Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647770 | XP_003607334.1 | 95.353 | 624 | 28 | 1 | 1 | 624 | 1 | 623 | 0.0 | 1192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647770 | G7JQM9 | 95.353 | 624 | 28 | 1 | 1 | 624 | 1 | 623 | 0.0 | 1192 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607470 | Msa0647770 | 0.875253 | 3.564989e-68 | -8.615850e-47 |
| Msa0647770 | Msa0690480 | 0.875168 | 3.812351e-68 | -8.615850e-47 |
| Msa0647770 | Msa1340020 | 0.816397 | 5.648346e-52 | -8.615850e-47 |
| Msa0145520 | Msa0647770 | 0.811191 | 7.918757e-51 | -8.615850e-47 |
| Msa0184020 | Msa0647770 | 0.812205 | 4.765519e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647770 | MtrunA17_Chr4g0039101 | 95.353 | 624 | 28 | 1 | 1 | 624 | 1 | 623 | 0.0 | 1192 |
| Msa0647770 | MtrunA17_Chr4g0039111 | 67.296 | 636 | 163 | 4 | 1 | 624 | 1 | 603 | 0.0 | 801 |
| Msa0647770 | MtrunA17_Chr4g0039091 | 80.000 | 85 | 17 | 0 | 536 | 620 | 1 | 85 | 8.64e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647770 | AT2G43250.1 | 47.678 | 646 | 287 | 9 | 1 | 620 | 2 | 622 | 0.0 | 552 |
Find 138 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGGAGAGAATGTAAATT+AGG | 0.189086 | 4_3:-53852985 | None:intergenic |
| TAGAATAGCTTTAAATAATA+AGG | 0.205721 | 4_3:+53853816 | Msa0647770:CDS |
| TTGCCTTGGGCTACATTTGC+AGG | 0.246779 | 4_3:+53854462 | Msa0647770:CDS |
| TGGAGAATGGCCAAAGGTTT+TGG | 0.254741 | 4_3:-53852850 | None:intergenic |
| CAATGGCGATTACGTTTCTA+TGG | 0.293232 | 4_3:+53852822 | None:intergenic |
| TTGGTACCTACTTCTTCTTT+TGG | 0.293805 | 4_3:+53853133 | Msa0647770:CDS |
| GTAAATTAGGGATTGGGAAT+TGG | 0.294193 | 4_3:-53852972 | None:intergenic |
| TAAATTAGGGATTGGGAATT+GGG | 0.304149 | 4_3:-53852971 | None:intergenic |
| AGCGTGTTGGCTTCTTGCCT+TGG | 0.305380 | 4_3:+53854448 | Msa0647770:CDS |
| AGAATAGCTTTAAATAATAA+GGG | 0.336252 | 4_3:+53853817 | Msa0647770:CDS |
| TTTCGATGAATAAAGATGTT+AGG | 0.339563 | 4_3:+53853488 | Msa0647770:CDS |
| CGAAAACGAATTGTTTGGTT+TGG | 0.343778 | 4_3:-53852937 | None:intergenic |
| GGTTGAGTTCTCGGAGCTTC+CGG | 0.343906 | 4_3:+53853882 | Msa0647770:CDS |
| ACAATCTCTTTAACATCATT+AGG | 0.344234 | 4_3:-53854033 | None:intergenic |
| AGAGGATTTGAGGGAGTTGT+TGG | 0.351815 | 4_3:-53852882 | None:intergenic |
| GGTAGTAGTGATAATAATTC+TGG | 0.352463 | 4_3:+53853376 | Msa0647770:CDS |
| TTACGGATTCTGACGGTAAA+GGG | 0.353035 | 4_3:+53854067 | Msa0647770:CDS |
| AGAGGAGAGAATGTAAATTA+GGG | 0.353071 | 4_3:-53852984 | None:intergenic |
| ACGAATTGTTTGGTTTGGTT+AGG | 0.353789 | 4_3:-53852932 | None:intergenic |
| TTGAATTCCACGACCCAAAC+TGG | 0.363401 | 4_3:-53854571 | None:intergenic |
| CGAATTGTTTGGTTTGGTTA+GGG | 0.363820 | 4_3:-53852931 | None:intergenic |
| TACAACTATTGTGAATAGTT+TGG | 0.365489 | 4_3:+53853426 | Msa0647770:CDS |
| TTGGTTAGGGATGTTGAGTT+TGG | 0.367560 | 4_3:-53852918 | None:intergenic |
| GTCTGTTTCGGAGGTGGGTT+CGG | 0.369465 | 4_3:+53853576 | Msa0647770:CDS |
| GGCAAGTAAGGTTGAGTTCT+CGG | 0.381718 | 4_3:+53853873 | Msa0647770:CDS |
| TTGTTTCTCTATTGATCCCT+TGG | 0.385155 | 4_3:-53854684 | None:intergenic |
| GCGTGTTGGCTTCTTGCCTT+GGG | 0.393108 | 4_3:+53854449 | Msa0647770:CDS |
| AAAAGCGAAAACGAATTGTT+TGG | 0.395361 | 4_3:-53852942 | None:intergenic |
| CCTAGGTCCTTCTAATACAT+CGG | 0.396726 | 4_3:+53854293 | Msa0647770:CDS |
| TATGGAATCTCCAAAACCTT+TGG | 0.400635 | 4_3:+53852840 | Msa0647770:CDS |
