Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607470 | XP_003607334.1 | 77.586 | 58 | 13 | 0 | 1 | 58 | 540 | 597 | 1.65e-18 | 102 |
| Msa0607470 | XP_003607334.1 | 94.576 | 590 | 31 | 1 | 51 | 640 | 35 | 623 | 0.0 | 1111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607470 | Msa0647770 | 0.875253 | 3.564989e-68 | -8.615850e-47 |
| Msa0607470 | Msa0690480 | 0.915033 | 9.507856e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607470 | MtrunA17_Chr4g0039101 | 94.576 | 590 | 31 | 1 | 51 | 640 | 35 | 623 | 0.0 | 1111 |
| Msa0607470 | MtrunA17_Chr4g0039101 | 77.586 | 58 | 13 | 0 | 1 | 58 | 540 | 597 | 1.52e-22 | 102 |
| Msa0607470 | MtrunA17_Chr4g0039111 | 66.777 | 602 | 156 | 3 | 51 | 640 | 34 | 603 | 0.0 | 753 |
| Msa0607470 | MtrunA17_Chr4g0039111 | 70.690 | 58 | 17 | 0 | 1 | 58 | 520 | 577 | 1.32e-19 | 93.2 |
| Msa0607470 | MtrunA17_Chr4g0039091 | 80.000 | 85 | 17 | 0 | 552 | 636 | 1 | 85 | 9.81e-40 | 141 |
| Msa0607470 | MtrunA17_Chr4g0039091 | 72.414 | 58 | 16 | 0 | 1 | 58 | 6 | 63 | 4.20e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607470 | AT2G43250.1 | 47.712 | 612 | 270 | 8 | 51 | 636 | 35 | 622 | 6.74e-178 | 519 |
Find 134 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGAGAGAATGTAAATT+AGG | 0.180028 | 4_2:+54276777 | None:intergenic |
| TAGAATAGCTTTAAATAATA+AGG | 0.205721 | 4_2:-54275946 | Msa0607470:CDS |
| TTGCCTTGGGCTACATTTGC+AGG | 0.246779 | 4_2:-54275300 | Msa0607470:CDS |
| TTGGTACCTACTTCTTCTTT+TGG | 0.293805 | 4_2:-54276629 | Msa0607470:CDS |
| GTAAATTAGGGATTGGGAAT+TGG | 0.294193 | 4_2:+54276790 | None:intergenic |
| TAAATTAGGGATTGGGAATT+GGG | 0.304149 | 4_2:+54276791 | None:intergenic |
| AGCGTGTTGGCTTCTTGCCT+TGG | 0.305380 | 4_2:-54275314 | Msa0607470:CDS |
| ACGCAAAAGATGCAGCATTT+TGG | 0.314559 | 4_2:-54280232 | None:intergenic |
| AGAAGAGAGAATGTAAATTA+GGG | 0.323524 | 4_2:+54276778 | None:intergenic |
| AGAATAGCTTTAAATAATAA+GGG | 0.336252 | 4_2:-54275945 | Msa0607470:CDS |
| TTTCGATGAATAAAGATGTT+AGG | 0.339563 | 4_2:-54276274 | Msa0607470:CDS |
| GGTTGAGTTCTCGGAGCTTC+CGG | 0.343906 | 4_2:-54275880 | Msa0607470:CDS |
| ACAATCTCTTTAACATCATT+AGG | 0.344234 | 4_2:+54275729 | None:intergenic |
| GGTAGTAGTGATAATAATTC+TGG | 0.352463 | 4_2:-54276386 | Msa0607470:CDS |
| TTACGGATTCTGACGGTAAA+GGG | 0.353035 | 4_2:-54275695 | Msa0607470:CDS |
| TTGAATTCCACGACCCAAAC+TGG | 0.363401 | 4_2:+54275191 | None:intergenic |
| TACAACTATTGTGAATAGTT+TGG | 0.365489 | 4_2:-54276336 | Msa0607470:CDS |
| GTCTGTTTCGGAGGTGGGTT+CGG | 0.369465 | 4_2:-54276186 | Msa0607470:CDS |
| TTCAACGCCACGACCCAAAC+TGG | 0.373732 | 4_2:+54280096 | None:intergenic |
| GGCAAGTAAGGTTGAGTTCT+CGG | 0.381718 | 4_2:-54275889 | Msa0607470:CDS |
| TTGTTTCTCTATTGATCCCT+TGG | 0.385155 | 4_2:+54275078 | None:intergenic |
| GCGTGTTGGCTTCTTGCCTT+GGG | 0.393108 | 4_2:-54275313 | Msa0607470:CDS |
| CCTAGGTCCTTCTAATACAT+CGG | 0.396726 | 4_2:-54275469 | Msa0607470:CDS |
| AGTATAATCTTGAGTGAAGT+TGG | 0.406969 | 4_2:+54275522 | None:intergenic |
| AATGATGTTAAAGAGATTGT+TGG | 0.410713 | 4_2:-54275726 | Msa0607470:CDS |
| GGTGCTGTTATTGTTCAATC+TGG | 0.411054 | 4_2:-54276695 | Msa0607470:CDS |
| CTAGGTCCTTCTAATACATC+GGG | 0.413494 | 4_2:-54275468 | Msa0607470:CDS |
| ATTCTTGTTCAATCGCCGTT+AGG | 0.414808 | 4_2:-54276455 | Msa0607470:CDS |
| AGGTGTTTCCAAGGCAAGTA+AGG | 0.421393 | 4_2:-54275901 | Msa0607470:CDS |
| AGAGAATGTAAATTAGGGAT+TGG | 0.424401 | 4_2:+54276783 | None:intergenic |
| CAGCAGCAAGTTGCTTCGAT+TGG | 0.429335 | 4_2:-54276308 | Msa0607470:CDS |
| GAGAATGTAAATTAGGGATT+GGG | 0.430082 | 4_2:+54276784 | None:intergenic |
| AGAGGGTTTATCTAGCTATA+TGG | 0.430128 | 4_2:-54276240 | Msa0607470:CDS |
| TTGCCTTGGGCTAAATTTGA+AGG | 0.431606 | 4_2:-54280205 | Msa0607470:CDS |
| GAACTCAACCTTACTTGCCT+TGG | 0.433204 | 4_2:+54275893 | None:intergenic |
| CCGTTAGGGAATTCATGTTT+CGG | 0.440138 | 4_2:-54276440 | Msa0607470:CDS |
| ATAAACCTGTAGTTGCAGTT+GGG | 0.440694 | 4_2:-54275632 | Msa0607470:CDS |
| CCTGTAGTTGCAGTTGGGGC+TGG | 0.444774 | 4_2:-54275627 | Msa0607470:CDS |
| GATTGTTGGAGATTTAATTA+CGG | 0.453221 | 4_2:-54275712 | Msa0607470:CDS |
| TGTTAGGATGGTGTTGGCAG+AGG | 0.460756 | 4_2:-54276258 | Msa0607470:CDS |
| AAACAAGTGTTTCAGCTATG+AGG | 0.463234 | 4_2:-54275374 | Msa0607470:CDS |
| AAATGAGTCTGTTTCGGAGG+TGG | 0.463927 | 4_2:-54276192 | Msa0607470:CDS |
| ATGAAACCCGATGTATTAGA+AGG | 0.464559 | 4_2:+54275462 | None:intergenic |
| TTCTTGTTCAATCGCCGTTA+GGG | 0.466273 | 4_2:-54276454 | Msa0607470:CDS |
| TATTCACAATAGTTGTAAAA+CGG | 0.466843 | 4_2:+54276342 | None:intergenic |
| ATTACGGATTCTGACGGTAA+AGG | 0.467597 | 4_2:-54275696 | Msa0607470:CDS |
| GTCACAAGTGCTGTTTGCTC+AGG | 0.471429 | 4_2:-54275847 | Msa0607470:CDS |
| AAATTTACGAGAAGCGTCTC+AGG | 0.474706 | 4_2:-54275169 | Msa0607470:CDS |
| TCAATTGCCAGTTTGGGTCG+TGG | 0.475526 | 4_2:-54275198 | Msa0607470:CDS |
| TCAATTGCCAGTTTGGGTCG+TGG | 0.478035 | 4_2:-54280103 | Msa0607470:CDS |
| AGCGTCGGAGGAAGAACGTT+CGG | 0.478406 | 4_2:+54276745 | None:intergenic |
| ATGTTGTTGGATGTGAATAG+AGG | 0.480431 | 4_2:-54276032 | Msa0607470:CDS |
| AAAGGGGTTAGTTTAAATCA+TGG | 0.486981 | 4_2:-54275678 | Msa0607470:CDS |
| TTAGTACTACCAATCAAAAG+TGG | 0.487428 | 4_2:+54276215 | None:intergenic |
| TAAATCATGGTGACAGGAAG+CGG | 0.488492 | 4_2:-54275665 | Msa0607470:CDS |
| GATAAACCTGTAGTTGCAGT+TGG | 0.489376 | 4_2:-54275633 | Msa0607470:CDS |
| TCTGGTGCAATTGTTGATGC+TGG | 0.489937 | 4_2:-54276368 | Msa0607470:CDS |
| GATAGATATGAAACTGTTGC+TGG | 0.493066 | 4_2:-54276569 | Msa0607470:CDS |
| TTAGTTTAAATCATGGTGAC+AGG | 0.496208 | 4_2:-54275671 | Msa0607470:CDS |
| ACGACCCAAACTGGCAATTG+AGG | 0.497236 | 4_2:+54280105 | None:intergenic |
