Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647350 | XP_013456587.1 | 98.846 | 260 | 3 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647350 | sp|Q9LZT4|EXLA1_ARATH | 62.069 | 261 | 96 | 2 | 3 | 260 | 5 | 265 | 7.05e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607170 | Msa0647350 | 0.864771 | 9.567602e-65 | -8.615850e-47 |
| Msa0647350 | Msa0690220 | 0.854647 | 1.070972e-61 | -8.615850e-47 |
| Msa0647350 | Msa1420660 | 0.810921 | 9.064739e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647350 | MtrunA17_Chr4g0038741 | 98.846 | 260 | 3 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Msa0647350 | MtrunA17_Chr4g0055061 | 40.079 | 252 | 139 | 6 | 4 | 245 | 5 | 254 | 7.15e-63 | 197 |
| Msa0647350 | MtrunA17_Chr5g0399811 | 38.934 | 244 | 139 | 5 | 4 | 242 | 12 | 250 | 1.33e-55 | 179 |
| Msa0647350 | MtrunA17_Chr4g0055561 | 37.838 | 222 | 134 | 3 | 26 | 244 | 31 | 251 | 9.43e-54 | 174 |
| Msa0647350 | MtrunA17_Chr4g0055601 | 36.123 | 227 | 142 | 2 | 19 | 242 | 24 | 250 | 1.78e-53 | 173 |
| Msa0647350 | MtrunA17_Chr7g0231211 | 32.864 | 213 | 138 | 4 | 26 | 234 | 50 | 261 | 6.19e-35 | 126 |
| Msa0647350 | MtrunA17_Chr2g0324201 | 30.040 | 253 | 162 | 7 | 3 | 244 | 9 | 257 | 1.28e-28 | 109 |
| Msa0647350 | MtrunA17_Chr2g0324221 | 29.297 | 256 | 164 | 7 | 2 | 244 | 8 | 259 | 3.46e-28 | 108 |
| Msa0647350 | MtrunA17_Chr7g0231221 | 30.622 | 209 | 138 | 4 | 40 | 242 | 67 | 274 | 2.01e-26 | 103 |
| Msa0647350 | MtrunA17_Chr4g0012801 | 30.660 | 212 | 137 | 6 | 40 | 246 | 61 | 267 | 2.92e-26 | 103 |
| Msa0647350 | MtrunA17_Chr4g0021641 | 28.626 | 262 | 162 | 7 | 2 | 242 | 6 | 263 | 3.05e-26 | 103 |
| Msa0647350 | MtrunA17_Chr7g0218741 | 30.952 | 252 | 143 | 9 | 5 | 238 | 10 | 248 | 5.93e-22 | 91.7 |
| Msa0647350 | MtrunA17_Chr7g0218751 | 29.528 | 254 | 146 | 10 | 5 | 240 | 10 | 248 | 1.84e-20 | 87.4 |
| Msa0647350 | MtrunA17_Chr3g0092071 | 30.081 | 246 | 137 | 10 | 11 | 237 | 13 | 242 | 3.59e-20 | 86.7 |
| Msa0647350 | MtrunA17_Chr4g0069711 | 27.273 | 231 | 136 | 7 | 25 | 237 | 63 | 279 | 6.00e-19 | 84.0 |
| Msa0647350 | MtrunA17_Chr8g0360041 | 29.070 | 258 | 150 | 9 | 5 | 243 | 11 | 254 | 8.97e-19 | 83.2 |
| Msa0647350 | MtrunA17_Chr1g0193631 | 31.224 | 237 | 134 | 12 | 24 | 242 | 31 | 256 | 2.62e-18 | 81.6 |
| Msa0647350 | MtrunA17_Chr7g0271001 | 31.416 | 226 | 130 | 10 | 32 | 242 | 38 | 253 | 1.03e-17 | 80.1 |
| Msa0647350 | MtrunA17_Chr7g0218761 | 30.734 | 218 | 120 | 8 | 38 | 239 | 6 | 208 | 5.00e-17 | 77.4 |
| Msa0647350 | MtrunA17_Chr8g0360721 | 28.899 | 218 | 124 | 8 | 38 | 239 | 15 | 217 | 8.81e-17 | 77.0 |
| Msa0647350 | MtrunA17_Chr5g0417701 | 29.070 | 258 | 146 | 11 | 1 | 237 | 1 | 242 | 1.53e-16 | 76.6 |
| Msa0647350 | MtrunA17_Chr5g0398271 | 29.075 | 227 | 130 | 6 | 34 | 243 | 50 | 262 | 5.47e-16 | 75.5 |
| Msa0647350 | MtrunA17_Chr4g0057091 | 27.434 | 226 | 133 | 7 | 34 | 242 | 49 | 260 | 1.49e-15 | 74.3 |
| Msa0647350 | MtrunA17_Chr5g0432611 | 30.317 | 221 | 123 | 9 | 34 | 238 | 42 | 247 | 2.46e-15 | 73.6 |
| Msa0647350 | MtrunA17_Chr3g0128791 | 27.602 | 221 | 127 | 9 | 34 | 237 | 44 | 248 | 9.31e-15 | 72.0 |
| Msa0647350 | MtrunA17_Chr3g0128801 | 27.602 | 221 | 127 | 9 | 34 | 237 | 44 | 248 | 1.05e-14 | 71.6 |
| Msa0647350 | MtrunA17_Chr1g0157061 | 27.111 | 225 | 142 | 9 | 32 | 243 | 26 | 241 | 1.44e-14 | 71.2 |
| Msa0647350 | MtrunA17_Chr4g0042521 | 27.928 | 222 | 129 | 7 | 32 | 237 | 36 | 242 | 1.70e-14 | 71.2 |
| Msa0647350 | MtrunA17_Chr7g0238681 | 27.556 | 225 | 128 | 9 | 32 | 237 | 43 | 251 | 3.51e-14 | 70.5 |
| Msa0647350 | MtrunA17_Chr3g0107291 | 25.676 | 222 | 130 | 9 | 34 | 237 | 51 | 255 | 4.98e-14 | 70.1 |
| Msa0647350 | MtrunA17_Chr5g0435311 | 27.556 | 225 | 128 | 10 | 32 | 237 | 93 | 301 | 6.31e-14 | 70.1 |
| Msa0647350 | MtrunA17_Chr4g0055581 | 34.343 | 99 | 63 | 2 | 84 | 180 | 9 | 107 | 1.18e-13 | 65.5 |
| Msa0647350 | MtrunA17_Chr7g0217661 | 25.397 | 252 | 153 | 10 | 1 | 237 | 4 | 235 | 3.21e-13 | 67.4 |
| Msa0647350 | MtrunA17_Chr5g0433841 | 26.293 | 232 | 137 | 9 | 26 | 238 | 44 | 260 | 1.01e-12 | 66.2 |
| Msa0647350 | MtrunA17_Chr3g0107311 | 25.225 | 222 | 131 | 9 | 34 | 237 | 45 | 249 | 1.02e-12 | 66.2 |
| Msa0647350 | MtrunA17_Chr4g0021561 | 25.794 | 252 | 150 | 11 | 4 | 234 | 13 | 248 | 2.44e-12 | 65.1 |
| Msa0647350 | MtrunA17_Chr2g0328261 | 27.027 | 222 | 127 | 9 | 32 | 234 | 45 | 250 | 4.10e-12 | 64.7 |
| Msa0647350 | MtrunA17_Chr4g0031621 | 28.191 | 188 | 104 | 7 | 32 | 201 | 43 | 217 | 2.58e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647350 | AT3G45970.1 | 62.069 | 261 | 96 | 2 | 3 | 260 | 5 | 265 | 7.17e-112 | 323 |
| Msa0647350 | AT3G45960.2 | 64.173 | 254 | 89 | 1 | 3 | 254 | 5 | 258 | 5.01e-111 | 320 |