| AGTATAATCTTGAGTGAAGT+TGG | 0.406969 | 4_3:-53854240 | None:intergenic |
| AGAGAATGTAAATTAGGGAT+TGG | 0.407904 | 4_3:-53852979 | None:intergenic |
| CGAGTTGTTGAGAGGATTTG+AGG | 0.408533 | 4_3:-53852892 | None:intergenic |
| AATGATGTTAAAGAGATTGT+TGG | 0.410713 | 4_3:+53854036 | Msa0647770:CDS |
| GGTGCTGTTATTGTTCAATC+TGG | 0.411054 | 4_3:+53853067 | Msa0647770:CDS |
| CTAGGTCCTTCTAATACATC+GGG | 0.413494 | 4_3:+53854294 | Msa0647770:CDS |
| ATTCTTGTTCAATCGCCGTT+AGG | 0.414808 | 4_3:+53853307 | Msa0647770:CDS |
| AGGTGTTTCCAAGGCAAGTA+AGG | 0.421393 | 4_3:+53853861 | Msa0647770:CDS |
| GAGTTGTTGAGAGGATTTGA+GGG | 0.428852 | 4_3:-53852891 | None:intergenic |
| CAGCAGCAAGTTGCTTCGAT+TGG | 0.429335 | 4_3:+53853454 | Msa0647770:CDS |
| GAGAATGTAAATTAGGGATT+GGG | 0.433036 | 4_3:-53852978 | None:intergenic |
| GAACTCAACCTTACTTGCCT+TGG | 0.433204 | 4_3:-53853869 | None:intergenic |
| AGAGGGTTTATATAGCTATA+TGG | 0.436414 | 4_3:+53853522 | Msa0647770:CDS |
| CCGTTAGGGAATTCATGTTT+CGG | 0.440138 | 4_3:+53853322 | Msa0647770:CDS |
| ATAAACCTGTAGTTGCAGTT+GGG | 0.440694 | 4_3:+53854130 | Msa0647770:CDS |
| CCTGTAGTTGCAGTTGGGGC+TGG | 0.444774 | 4_3:+53854135 | Msa0647770:CDS |
| GAGGATTTGAGGGAGTTGTT+GGG | 0.445669 | 4_3:-53852881 | None:intergenic |
| GATTGTTGGAGATTTAATTA+CGG | 0.453221 | 4_3:+53854050 | Msa0647770:CDS |
| TGTTAGGATGGTGTTGGCAG+AGG | 0.460756 | 4_3:+53853504 | Msa0647770:CDS |
| AAACAAGTGTTTCAGCTATG+AGG | 0.463234 | 4_3:+53854388 | Msa0647770:CDS |
| AAATGAGTCTGTTTCGGAGG+TGG | 0.463927 | 4_3:+53853570 | Msa0647770:CDS |
| ATGAAACCCGATGTATTAGA+AGG | 0.464559 | 4_3:-53854300 | None:intergenic |
| TTCTTGTTCAATCGCCGTTA+GGG | 0.466273 | 4_3:+53853308 | Msa0647770:CDS |
| TATTCACAATAGTTGTAAAA+CGG | 0.466843 | 4_3:-53853420 | None:intergenic |
| ATTACGGATTCTGACGGTAA+AGG | 0.467597 | 4_3:+53854066 | Msa0647770:CDS |
| GTCACAAGTGCTGTTTGCTC+AGG | 0.471429 | 4_3:+53853915 | Msa0647770:CDS |
| AAATTTACGAGAAGCGTCTC+AGG | 0.474706 | 4_3:+53854593 | Msa0647770:CDS |
| TCAATTGCCAGTTTGGGTCG+TGG | 0.475526 | 4_3:+53854564 | Msa0647770:CDS |
| AGCGTCGGAGGAAGAACGTT+CGG | 0.478406 | 4_3:-53853017 | None:intergenic |
| ATGTTGTTGGATGTGAATAG+AGG | 0.480431 | 4_3:+53853730 | Msa0647770:CDS |
| AAAGGGGTTAGTTTAAATCA+TGG | 0.486981 | 4_3:+53854084 | Msa0647770:CDS |
| TTAGTACTACCAATCAAAAG+TGG | 0.487428 | 4_3:-53853547 | None:intergenic |
| TAAATCATGGTGACAGGAAG+CGG | 0.488492 | 4_3:+53854097 | Msa0647770:CDS |
| GATAAACCTGTAGTTGCAGT+TGG | 0.489376 | 4_3:+53854129 | Msa0647770:CDS |
| TCTGGTGCAATTGTTGATGC+TGG | 0.489937 | 4_3:+53853394 | Msa0647770:CDS |
| GATAGATATGAAACTGTTGC+TGG | 0.493066 | 4_3:+53853193 | Msa0647770:CDS |
| TTAGTTTAAATCATGGTGAC+AGG | 0.496208 | 4_3:+53854091 | Msa0647770:CDS |
| TTGGGTTTGAATGTGGAGAA+TGG | 0.498077 | 4_3:-53852863 | None:intergenic |
| CCGTCGATGAGGAAGGCGTT+GGG | 0.498233 | 4_3:+53853694 | Msa0647770:CDS |
| AATGAGTCTGTTTCGGAGGT+GGG | 0.502900 | 4_3:+53853571 | Msa0647770:CDS |
| CGACCCAAACTGGCAATTGA+GGG | 0.505588 | 4_3:-53854561 | None:intergenic |
| GTTAGGATGGTGTTGGCAGA+GGG | 0.512429 | 4_3:+53853505 | Msa0647770:CDS |
| TGATTTACCGTCGATGAGGA+AGG | 0.522186 | 4_3:+53853687 | Msa0647770:CDS |
| GGCAGCATCGGAACTTGCAC+AGG | 0.522882 | 4_3:+53854483 | Msa0647770:CDS |
| ACGACCCAAACTGGCAATTG+AGG | 0.529521 | 4_3:-53854562 | None:intergenic |
| AGCAACAATAATGATAATCA+TGG | 0.535340 | 4_3:+53853355 | Msa0647770:CDS |