| CCGTCGATGAGGAAGGCGTT+GGG | 0.498233 | 4_2:-54276068 | Msa0607470:CDS |
| AATGAGTCTGTTTCGGAGGT+GGG | 0.502900 | 4_2:-54276191 | Msa0607470:CDS |
| CGACCCAAACTGGCAATTGA+GGG | 0.505588 | 4_2:+54275201 | None:intergenic |
| CGACCCAAACTGGCAATTGA+GGG | 0.510525 | 4_2:+54280106 | None:intergenic |
| GTTAGGATGGTGTTGGCAGA+GGG | 0.512429 | 4_2:-54276257 | Msa0607470:CDS |
| GCTAAATTTGAAGGCAGCAT+AGG | 0.520497 | 4_2:-54280196 | Msa0607470:CDS |
| TGATTTACCGTCGATGAGGA+AGG | 0.522186 | 4_2:-54276075 | Msa0607470:CDS |
| GGCAGCATCGGAACTTGCAC+AGG | 0.522882 | 4_2:-54275279 | Msa0607470:CDS |
| ACGACCCAAACTGGCAATTG+AGG | 0.529521 | 4_2:+54275200 | None:intergenic |
| AGCAACAATAATGATAATCA+TGG | 0.535340 | 4_2:-54276407 | Msa0607470:CDS |
| TAATACATCGGGTTTCATGA+AGG | 0.539186 | 4_2:-54275457 | Msa0607470:CDS |
| GTTGATGCTAGTGCCTTAGC+AGG | 0.539931 | 4_2:-54275780 | Msa0607470:CDS |
| GTCGATTTATCCATTGCTTG+AGG | 0.541045 | 4_2:-54276117 | Msa0607470:CDS |
| CCAGCCCCAACTGCAACTAC+AGG | 0.541510 | 4_2:+54275627 | None:intergenic |
| AAATCTACGTGAATCATCTC+AGG | 0.541760 | 4_2:-54280074 | Msa0607470:CDS |
| ACCGTCGATGAGGAAGGCGT+TGG | 0.542815 | 4_2:-54276069 | Msa0607470:CDS |
| TCTTTAACATCATTAGGAAG+AGG | 0.544265 | 4_2:+54275735 | None:intergenic |
| GCTACATTTGCAGGCAGCAT+CGG | 0.544965 | 4_2:-54275291 | Msa0607470:CDS |
| AACAAGTGTTTCAGCTATGA+GGG | 0.546847 | 4_2:-54275373 | Msa0607470:CDS |
| GATGAATAAAGATGTTAGGA+TGG | 0.552168 | 4_2:-54276270 | Msa0607470:CDS |
| TAAATCGACTTCGCAAATGC+AGG | 0.553225 | 4_2:+54276131 | None:intergenic |
| CCGATGTATTAGAAGGACCT+AGG | 0.554405 | 4_2:+54275469 | None:intergenic |
| TGTTGTTGGATGTGAATAGA+GGG | 0.556728 | 4_2:-54276031 | Msa0607470:CDS |
| TGTTGAGAAAGGTGTTTCCA+AGG | 0.556731 | 4_2:-54275910 | Msa0607470:CDS |
| AGGAGCATCTTCTCTAACCA+AGG | 0.556826 | 4_2:-54275589 | Msa0607470:CDS |
| CCTTCGTCAGTGTCGACATA+GGG | 0.558095 | 4_2:+54275562 | None:intergenic |
| TAGCAGGTATTAGAAAACAC+TGG | 0.559169 | 4_2:-54275764 | Msa0607470:CDS |
| TGATGCTAGAACTGTTTCTG+AGG | 0.561439 | 4_2:-54276000 | Msa0607470:CDS |
| ATCGAAGCAACTTGCTGCTG+AGG | 0.563278 | 4_2:+54276311 | None:intergenic |
| CTGCCTTCAAATTTAGCCCA+AGG | 0.564057 | 4_2:+54280202 | None:intergenic |
| CAGCATTCTATGAAATAATG+AGG | 0.564757 | 4_2:-54275350 | Msa0607470:CDS |
| TTGCTTCGATTGGTTTGAAG+AGG | 0.566940 | 4_2:-54276298 | Msa0607470:CDS |
| ATGCAGTCGATTGTTGAGAA+AGG | 0.567941 | 4_2:-54275921 | Msa0607470:CDS |
| TCATGTGCAGAAGATGTTGT+TGG | 0.568961 | 4_2:-54276045 | Msa0607470:CDS |
| TCATGTAAATCCTCAAGCAA+TGG | 0.571361 | 4_2:+54276107 | None:intergenic |
| ATTGATGAGTGCGATAGCGT+CGG | 0.571724 | 4_2:+54276730 | None:intergenic |
| GATTTAATTACGGATTCTGA+CGG | 0.573702 | 4_2:-54275702 | Msa0607470:CDS |
| TGATAAGTTTAAAACAATTG+TGG | 0.574714 | 4_2:-54275808 | Msa0607470:CDS |
| TAAACAGAATAACAAAGCCA+AGG | 0.575384 | 4_2:-54275095 | Msa0607470:CDS |
| CTCATCAATGAAATCAAACC+TGG | 0.577587 | 4_2:-54276716 | Msa0607470:CDS |
| GCTGTTATTGTTCAATCTGG+TGG | 0.581680 | 4_2:-54276692 | Msa0607470:CDS |
| GACCCAAACTGGCAATTGAG+GGG | 0.581848 | 4_2:+54275202 | None:intergenic |
| ACCTTCGTCAGTGTCGACAT+AGG | 0.582109 | 4_2:+54275561 | None:intergenic |
| AAGATTAGAGCCGTTACTCA+CGG | 0.584256 | 4_2:-54275417 | Msa0607470:CDS |
| TGAGTTCTCGGAGCTTCCGG+TGG | 0.585469 | 4_2:-54275877 | Msa0607470:CDS |
| ATAACACCAAAAGAAGAAGT+AGG | 0.586648 | 4_2:+54276623 | None:intergenic |
| GACCCAAACTGGCAATTGAG+GGG | 0.586878 | 4_2:+54280107 | None:intergenic |
| TAAACCTGTAGTTGCAGTTG+GGG | 0.587810 | 4_2:-54275631 | Msa0607470:CDS |
| GATGAGTGCGATAGCGTCGG+AGG | 0.588491 | 4_2:+54276733 | None:intergenic |
| CGATGTATTAGAAGGACCTA+GGG | 0.590121 | 4_2:+54275470 | None:intergenic |
| AAGCGAAAGATGCAGCGTGT+TGG | 0.593479 | 4_2:-54275327 | Msa0607470:CDS |
| ACTTGTGACTTGTCATCCAC+CGG | 0.593933 | 4_2:+54275861 | None:intergenic |
| GTATATAACACCGTGAGTAA+CGG | 0.594372 | 4_2:+54275407 | None:intergenic |
| GAATAGCTTTAAATAATAAG+GGG | 0.595173 | 4_2:-54275944 | Msa0607470:CDS |
| AGCAGGTATTAGAAAACACT+GGG | 0.604153 | 4_2:-54275763 | Msa0607470:CDS |
| CAGGCAGTGATGCAGACAGA+AGG | 0.606093 | 4_2:-54275150 | Msa0607470:CDS |
| CTGCCTGCAAATGTAGCCCA+AGG | 0.610402 | 4_2:+54275297 | None:intergenic |
| GATTGAACAATAACAGCACC+AGG | 0.612363 | 4_2:+54276698 | None:intergenic |
| CCCAAACTGGCAATTGAGGG+GGG | 0.613038 | 4_2:+54280109 | None:intergenic |
| TACGGATTCTGACGGTAAAG+GGG | 0.615997 | 4_2:-54275694 | Msa0607470:CDS |
| ACCCAAACTGGCAATTGAGG+GGG | 0.629502 | 4_2:+54280108 | None:intergenic |
| AAAGTACTGAGTGTTTCCCT+AGG | 0.630981 | 4_2:-54275486 | Msa0607470:CDS |
| AAACAGAATAACAAAGCCAA+GGG | 0.634684 | 4_2:-54275094 | Msa0607470:CDS |
| TAAAGATGTTAGGATGGTGT+TGG | 0.637908 | 4_2:-54276264 | Msa0607470:CDS |
| CCGAAACATGAATTCCCTAA+CGG | 0.639732 | 4_2:+54276440 | None:intergenic |
| ACCCAAACTGGCAATTGAGG+GGG | 0.640771 | 4_2:+54275203 | None:intergenic |
| TGACAGGAAGCGGTTGCTAG+CGG | 0.648173 | 4_2:-54275655 | Msa0607470:CDS |
| CCCTATGTCGACACTGACGA+AGG | 0.675430 | 4_2:-54275562 | Msa0607470:CDS |
| CCCAACGCCTTCCTCATCGA+CGG | 0.675584 | 4_2:+54276068 | None:intergenic |
| GTTGTTGGATGTGAATAGAG+GGG | 0.678534 | 4_2:-54276030 | Msa0607470:CDS |
| TGTCGACATAGGGACTACCT+TGG | 0.686794 | 4_2:+54275572 | None:intergenic |
| TTTCTGATTTACCGTCGATG+AGG | 0.686801 | 4_2:-54276079 | Msa0607470:CDS |
| CGGAGGAAGAACGTTCGGAG+AGG | 0.692446 | 4_2:+54276750 | None:intergenic |
| TCTACGTGAATCATCTCAGG+CGG | 0.693442 | 4_2:-54280071 | Msa0607470:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATTTGAGAATATT+CGG | + | chr4_2:54277737-54277756 | None:intergenic | 10.0% |
| !!! | TTATACTTTTTTTTTTTAAG+TGG | + | chr4_2:54278082-54278101 | None:intergenic | 10.0% |