| Msa0647350 | AT4G38400.1 | 63.968 | 247 | 87 | 1 | 16 | 260 | 19 | 265 | 3.73e-109 | 316 |
| Msa0647350 | AT3G45970.2 | 60.793 | 227 | 86 | 2 | 37 | 260 | 12 | 238 | 2.99e-106 | 308 |
| Msa0647350 | AT3G45960.1 | 63.810 | 210 | 74 | 1 | 47 | 254 | 1 | 210 | 1.54e-101 | 295 |
| Msa0647350 | AT4G17030.1 | 39.189 | 222 | 133 | 1 | 25 | 244 | 29 | 250 | 3.27e-55 | 178 |
| Msa0647350 | AT1G65680.1 | 34.025 | 241 | 147 | 7 | 11 | 242 | 35 | 272 | 4.22e-31 | 116 |
| Msa0647350 | AT2G20750.1 | 30.943 | 265 | 155 | 9 | 5 | 246 | 11 | 270 | 5.24e-29 | 111 |
| Msa0647350 | AT3G60570.2 | 32.394 | 213 | 133 | 8 | 38 | 244 | 3 | 210 | 6.06e-28 | 107 |
| Msa0647350 | AT3G60570.1 | 31.944 | 216 | 136 | 8 | 33 | 242 | 46 | 256 | 1.75e-27 | 107 |
| Msa0647350 | AT4G28250.1 | 27.969 | 261 | 169 | 7 | 1 | 246 | 7 | 263 | 4.21e-27 | 105 |
| Msa0647350 | AT1G65681.1 | 28.095 | 210 | 143 | 4 | 38 | 242 | 15 | 221 | 4.21e-25 | 99.8 |
| Msa0647350 | AT2G45110.1 | 30.332 | 211 | 139 | 4 | 38 | 242 | 50 | 258 | 1.30e-24 | 99.4 |
| Msa0647350 | AT4G28250.2 | 27.203 | 261 | 165 | 8 | 1 | 246 | 7 | 257 | 3.73e-22 | 92.8 |
| Msa0647350 | AT2G20750.2 | 32.828 | 198 | 108 | 7 | 5 | 180 | 11 | 205 | 2.50e-21 | 89.7 |
| Msa0647350 | AT5G39290.1 | 27.935 | 247 | 147 | 11 | 12 | 242 | 47 | 278 | 2.83e-18 | 82.4 |
| Msa0647350 | AT1G20190.1 | 31.646 | 237 | 136 | 11 | 23 | 243 | 26 | 252 | 3.34e-18 | 81.6 |
| Msa0647350 | AT1G12560.1 | 31.579 | 209 | 127 | 8 | 40 | 239 | 56 | 257 | 4.61e-17 | 79.0 |
| Msa0647350 | AT5G39270.1 | 27.126 | 247 | 149 | 11 | 12 | 242 | 47 | 278 | 1.77e-16 | 77.4 |
| Msa0647350 | AT2G03090.1 | 27.600 | 250 | 146 | 10 | 7 | 237 | 14 | 247 | 4.12e-16 | 76.3 |
| Msa0647350 | AT5G39260.1 | 27.273 | 231 | 155 | 7 | 13 | 238 | 35 | 257 | 5.80e-16 | 75.9 |
| Msa0647350 | AT5G05290.1 | 26.587 | 252 | 153 | 8 | 5 | 238 | 14 | 251 | 5.83e-16 | 75.9 |
| Msa0647350 | AT5G39310.1 | 28.505 | 214 | 131 | 9 | 40 | 242 | 109 | 311 | 9.18e-16 | 75.9 |
| Msa0647350 | AT2G40610.1 | 28.507 | 221 | 126 | 9 | 34 | 237 | 43 | 248 | 1.10e-15 | 74.7 |
| Msa0647350 | AT1G69530.2 | 28.959 | 221 | 124 | 8 | 34 | 237 | 40 | 244 | 2.61e-15 | 73.9 |
| Msa0647350 | AT1G69530.1 | 28.959 | 221 | 124 | 8 | 34 | 237 | 40 | 244 | 2.61e-15 | 73.9 |
| Msa0647350 | AT2G39700.1 | 28.444 | 225 | 126 | 9 | 32 | 237 | 42 | 250 | 2.96e-15 | 73.9 |
| Msa0647350 | AT1G69530.3 | 28.571 | 224 | 127 | 8 | 34 | 240 | 40 | 247 | 3.34e-15 | 73.9 |
| Msa0647350 | AT4G28250.3 | 32.192 | 146 | 86 | 5 | 40 | 180 | 55 | 192 | 5.21e-15 | 72.0 |
| Msa0647350 | AT5G02260.1 | 27.350 | 234 | 133 | 11 | 25 | 237 | 34 | 251 | 9.03e-15 | 72.4 |
| Msa0647350 | AT4G01630.1 | 27.413 | 259 | 160 | 11 | 1 | 243 | 9 | 255 | 1.19e-14 | 72.0 |
| Msa0647350 | AT1G26770.1 | 25.692 | 253 | 153 | 8 | 1 | 234 | 4 | 240 | 1.40e-14 | 71.6 |
| Msa0647350 | AT1G26770.2 | 25.296 | 253 | 154 | 7 | 1 | 234 | 14 | 250 | 1.54e-14 | 71.6 |
| Msa0647350 | AT4G28250.4 | 27.461 | 193 | 118 | 6 | 1 | 179 | 7 | 191 | 1.88e-14 | 70.9 |
| Msa0647350 | AT5G56320.1 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 3.65e-14 | 70.9 |
| Msa0647350 | AT5G56320.2 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 3.65e-14 | 70.9 |
| Msa0647350 | AT5G56320.3 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 4.05e-14 | 71.2 |
| Msa0647350 | AT2G37640.1 | 27.523 | 218 | 137 | 7 | 32 | 237 | 47 | 255 | 1.35e-13 | 69.3 |
| Msa0647350 | AT1G20190.2 | 31.000 | 200 | 114 | 10 | 57 | 242 | 3 | 192 | 2.75e-13 | 67.0 |
| Msa0647350 | AT1G69530.4 | 30.387 | 181 | 97 | 6 | 34 | 198 | 40 | 207 | 2.75e-13 | 67.8 |
| Msa0647350 | AT1G69530.5 | 30.387 | 181 | 97 | 6 | 34 | 198 | 40 | 207 | 3.55e-13 | 67.8 |
| Msa0647350 | AT5G39280.1 | 25.820 | 244 | 150 | 9 | 15 | 242 | 46 | 274 | 4.79e-13 | 67.8 |
| Msa0647350 | AT2G37640.2 | 27.230 | 213 | 134 | 7 | 37 | 237 | 27 | 230 | 7.36e-13 | 66.6 |
| Msa0647350 | AT5G39300.1 | 25.101 | 247 | 154 | 9 | 12 | 242 | 44 | 275 | 1.41e-12 | 66.6 |
| Msa0647350 | AT3G15370.1 | 28.512 | 242 | 142 | 10 | 15 | 239 | 19 | 246 | 2.46e-12 | 65.5 |
| Msa0647350 | AT4G38210.1 | 27.928 | 222 | 127 | 8 | 34 | 237 | 43 | 249 | 2.70e-12 | 65.5 |
| Msa0647350 | AT2G28950.1 | 28.000 | 225 | 127 | 10 | 32 | 237 | 42 | 250 | 1.35e-11 | 63.5 |
| Msa0647350 | AT3G15370.2 | 29.767 | 215 | 122 | 9 | 40 | 239 | 76 | 276 | 1.54e-11 | 63.5 |
| Msa0647350 | AT3G55500.1 | 26.201 | 229 | 126 | 10 | 32 | 237 | 45 | 253 | 2.26e-11 | 62.8 |
| Msa0647350 | AT1G62980.1 | 28.251 | 223 | 129 | 8 | 34 | 239 | 44 | 252 | 2.61e-11 | 62.8 |
| Msa0647350 | AT3G29030.1 | 27.700 | 213 | 130 | 7 | 34 | 237 | 51 | 248 | 5.18e-11 | 61.6 |