| GGAGTTGTTGGGTTTGAATG+TGG | 0.539028 | 4_3:-53852870 | None:intergenic |
| TAATACATCGGGTTTCATGA+AGG | 0.539186 | 4_3:+53854305 | Msa0647770:CDS |
| GTTGATGCTAGTGCCTTAGC+AGG | 0.539931 | 4_3:+53853982 | Msa0647770:CDS |
| GTCGATTTATCCATTGCTTG+AGG | 0.541045 | 4_3:+53853645 | Msa0647770:CDS |
| CCAGCCCCAACTGCAACTAC+AGG | 0.541510 | 4_3:-53854135 | None:intergenic |
| ACCGTCGATGAGGAAGGCGT+TGG | 0.542815 | 4_3:+53853693 | Msa0647770:CDS |
| TCTTTAACATCATTAGGAAG+AGG | 0.544265 | 4_3:-53854027 | None:intergenic |
| GCTACATTTGCAGGCAGCAT+CGG | 0.544965 | 4_3:+53854471 | Msa0647770:CDS |
| AACAAGTGTTTCAGCTATGA+GGG | 0.546847 | 4_3:+53854389 | Msa0647770:CDS |
| GATGAATAAAGATGTTAGGA+TGG | 0.552168 | 4_3:+53853492 | Msa0647770:CDS |
| TAAATCGACTTCGCAAATGC+AGG | 0.553225 | 4_3:-53853631 | None:intergenic |
| CCGATGTATTAGAAGGACCT+AGG | 0.554405 | 4_3:-53854293 | None:intergenic |
| TGTTGTTGGATGTGAATAGA+GGG | 0.556728 | 4_3:+53853731 | Msa0647770:CDS |
| TGTTGAGAAAGGTGTTTCCA+AGG | 0.556731 | 4_3:+53853852 | Msa0647770:CDS |
| AGGAGCATCTTCTCTAACCA+AGG | 0.556826 | 4_3:+53854173 | Msa0647770:CDS |
| CCTTCGTCAGTGTCGACATA+GGG | 0.558095 | 4_3:-53854200 | None:intergenic |
| TAGCAGGTATTAGAAAACAC+TGG | 0.559169 | 4_3:+53853998 | Msa0647770:CDS |
| TGATGCTAGAACTGTTTCTG+AGG | 0.561439 | 4_3:+53853762 | Msa0647770:CDS |
| ATCGAAGCAACTTGCTGCTG+AGG | 0.563278 | 4_3:-53853451 | None:intergenic |
| CAGCATTCTATGAAATAATG+AGG | 0.564757 | 4_3:+53854412 | Msa0647770:CDS |
| TTGCTTCGATTGGTTTGAAG+AGG | 0.566940 | 4_3:+53853464 | Msa0647770:CDS |
| ATGCAGTCGATTGTTGAGAA+AGG | 0.567941 | 4_3:+53853841 | Msa0647770:CDS |
| TCATGTGCAGAAGATGTTGT+TGG | 0.568961 | 4_3:+53853717 | Msa0647770:CDS |
| TCATGTAAATCCTCAAGCAA+TGG | 0.571361 | 4_3:-53853655 | None:intergenic |
| ATTGATGAGTGCGATAGCGT+CGG | 0.571724 | 4_3:-53853032 | None:intergenic |
| GATTTAATTACGGATTCTGA+CGG | 0.573702 | 4_3:+53854060 | Msa0647770:CDS |
| TGATAAGTTTAAAACAATTG+TGG | 0.574714 | 4_3:+53853954 | Msa0647770:CDS |
| TAAACAGAATAACAAAGCCA+AGG | 0.575384 | 4_3:+53854667 | Msa0647770:CDS |
| CTCATCAATGAAATCAAACC+TGG | 0.577587 | 4_3:+53853046 | Msa0647770:CDS |
| TTTGGAAACGAGTTGTTGAG+AGG | 0.579295 | 4_3:-53852900 | None:intergenic |
| GCTGTTATTGTTCAATCTGG+TGG | 0.581680 | 4_3:+53853070 | Msa0647770:CDS |
| GACCCAAACTGGCAATTGAG+GGG | 0.581848 | 4_3:-53854560 | None:intergenic |
| ACCTTCGTCAGTGTCGACAT+AGG | 0.582109 | 4_3:-53854201 | None:intergenic |
| AAGATTAGAGCCGTTACTCA+CGG | 0.584256 | 4_3:+53854345 | Msa0647770:CDS |
| TGAGTTCTCGGAGCTTCCGG+TGG | 0.585469 | 4_3:+53853885 | Msa0647770:CDS |
| ATAACACCAAAAGAAGAAGT+AGG | 0.586648 | 4_3:-53853139 | None:intergenic |
| TAAACCTGTAGTTGCAGTTG+GGG | 0.587810 | 4_3:+53854131 | Msa0647770:CDS |
| GATGAGTGCGATAGCGTCGG+AGG | 0.588491 | 4_3:-53853029 | None:intergenic |
| CGATGTATTAGAAGGACCTA+GGG | 0.590121 | 4_3:-53854292 | None:intergenic |
| AAGCGAAAGATGCAGCGTGT+TGG | 0.593479 | 4_3:+53854435 | Msa0647770:CDS |
| ACTTGTGACTTGTCATCCAC+CGG | 0.593933 | 4_3:-53853901 | None:intergenic |
| GTATATAACACCGTGAGTAA+CGG | 0.594372 | 4_3:-53854355 | None:intergenic |
| GAATAGCTTTAAATAATAAG+GGG | 0.595173 | 4_3:+53853818 | Msa0647770:CDS |
| AGCAGGTATTAGAAAACACT+GGG | 0.604153 | 4_3:+53853999 | Msa0647770:CDS |
| CAGGCAGTGATGCAGACAGA+AGG | 0.606093 | 4_3:+53854612 | Msa0647770:CDS |