| !! | TAACTTTGAATTTAATACAT+TGG | - | chr4_2:54275837-54275856 | Msa0607470:CDS | 15.0% |
| !! | AATAAGATATTAAATGACTA+AGG | + | chr4_2:54276019-54276038 | None:intergenic | 15.0% |
| !! | GATTGAATGATAATATTAAT+AGG | + | chr4_2:54277228-54277247 | None:intergenic | 15.0% |
| !!! | ATTTTTTTAGTATTACATTC+CGG | + | chr4_2:54277440-54277459 | None:intergenic | 15.0% |
| !!! | TTTGACATGATTTATTTTAA+GGG | - | chr4_2:54277632-54277651 | Msa0607470:intron | 15.0% |
| !!! | TAAAAAGTATCTTTTTTTTG+TGG | - | chr4_2:54277755-54277774 | Msa0607470:intron | 15.0% |
| !!! | ATAAATTTTATCATTCATTG+CGG | - | chr4_2:54278181-54278200 | Msa0607470:intron | 15.0% |
| !!! | TAGAATAGCTTTAAATAATA+AGG | - | chr4_2:54279363-54279382 | Msa0607470:intron | 15.0% |
| !!! | AGAATAGCTTTAAATAATAA+GGG | - | chr4_2:54279364-54279383 | Msa0607470:intron | 15.0% |
| !! | TAATAAGTCAAAATCAGATA+AGG | + | chr4_2:54275665-54275684 | None:intergenic | 20.0% |
| !! | AAATTCAAAGTTAAAGATAC+TGG | + | chr4_2:54275830-54275849 | None:intergenic | 20.0% |
| !! | TTAAAAAGTGACACTTAAAA+AGG | + | chr4_2:54275922-54275941 | None:intergenic | 20.0% |
| !! | CAGAAGAAAAAAAATTGTAA+TGG | + | chr4_2:54276453-54276472 | None:intergenic | 20.0% |
| !! | AAAAAGATACAGTATTTAAC+AGG | + | chr4_2:54276530-54276549 | None:intergenic | 20.0% |
| !!! | TAAATACTGTATCTTTTTCT+AGG | - | chr4_2:54276532-54276551 | Msa0607470:CDS | 20.0% |
| !! | AAAACGAATTTCATTTATGT+CGG | - | chr4_2:54276858-54276877 | Msa0607470:intron | 20.0% |
| !! | TGCATAACTGATAATTTAAA+AGG | - | chr4_2:54277098-54277117 | Msa0607470:intron | 20.0% |
| !! | TTATTTCATAGGAATTTCAT+TGG | + | chr4_2:54277186-54277205 | None:intergenic | 20.0% |
| !!! | TCAATCATAGTACATTTTTT+AGG | - | chr4_2:54277242-54277261 | Msa0607470:intron | 20.0% |
| !!! | CAATCATAGTACATTTTTTA+GGG | - | chr4_2:54277243-54277262 | Msa0607470:intron | 20.0% |
| !!! | CATTTTAAAATTGAGTGAAT+GGG | + | chr4_2:54277363-54277382 | None:intergenic | 20.0% |
| !!! | ACATTTTAAAATTGAGTGAA+TGG | + | chr4_2:54277364-54277383 | None:intergenic | 20.0% |
| !!! | TTCACTCAATTTTAAAATGT+AGG | - | chr4_2:54277364-54277383 | Msa0607470:intron | 20.0% |
| !!! | AATTTTAAAATGTAGGAAAG+TGG | - | chr4_2:54277371-54277390 | Msa0607470:intron | 20.0% |
| !!! | ATTTTAAAATGTAGGAAAGT+GGG | - | chr4_2:54277372-54277391 | Msa0607470:intron | 20.0% |
| !!! | CTTTGACATGATTTATTTTA+AGG | - | chr4_2:54277631-54277650 | Msa0607470:intron | 20.0% |
| !!! | CTTTTGAAAAGGTTTTTTTT+TGG | + | chr4_2:54277876-54277895 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTTTTAAGTGGA+GGG | + | chr4_2:54278078-54278097 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTTTTTAAGTGG+AGG | + | chr4_2:54278079-54278098 | None:intergenic | 20.0% |
| !!! | ATTTTCAAACACAATTTGTT+GGG | + | chr4_2:54278109-54278128 | None:intergenic | 20.0% |
| !! | TATTCACAATAGTTGTAAAA+CGG | + | chr4_2:54278970-54278989 | None:intergenic | 20.0% |
| !!! | GAATAGCTTTAAATAATAAG+GGG | - | chr4_2:54279365-54279384 | Msa0607470:intron | 20.0% |
| !!! | TGATAAGTTTAAAACAATTG+TGG | - | chr4_2:54279501-54279520 | Msa0607470:intron | 20.0% |
| ! | TCTTGTAAACAGAATAAGAA+AGG | - | chr4_2:54275296-54275315 | Msa0607470:CDS | 25.0% |
| ! | ACATCTATTCTACTATTCTT+TGG | - | chr4_2:54275586-54275605 | Msa0607470:CDS | 25.0% |
| !!! | TTGGTGTTGAAGAAATTTTT+TGG | - | chr4_2:54275605-54275624 | Msa0607470:CDS | 25.0% |
| ! | TCTCCACAATAAATAACTAA+GGG | - | chr4_2:54276052-54276071 | Msa0607470:CDS | 25.0% |
| ! | TTACCCTTAGTTATTTATTG+TGG | + | chr4_2:54276058-54276077 | None:intergenic | 25.0% |
| ! | TAAATAACTAAGGGTAATGT+TGG | - | chr4_2:54276061-54276080 | Msa0607470:CDS | 25.0% |
| ! | TTTGAAAGTGACAGTTAAAT+AGG | - | chr4_2:54276112-54276131 | Msa0607470:CDS | 25.0% |
| ! | TTCAAAAGTGACACTTAAAA+AGG | - | chr4_2:54276148-54276167 | Msa0607470:CDS | 25.0% |
| !!! | TGCTATTACATTTTTTGCTT+TGG | + | chr4_2:54276202-54276221 | None:intergenic | 25.0% |
| ! | TTCCATATTATCAAACTAGA+GGG | + | chr4_2:54276297-54276316 | None:intergenic | 25.0% |
| ! | TGATAATATGGAAGAGAATT+TGG | - | chr4_2:54276304-54276323 | Msa0607470:CDS | 25.0% |
| !!! | ACTAGTTTTAAAAACAATGC+AGG | + | chr4_2:54276360-54276379 | None:intergenic | 25.0% |
| !!! | TGCATTGTTTTTAAAACTAG+TGG | - | chr4_2:54276359-54276378 | Msa0607470:CDS | 25.0% |
| !!! | TTGTTTTTAAAACTAGTGGA+AGG | - | chr4_2:54276363-54276382 | Msa0607470:CDS | 25.0% |
| !!! | TGTTTTTAAAACTAGTGGAA+GGG | - | chr4_2:54276364-54276383 | Msa0607470:CDS | 25.0% |
| ! | AGAAAATTCATCAATGACTA+TGG | + | chr4_2:54276767-54276786 | None:intergenic | 25.0% |
| !! | GACATAAATGAAATTCGTTT+TGG | + | chr4_2:54276859-54276878 | None:intergenic | 25.0% |
| ! | TGATACAAAATAAAAGACCA+AGG | + | chr4_2:54277064-54277083 | None:intergenic | 25.0% |
| ! | AAAGAGTTATCACTTATCAA+TGG | - | chr4_2:54277133-54277152 | Msa0607470:intron | 25.0% |
| ! | GTTAAGTGGTATTATTTCAT+AGG | + | chr4_2:54277197-54277216 | None:intergenic | 25.0% |
| ! | TGAAATAATACCACTTAACA+TGG | - | chr4_2:54277198-54277217 | Msa0607470:intron | 25.0% |
| ! | GAAATAATACCACTTAACAT+GGG | - | chr4_2:54277199-54277218 | Msa0607470:intron | 25.0% |
| ! | AAATAATACCACTTAACATG+GGG | - | chr4_2:54277200-54277219 | Msa0607470:intron | 25.0% |
| ! | AGATAAAAATTGAATACCCA+TGG | + | chr4_2:54277575-54277594 | None:intergenic | 25.0% |
| !!! | TGAAAAGGTTTTTTTTTGGA+AGG | + | chr4_2:54277872-54277891 | None:intergenic | 25.0% |
| !! | AAAAAACCTTTTCAAAAGTG+TGG | - | chr4_2:54277878-54277897 | Msa0607470:intron | 25.0% |
| !! | GATTTTCAAACACAATTTGT+TGG | + | chr4_2:54278110-54278129 | None:intergenic | 25.0% |
| ! | TCCGACAAAAAAGAATATAT+AGG | - | chr4_2:54278230-54278249 | Msa0607470:intron | 25.0% |