Find 60 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTATTCCATATGATTTC+TGG | 0.118772 | 4_3:-53407266 | None:intergenic |
| TTTATTCTTCTGTGTATTAT+AGG | 0.146546 | 4_3:+53407222 | Msa0647350:three_prime_UTR |
| TGGTTGTGGTGCTTGCTTTC+AGG | 0.151650 | 4_3:+53405742 | Msa0647350:CDS |
| TCAAAATCATATACCATATA+TGG | 0.235563 | 4_3:+53405430 | Msa0647350:exon |
| GTTTCTTCACTCTTCTATAA+TGG | 0.287049 | 4_3:+53405716 | Msa0647350:CDS |
| ACTAGGTTGGATCTTCAAAT+TGG | 0.295466 | 4_3:+53406899 | Msa0647350:intron |
| AATTTAATTGCTAAATAATC+TGG | 0.300940 | 4_3:-53406713 | None:intergenic |
| ATGAAACATGGTCATAATTC+AGG | 0.316784 | 4_3:+53407133 | Msa0647350:exon |
| CATCAGGGTATGATGGTAAA+TGG | 0.338953 | 4_3:+53407004 | Msa0647350:CDS |
| TGATTTCTGGGTATTACATT+TGG | 0.343681 | 4_3:-53407253 | None:intergenic |
| CAAAGAAAGAAAGCCATATA+TGG | 0.357423 | 4_3:-53405443 | None:intergenic |
| GCAGCTGGGGCATGTGGATA+TGG | 0.360150 | 4_3:+53405650 | Msa0647350:intron |
| GGCATTGCAATTTCGTTTAG+TGG | 0.362944 | 4_3:+53406978 | Msa0647350:CDS |
| AAAAGGTTCTTCCAGCTGAT+TGG | 0.372823 | 4_3:+53407037 | Msa0647350:CDS |
| TCTTTAGCACTTGACTTTAG+TGG | 0.377568 | 4_3:+53405674 | Msa0647350:CDS |
| TTTGGAGAAATAAGAAGCTT+TGG | 0.378209 | 4_3:-53405525 | None:intergenic |
| TTTCGTTTAGTGGTTACATC+AGG | 0.387420 | 4_3:+53406988 | Msa0647350:CDS |
| AGCTATTCCATATGATTTCT+GGG | 0.389705 | 4_3:-53407265 | None:intergenic |
| TTCTATAATGGAGCTGGTTG+TGG | 0.406537 | 4_3:+53405728 | Msa0647350:CDS |
| TGTAATACCCAGAAATCATA+TGG | 0.413943 | 4_3:+53407258 | Msa0647350:three_prime_UTR |
| TATATATGTATATGTTATGT+GGG | 0.430100 | 4_3:-53407180 | None:intergenic |
| TCACTCTTCTATAATGGAGC+TGG | 0.434156 | 4_3:+53405722 | Msa0647350:CDS |
| ACATGAAAGAGCAGAAGCTT+TGG | 0.441652 | 4_3:-53405543 | None:intergenic |
| CTATATATGTATATGTTATG+TGG | 0.474790 | 4_3:-53407181 | None:intergenic |
| CTGTAAAGGCTCTACTGCTT+AGG | 0.481361 | 4_3:-53406077 | None:intergenic |
| AGTGGTGGACACCTTGCAGC+TGG | 0.482221 | 4_3:+53405692 | Msa0647350:CDS |
| GGTATGATGGTAAATGGCTA+TGG | 0.487295 | 4_3:+53407010 | Msa0647350:CDS |
| AGTTTCTTGAGCAGAAATCA+TGG | 0.495684 | 4_3:+53406922 | Msa0647350:CDS |
| GTGGTTACATCAGGGTATGA+TGG | 0.498564 | 4_3:+53406997 | Msa0647350:CDS |
| GGGCAGTGTGGGACACAAGT+AGG | 0.499790 | 4_3:+53406944 | Msa0647350:CDS |
| ATGAAGTTGAGTAGTTACAA+AGG | 0.504732 | 4_3:-53407315 | None:intergenic |
| CAGTAGAGCCTTTACAGCTA+TGG | 0.510486 | 4_3:+53406083 | Msa0647350:CDS |
| GACCATGTTTCATCATTACA+TGG | 0.510819 | 4_3:-53407123 | None:intergenic |
| GTTTCTTGAGCAGAAATCAT+GGG | 0.515717 | 4_3:+53406923 | Msa0647350:CDS |
| AGTAGGTGTTGATGTAGCTC+AGG | 0.516706 | 4_3:+53406763 | Msa0647350:CDS |
| CAGAAATCATGGGGCAGTGT+GGG | 0.519402 | 4_3:+53406933 | Msa0647350:CDS |
| CAAGCAATATGCACAAAAGA+AGG | 0.520775 | 4_3:+53406003 | Msa0647350:CDS |
| TGCCAAGTTTCAAAATCTGT+TGG | 0.529827 | 4_3:-53406122 | None:intergenic |
| AAGATCAGTCAATACCACTT+TGG | 0.552511 | 4_3:-53406028 | None:intergenic |
| GGCAGTGTGGGACACAAGTA+GGG | 0.554581 | 4_3:+53406945 | Msa0647350:CDS |
| TTATATGCAGCTGGGGCATG+TGG | 0.560990 | 4_3:+53405644 | Msa0647350:intron |
| CACAAGTAGGGTTCCACAAG+GGG | 0.563760 | 4_3:+53406957 | Msa0647350:CDS |
| TTAGCACTTGACTTTAGTGG+TGG | 0.565026 | 4_3:+53405677 | Msa0647350:CDS |
| TTCGTTTAGTGGTTACATCA+GGG | 0.571759 | 4_3:+53406989 | Msa0647350:CDS |
| GATTACAGAAATTGCACAGG+AGG | 0.581799 | 4_3:+53407092 | Msa0647350:CDS |
| TCAGATTACAGAAATTGCAC+AGG | 0.586054 | 4_3:+53407089 | Msa0647350:CDS |
| CGAAATTGCAATGCCCCTTG+TGG | 0.586600 | 4_3:-53406970 | None:intergenic |
| GTATGATGGTAAATGGCTAT+GGG | 0.593985 | 4_3:+53407011 | Msa0647350:CDS |
| TTGTTGACATTGAATACAAG+AGG | 0.607511 | 4_3:+53406145 | Msa0647350:CDS |
| GTGAAGAAACACCAGCTGCA+AGG | 0.611075 | 4_3:-53405703 | None:intergenic |
| ACACAAGTAGGGTTCCACAA+GGG | 0.618151 | 4_3:+53406956 | Msa0647350:CDS |
| CAAGCAACGATCACAAGCAG+TGG | 0.634417 | 4_3:-53405495 | None:intergenic |
| GCAGAAATCATGGGGCAGTG+TGG | 0.638652 | 4_3:+53406932 | Msa0647350:CDS |
| ATTACAGAAATTGCACAGGA+GGG | 0.647308 | 4_3:+53407093 | Msa0647350:CDS |
| TTTCTTGAGCAGAAATCATG+GGG | 0.654832 | 4_3:+53406924 | Msa0647350:CDS |
| AGTACAAAACAATTTGACAA+AGG | 0.655056 | 4_3:-53405392 | None:intergenic |
| GACACAAGTAGGGTTCCACA+AGG | 0.655516 | 4_3:+53406955 | Msa0647350:CDS |
| CACAAAAGAAGGTACCAAAG+TGG | 0.665562 | 4_3:+53406014 | Msa0647350:CDS |
| ATATATGTATATGTTATGTG+GGG | 0.681513 | 4_3:-53407179 | None:intergenic |
| CACCATGTAATGATGAAACA+TGG | 0.686342 | 4_3:+53407121 | Msa0647350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAATATATTTAATT+TGG | - | chr4_3:53405918-53405937 | None:intergenic | 0.0% |
| !! | AATAAAAAATATATTTAATT+TGG | - | chr4_3:53405918-53405937 | None:intergenic | 0.0% |