| CTGCCTGCAAATGTAGCCCA+AGG | 0.610402 | 4_3:-53854465 | None:intergenic |
| GATTGAACAATAACAGCACC+AGG | 0.612363 | 4_3:-53853064 | None:intergenic |
| TACGGATTCTGACGGTAAAG+GGG | 0.615997 | 4_3:+53854068 | Msa0647770:CDS |
| ACGTTCGGAGAGGTTGAGAG+AGG | 0.627606 | 4_3:-53853002 | None:intergenic |
| AAAGTACTGAGTGTTTCCCT+AGG | 0.630981 | 4_3:+53854276 | Msa0647770:CDS |
| TGAATGTGGAGAATGGCCAA+AGG | 0.633793 | 4_3:-53852856 | None:intergenic |
| AAACAGAATAACAAAGCCAA+GGG | 0.634684 | 4_3:+53854668 | Msa0647770:CDS |
| TAAAGATGTTAGGATGGTGT+TGG | 0.637908 | 4_3:+53853498 | Msa0647770:CDS |
| CCGAAACATGAATTCCCTAA+CGG | 0.639732 | 4_3:-53853322 | None:intergenic |
| ACCCAAACTGGCAATTGAGG+GGG | 0.640771 | 4_3:-53854559 | None:intergenic |
| TGACAGGAAGCGGTTGCTAG+CGG | 0.648173 | 4_3:+53854107 | Msa0647770:CDS |
| CCCTATGTCGACACTGACGA+AGG | 0.675430 | 4_3:+53854200 | Msa0647770:CDS |
| CCCAACGCCTTCCTCATCGA+CGG | 0.675584 | 4_3:-53853694 | None:intergenic |
| GTTGTTGGATGTGAATAGAG+GGG | 0.678534 | 4_3:+53853732 | Msa0647770:CDS |
| TGTCGACATAGGGACTACCT+TGG | 0.686794 | 4_3:-53854190 | None:intergenic |
| TTTCTGATTTACCGTCGATG+AGG | 0.686801 | 4_3:+53853683 | Msa0647770:CDS |
| CGGAGGAAGAACGTTCGGAG+AGG | 0.692446 | 4_3:-53853012 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGAATAGCTTTAAATAATA+AGG | + | chr4_3:53853816-53853835 | Msa0647770:CDS | 15.0% |
| !!! | AGAATAGCTTTAAATAATAA+GGG | + | chr4_3:53853817-53853836 | Msa0647770:CDS | 15.0% |
| !!! | TAGAATAGCTTTAAATAATA+AGG | + | chr4_3:53853816-53853835 | Msa0647770:CDS | 15.0% |
| !!! | AGAATAGCTTTAAATAATAA+GGG | + | chr4_3:53853817-53853836 | Msa0647770:CDS | 15.0% |
| !! | TATTCACAATAGTTGTAAAA+CGG | - | chr4_3:53853423-53853442 | None:intergenic | 20.0% |
| !!! | GAATAGCTTTAAATAATAAG+GGG | + | chr4_3:53853818-53853837 | Msa0647770:CDS | 20.0% |
| !!! | TGATAAGTTTAAAACAATTG+TGG | + | chr4_3:53853954-53853973 | Msa0647770:CDS | 20.0% |
| !! | TATTCACAATAGTTGTAAAA+CGG | - | chr4_3:53853423-53853442 | None:intergenic | 20.0% |
| !!! | GAATAGCTTTAAATAATAAG+GGG | + | chr4_3:53853818-53853837 | Msa0647770:CDS | 20.0% |
| !!! | TGATAAGTTTAAAACAATTG+TGG | + | chr4_3:53853954-53853973 | Msa0647770:CDS | 20.0% |
| !! | GGATGAAAAAGATGATATTT+TGG | + | chr4_3:53853114-53853133 | Msa0647770:CDS | 25.0% |
| !!! | CGTTGTTTTGTTGATAAAAT+TGG | + | chr4_3:53853166-53853185 | Msa0647770:CDS | 25.0% |
| !! | TTTGTTCTTAAGGAGATTTT+TGG | + | chr4_3:53853220-53853239 | Msa0647770:CDS | 25.0% |
| ! | AAAAAAGCTGCTAAATTTGT+TGG | + | chr4_3:53853274-53853293 | Msa0647770:CDS | 25.0% |
| ! | AGCAACAATAATGATAATCA+TGG | + | chr4_3:53853355-53853374 | Msa0647770:CDS | 25.0% |
| ! | TACAACTATTGTGAATAGTT+TGG | + | chr4_3:53853426-53853445 | Msa0647770:CDS | 25.0% |
| ! | TTTCGATGAATAAAGATGTT+AGG | + | chr4_3:53853488-53853507 | Msa0647770:CDS | 25.0% |
| ! | TACTAAAAATGAGTCTGTTT+CGG | + | chr4_3:53853564-53853583 | Msa0647770:CDS | 25.0% |
| !!! | GGTTTATTCTTTTAGAATTG+CGG | + | chr4_3:53853783-53853802 | Msa0647770:CDS | 25.0% |
| !!! | TTGTTTTAAACTTATCAGTC+TGG | - | chr4_3:53853951-53853970 | None:intergenic | 25.0% |
| ! | ACAATCTCTTTAACATCATT+AGG | - | chr4_3:53854036-53854055 | None:intergenic | 25.0% |
| ! | AATGATGTTAAAGAGATTGT+TGG | + | chr4_3:53854036-53854055 | Msa0647770:CDS | 25.0% |
| ! | GATTGTTGGAGATTTAATTA+CGG | + | chr4_3:53854050-53854069 | Msa0647770:CDS | 25.0% |