| !!! | CCCTATATATTCTTTTTTGT+CGG | + | chr4_2:54278234-54278253 | None:intergenic | 25.0% |
| ! | CCGACAAAAAAGAATATATA+GGG | - | chr4_2:54278231-54278250 | Msa0607470:intron | 25.0% |
| ! | AAAAAAGAATATATAGGGAG+TGG | - | chr4_2:54278236-54278255 | Msa0607470:intron | 25.0% |
| ! | AGAAGAGAGAATGTAAATTA+GGG | + | chr4_2:54278534-54278553 | None:intergenic | 25.0% |
| !! | GGATGAAAAAGATGATATTT+TGG | - | chr4_2:54278661-54278680 | Msa0607470:intron | 25.0% |
| !!! | CGTTGTTTTGTTGATAAAAT+TGG | - | chr4_2:54278713-54278732 | Msa0607470:intron | 25.0% |
| !! | TTTGTTCTTAAGGAGATTTT+TGG | - | chr4_2:54278767-54278786 | Msa0607470:intron | 25.0% |
| ! | AAAAAAGCTGCTAAATTTGT+TGG | - | chr4_2:54278821-54278840 | Msa0607470:intron | 25.0% |
| ! | AGCAACAATAATGATAATCA+TGG | - | chr4_2:54278902-54278921 | Msa0607470:intron | 25.0% |
| ! | TACAACTATTGTGAATAGTT+TGG | - | chr4_2:54278973-54278992 | Msa0607470:intron | 25.0% |
| ! | TTTCGATGAATAAAGATGTT+AGG | - | chr4_2:54279035-54279054 | Msa0607470:intron | 25.0% |
| ! | TACTAAAAATGAGTCTGTTT+CGG | - | chr4_2:54279111-54279130 | Msa0607470:intron | 25.0% |
| !!! | GGTTTATTCTTTTAGAATTG+CGG | - | chr4_2:54279330-54279349 | Msa0607470:intron | 25.0% |
| !!! | TTGTTTTAAACTTATCAGTC+TGG | + | chr4_2:54279498-54279517 | None:intergenic | 25.0% |
| ! | ACAATCTCTTTAACATCATT+AGG | + | chr4_2:54279583-54279602 | None:intergenic | 25.0% |
| ! | AATGATGTTAAAGAGATTGT+TGG | - | chr4_2:54279583-54279602 | Msa0607470:intron | 25.0% |
| ! | GATTGTTGGAGATTTAATTA+CGG | - | chr4_2:54279597-54279616 | Msa0607470:intron | 25.0% |
| !!! | CAAGAGATTCTATTGATTTT+TGG | + | chr4_2:54280194-54280213 | None:intergenic | 25.0% |
| TAAACAGAATAAGAAAGGCA+AGG | - | chr4_2:54275301-54275320 | Msa0607470:CDS | 30.0% | |
| AAACAGAATAAGAAAGGCAA+GGG | - | chr4_2:54275302-54275321 | Msa0607470:CDS | 30.0% | |
| ! | TTTTGACATAGAGTTGTTTG+TGG | - | chr4_2:54275350-54275369 | Msa0607470:CDS | 30.0% |
| ! | TTGTGGTTTTCTTCATGAAT+TGG | - | chr4_2:54275367-54275386 | Msa0607470:CDS | 30.0% |
| ! | ATAATTTTCTGTTGCAGATC+TGG | - | chr4_2:54275431-54275450 | Msa0607470:CDS | 30.0% |
| ! | GATTTGAAACTATAGCACAA+TGG | + | chr4_2:54275563-54275582 | None:intergenic | 30.0% |
| !!! | GAAATTTTTTGGAGCATCTT+TGG | - | chr4_2:54275616-54275635 | Msa0607470:CDS | 30.0% |
| GTTCATATTAACCCTTGAAT+TGG | - | chr4_2:54275638-54275657 | Msa0607470:CDS | 30.0% | |
| GACATAAACTGTAGGAATTT+GGG | + | chr4_2:54275768-54275787 | None:intergenic | 30.0% | |
| !!! | TACATTGGATTTTGATTCTC+TGG | - | chr4_2:54275852-54275871 | Msa0607470:CDS | 30.0% |
| AAGTGACACTTAAAAAGGAA+CGG | + | chr4_2:54276153-54276172 | None:intergenic | 30.0% | |
| GTAACATTTATTGAGTGTCT+TGG | + | chr4_2:54275958-54275977 | None:intergenic | 30.0% | |
| CTCTCCACAATAAATAACTA+AGG | - | chr4_2:54276051-54276070 | Msa0607470:CDS | 30.0% | |
| AAGTGACACTTAAAAAGGAA+CGG | - | chr4_2:54276153-54276172 | Msa0607470:CDS | 30.0% | |
| ! | TTCCCTCTAGTTTGATAATA+TGG | - | chr4_2:54276292-54276311 | Msa0607470:CDS | 30.0% |
| CTTCCATATTATCAAACTAG+AGG | + | chr4_2:54276298-54276317 | None:intergenic | 30.0% | |
| !! | TTTTAAAAACAATGCAGGAC+AGG | + | chr4_2:54276355-54276374 | None:intergenic | 30.0% |
| !!! | GTTTTTAAAACTAGTGGAAG+GGG | - | chr4_2:54276365-54276384 | Msa0607470:CDS | 30.0% |
| !!! | TTTTTAAAACTAGTGGAAGG+GGG | - | chr4_2:54276366-54276385 | Msa0607470:CDS | 30.0% |
| AATCAGATCTTCTCTACAAA+TGG | + | chr4_2:54276507-54276526 | None:intergenic | 30.0% | |
| ! | AGAATAAAGGGAGTGTAATT+GGG | + | chr4_2:54276607-54276626 | None:intergenic | 30.0% |
| ! | AAGAATAAAGGGAGTGTAAT+TGG | + | chr4_2:54276608-54276627 | None:intergenic | 30.0% |
| ACTCCCTTTATTCTTTGAAT+TGG | - | chr4_2:54276613-54276632 | Msa0607470:CDS | 30.0% | |
| CTCCCTTTATTCTTTGAATT+GGG | - | chr4_2:54276614-54276633 | Msa0607470:CDS | 30.0% | |
| CACCCAATTCAAAGAATAAA+GGG | + | chr4_2:54276619-54276638 | None:intergenic | 30.0% | |
| ACACCCAATTCAAAGAATAA+AGG | + | chr4_2:54276620-54276639 | None:intergenic | 30.0% | |
| !! | AATGAAATTCGTTTTGGTAC+AGG | + | chr4_2:54276853-54276872 | None:intergenic | 30.0% |
| ATAAAAACACGTATCCAAGT+TGG | - | chr4_2:54276884-54276903 | Msa0607470:intron | 30.0% | |
| TCTAAATGATGTTGCCAATT+TGG | - | chr4_2:54276907-54276926 | Msa0607470:intron | 30.0% | |
| AAATGATAGAACAGAGTTCA+TGG | - | chr4_2:54276966-54276985 | Msa0607470:intron | 30.0% | |
| ! | AGACTGTAATGTTGATTATG+TGG | - | chr4_2:54276990-54277009 | Msa0607470:intron | 30.0% |
| TTAATACACTTTGTAGACCT+TGG | - | chr4_2:54277044-54277063 | Msa0607470:intron | 30.0% | |
| TTATCAATGGATGTTTCATG+TGG | - | chr4_2:54277146-54277165 | Msa0607470:intron | 30.0% | |
| GAAAGAAATTGTCATGCATT+AGG | + | chr4_2:54277273-54277292 | None:intergenic | 30.0% | |
| TACATTCCGGATAAATAATG+TGG | + | chr4_2:54277427-54277446 | None:intergenic | 30.0% | |
| AAAATTGAATACCCATGGTA+TGG | + | chr4_2:54277570-54277589 | None:intergenic | 30.0% | |
| ! | ATTTTTATCTCGCTTACGTT+TGG | - | chr4_2:54277585-54277604 | Msa0607470:intron | 30.0% |
| GAATATTCGGACTAAGTTAT+TGG | + | chr4_2:54277724-54277743 | None:intergenic | 30.0% | |
| CATAATATATGCAAGGTCTA+GGG | + | chr4_2:54277796-54277815 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr4_2:54277803-54277822 | None:intergenic | 30.0% | |
| ! | ATATGTGAGTTTAGCTCAAT+TGG | + | chr4_2:54277830-54277849 | None:intergenic | 30.0% |
| !! | ACTTTTCCACACTTTTGAAA+AGG | + | chr4_2:54277887-54277906 | None:intergenic | 30.0% |
| ! | AATTTTATCATTCATTGCGG+TGG | - | chr4_2:54278184-54278203 | Msa0607470:intron | 30.0% |
| TAAATTAGGGATTGGGAATT+GGG | + | chr4_2:54278521-54278540 | None:intergenic | 30.0% | |
| GAGAATGTAAATTAGGGATT+GGG | + | chr4_2:54278528-54278547 | None:intergenic | 30.0% | |