| !! | TTTATTTATCAATTTGTATA+TGG | + | chr4_3:53406586-53406605 | Msa0647350:intron | 10.0% |
| !! | TTAAAAAAATAATTAACCAT+TGG | + | chr4_3:53406854-53406873 | Msa0647350:intron | 10.0% |
| !! | TTTATTTATCAATTTGTATA+TGG | + | chr4_3:53406586-53406605 | Msa0647350:intron | 10.0% |
| !! | TTAAAAAAATAATTAACCAT+TGG | + | chr4_3:53406854-53406873 | Msa0647350:intron | 10.0% |
| !!! | ATTTTATAATGTCGTAAATT+TGG | + | chr4_3:53406530-53406549 | Msa0647350:intron | 15.0% |
| !! | AATTTAATTGCTAAATAATC+TGG | - | chr4_3:53406716-53406735 | None:intergenic | 15.0% |
| !!! | CAATTAAATTTTTGTATCAA+GGG | + | chr4_3:53406726-53406745 | Msa0647350:CDS | 15.0% |
| !!! | AATTAAATTTTTGTATCAAG+GGG | + | chr4_3:53406727-53406746 | Msa0647350:CDS | 15.0% |
| !! | TTTAATTCAATAAAAACACT+TGG | - | chr4_3:53406839-53406858 | None:intergenic | 15.0% |
| !! | TATATATGTATATGTTATGT+GGG | - | chr4_3:53407183-53407202 | None:intergenic | 15.0% |
| !!! | CATATACATATATAGATTTT+CGG | + | chr4_3:53407189-53407208 | Msa0647350:three_prime_UTR | 15.0% |
| !!! | ATTTTATAATGTCGTAAATT+TGG | + | chr4_3:53406530-53406549 | Msa0647350:intron | 15.0% |
| !! | AATTTAATTGCTAAATAATC+TGG | - | chr4_3:53406716-53406735 | None:intergenic | 15.0% |
| !!! | CAATTAAATTTTTGTATCAA+GGG | + | chr4_3:53406726-53406745 | Msa0647350:CDS | 15.0% |
| !!! | AATTAAATTTTTGTATCAAG+GGG | + | chr4_3:53406727-53406746 | Msa0647350:CDS | 15.0% |
| !! | TTTAATTCAATAAAAACACT+TGG | - | chr4_3:53406839-53406858 | None:intergenic | 15.0% |
| !! | TATATATGTATATGTTATGT+GGG | - | chr4_3:53407183-53407202 | None:intergenic | 15.0% |
| !!! | CATATACATATATAGATTTT+CGG | + | chr4_3:53407189-53407208 | Msa0647350:three_prime_UTR | 15.0% |
| !! | TCAAAATCATATACCATATA+TGG | + | chr4_3:53405430-53405449 | Msa0647350:exon | 20.0% |
| !!! | TTCATATAATTTGTCTACAT+TGG | - | chr4_3:53406362-53406381 | None:intergenic | 20.0% |
| !!! | GCAATTAAATTTTTGTATCA+AGG | + | chr4_3:53406725-53406744 | Msa0647350:CDS | 20.0% |
| !!! | ATTAAATTTTTGTATCAAGG+GGG | + | chr4_3:53406728-53406747 | Msa0647350:CDS | 20.0% |
| !! | ATATATGTATATGTTATGTG+GGG | - | chr4_3:53407182-53407201 | None:intergenic | 20.0% |
| !! | CTATATATGTATATGTTATG+TGG | - | chr4_3:53407184-53407203 | None:intergenic | 20.0% |
| !! | TTTATTCTTCTGTGTATTAT+AGG | + | chr4_3:53407222-53407241 | Msa0647350:three_prime_UTR | 20.0% |
| !! | TCAAAATCATATACCATATA+TGG | + | chr4_3:53405430-53405449 | Msa0647350:exon | 20.0% |
| !!! | TTCATATAATTTGTCTACAT+TGG | - | chr4_3:53406362-53406381 | None:intergenic | 20.0% |
| !!! | GCAATTAAATTTTTGTATCA+AGG | + | chr4_3:53406725-53406744 | Msa0647350:CDS | 20.0% |
| !!! | ATTAAATTTTTGTATCAAGG+GGG | + | chr4_3:53406728-53406747 | Msa0647350:CDS | 20.0% |
| !! | ATATATGTATATGTTATGTG+GGG | - | chr4_3:53407182-53407201 | None:intergenic | 20.0% |
| !! | CTATATATGTATATGTTATG+TGG | - | chr4_3:53407184-53407203 | None:intergenic | 20.0% |
| !! | TTTATTCTTCTGTGTATTAT+AGG | + | chr4_3:53407222-53407241 | Msa0647350:three_prime_UTR | 20.0% |
| ! | AGTACAAAACAATTTGACAA+AGG | - | chr4_3:53405395-53405414 | None:intergenic | 25.0% |
| !!! | ATGATTTTGAGAAATGAGAA+GGG | - | chr4_3:53405420-53405439 | None:intergenic | 25.0% |
| !!! | TATGATTTTGAGAAATGAGA+AGG | - | chr4_3:53405421-53405440 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTTATATGCAGC+TGG | + | chr4_3:53405635-53405654 | Msa0647350:intron | 25.0% |
| !!! | GATTTTTTTTATATGCAGCT+GGG | + | chr4_3:53405636-53405655 | Msa0647350:intron | 25.0% |
| !!! | ATTTTTTTTATATGCAGCTG+GGG | + | chr4_3:53405637-53405656 | Msa0647350:intron | 25.0% |
| !!! | ATTTAATTTGGCTAAATGTC+AGG | - | chr4_3:53405906-53405925 | None:intergenic | 25.0% |
| ! | TAGCGCAATAATAATAGTAA+CGG | + | chr4_3:53406398-53406417 | Msa0647350:intron | 25.0% |
| ! | TAATGTCGTAAATTTGGAAA+TGG | + | chr4_3:53406536-53406555 | Msa0647350:intron | 25.0% |
| ! | TGAGTACAAAAAACAGAATT+TGG | + | chr4_3:53406661-53406680 | Msa0647350:CDS | 25.0% |
| ! | CTTATTAATTACTACTAGGT+TGG | + | chr4_3:53406886-53406905 | Msa0647350:intron | 25.0% |
| !! | ATACATATATAGATTTTCGG+TGG | + | chr4_3:53407192-53407211 | Msa0647350:three_prime_UTR | 25.0% |
| ! | AGTACAAAACAATTTGACAA+AGG | - | chr4_3:53405395-53405414 | None:intergenic | 25.0% |
| !!! | ATGATTTTGAGAAATGAGAA+GGG | - | chr4_3:53405420-53405439 | None:intergenic | 25.0% |
| !!! | TATGATTTTGAGAAATGAGA+AGG | - | chr4_3:53405421-53405440 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTTATATGCAGC+TGG | + | chr4_3:53405635-53405654 | Msa0647350:intron | 25.0% |
| !!! | GATTTTTTTTATATGCAGCT+GGG | + | chr4_3:53405636-53405655 | Msa0647350:intron | 25.0% |