| !!! | CAAGAGATTCTATTGATTTT+TGG | - | chr4_3:53854647-53854666 | None:intergenic | 25.0% |
| !! | GGATGAAAAAGATGATATTT+TGG | + | chr4_3:53853114-53853133 | Msa0647770:CDS | 25.0% |
| !!! | CGTTGTTTTGTTGATAAAAT+TGG | + | chr4_3:53853166-53853185 | Msa0647770:CDS | 25.0% |
| !! | TTTGTTCTTAAGGAGATTTT+TGG | + | chr4_3:53853220-53853239 | Msa0647770:CDS | 25.0% |
| ! | AAAAAAGCTGCTAAATTTGT+TGG | + | chr4_3:53853274-53853293 | Msa0647770:CDS | 25.0% |
| ! | AGCAACAATAATGATAATCA+TGG | + | chr4_3:53853355-53853374 | Msa0647770:CDS | 25.0% |
| ! | TACAACTATTGTGAATAGTT+TGG | + | chr4_3:53853426-53853445 | Msa0647770:CDS | 25.0% |
| ! | TTTCGATGAATAAAGATGTT+AGG | + | chr4_3:53853488-53853507 | Msa0647770:CDS | 25.0% |
| ! | TACTAAAAATGAGTCTGTTT+CGG | + | chr4_3:53853564-53853583 | Msa0647770:CDS | 25.0% |
| !!! | GGTTTATTCTTTTAGAATTG+CGG | + | chr4_3:53853783-53853802 | Msa0647770:CDS | 25.0% |
| !!! | TTGTTTTAAACTTATCAGTC+TGG | - | chr4_3:53853951-53853970 | None:intergenic | 25.0% |
| ! | ACAATCTCTTTAACATCATT+AGG | - | chr4_3:53854036-53854055 | None:intergenic | 25.0% |
| ! | AATGATGTTAAAGAGATTGT+TGG | + | chr4_3:53854036-53854055 | Msa0647770:CDS | 25.0% |
| ! | GATTGTTGGAGATTTAATTA+CGG | + | chr4_3:53854050-53854069 | Msa0647770:CDS | 25.0% |
| !!! | CAAGAGATTCTATTGATTTT+TGG | - | chr4_3:53854647-53854666 | None:intergenic | 25.0% |
| AAAAGCGAAAACGAATTGTT+TGG | - | chr4_3:53852945-53852964 | None:intergenic | 30.0% | |
| TAAATTAGGGATTGGGAATT+GGG | - | chr4_3:53852974-53852993 | None:intergenic | 30.0% | |
| GAGAATGTAAATTAGGGATT+GGG | - | chr4_3:53852981-53853000 | None:intergenic | 30.0% | |
| AGAGAATGTAAATTAGGGAT+TGG | - | chr4_3:53852982-53853001 | None:intergenic | 30.0% | |
| AGAGGAGAGAATGTAAATTA+GGG | - | chr4_3:53852987-53853006 | None:intergenic | 30.0% | |
| ! | TTTTTCATCCTCTTCAAAAG+GGG | - | chr4_3:53853104-53853123 | None:intergenic | 30.0% |
| !! | CTTTTTCATCCTCTTCAAAA+GGG | - | chr4_3:53853105-53853124 | None:intergenic | 30.0% |
| !! | TCTTTTTCATCCTCTTCAAA+AGG | - | chr4_3:53853106-53853125 | None:intergenic | 30.0% |
| ATAACACCAAAAGAAGAAGT+AGG | - | chr4_3:53853142-53853161 | None:intergenic | 30.0% | |
| !!! | TTAAGGAGATTTTTGGTACT+GGG | + | chr4_3:53853227-53853246 | Msa0647770:CDS | 30.0% |
| !!! | ATTTTTGGTACTGGGTTTTA+TGG | + | chr4_3:53853235-53853254 | Msa0647770:CDS | 30.0% |
| GGTAGTAGTGATAATAATTC+TGG | + | chr4_3:53853376-53853395 | Msa0647770:CDS | 30.0% | |
| GATGAATAAAGATGTTAGGA+TGG | + | chr4_3:53853492-53853511 | Msa0647770:CDS | 30.0% | |
| AGAGGGTTTATATAGCTATA+TGG | + | chr4_3:53853522-53853541 | Msa0647770:CDS | 30.0% | |
| !! | TATATGGATCCACTTTTGAT+TGG | + | chr4_3:53853538-53853557 | Msa0647770:CDS | 30.0% |
| TTAGTACTACCAATCAAAAG+TGG | - | chr4_3:53853550-53853569 | None:intergenic | 30.0% | |
| TCTTTAACATCATTAGGAAG+AGG | - | chr4_3:53854030-53854049 | None:intergenic | 30.0% | |
| GATTTAATTACGGATTCTGA+CGG | + | chr4_3:53854060-53854079 | Msa0647770:CDS | 30.0% | |
| !! | AAAGGGGTTAGTTTAAATCA+TGG | + | chr4_3:53854084-53854103 | Msa0647770:CDS | 30.0% |
| TTAGTTTAAATCATGGTGAC+AGG | + | chr4_3:53854091-53854110 | Msa0647770:CDS | 30.0% | |
| AGTATAATCTTGAGTGAAGT+TGG | - | chr4_3:53854243-53854262 | None:intergenic | 30.0% | |
| CAGCATTCTATGAAATAATG+AGG | + | chr4_3:53854412-53854431 | Msa0647770:CDS | 30.0% | |
| TAAACAGAATAACAAAGCCA+AGG | + | chr4_3:53854667-53854686 | Msa0647770:CDS | 30.0% | |
