exon | 53889003 | 53889442 | 53889003 | ID=Msa0607170-mRNA-1:exon:13409;Parent=Msa0607170-mRNA-1 |
| chr4_2 | five_prime_UTR | 53886886 | 53886949 | 53886886 | ID=Msa0607170-mRNA-1:five_prime_utr;Parent=Msa0607170-mRNA-1 |
| chr4_2 | CDS | 53886950 | 53887064 | 53886950 | ID=Msa0607170-mRNA-1:cds;Parent=Msa0607170-mRNA-1 |
| chr4_2 | CDS | 53887155 | 53887264 | 53887155 | ID=Msa0607170-mRNA-1:cds;Parent=Msa0607170-mRNA-1 |
| chr4_2 | CDS | 53887489 | 53887667 | 53887489 | ID=Msa0607170-mRNA-1:cds;Parent=Msa0607170-mRNA-1 |
| chr4_2 | CDS | 53888751 | 53888883 | 53888751 | ID=Msa0607170-mRNA-1:cds;Parent=Msa0607170-mRNA-1 |
| chr4_2 | CDS | 53889003 | 53889248 | 53889003 | ID=Msa0607170-mRNA-1:cds;Parent=Msa0607170-mRNA-1 |
| chr4_2 | three_prime_UTR | 53889249 | 53889442 | 53889249 | ID=Msa0607170-mRNA-1:three_prime_utr;Parent=Msa0607170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