| !!! | ATTTTTTTTATATGCAGCTG+GGG | + | chr4_3:53405637-53405656 | Msa0647350:intron | 25.0% |
| !!! | ATTTAATTTGGCTAAATGTC+AGG | - | chr4_3:53405906-53405925 | None:intergenic | 25.0% |
| ! | TAGCGCAATAATAATAGTAA+CGG | + | chr4_3:53406398-53406417 | Msa0647350:intron | 25.0% |
| ! | TAATGTCGTAAATTTGGAAA+TGG | + | chr4_3:53406536-53406555 | Msa0647350:intron | 25.0% |
| ! | TGAGTACAAAAAACAGAATT+TGG | + | chr4_3:53406661-53406680 | Msa0647350:CDS | 25.0% |
| ! | CTTATTAATTACTACTAGGT+TGG | + | chr4_3:53406886-53406905 | Msa0647350:intron | 25.0% |
| !! | ATACATATATAGATTTTCGG+TGG | + | chr4_3:53407192-53407211 | Msa0647350:three_prime_UTR | 25.0% |
| CAAAGAAAGAAAGCCATATA+TGG | - | chr4_3:53405446-53405465 | None:intergenic | 30.0% | |
| TTTGGAGAAATAAGAAGCTT+TGG | - | chr4_3:53405528-53405547 | None:intergenic | 30.0% | |
| GTTTCTTCACTCTTCTATAA+TGG | + | chr4_3:53405716-53405735 | Msa0647350:CDS | 30.0% | |
| ATTAATGAGCAATTTGATGC+AGG | + | chr4_3:53405966-53405985 | Msa0647350:intron | 30.0% | |
| TTGTTGACATTGAATACAAG+AGG | + | chr4_3:53406145-53406164 | Msa0647350:CDS | 30.0% | |
| GAAGTAAAGCTACAAAAAAG+TGG | - | chr4_3:53406184-53406203 | None:intergenic | 30.0% | |
| !! | CATTGGTGTTCTATTTTCAA+TGG | - | chr4_3:53406345-53406364 | None:intergenic | 30.0% |
| !!! | TTCTGTTTTTTGTACTCACA+TGG | - | chr4_3:53406659-53406678 | None:intergenic | 30.0% |
| !!! | CACTTGGTAATGATTTTTGT+TGG | - | chr4_3:53406823-53406842 | None:intergenic | 30.0% |
| !! | TAATTAACCATTGGTTTCTG+TGG | + | chr4_3:53406863-53406882 | Msa0647350:intron | 30.0% |
| GTGGCTTATTAATTACTACT+AGG | + | chr4_3:53406882-53406901 | Msa0647350:intron | 30.0% | |
| ATGAAACATGGTCATAATTC+AGG | + | chr4_3:53407133-53407152 | Msa0647350:exon | 30.0% | |
| ! | TGATTTCTGGGTATTACATT+TGG | - | chr4_3:53407256-53407275 | None:intergenic | 30.0% |
| TGTAATACCCAGAAATCATA+TGG | + | chr4_3:53407258-53407277 | Msa0647350:three_prime_UTR | 30.0% | |
| AGCTATTCCATATGATTTCT+GGG | - | chr4_3:53407268-53407287 | None:intergenic | 30.0% | |
| AAGCTATTCCATATGATTTC+TGG | - | chr4_3:53407269-53407288 | None:intergenic | 30.0% | |
| ATGAAGTTGAGTAGTTACAA+AGG | - | chr4_3:53407318-53407337 | None:intergenic | 30.0% | |
| CAAAGAAAGAAAGCCATATA+TGG | - | chr4_3:53405446-53405465 | None:intergenic | 30.0% | |
| TTTGGAGAAATAAGAAGCTT+TGG | - | chr4_3:53405528-53405547 | None:intergenic | 30.0% | |
| GTTTCTTCACTCTTCTATAA+TGG | + | chr4_3:53405716-53405735 | Msa0647350:CDS | 30.0% | |
| ATTAATGAGCAATTTGATGC+AGG | + | chr4_3:53405966-53405985 | Msa0647350:intron | 30.0% | |
| TTGTTGACATTGAATACAAG+AGG | + | chr4_3:53406145-53406164 | Msa0647350:CDS | 30.0% | |
| GAAGTAAAGCTACAAAAAAG+TGG | - | chr4_3:53406184-53406203 | None:intergenic | 30.0% | |
| !! | CATTGGTGTTCTATTTTCAA+TGG | - | chr4_3:53406345-53406364 | None:intergenic | 30.0% |
| !!! | TTCTGTTTTTTGTACTCACA+TGG | - | chr4_3:53406659-53406678 | None:intergenic | 30.0% |
| !!! | CACTTGGTAATGATTTTTGT+TGG | - | chr4_3:53406823-53406842 | None:intergenic | 30.0% |
| !! | TAATTAACCATTGGTTTCTG+TGG | + | chr4_3:53406863-53406882 | Msa0647350:intron | 30.0% |
| GTGGCTTATTAATTACTACT+AGG | + | chr4_3:53406882-53406901 | Msa0647350:intron | 30.0% | |
| ATGAAACATGGTCATAATTC+AGG | + | chr4_3:53407133-53407152 | Msa0647350:exon | 30.0% | |
| ! | TGATTTCTGGGTATTACATT+TGG | - | chr4_3:53407256-53407275 | None:intergenic | 30.0% |
| TGTAATACCCAGAAATCATA+TGG | + | chr4_3:53407258-53407277 | Msa0647350:three_prime_UTR | 30.0% | |
| AGCTATTCCATATGATTTCT+GGG | - | chr4_3:53407268-53407287 | None:intergenic | 30.0% | |
| AAGCTATTCCATATGATTTC+TGG | - | chr4_3:53407269-53407288 | None:intergenic | 30.0% | |
| ATGAAGTTGAGTAGTTACAA+AGG | - | chr4_3:53407318-53407337 | None:intergenic | 30.0% | |
| TCTTTAGCACTTGACTTTAG+TGG | + | chr4_3:53405674-53405693 | Msa0647350:CDS | 35.0% | |
| !! | TGTCGGTGTTATTAATCTTG+CGG | + | chr4_3:53405820-53405839 | Msa0647350:intron | 35.0% |
| ! | CTTCTTTTGTGCATATTGCT+TGG | - | chr4_3:53406005-53406024 | None:intergenic | 35.0% |
| CAAGCAATATGCACAAAAGA+AGG | + | chr4_3:53406003-53406022 | Msa0647350:CDS | 35.0% | |
| AAGATCAGTCAATACCACTT+TGG | - | chr4_3:53406031-53406050 | None:intergenic | 35.0% | |
| !!! | AGCCAACAGATTTTGAAACT+TGG | + | chr4_3:53406120-53406139 | Msa0647350:CDS | 35.0% |
| TGCCAAGTTTCAAAATCTGT+TGG | - | chr4_3:53406125-53406144 | None:intergenic | 35.0% | |
| ! | TCTTGATATGCCAGCATTTT+TGG | + | chr4_3:53406273-53406292 | Msa0647350:intron | 35.0% |
| !! | TTCTATTTTCAATGGTGGGA+CGG | - | chr4_3:53406337-53406356 | None:intergenic | 35.0% |
| ! | GGTGTTCTATTTTCAATGGT+GGG | - | chr4_3:53406341-53406360 | None:intergenic | 35.0% |
| ! | TGGTGTTCTATTTTCAATGG+TGG | - | chr4_3:53406342-53406361 | None:intergenic | 35.0% |