| AAACAGAATAACAAAGCCAA+GGG | + | chr4_3:53854668-53854687 | Msa0647770:CDS | 30.0% | |
| AAAAGCGAAAACGAATTGTT+TGG | - | chr4_3:53852945-53852964 | None:intergenic | 30.0% | |
| TAAATTAGGGATTGGGAATT+GGG | - | chr4_3:53852974-53852993 | None:intergenic | 30.0% | |
| GAGAATGTAAATTAGGGATT+GGG | - | chr4_3:53852981-53853000 | None:intergenic | 30.0% | |
| AGAGAATGTAAATTAGGGAT+TGG | - | chr4_3:53852982-53853001 | None:intergenic | 30.0% | |
| AGAGGAGAGAATGTAAATTA+GGG | - | chr4_3:53852987-53853006 | None:intergenic | 30.0% | |
| ! | TTTTTCATCCTCTTCAAAAG+GGG | - | chr4_3:53853104-53853123 | None:intergenic | 30.0% |
| !! | CTTTTTCATCCTCTTCAAAA+GGG | - | chr4_3:53853105-53853124 | None:intergenic | 30.0% |
| !! | TCTTTTTCATCCTCTTCAAA+AGG | - | chr4_3:53853106-53853125 | None:intergenic | 30.0% |
| ATAACACCAAAAGAAGAAGT+AGG | - | chr4_3:53853142-53853161 | None:intergenic | 30.0% | |
| !!! | TTAAGGAGATTTTTGGTACT+GGG | + | chr4_3:53853227-53853246 | Msa0647770:CDS | 30.0% |
| !!! | ATTTTTGGTACTGGGTTTTA+TGG | + | chr4_3:53853235-53853254 | Msa0647770:CDS | 30.0% |
| GGTAGTAGTGATAATAATTC+TGG | + | chr4_3:53853376-53853395 | Msa0647770:CDS | 30.0% | |
| GATGAATAAAGATGTTAGGA+TGG | + | chr4_3:53853492-53853511 | Msa0647770:CDS | 30.0% | |
| AGAGGGTTTATATAGCTATA+TGG | + | chr4_3:53853522-53853541 | Msa0647770:CDS | 30.0% | |
| !! | TATATGGATCCACTTTTGAT+TGG | + | chr4_3:53853538-53853557 | Msa0647770:CDS | 30.0% |
| TTAGTACTACCAATCAAAAG+TGG | - | chr4_3:53853550-53853569 | None:intergenic | 30.0% | |
| TCTTTAACATCATTAGGAAG+AGG | - | chr4_3:53854030-53854049 | None:intergenic | 30.0% | |
| GATTTAATTACGGATTCTGA+CGG | + | chr4_3:53854060-53854079 | Msa0647770:CDS | 30.0% | |
| !! | AAAGGGGTTAGTTTAAATCA+TGG | + | chr4_3:53854084-53854103 | Msa0647770:CDS | 30.0% |
| TTAGTTTAAATCATGGTGAC+AGG | + | chr4_3:53854091-53854110 | Msa0647770:CDS | 30.0% | |
| AGTATAATCTTGAGTGAAGT+TGG | - | chr4_3:53854243-53854262 | None:intergenic | 30.0% | |
| CAGCATTCTATGAAATAATG+AGG | + | chr4_3:53854412-53854431 | Msa0647770:CDS | 30.0% | |
| TAAACAGAATAACAAAGCCA+AGG | + | chr4_3:53854667-53854686 | Msa0647770:CDS | 30.0% | |
| AAACAGAATAACAAAGCCAA+GGG | + | chr4_3:53854668-53854687 | Msa0647770:CDS | 30.0% | |
| TATGGAATCTCCAAAACCTT+TGG | + | chr4_3:53852840-53852859 | Msa0647770:CDS | 35.0% | |
| !! | CGAATTGTTTGGTTTGGTTA+GGG | - | chr4_3:53852934-53852953 | None:intergenic | 35.0% |
| !! | ACGAATTGTTTGGTTTGGTT+AGG | - | chr4_3:53852935-53852954 | None:intergenic | 35.0% |
| CGAAAACGAATTGTTTGGTT+TGG | - | chr4_3:53852940-53852959 | None:intergenic | 35.0% | |
| GTAAATTAGGGATTGGGAAT+TGG | - | chr4_3:53852975-53852994 | None:intergenic | 35.0% | |
| GAGAGGAGAGAATGTAAATT+AGG | - | chr4_3:53852988-53853007 | None:intergenic | 35.0% | |
| CTCATCAATGAAATCAAACC+TGG | + | chr4_3:53853046-53853065 | Msa0647770:CDS | 35.0% | |
| ! | TTGGTACCTACTTCTTCTTT+TGG | + | chr4_3:53853133-53853152 | Msa0647770:CDS | 35.0% |
| GATAGATATGAAACTGTTGC+TGG | + | chr4_3:53853193-53853212 | Msa0647770:CDS | 35.0% | |
| ! | TGCTGGTGATTTTGTTCTTA+AGG | + | chr4_3:53853210-53853229 | Msa0647770:CDS | 35.0% |
| !!! | CTTAAGGAGATTTTTGGTAC+TGG | + | chr4_3:53853226-53853245 | Msa0647770:CDS | 35.0% |
| !!! | GCTTTTTTAGCAGCTAAAAC+AGG | - | chr4_3:53853262-53853281 | None:intergenic | 35.0% |