| AGAGAATGTAAATTAGGGAT+TGG | + | chr4_2:54278529-54278548 | None:intergenic | 30.0% | |
| GAGAAGAGAGAATGTAAATT+AGG | + | chr4_2:54278535-54278554 | None:intergenic | 30.0% | |
| ! | TTTTTCATCCTCTTCAAAAG+GGG | + | chr4_2:54278651-54278670 | None:intergenic | 30.0% |
| !! | CTTTTTCATCCTCTTCAAAA+GGG | + | chr4_2:54278652-54278671 | None:intergenic | 30.0% |
| !! | TCTTTTTCATCCTCTTCAAA+AGG | + | chr4_2:54278653-54278672 | None:intergenic | 30.0% |
| ATAACACCAAAAGAAGAAGT+AGG | + | chr4_2:54278689-54278708 | None:intergenic | 30.0% | |
| !!! | TTAAGGAGATTTTTGGTACT+GGG | - | chr4_2:54278774-54278793 | Msa0607470:intron | 30.0% |
| !!! | ATTTTTGGTACTGGGTTTTA+TGG | - | chr4_2:54278782-54278801 | Msa0607470:intron | 30.0% |
| GGTAGTAGTGATAATAATTC+TGG | - | chr4_2:54278923-54278942 | Msa0607470:intron | 30.0% | |
| GATGAATAAAGATGTTAGGA+TGG | - | chr4_2:54279039-54279058 | Msa0607470:intron | 30.0% | |
| !! | TATATGGATCCACTTTTGAT+TGG | - | chr4_2:54279085-54279104 | Msa0607470:intron | 30.0% |
| TTAGTACTACCAATCAAAAG+TGG | + | chr4_2:54279097-54279116 | None:intergenic | 30.0% | |
| TCTTTAACATCATTAGGAAG+AGG | + | chr4_2:54279577-54279596 | None:intergenic | 30.0% | |
| GATTTAATTACGGATTCTGA+CGG | - | chr4_2:54279607-54279626 | Msa0607470:intron | 30.0% | |
| !! | AAAGGGGTTAGTTTAAATCA+TGG | - | chr4_2:54279631-54279650 | Msa0607470:intron | 30.0% |
| TTAGTTTAAATCATGGTGAC+AGG | - | chr4_2:54279638-54279657 | Msa0607470:intron | 30.0% | |
| AGTATAATCTTGAGTGAAGT+TGG | + | chr4_2:54279790-54279809 | None:intergenic | 30.0% | |
| CAGCATTCTATGAAATAATG+AGG | - | chr4_2:54279959-54279978 | Msa0607470:intron | 30.0% | |
| TAAACAGAATAACAAAGCCA+AGG | - | chr4_2:54280214-54280233 | Msa0607470:CDS | 30.0% | |
| AAACAGAATAACAAAGCCAA+GGG | - | chr4_2:54280215-54280234 | Msa0607470:CDS | 30.0% | |
| !!! | TGCACAACCTTGCTTTTTTA+TGG | - | chr4_2:54275140-54275159 | Msa0607470:CDS | 35.0% |
| !!! | ACCTTGCTTTTTTATGGTGA+TGG | - | chr4_2:54275146-54275165 | Msa0607470:CDS | 35.0% |
| !!! | CCTTGCTTTTTTATGGTGAT+GGG | - | chr4_2:54275147-54275166 | Msa0607470:CDS | 35.0% |
| AAATCTACGTGAATCATCTC+AGG | - | chr4_2:54275235-54275254 | Msa0607470:CDS | 35.0% | |
| ! | TGAATTGGTGATAACCTGAT+TGG | - | chr4_2:54275382-54275401 | Msa0607470:CDS | 35.0% |
| GCAGTGCTTAGCTTAATATT+AGG | - | chr4_2:54275463-54275482 | Msa0607470:CDS | 35.0% | |
| GAAACTATAGCACAATGGTT+AGG | + | chr4_2:54275558-54275577 | None:intergenic | 35.0% | |
| TCAGATAAGGACCAATTCAA+GGG | + | chr4_2:54275652-54275671 | None:intergenic | 35.0% | |
| ATCAGATAAGGACCAATTCA+AGG | + | chr4_2:54275653-54275672 | None:intergenic | 35.0% | |
| GGACATAAACTGTAGGAATT+TGG | + | chr4_2:54275769-54275788 | None:intergenic | 35.0% | |
| AATTCCTACAGTTTATGTCC+TGG | - | chr4_2:54275769-54275788 | Msa0607470:CDS | 35.0% | |
| AATTCCAGGACATAAACTGT+AGG | + | chr4_2:54275776-54275795 | None:intergenic | 35.0% | |
| GCACGTGTATATATAATTCC+AGG | + | chr4_2:54275790-54275809 | None:intergenic | 35.0% | |
| AAGTTGCAAAAAGGAATAGG+TGG | + | chr4_2:54276722-54276741 | None:intergenic | 35.0% | |
| ! | ACCTATTCCTTTTTGCAACT+TGG | - | chr4_2:54276721-54276740 | Msa0607470:CDS | 35.0% |
| ! | CCTATTCCTTTTTGCAACTT+GGG | - | chr4_2:54276722-54276741 | Msa0607470:CDS | 35.0% |
| CATTAACCCAAGTTGCAAAA+AGG | + | chr4_2:54276731-54276750 | None:intergenic | 35.0% | |
| CAGTTTGAGAAATCATCTCA+CGG | - | chr4_2:54276799-54276818 | Msa0607470:CDS | 35.0% | |
| CAACATCATTTAGACCAACT+TGG | + | chr4_2:54276901-54276920 | None:intergenic | 35.0% | |
| TCATAGTCTACAGTCCAAAT+TGG | + | chr4_2:54276924-54276943 | None:intergenic | 35.0% | |
| ! | ATGTTGATTATGTGGTTGTG+AGG | - | chr4_2:54276998-54277017 | Msa0607470:intron | 35.0% |
| TTAAAATGTAGGAAAGTGGG+AGG | - | chr4_2:54277375-54277394 | Msa0607470:intron | 35.0% | |
| TGAGGACCACATTATTTATC+CGG | - | chr4_2:54277418-54277437 | Msa0607470:intron | 35.0% | |
| ! | TTTTCAACTTAGCCATACCA+TGG | - | chr4_2:54277555-54277574 | Msa0607470:intron | 35.0% |
| TTTCAACTTAGCCATACCAT+GGG | - | chr4_2:54277556-54277575 | Msa0607470:intron | 35.0% | |
| !!! | ATCTTTTTTTTGTGGTGTCC+AGG | - | chr4_2:54277763-54277782 | Msa0607470:intron | 35.0% |
| !!! | TCTTTTTTTTGTGGTGTCCA+GGG | - | chr4_2:54277764-54277783 | Msa0607470:intron | 35.0% |
| GCATAATATATGCAAGGTCT+AGG | + | chr4_2:54277797-54277816 | None:intergenic | 35.0% | |
| ! | TGAGTTTAGCTCAATTGGTA+AGG | + | chr4_2:54277825-54277844 | None:intergenic | 35.0% |
| TATGGAATCTCCAAAACCTA+TGG | - | chr4_2:54278387-54278406 | Msa0607470:intron | 35.0% | |
| AAAAGCGAAAACGAACTGTT+TGG | + | chr4_2:54278492-54278511 | None:intergenic | 35.0% | |
| GTAAATTAGGGATTGGGAAT+TGG | + | chr4_2:54278522-54278541 | None:intergenic | 35.0% | |
| CTCATCAATGAAATCAAACC+TGG | - | chr4_2:54278593-54278612 | Msa0607470:intron | 35.0% | |
| ! | TTGGTACCTACTTCTTCTTT+TGG | - | chr4_2:54278680-54278699 | Msa0607470:intron | 35.0% |
| GATAGATATGAAACTGTTGC+TGG | - | chr4_2:54278740-54278759 | Msa0607470:intron | 35.0% | |
| ! | TGCTGGTGATTTTGTTCTTA+AGG | - | chr4_2:54278757-54278776 | Msa0607470:intron | 35.0% |
| !!! | CTTAAGGAGATTTTTGGTAC+TGG | - | chr4_2:54278773-54278792 | Msa0607470:intron | 35.0% |
| !!! | GCTTTTTTAGCAGCTAAAAC+AGG | + | chr4_2:54278809-54278828 | None:intergenic | 35.0% |
| TAAAGATGTTAGGATGGTGT+TGG | - | chr4_2:54279045-54279064 | Msa0607470:intron | 35.0% | |
| AGAGGGTTTATCTAGCTATA+TGG | - | chr4_2:54279069-54279088 | Msa0607470:intron | 35.0% | |
| TAAAAATGAGTCTGTTTCGG+AGG | - | chr4_2:54279114-54279133 | Msa0607470:intron | 35.0% | |
| ! | GGTGTATCATAACGAGTTTT+CGG | + | chr4_2:54279160-54279179 | None:intergenic | 35.0% |
| TCATGTAAATCCTCAAGCAA+TGG | + | chr4_2:54279205-54279224 | None:intergenic | 35.0% | |