| ! | TAATCCCACGTGGATTTTAA+TGG | + | chr4_3:53406624-53406643 | Msa0647350:intron | 35.0% |
| TAATAAGCCACAGAAACCAA+TGG | - | chr4_3:53406873-53406892 | None:intergenic | 35.0% | |
| ! | ACTAGGTTGGATCTTCAAAT+TGG | + | chr4_3:53406899-53406918 | Msa0647350:intron | 35.0% |
| AGTTTCTTGAGCAGAAATCA+TGG | + | chr4_3:53406922-53406941 | Msa0647350:CDS | 35.0% | |
| GTTTCTTGAGCAGAAATCAT+GGG | + | chr4_3:53406923-53406942 | Msa0647350:CDS | 35.0% | |
| TTTCTTGAGCAGAAATCATG+GGG | + | chr4_3:53406924-53406943 | Msa0647350:CDS | 35.0% | |
| TTTCGTTTAGTGGTTACATC+AGG | + | chr4_3:53406988-53407007 | Msa0647350:CDS | 35.0% | |
| TTCGTTTAGTGGTTACATCA+GGG | + | chr4_3:53406989-53407008 | Msa0647350:CDS | 35.0% | |
| GTATGATGGTAAATGGCTAT+GGG | + | chr4_3:53407011-53407030 | Msa0647350:CDS | 35.0% | |
| TAAATGGCTATGGGCAAAAA+AGG | + | chr4_3:53407020-53407039 | Msa0647350:CDS | 35.0% | |
| TTCCAGCTGATTGGAAAAAT+GGG | + | chr4_3:53407046-53407065 | Msa0647350:CDS | 35.0% | |
| TCAGATTACAGAAATTGCAC+AGG | + | chr4_3:53407089-53407108 | Msa0647350:CDS | 35.0% | |
| ATTACAGAAATTGCACAGGA+GGG | + | chr4_3:53407093-53407112 | Msa0647350:CDS | 35.0% | |
| CACCATGTAATGATGAAACA+TGG | + | chr4_3:53407121-53407140 | Msa0647350:CDS | 35.0% | |
| GACCATGTTTCATCATTACA+TGG | - | chr4_3:53407126-53407145 | None:intergenic | 35.0% | |
| TCTTTAGCACTTGACTTTAG+TGG | + | chr4_3:53405674-53405693 | Msa0647350:CDS | 35.0% | |
| !! | TGTCGGTGTTATTAATCTTG+CGG | + | chr4_3:53405820-53405839 | Msa0647350:intron | 35.0% |
| ! | CTTCTTTTGTGCATATTGCT+TGG | - | chr4_3:53406005-53406024 | None:intergenic | 35.0% |
| CAAGCAATATGCACAAAAGA+AGG | + | chr4_3:53406003-53406022 | Msa0647350:CDS | 35.0% | |
| AAGATCAGTCAATACCACTT+TGG | - | chr4_3:53406031-53406050 | None:intergenic | 35.0% | |
| !!! | AGCCAACAGATTTTGAAACT+TGG | + | chr4_3:53406120-53406139 | Msa0647350:CDS | 35.0% |
| TGCCAAGTTTCAAAATCTGT+TGG | - | chr4_3:53406125-53406144 | None:intergenic | 35.0% | |
| ! | TCTTGATATGCCAGCATTTT+TGG | + | chr4_3:53406273-53406292 | Msa0647350:intron | 35.0% |
| !! | TTCTATTTTCAATGGTGGGA+CGG | - | chr4_3:53406337-53406356 | None:intergenic | 35.0% |
| ! | GGTGTTCTATTTTCAATGGT+GGG | - | chr4_3:53406341-53406360 | None:intergenic | 35.0% |
| ! | TGGTGTTCTATTTTCAATGG+TGG | - | chr4_3:53406342-53406361 | None:intergenic | 35.0% |
| ! | TAATCCCACGTGGATTTTAA+TGG | + | chr4_3:53406624-53406643 | Msa0647350:intron | 35.0% |
| TAATAAGCCACAGAAACCAA+TGG | - | chr4_3:53406873-53406892 | None:intergenic | 35.0% | |
| ! | ACTAGGTTGGATCTTCAAAT+TGG | + | chr4_3:53406899-53406918 | Msa0647350:intron | 35.0% |
| AGTTTCTTGAGCAGAAATCA+TGG | + | chr4_3:53406922-53406941 | Msa0647350:CDS | 35.0% | |
| GTTTCTTGAGCAGAAATCAT+GGG | + | chr4_3:53406923-53406942 | Msa0647350:CDS | 35.0% | |
| TTTCTTGAGCAGAAATCATG+GGG | + | chr4_3:53406924-53406943 | Msa0647350:CDS | 35.0% | |
| TTTCGTTTAGTGGTTACATC+AGG | + | chr4_3:53406988-53407007 | Msa0647350:CDS | 35.0% | |
| TTCGTTTAGTGGTTACATCA+GGG | + | chr4_3:53406989-53407008 | Msa0647350:CDS | 35.0% | |
| GTATGATGGTAAATGGCTAT+GGG | + | chr4_3:53407011-53407030 | Msa0647350:CDS | 35.0% | |
| TAAATGGCTATGGGCAAAAA+AGG | + | chr4_3:53407020-53407039 | Msa0647350:CDS | 35.0% | |
| TTCCAGCTGATTGGAAAAAT+GGG | + | chr4_3:53407046-53407065 | Msa0647350:CDS | 35.0% | |
| TCAGATTACAGAAATTGCAC+AGG | + | chr4_3:53407089-53407108 | Msa0647350:CDS | 35.0% | |
| ATTACAGAAATTGCACAGGA+GGG | + | chr4_3:53407093-53407112 | Msa0647350:CDS | 35.0% | |
| CACCATGTAATGATGAAACA+TGG | + | chr4_3:53407121-53407140 | Msa0647350:CDS | 35.0% | |
| GACCATGTTTCATCATTACA+TGG | - | chr4_3:53407126-53407145 | None:intergenic | 35.0% | |
| ACATGAAAGAGCAGAAGCTT+TGG | - | chr4_3:53405546-53405565 | None:intergenic | 40.0% | |
| TTAGCACTTGACTTTAGTGG+TGG | + | chr4_3:53405677-53405696 | Msa0647350:CDS | 40.0% | |
| ! | TCACTCTTCTATAATGGAGC+TGG | + | chr4_3:53405722-53405741 | Msa0647350:CDS | 40.0% |
| ! | TTCTATAATGGAGCTGGTTG+TGG | + | chr4_3:53405728-53405747 | Msa0647350:CDS | 40.0% |
| GAGCACAAATCATCGTATTC+AGG | + | chr4_3:53405768-53405787 | Msa0647350:intron | 40.0% | |
| ! | GTTGCAGTCATTGTTGTTGT+CGG | + | chr4_3:53405803-53405822 | Msa0647350:intron | 40.0% |
| !! | CACAAAAGAAGGTACCAAAG+TGG | + | chr4_3:53406014-53406033 | Msa0647350:CDS | 40.0% |
| ! | CTTTTGAGCCATAGCTGTAA+AGG | - | chr4_3:53406094-53406113 | None:intergenic | 40.0% |
| ATGCTGGCATATCAAGAATG+TGG | - | chr4_3:53406270-53406289 | None:intergenic | 40.0% | |
| !!! | GATATGCCAGCATTTTTGGT+TGG | + | chr4_3:53406277-53406296 | Msa0647350:intron | 40.0% |
| ! | GAACATTGATTAATCCCACG+TGG | + | chr4_3:53406614-53406633 | Msa0647350:intron | 40.0% |