| TAAAGATGTTAGGATGGTGT+TGG | + | chr4_3:53853498-53853517 | Msa0647770:CDS | 35.0% | |
| TAAAAATGAGTCTGTTTCGG+AGG | + | chr4_3:53853567-53853586 | Msa0647770:CDS | 35.0% | |
| ! | GGTGTATCATAACGAGTTTT+CGG | - | chr4_3:53853613-53853632 | None:intergenic | 35.0% |
| TCATGTAAATCCTCAAGCAA+TGG | - | chr4_3:53853658-53853677 | None:intergenic | 35.0% | |
| ATGTTGTTGGATGTGAATAG+AGG | + | chr4_3:53853730-53853749 | Msa0647770:CDS | 35.0% | |
| TGTTGTTGGATGTGAATAGA+GGG | + | chr4_3:53853731-53853750 | Msa0647770:CDS | 35.0% | |
| !!! | TTCTTTTAGAATTGCGGTTG+AGG | + | chr4_3:53853789-53853808 | Msa0647770:CDS | 35.0% |
| !!! | TCTTTTAGAATTGCGGTTGA+GGG | + | chr4_3:53853790-53853809 | Msa0647770:CDS | 35.0% |
| ! | GTGTTTTCTAATACCTGCTA+AGG | - | chr4_3:53853998-53854017 | None:intergenic | 35.0% |
| TAGCAGGTATTAGAAAACAC+TGG | + | chr4_3:53853998-53854017 | Msa0647770:CDS | 35.0% | |
| AGCAGGTATTAGAAAACACT+GGG | + | chr4_3:53853999-53854018 | Msa0647770:CDS | 35.0% | |
| ATAAACCTGTAGTTGCAGTT+GGG | + | chr4_3:53854130-53854149 | Msa0647770:CDS | 35.0% | |
| ATGAAACCCGATGTATTAGA+AGG | - | chr4_3:53854303-53854322 | None:intergenic | 35.0% | |
| TAATACATCGGGTTTCATGA+AGG | + | chr4_3:53854305-53854324 | Msa0647770:CDS | 35.0% | |
| !! | AGTAACGGCTCTAATCTTTT+CGG | - | chr4_3:53854343-53854362 | None:intergenic | 35.0% |
| GTATATAACACCGTGAGTAA+CGG | - | chr4_3:53854358-53854377 | None:intergenic | 35.0% | |
| AAACAAGTGTTTCAGCTATG+AGG | + | chr4_3:53854388-53854407 | Msa0647770:CDS | 35.0% | |
| AACAAGTGTTTCAGCTATGA+GGG | + | chr4_3:53854389-53854408 | Msa0647770:CDS | 35.0% | |
| !! | GATTGCTTTTGTATGGTGAT+GGG | + | chr4_3:53854505-53854524 | Msa0647770:CDS | 35.0% |
| TATGGAATCTCCAAAACCTT+TGG | + | chr4_3:53852840-53852859 | Msa0647770:CDS | 35.0% | |
| !! | CGAATTGTTTGGTTTGGTTA+GGG | - | chr4_3:53852934-53852953 | None:intergenic | 35.0% |
| !! | ACGAATTGTTTGGTTTGGTT+AGG | - | chr4_3:53852935-53852954 | None:intergenic | 35.0% |
| CGAAAACGAATTGTTTGGTT+TGG | - | chr4_3:53852940-53852959 | None:intergenic | 35.0% | |
| GTAAATTAGGGATTGGGAAT+TGG | - | chr4_3:53852975-53852994 | None:intergenic | 35.0% | |
| GAGAGGAGAGAATGTAAATT+AGG | - | chr4_3:53852988-53853007 | None:intergenic | 35.0% | |
| CTCATCAATGAAATCAAACC+TGG | + | chr4_3:53853046-53853065 | Msa0647770:CDS | 35.0% | |
| ! | TTGGTACCTACTTCTTCTTT+TGG | + | chr4_3:53853133-53853152 | Msa0647770:CDS | 35.0% |
| GATAGATATGAAACTGTTGC+TGG | + | chr4_3:53853193-53853212 | Msa0647770:CDS | 35.0% | |
| ! | TGCTGGTGATTTTGTTCTTA+AGG | + | chr4_3:53853210-53853229 | Msa0647770:CDS | 35.0% |
| !!! | CTTAAGGAGATTTTTGGTAC+TGG | + | chr4_3:53853226-53853245 | Msa0647770:CDS | 35.0% |
| !!! | GCTTTTTTAGCAGCTAAAAC+AGG | - | chr4_3:53853262-53853281 | None:intergenic | 35.0% |
| TAAAGATGTTAGGATGGTGT+TGG | + | chr4_3:53853498-53853517 | Msa0647770:CDS | 35.0% | |
| TAAAAATGAGTCTGTTTCGG+AGG | + | chr4_3:53853567-53853586 | Msa0647770:CDS | 35.0% | |
| ! | GGTGTATCATAACGAGTTTT+CGG | - | chr4_3:53853613-53853632 | None:intergenic | 35.0% |
| TCATGTAAATCCTCAAGCAA+TGG | - | chr4_3:53853658-53853677 | None:intergenic | 35.0% | |
| ATGTTGTTGGATGTGAATAG+AGG | + | chr4_3:53853730-53853749 | Msa0647770:CDS | 35.0% | |
| TGTTGTTGGATGTGAATAGA+GGG | + | chr4_3:53853731-53853750 | Msa0647770:CDS | 35.0% | |
| !!! | TTCTTTTAGAATTGCGGTTG+AGG | + | chr4_3:53853789-53853808 | Msa0647770:CDS | 35.0% |