| ATGTTGTTGGATGTGAATAG+AGG | - | chr4_2:54279277-54279296 | Msa0607470:intron | 35.0% | |
| TGTTGTTGGATGTGAATAGA+GGG | - | chr4_2:54279278-54279297 | Msa0607470:intron | 35.0% | |
| !!! | TTCTTTTAGAATTGCGGTTG+AGG | - | chr4_2:54279336-54279355 | Msa0607470:intron | 35.0% |
| !!! | TCTTTTAGAATTGCGGTTGA+GGG | - | chr4_2:54279337-54279356 | Msa0607470:intron | 35.0% |
| ! | GTGTTTTCTAATACCTGCTA+AGG | + | chr4_2:54279545-54279564 | None:intergenic | 35.0% |
| TAGCAGGTATTAGAAAACAC+TGG | - | chr4_2:54279545-54279564 | Msa0607470:intron | 35.0% | |
| AGCAGGTATTAGAAAACACT+GGG | - | chr4_2:54279546-54279565 | Msa0607470:intron | 35.0% | |
| ATAAACCTGTAGTTGCAGTT+GGG | - | chr4_2:54279677-54279696 | Msa0607470:intron | 35.0% | |
| ATGAAACCCGATGTATTAGA+AGG | + | chr4_2:54279850-54279869 | None:intergenic | 35.0% | |
| TAATACATCGGGTTTCATGA+AGG | - | chr4_2:54279852-54279871 | Msa0607470:intron | 35.0% | |
| !! | AGTAACGGCTCTAATCTTTT+CGG | + | chr4_2:54279890-54279909 | None:intergenic | 35.0% |
| GTATATAACACCGTGAGTAA+CGG | + | chr4_2:54279905-54279924 | None:intergenic | 35.0% | |
| AAACAAGTGTTTCAGCTATG+AGG | - | chr4_2:54279935-54279954 | Msa0607470:intron | 35.0% | |
| AACAAGTGTTTCAGCTATGA+GGG | - | chr4_2:54279936-54279955 | Msa0607470:intron | 35.0% | |
| !! | GATTGCTTTTGTATGGTGAT+GGG | - | chr4_2:54280052-54280071 | Msa0607470:intron | 35.0% |
| TTGCCTTGGGCTAAATTTGA+AGG | - | chr4_2:54275104-54275123 | Msa0607470:CDS | 40.0% | |
| GCTAAATTTGAAGGCAGCAT+AGG | - | chr4_2:54275113-54275132 | Msa0607470:CDS | 40.0% | |
| CCCATCACCATAAAAAAGCA+AGG | + | chr4_2:54275150-54275169 | None:intergenic | 40.0% | |
| !!! | TTTTTATGGTGATGGGATCG+AGG | - | chr4_2:54275154-54275173 | Msa0607470:CDS | 40.0% |
| AACCTGATTGGTAAGAGTTC+AGG | - | chr4_2:54275394-54275413 | Msa0607470:CDS | 40.0% | |
| TTCCTGAACTCTTACCAATC+AGG | + | chr4_2:54275399-54275418 | None:intergenic | 40.0% | |
| TAGCACAATGGTTAGGAAGA+GGG | + | chr4_2:54275551-54275570 | None:intergenic | 40.0% | |
| ATAGCACAATGGTTAGGAAG+AGG | + | chr4_2:54275552-54275571 | None:intergenic | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | + | chr4_2:54276156-54276175 | None:intergenic | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | - | chr4_2:54276156-54276175 | Msa0607470:CDS | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | - | chr4_2:54276157-54276176 | Msa0607470:CDS | 40.0% | |
| AATTGGGAGGAATTCAAGCT+TGG | + | chr4_2:54276591-54276610 | None:intergenic | 40.0% | |
| ! | ATAAAGGGAGTGTAATTGGG+AGG | + | chr4_2:54276604-54276623 | None:intergenic | 40.0% |
| !! | GGTGTCACTCTTGTACATTT+CGG | - | chr4_2:54276635-54276654 | Msa0607470:CDS | 40.0% |
| CCCAAGTTGCAAAAAGGAAT+AGG | + | chr4_2:54276725-54276744 | None:intergenic | 40.0% | |
| !! | GTCACATGTGCAATTTGTTG+AGG | - | chr4_2:54277400-54277419 | Msa0607470:intron | 40.0% |
| !! | TGGTGCTATAAATACGAGCT+TGG | - | chr4_2:54277605-54277624 | Msa0607470:intron | 40.0% |
| ! | GGTGCTATAAATACGAGCTT+GGG | - | chr4_2:54277606-54277625 | Msa0607470:intron | 40.0% |
| GGTGGTATCATCATTCATTG+CGG | - | chr4_2:54278202-54278221 | Msa0607470:intron | 40.0% | |
| CGAAAAGAGGAAGATGATGA+TGG | + | chr4_2:54278330-54278349 | None:intergenic | 40.0% | |
| ACAATTCCTCCTCTCAACAA+TGG | - | chr4_2:54278352-54278371 | Msa0607470:intron | 40.0% | |
| CAATGGCGATTACGTTTCTA+TGG | - | chr4_2:54278369-54278388 | Msa0607470:intron | 40.0% | |
| TTGGGTTTGAATGTGGAGAA+TGG | + | chr4_2:54278413-54278432 | None:intergenic | 40.0% | |
| GAGTTGTTGAGAGGATTTGA+GGG | + | chr4_2:54278441-54278460 | None:intergenic | 40.0% | |
| TTTGGAAACGAGTTGTTGAG+AGG | + | chr4_2:54278450-54278469 | None:intergenic | 40.0% | |
| TTGGTTAGGGATGTTGAGTT+TGG | + | chr4_2:54278468-54278487 | None:intergenic | 40.0% | |
| !! | CGAACTGTTTGGTTTGGTTA+GGG | + | chr4_2:54278481-54278500 | None:intergenic | 40.0% |
| !! | ACGAACTGTTTGGTTTGGTT+AGG | + | chr4_2:54278482-54278501 | None:intergenic | 40.0% |
| CGAAAACGAACTGTTTGGTT+TGG | + | chr4_2:54278487-54278506 | None:intergenic | 40.0% | |
| GATTGAACAATAACAGCACC+AGG | + | chr4_2:54278614-54278633 | None:intergenic | 40.0% | |
| !! | GGTGCTGTTATTGTTCAATC+TGG | - | chr4_2:54278614-54278633 | Msa0607470:intron | 40.0% |
| GCTGTTATTGTTCAATCTGG+TGG | - | chr4_2:54278617-54278636 | Msa0607470:intron | 40.0% | |
| ATTCTTGTTCAATCGCCGTT+AGG | - | chr4_2:54278854-54278873 | Msa0607470:intron | 40.0% | |
| TTCTTGTTCAATCGCCGTTA+GGG | - | chr4_2:54278855-54278874 | Msa0607470:intron | 40.0% | |
| CCGAAACATGAATTCCCTAA+CGG | + | chr4_2:54278872-54278891 | None:intergenic | 40.0% | |
| CCGTTAGGGAATTCATGTTT+CGG | - | chr4_2:54278869-54278888 | Msa0607470:intron | 40.0% | |
| !! | TTGCTTCGATTGGTTTGAAG+AGG | - | chr4_2:54279011-54279030 | Msa0607470:intron | 40.0% |
| ! | TAAATCGACTTCGCAAATGC+AGG | + | chr4_2:54279181-54279200 | None:intergenic | 40.0% |
| ! | GTCGATTTATCCATTGCTTG+AGG | - | chr4_2:54279192-54279211 | Msa0607470:intron | 40.0% |
| TTTCTGATTTACCGTCGATG+AGG | - | chr4_2:54279230-54279249 | Msa0607470:intron | 40.0% | |
| TCATGTGCAGAAGATGTTGT+TGG | - | chr4_2:54279264-54279283 | Msa0607470:intron | 40.0% | |
| GTTGTTGGATGTGAATAGAG+GGG | - | chr4_2:54279279-54279298 | Msa0607470:intron | 40.0% | |
| !! | TGATGCTAGAACTGTTTCTG+AGG | - | chr4_2:54279309-54279328 | Msa0607470:intron | 40.0% |
| !!! | CTTTTAGAATTGCGGTTGAG+GGG | - | chr4_2:54279338-54279357 | Msa0607470:intron | 40.0% |
| ATGCAGTCGATTGTTGAGAA+AGG | - | chr4_2:54279388-54279407 | Msa0607470:intron | 40.0% | |
| !! | TGTTGAGAAAGGTGTTTCCA+AGG | - | chr4_2:54279399-54279418 | Msa0607470:intron | 40.0% |
| ATTACGGATTCTGACGGTAA+AGG | - | chr4_2:54279613-54279632 | Msa0607470:intron | 40.0% | |