| TGCACCATTAAAATCCACGT+GGG | - | chr4_3:53406631-53406650 | None:intergenic | 40.0% | |
| GGCATTGCAATTTCGTTTAG+TGG | + | chr4_3:53406978-53406997 | Msa0647350:CDS | 40.0% | |
| CATCAGGGTATGATGGTAAA+TGG | + | chr4_3:53407004-53407023 | Msa0647350:CDS | 40.0% | |
| GGTATGATGGTAAATGGCTA+TGG | + | chr4_3:53407010-53407029 | Msa0647350:CDS | 40.0% | |
| AAAAGGTTCTTCCAGCTGAT+TGG | + | chr4_3:53407037-53407056 | Msa0647350:CDS | 40.0% | |
| CTTCCAGCTGATTGGAAAAA+TGG | + | chr4_3:53407045-53407064 | Msa0647350:CDS | 40.0% | |
| TCCAGCTGATTGGAAAAATG+GGG | + | chr4_3:53407047-53407066 | Msa0647350:CDS | 40.0% | |
| GATTACAGAAATTGCACAGG+AGG | + | chr4_3:53407092-53407111 | Msa0647350:CDS | 40.0% | |
| ACATGAAAGAGCAGAAGCTT+TGG | - | chr4_3:53405546-53405565 | None:intergenic | 40.0% | |
| TTAGCACTTGACTTTAGTGG+TGG | + | chr4_3:53405677-53405696 | Msa0647350:CDS | 40.0% | |
| ! | TCACTCTTCTATAATGGAGC+TGG | + | chr4_3:53405722-53405741 | Msa0647350:CDS | 40.0% |
| ! | TTCTATAATGGAGCTGGTTG+TGG | + | chr4_3:53405728-53405747 | Msa0647350:CDS | 40.0% |
| GAGCACAAATCATCGTATTC+AGG | + | chr4_3:53405768-53405787 | Msa0647350:intron | 40.0% | |
| ! | GTTGCAGTCATTGTTGTTGT+CGG | + | chr4_3:53405803-53405822 | Msa0647350:intron | 40.0% |
| !! | CACAAAAGAAGGTACCAAAG+TGG | + | chr4_3:53406014-53406033 | Msa0647350:CDS | 40.0% |
| ! | CTTTTGAGCCATAGCTGTAA+AGG | - | chr4_3:53406094-53406113 | None:intergenic | 40.0% |
| ATGCTGGCATATCAAGAATG+TGG | - | chr4_3:53406270-53406289 | None:intergenic | 40.0% | |
| !!! | GATATGCCAGCATTTTTGGT+TGG | + | chr4_3:53406277-53406296 | Msa0647350:intron | 40.0% |
| ! | GAACATTGATTAATCCCACG+TGG | + | chr4_3:53406614-53406633 | Msa0647350:intron | 40.0% |
| TGCACCATTAAAATCCACGT+GGG | - | chr4_3:53406631-53406650 | None:intergenic | 40.0% | |
| GGCATTGCAATTTCGTTTAG+TGG | + | chr4_3:53406978-53406997 | Msa0647350:CDS | 40.0% | |
| CATCAGGGTATGATGGTAAA+TGG | + | chr4_3:53407004-53407023 | Msa0647350:CDS | 40.0% | |
| GGTATGATGGTAAATGGCTA+TGG | + | chr4_3:53407010-53407029 | Msa0647350:CDS | 40.0% | |
| AAAAGGTTCTTCCAGCTGAT+TGG | + | chr4_3:53407037-53407056 | Msa0647350:CDS | 40.0% | |
| CTTCCAGCTGATTGGAAAAA+TGG | + | chr4_3:53407045-53407064 | Msa0647350:CDS | 40.0% | |
| TCCAGCTGATTGGAAAAATG+GGG | + | chr4_3:53407047-53407066 | Msa0647350:CDS | 40.0% | |
| GATTACAGAAATTGCACAGG+AGG | + | chr4_3:53407092-53407111 | Msa0647350:CDS | 40.0% | |
| TGCGGACGCAATGCAATTAT+AGG | + | chr4_3:53405838-53405857 | Msa0647350:intron | 45.0% | |
| CAGACGCAATGCAAAGATTC+TGG | - | chr4_3:53405869-53405888 | None:intergenic | 45.0% | |
| CTGTAAAGGCTCTACTGCTT+AGG | - | chr4_3:53406080-53406099 | None:intergenic | 45.0% | |
| CAGTAGAGCCTTTACAGCTA+TGG | + | chr4_3:53406083-53406102 | Msa0647350:CDS | 45.0% | |
| ! | TACTAGCTTAGGTGGGAAGT+GGG | - | chr4_3:53406304-53406323 | None:intergenic | 45.0% |
| ! | CACTGTCTACTAGCTTAGGT+GGG | - | chr4_3:53406311-53406330 | None:intergenic | 45.0% |
| CTGCACCATTAAAATCCACG+TGG | - | chr4_3:53406632-53406651 | None:intergenic | 45.0% | |
| !! | AGTAGGTGTTGATGTAGCTC+AGG | + | chr4_3:53406763-53406782 | Msa0647350:CDS | 45.0% |
| ACACAAGTAGGGTTCCACAA+GGG | + | chr4_3:53406956-53406975 | Msa0647350:CDS | 45.0% | |
| GTGGTTACATCAGGGTATGA+TGG | + | chr4_3:53406997-53407016 | Msa0647350:CDS | 45.0% | |
| !! | ACCCCATTTTTCCAATCAGC+TGG | - | chr4_3:53407051-53407070 | None:intergenic | 45.0% |
| TGCGGACGCAATGCAATTAT+AGG | + | chr4_3:53405838-53405857 | Msa0647350:intron | 45.0% | |
| CAGACGCAATGCAAAGATTC+TGG | - | chr4_3:53405869-53405888 | None:intergenic | 45.0% | |
| CTGTAAAGGCTCTACTGCTT+AGG | - | chr4_3:53406080-53406099 | None:intergenic | 45.0% | |
| CAGTAGAGCCTTTACAGCTA+TGG | + | chr4_3:53406083-53406102 | Msa0647350:CDS | 45.0% | |
| ! | TACTAGCTTAGGTGGGAAGT+GGG | - | chr4_3:53406304-53406323 | None:intergenic | 45.0% |
| ! | CACTGTCTACTAGCTTAGGT+GGG | - | chr4_3:53406311-53406330 | None:intergenic | 45.0% |
| CTGCACCATTAAAATCCACG+TGG | - | chr4_3:53406632-53406651 | None:intergenic | 45.0% | |
| !! | AGTAGGTGTTGATGTAGCTC+AGG | + | chr4_3:53406763-53406782 | Msa0647350:CDS | 45.0% |
| ACACAAGTAGGGTTCCACAA+GGG | + | chr4_3:53406956-53406975 | Msa0647350:CDS | 45.0% | |
| GTGGTTACATCAGGGTATGA+TGG | + | chr4_3:53406997-53407016 | Msa0647350:CDS | 45.0% | |
| !! | ACCCCATTTTTCCAATCAGC+TGG | - | chr4_3:53407051-53407070 | None:intergenic | 45.0% |
| CAAGCAACGATCACAAGCAG+TGG | - | chr4_3:53405498-53405517 | None:intergenic | 50.0% | |
| TTATATGCAGCTGGGGCATG+TGG | + | chr4_3:53405644-53405663 | Msa0647350:intron | 50.0% | |
| GTGAAGAAACACCAGCTGCA+AGG | - | chr4_3:53405706-53405725 | None:intergenic | 50.0% | |
| TGGTTGTGGTGCTTGCTTTC+AGG | + | chr4_3:53405742-53405761 | Msa0647350:CDS | 50.0% | |