| TTACGGATTCTGACGGTAAA+GGG | - | chr4_2:54279614-54279633 | Msa0607470:intron | 40.0% | |
| TAAATCATGGTGACAGGAAG+CGG | - | chr4_2:54279644-54279663 | Msa0607470:intron | 40.0% | |
| GATAAACCTGTAGTTGCAGT+TGG | - | chr4_2:54279676-54279695 | Msa0607470:intron | 40.0% | |
| TAAACCTGTAGTTGCAGTTG+GGG | - | chr4_2:54279678-54279697 | Msa0607470:intron | 40.0% | |
| !! | AAAGTACTGAGTGTTTCCCT+AGG | - | chr4_2:54279823-54279842 | Msa0607470:intron | 40.0% |
| CGATGTATTAGAAGGACCTA+GGG | + | chr4_2:54279842-54279861 | None:intergenic | 40.0% | |
| CCTAGGTCCTTCTAATACAT+CGG | - | chr4_2:54279840-54279859 | Msa0607470:intron | 40.0% | |
| CTAGGTCCTTCTAATACATC+GGG | - | chr4_2:54279841-54279860 | Msa0607470:intron | 40.0% | |
| AAGATTAGAGCCGTTACTCA+CGG | - | chr4_2:54279892-54279911 | Msa0607470:intron | 40.0% | |
| !! | TGCACAGGATTGCTTTTGTA+TGG | - | chr4_2:54280045-54280064 | Msa0607470:intron | 40.0% |
| !! | GGATTGCTTTTGTATGGTGA+TGG | - | chr4_2:54280051-54280070 | Msa0607470:intron | 40.0% |
| !! | AAATTTACGAGAAGCGTCTC+AGG | - | chr4_2:54280140-54280159 | Msa0607470:CDS | 40.0% |
| !!! | AGCATTTTGGCTTCTTGCCT+TGG | - | chr4_2:54275090-54275109 | Msa0607470:CDS | 45.0% |
| !!! | GCATTTTGGCTTCTTGCCTT+GGG | - | chr4_2:54275091-54275110 | Msa0607470:CDS | 45.0% |
| CTGCCTTCAAATTTAGCCCA+AGG | + | chr4_2:54275110-54275129 | None:intergenic | 45.0% | |
| TCTACGTGAATCATCTCAGG+CGG | - | chr4_2:54275238-54275257 | Msa0607470:CDS | 45.0% | |
| CGTCTGTATGAATGTGAGTC+TGG | - | chr4_2:54276239-54276258 | Msa0607470:CDS | 45.0% | |
| GTATGAATGTGAGTCTGGCA+TGG | - | chr4_2:54276244-54276263 | Msa0607470:CDS | 45.0% | |
| TGGCATGGTAGTTGTGTATC+TGG | - | chr4_2:54276259-54276278 | Msa0607470:CDS | 45.0% | |
| !! | CTTCTGAAACAGCCTTCTCT+TGG | - | chr4_2:54276467-54276486 | Msa0607470:CDS | 45.0% |
| TGAAACAGCCTTCTCTTGGA+AGG | - | chr4_2:54276471-54276490 | Msa0607470:CDS | 45.0% | |
| TTACAGTGCCTTCCAAGAGA+AGG | + | chr4_2:54276482-54276501 | None:intergenic | 45.0% | |
| TCTGTCTTGACTATGCACTC+TGG | + | chr4_2:54277024-54277043 | None:intergenic | 45.0% | |
| AATAGGCACCCCATGTTAAG+TGG | + | chr4_2:54277211-54277230 | None:intergenic | 45.0% | |
| TAGGGAGTGGTAGTAGTACT+AGG | - | chr4_2:54278249-54278268 | Msa0607470:intron | 45.0% | |
| GGAGGAATTGTTGCGAAAAG+AGG | + | chr4_2:54278343-54278362 | None:intergenic | 45.0% | |
| TAATCGCCATTGTTGAGAGG+AGG | + | chr4_2:54278361-54278380 | None:intergenic | 45.0% | |
| ACGTAATCGCCATTGTTGAG+AGG | + | chr4_2:54278364-54278383 | None:intergenic | 45.0% | |
| ! | TGGAGAATGGCCATAGGTTT+TGG | + | chr4_2:54278400-54278419 | None:intergenic | 45.0% |
| TGAATGTGGAGAATGGCCAT+AGG | + | chr4_2:54278406-54278425 | None:intergenic | 45.0% | |
| GGAGTTGTTGGGTTTGAATG+TGG | + | chr4_2:54278420-54278439 | None:intergenic | 45.0% | |
| GAGGATTTGAGGGAGTTGTT+GGG | + | chr4_2:54278431-54278450 | None:intergenic | 45.0% | |
| AGAGGATTTGAGGGAGTTGT+TGG | + | chr4_2:54278432-54278451 | None:intergenic | 45.0% | |
| CGAGTTGTTGAGAGGATTTG+AGG | + | chr4_2:54278442-54278461 | None:intergenic | 45.0% | |
| ATTGATGAGTGCGATAGCGT+CGG | + | chr4_2:54278582-54278601 | None:intergenic | 45.0% | |
| !! | TAGTGTCTCCCCTTTTGAAG+AGG | - | chr4_2:54278640-54278659 | Msa0607470:intron | 45.0% |
| TCTGGTGCAATTGTTGATGC+TGG | - | chr4_2:54278941-54278960 | Msa0607470:intron | 45.0% | |
| AAATGAGTCTGTTTCGGAGG+TGG | - | chr4_2:54279117-54279136 | Msa0607470:intron | 45.0% | |
| AATGAGTCTGTTTCGGAGGT+GGG | - | chr4_2:54279118-54279137 | Msa0607470:intron | 45.0% | |
| TGATTTACCGTCGATGAGGA+AGG | - | chr4_2:54279234-54279253 | Msa0607470:intron | 45.0% | |
| AGGTGTTTCCAAGGCAAGTA+AGG | - | chr4_2:54279408-54279427 | Msa0607470:intron | 45.0% | |
| GAACTCAACCTTACTTGCCT+TGG | + | chr4_2:54279419-54279438 | None:intergenic | 45.0% | |
| GGCAAGTAAGGTTGAGTTCT+CGG | - | chr4_2:54279420-54279439 | Msa0607470:intron | 45.0% | |
| ! | ACTTGTGACTTGTCATCCAC+CGG | + | chr4_2:54279451-54279470 | None:intergenic | 45.0% |
| TACGGATTCTGACGGTAAAG+GGG | - | chr4_2:54279615-54279634 | Msa0607470:intron | 45.0% | |
| !! | AGGAGCATCTTCTCTAACCA+AGG | - | chr4_2:54279720-54279739 | Msa0607470:intron | 45.0% |
| CCGATGTATTAGAAGGACCT+AGG | + | chr4_2:54279843-54279862 | None:intergenic | 45.0% | |
| TTGAATTCCACGACCCAAAC+TGG | + | chr4_2:54280121-54280140 | None:intergenic | 45.0% | |
| !!! | ATTTAGTATTTTTTTTTTTT+TGG | - | chr4_2:54276395-54276414 | Msa0607470:CDS | 5.0% |
| !!! | TTTAGTATTTTTTTTTTTTT+GGG | - | chr4_2:54276396-54276415 | Msa0607470:CDS | 5.0% |
| ACCCAAACTGGCAATTGAGG+GGG | + | chr4_2:54275204-54275223 | None:intergenic | 50.0% | |
| GACCCAAACTGGCAATTGAG+GGG | + | chr4_2:54275205-54275224 | None:intergenic | 50.0% | |
| CGACCCAAACTGGCAATTGA+GGG | + | chr4_2:54275206-54275225 | None:intergenic | 50.0% | |
| ACGACCCAAACTGGCAATTG+AGG | + | chr4_2:54275207-54275226 | None:intergenic | 50.0% | |
| TCAATTGCCAGTTTGGGTCG+TGG | - | chr4_2:54275206-54275225 | Msa0607470:CDS | 50.0% | |
| CAGGCGGTGATGCAAATAGA+AGG | - | chr4_2:54275254-54275273 | Msa0607470:CDS | 50.0% | |
| !! | ATCGAAGCAACTTGCTGCTG+AGG | + | chr4_2:54279001-54279020 | None:intergenic | 50.0% |
| CAGCAGCAAGTTGCTTCGAT+TGG | - | chr4_2:54279001-54279020 | Msa0607470:intron | 50.0% | |
| !! | TGTTAGGATGGTGTTGGCAG+AGG | - | chr4_2:54279051-54279070 | Msa0607470:intron | 50.0% |
| !! | GTTAGGATGGTGTTGGCAGA+GGG | - | chr4_2:54279052-54279071 | Msa0607470:intron | 50.0% |
| !! | GTCACAAGTGCTGTTTGCTC+AGG | - | chr4_2:54279462-54279481 | Msa0607470:intron | 50.0% |
| GTTGATGCTAGTGCCTTAGC+AGG | - | chr4_2:54279529-54279548 | Msa0607470:intron | 50.0% | |
| !!! | GCTGGAGCAACTGCTGTTTT+AGG | - | chr4_2:54279700-54279719 | Msa0607470:intron | 50.0% |