| GTGGGTCCAACCAAAAATGC+TGG | - | chr4_3:53406286-53406305 | None:intergenic | 50.0% | |
| ! | CTACTAGCTTAGGTGGGAAG+TGG | - | chr4_3:53406305-53406324 | None:intergenic | 50.0% |
| ! | CCACTGTCTACTAGCTTAGG+TGG | - | chr4_3:53406312-53406331 | None:intergenic | 50.0% |
| CCACCTAAGCTAGTAGACAG+TGG | + | chr4_3:53406309-53406328 | Msa0647350:intron | 50.0% | |
| ! | GTGCCACTGTCTACTAGCTT+AGG | - | chr4_3:53406315-53406334 | None:intergenic | 50.0% |
| GGGGGTCAAACAGAGATAGT+AGG | + | chr4_3:53406746-53406765 | Msa0647350:CDS | 50.0% | |
| CAGAAATCATGGGGCAGTGT+GGG | + | chr4_3:53406933-53406952 | Msa0647350:CDS | 50.0% | |
| GACACAAGTAGGGTTCCACA+AGG | + | chr4_3:53406955-53406974 | Msa0647350:CDS | 50.0% | |
| CACAAGTAGGGTTCCACAAG+GGG | + | chr4_3:53406957-53406976 | Msa0647350:CDS | 50.0% | |
| CGAAATTGCAATGCCCCTTG+TGG | - | chr4_3:53406973-53406992 | None:intergenic | 50.0% | |
| CAAGCAACGATCACAAGCAG+TGG | - | chr4_3:53405498-53405517 | None:intergenic | 50.0% | |
| TTATATGCAGCTGGGGCATG+TGG | + | chr4_3:53405644-53405663 | Msa0647350:intron | 50.0% | |
| GTGAAGAAACACCAGCTGCA+AGG | - | chr4_3:53405706-53405725 | None:intergenic | 50.0% | |
| TGGTTGTGGTGCTTGCTTTC+AGG | + | chr4_3:53405742-53405761 | Msa0647350:CDS | 50.0% | |
| GTGGGTCCAACCAAAAATGC+TGG | - | chr4_3:53406286-53406305 | None:intergenic | 50.0% | |
| ! | CTACTAGCTTAGGTGGGAAG+TGG | - | chr4_3:53406305-53406324 | None:intergenic | 50.0% |
| ! | CCACTGTCTACTAGCTTAGG+TGG | - | chr4_3:53406312-53406331 | None:intergenic | 50.0% |
| CCACCTAAGCTAGTAGACAG+TGG | + | chr4_3:53406309-53406328 | Msa0647350:intron | 50.0% | |
| ! | GTGCCACTGTCTACTAGCTT+AGG | - | chr4_3:53406315-53406334 | None:intergenic | 50.0% |
| GGGGGTCAAACAGAGATAGT+AGG | + | chr4_3:53406746-53406765 | Msa0647350:CDS | 50.0% | |
| CAGAAATCATGGGGCAGTGT+GGG | + | chr4_3:53406933-53406952 | Msa0647350:CDS | 50.0% | |
| GACACAAGTAGGGTTCCACA+AGG | + | chr4_3:53406955-53406974 | Msa0647350:CDS | 50.0% | |
| CACAAGTAGGGTTCCACAAG+GGG | + | chr4_3:53406957-53406976 | Msa0647350:CDS | 50.0% | |
| CGAAATTGCAATGCCCCTTG+TGG | - | chr4_3:53406973-53406992 | None:intergenic | 50.0% | |
| GCAGAAATCATGGGGCAGTG+TGG | + | chr4_3:53406932-53406951 | Msa0647350:CDS | 55.0% | |
| GGCAGTGTGGGACACAAGTA+GGG | + | chr4_3:53406945-53406964 | Msa0647350:CDS | 55.0% | |
| GCAGAAATCATGGGGCAGTG+TGG | + | chr4_3:53406932-53406951 | Msa0647350:CDS | 55.0% | |
| GGCAGTGTGGGACACAAGTA+GGG | + | chr4_3:53406945-53406964 | Msa0647350:CDS | 55.0% | |
| GCAGCTGGGGCATGTGGATA+TGG | + | chr4_3:53405650-53405669 | Msa0647350:intron | 60.0% | |
| !! | AGTGGTGGACACCTTGCAGC+TGG | + | chr4_3:53405692-53405711 | Msa0647350:CDS | 60.0% |
| GGGCAGTGTGGGACACAAGT+AGG | + | chr4_3:53406944-53406963 | Msa0647350:CDS | 60.0% | |
| GCAGCTGGGGCATGTGGATA+TGG | + | chr4_3:53405650-53405669 | Msa0647350:intron | 60.0% | |
| !! | AGTGGTGGACACCTTGCAGC+TGG | + | chr4_3:53405692-53405711 | Msa0647350:CDS | 60.0% |
| GGGCAGTGTGGGACACAAGT+AGG | + | chr4_3:53406944-53406963 | Msa0647350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53405385 | 53407343 | 53405385 | ID=Msa0647350;Name=Msa0647350 |
| chr4_3 | mRNA | 53405385 | 53407343 | 53405385 | ID=Msa0647350-mRNA-1;Parent=Msa0647350;Name=Msa0647350-mRNA-1;_AED=0.15;_eAED=0.15;_QI=64|1|1|1|1|1|5|194|260 |
| chr4_3 | exon | 53405385 | 53405563 | 53405385 | ID=Msa0647350-mRNA-1:exon:13335;Parent=Msa0647350-mRNA-1 |
| chr4_3 | exon | 53405654 | 53405763 | 53405654 | ID=Msa0647350-mRNA-1:exon:13336;Parent=Msa0647350-mRNA-1 |
| chr4_3 | exon | 53405988 | 53406166 | 53405988 | ID=Msa0647350-mRNA-1:exon:13337;Parent=Msa0647350-mRNA-1 |
| chr4_3 | exon | 53406652 | 53406784 | 53406652 | ID=Msa0647350-mRNA-1:exon:13338;Parent=Msa0647350-mRNA-1 |
| chr4_3 | exon | 53406904 | 53407343 | 53406904 | ID=Msa0647350-mRNA-1:exon:13339;Parent=Msa0647350-mRNA-1 |
| chr4_3 | five_prime_UTR | 53405385 | 53405448 | 53405385 | ID=Msa0647350-mRNA-1:five_prime_utr;Parent=Msa0647350-mRNA-1 |
| chr4_3 | CDS | 53405449 | 53405563 | 53405449 | ID=Msa0647350-mRNA-1:cds;Parent=Msa0647350-mRNA-1 |
| chr4_3 | CDS | 53405654 | 53405763 | 53405654 | ID=Msa0647350-mRNA-1:cds;Parent=Msa0647350-mRNA-1 |
| chr4_3 | CDS | 53405988 | 53406166 | 53405988 | ID=Msa0647350-mRNA-1:cds;Parent=Msa0647350-mRNA-1 |
| chr4_3 | CDS | 53406652 | 53406784 | 53406652 | ID=Msa0647350-mRNA-1:cds;Parent=Msa0647350-mRNA-1 |
| chr4_3 | CDS | 53406904 | 53407149 | 53406904 | ID=Msa0647350-mRNA-1:cds;Parent=Msa0647350-mRNA-1 |
| chr4_3 | three_prime_UTR | 53407150 | 53407343 | 53407150 | ID=Msa0647350-mRNA-1:three_prime_utr;Parent=Msa0647350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