| TGTCGACATAGGGACTACCT+TGG | + | chr4_2:54279740-54279759 | None:intergenic | 50.0% | |
| !! | CCTTCGTCAGTGTCGACATA+GGG | + | chr4_2:54279750-54279769 | None:intergenic | 50.0% |
| !! | ACCTTCGTCAGTGTCGACAT+AGG | + | chr4_2:54279751-54279770 | None:intergenic | 50.0% |
| AAGCGAAAGATGCAGCGTGT+TGG | - | chr4_2:54279982-54280001 | Msa0607470:intron | 50.0% | |
| TTGCCTTGGGCTACATTTGC+AGG | - | chr4_2:54280009-54280028 | Msa0607470:intron | 50.0% | |
| GCTACATTTGCAGGCAGCAT+CGG | - | chr4_2:54280018-54280037 | Msa0607470:intron | 50.0% | |
| ACCCAAACTGGCAATTGAGG+GGG | + | chr4_2:54275204-54275223 | None:intergenic | 50.0% | |
| GACCCAAACTGGCAATTGAG+GGG | + | chr4_2:54275205-54275224 | None:intergenic | 50.0% | |
| CGACCCAAACTGGCAATTGA+GGG | + | chr4_2:54275206-54275225 | None:intergenic | 50.0% | |
| ACGACCCAAACTGGCAATTG+AGG | + | chr4_2:54275207-54275226 | None:intergenic | 50.0% | |
| TCAATTGCCAGTTTGGGTCG+TGG | - | chr4_2:54275206-54275225 | Msa0607470:CDS | 50.0% | |
| TCCCCCCTCAATTGCCAGTT+TGG | - | chr4_2:54275199-54275218 | Msa0607470:CDS | 55.0% | |
| CCCAAACTGGCAATTGAGGG+GGG | + | chr4_2:54275203-54275222 | None:intergenic | 55.0% | |
| CCCCCCTCAATTGCCAGTTT+GGG | - | chr4_2:54275200-54275219 | Msa0607470:CDS | 55.0% | |
| TTCAACGCCACGACCCAAAC+TGG | + | chr4_2:54275216-54275235 | None:intergenic | 55.0% | |
| ! | AGGAATAGGTGGCACCGAGA+CGG | + | chr4_2:54276711-54276730 | None:intergenic | 55.0% |
| ATCTCACGGCCTTCGCATTG+TGG | - | chr4_2:54276813-54276832 | Msa0607470:CDS | 55.0% | |
| TCTCACGGCCTTCGCATTGT+GGG | - | chr4_2:54276814-54276833 | Msa0607470:CDS | 55.0% | |
| CAAACACCCCCACAATGCGA+AGG | + | chr4_2:54276825-54276844 | None:intergenic | 55.0% | |
| ! | AAGGTCTAGGGTTCGAACCC+TGG | + | chr4_2:54277784-54277803 | None:intergenic | 55.0% |
| ! | AGCGTCGGAGGAAGAACGTT+CGG | + | chr4_2:54278567-54278586 | None:intergenic | 55.0% |
| ! | GTCTGTTTCGGAGGTGGGTT+CGG | - | chr4_2:54279123-54279142 | Msa0607470:intron | 55.0% |
| GGTTGAGTTCTCGGAGCTTC+CGG | - | chr4_2:54279429-54279448 | Msa0607470:intron | 55.0% | |
| TGACAGGAAGCGGTTGCTAG+CGG | - | chr4_2:54279654-54279673 | Msa0607470:intron | 55.0% | |
| CCCTATGTCGACACTGACGA+AGG | - | chr4_2:54279747-54279766 | Msa0607470:intron | 55.0% | |
| !! | AGCGTGTTGGCTTCTTGCCT+TGG | - | chr4_2:54279995-54280014 | Msa0607470:intron | 55.0% |
| !! | GCGTGTTGGCTTCTTGCCTT+GGG | - | chr4_2:54279996-54280015 | Msa0607470:intron | 55.0% |
| CTGCCTGCAAATGTAGCCCA+AGG | + | chr4_2:54280015-54280034 | None:intergenic | 55.0% | |
| CAAACTGGCAATTGAGGGGG+CGG | + | chr4_2:54275201-54275220 | None:intergenic | 55.0% | |
| GCCCCCTCAATTGCCAGTTT+GGG | - | chr4_2:54280105-54280124 | Msa0607470:CDS | 55.0% | |
| CAGGCAGTGATGCAGACAGA+AGG | - | chr4_2:54280159-54280178 | Msa0607470:CDS | 55.0% | |
| TGGCAATTGAGGGGGGAGCA+GGG | + | chr4_2:54275196-54275215 | None:intergenic | 60.0% | |
| ! | GTGGGGAGAGCATGGGGATT+TGG | + | chr4_2:54276687-54276706 | None:intergenic | 60.0% |
| ! | AGACGGTGTGGGGAGAGCAT+GGG | + | chr4_2:54276694-54276713 | None:intergenic | 60.0% |
| ATGCTCTCCCCACACCGTCT+CGG | - | chr4_2:54276694-54276713 | Msa0607470:CDS | 60.0% | |
| CTCACGGCCTTCGCATTGTG+GGG | - | chr4_2:54276815-54276834 | Msa0607470:CDS | 60.0% | |
| TCACGGCCTTCGCATTGTGG+GGG | - | chr4_2:54276816-54276835 | Msa0607470:intron | 60.0% | |
| CGGAGGAAGAACGTTCGGAG+AGG | + | chr4_2:54278562-54278581 | None:intergenic | 60.0% | |
| ! | GATGAGTGCGATAGCGTCGG+AGG | + | chr4_2:54278579-54278598 | None:intergenic | 60.0% |
| ! | ACCGTCGATGAGGAAGGCGT+TGG | - | chr4_2:54279240-54279259 | Msa0607470:intron | 60.0% |
| CCCAACGCCTTCCTCATCGA+CGG | + | chr4_2:54279244-54279263 | None:intergenic | 60.0% | |
| !! | CCGTCGATGAGGAAGGCGTT+GGG | - | chr4_2:54279241-54279260 | Msa0607470:intron | 60.0% |
| TGAGTTCTCGGAGCTTCCGG+TGG | - | chr4_2:54279432-54279451 | Msa0607470:intron | 60.0% | |
| CCAGCCCCAACTGCAACTAC+AGG | + | chr4_2:54279685-54279704 | None:intergenic | 60.0% | |
| CCTGTAGTTGCAGTTGGGGC+TGG | - | chr4_2:54279682-54279701 | Msa0607470:intron | 60.0% | |
| ! | GGCAGCATCGGAACTTGCAC+AGG | - | chr4_2:54280030-54280049 | Msa0607470:intron | 60.0% |
| CGCCCCCTCAATTGCCAGTT+TGG | - | chr4_2:54280104-54280123 | Msa0607470:CDS | 60.0% | |
| CTGGCAATTGAGGGGGGAGC+AGG | + | chr4_2:54275197-54275216 | None:intergenic | 65.0% | |
| ! | GACGGTGTGGGGAGAGCATG+GGG | + | chr4_2:54276693-54276712 | None:intergenic | 65.0% |
| GAGACGGTGTGGGGAGAGCA+TGG | + | chr4_2:54276695-54276714 | None:intergenic | 65.0% | |
| ! | AGGTGGCACCGAGACGGTGT+GGG | + | chr4_2:54276705-54276724 | None:intergenic | 65.0% |
| ! | TAGGTGGCACCGAGACGGTG+TGG | + | chr4_2:54276706-54276725 | None:intergenic | 65.0% |
| TGGCAATTGAGGGGGCGGCA+GGG | + | chr4_2:54280101-54280120 | None:intergenic | 65.0% | |
| ! | GGTGGCACCGAGACGGTGTG+GGG | + | chr4_2:54276704-54276723 | None:intergenic | 70.0% |
| CTGGCAATTGAGGGGGCGGC+AGG | + | chr4_2:54280102-54280121 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 54275086 | 54280245 | 54275086 | ID=Msa0607470;Name=Msa0607470 |
| chr4_2 | mRNA | 54275086 | 54280245 | 54275086 | ID=Msa0607470-mRNA-1;Parent=Msa0607470;Name=Msa0607470-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0|0.5|2|0|640 |
| chr4_2 | exon | 54280072 | 54280245 | 54280072 | ID=Msa0607470-mRNA-1:exon:13569;Parent=Msa0607470-mRNA-1 |
| chr4_2 | exon | 54275086 | 54276834 | 54275086 | ID=Msa0607470-mRNA-1:exon:13568;Parent=Msa0607470-mRNA-1 |
| chr4_2 | CDS | 54280072 | 54280245 | 54280072 | ID=Msa0607470-mRNA-1:cds;Parent=Msa0607470-mRNA-1 |
| chr4_2 | CDS | 54275086 | 54276834 | 54275086 | ID=Msa0607470-mRNA-1:cds;Parent=Msa0607470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