| !!! | TCTTTTAGAATTGCGGTTGA+GGG | + | chr4_3:53853790-53853809 | Msa0647770:CDS | 35.0% |
| ! | GTGTTTTCTAATACCTGCTA+AGG | - | chr4_3:53853998-53854017 | None:intergenic | 35.0% |
| TAGCAGGTATTAGAAAACAC+TGG | + | chr4_3:53853998-53854017 | Msa0647770:CDS | 35.0% | |
| AGCAGGTATTAGAAAACACT+GGG | + | chr4_3:53853999-53854018 | Msa0647770:CDS | 35.0% | |
| ATAAACCTGTAGTTGCAGTT+GGG | + | chr4_3:53854130-53854149 | Msa0647770:CDS | 35.0% | |
| ATGAAACCCGATGTATTAGA+AGG | - | chr4_3:53854303-53854322 | None:intergenic | 35.0% | |
| TAATACATCGGGTTTCATGA+AGG | + | chr4_3:53854305-53854324 | Msa0647770:CDS | 35.0% | |
| !! | AGTAACGGCTCTAATCTTTT+CGG | - | chr4_3:53854343-53854362 | None:intergenic | 35.0% |
| GTATATAACACCGTGAGTAA+CGG | - | chr4_3:53854358-53854377 | None:intergenic | 35.0% | |
| AAACAAGTGTTTCAGCTATG+AGG | + | chr4_3:53854388-53854407 | Msa0647770:CDS | 35.0% | |
| AACAAGTGTTTCAGCTATGA+GGG | + | chr4_3:53854389-53854408 | Msa0647770:CDS | 35.0% | |
| !! | GATTGCTTTTGTATGGTGAT+GGG | + | chr4_3:53854505-53854524 | Msa0647770:CDS | 35.0% |
| TTGGGTTTGAATGTGGAGAA+TGG | - | chr4_3:53852866-53852885 | None:intergenic | 40.0% | |
| GAGTTGTTGAGAGGATTTGA+GGG | - | chr4_3:53852894-53852913 | None:intergenic | 40.0% | |
| TTTGGAAACGAGTTGTTGAG+AGG | - | chr4_3:53852903-53852922 | None:intergenic | 40.0% | |
| TTGGTTAGGGATGTTGAGTT+TGG | - | chr4_3:53852921-53852940 | None:intergenic | 40.0% | |
| GATTGAACAATAACAGCACC+AGG | - | chr4_3:53853067-53853086 | None:intergenic | 40.0% | |
| !! | GGTGCTGTTATTGTTCAATC+TGG | + | chr4_3:53853067-53853086 | Msa0647770:CDS | 40.0% |
| GCTGTTATTGTTCAATCTGG+TGG | + | chr4_3:53853070-53853089 | Msa0647770:CDS | 40.0% | |
| ATTCTTGTTCAATCGCCGTT+AGG | + | chr4_3:53853307-53853326 | Msa0647770:CDS | 40.0% | |
| TTCTTGTTCAATCGCCGTTA+GGG | + | chr4_3:53853308-53853327 | Msa0647770:CDS | 40.0% | |
| CCGAAACATGAATTCCCTAA+CGG | - | chr4_3:53853325-53853344 | None:intergenic | 40.0% | |
| CCGTTAGGGAATTCATGTTT+CGG | + | chr4_3:53853322-53853341 | Msa0647770:CDS | 40.0% | |
| !! | TTGCTTCGATTGGTTTGAAG+AGG | + | chr4_3:53853464-53853483 | Msa0647770:CDS | 40.0% |
| ! | TAAATCGACTTCGCAAATGC+AGG | - | chr4_3:53853634-53853653 | None:intergenic | 40.0% |
| ! | GTCGATTTATCCATTGCTTG+AGG | + | chr4_3:53853645-53853664 | Msa0647770:CDS | 40.0% |
| TTTCTGATTTACCGTCGATG+AGG | + | chr4_3:53853683-53853702 | Msa0647770:CDS | 40.0% | |
| TCATGTGCAGAAGATGTTGT+TGG | + | chr4_3:53853717-53853736 | Msa0647770:CDS | 40.0% | |
| GTTGTTGGATGTGAATAGAG+GGG | + | chr4_3:53853732-53853751 | Msa0647770:CDS | 40.0% | |
| !! | TGATGCTAGAACTGTTTCTG+AGG | + | chr4_3:53853762-53853781 | Msa0647770:CDS | 40.0% |
| !!! | CTTTTAGAATTGCGGTTGAG+GGG | + | chr4_3:53853791-53853810 | Msa0647770:CDS | 40.0% |
| ATGCAGTCGATTGTTGAGAA+AGG | + | chr4_3:53853841-53853860 | Msa0647770:CDS | 40.0% | |
| !! | TGTTGAGAAAGGTGTTTCCA+AGG | + | chr4_3:53853852-53853871 | Msa0647770:CDS | 40.0% |
| ATTACGGATTCTGACGGTAA+AGG | + | chr4_3:53854066-53854085 | Msa0647770:CDS | 40.0% | |
| TTACGGATTCTGACGGTAAA+GGG | + | chr4_3:53854067-53854086 | Msa0647770:CDS | 40.0% | |
| TAAATCATGGTGACAGGAAG+CGG | + | chr4_3:53854097-53854116 | Msa0647770:CDS | 40.0% | |
| GATAAACCTGTAGTTGCAGT+TGG | + | chr4_3:53854129-53854148 | Msa0647770:CDS | 40.0% | |
| TAAACCTGTAGTTGCAGTTG+GGG | + | chr4_3:53854131-53854150 | Msa0647770:CDS | 40.0% | |
| !! | AAAGTACTGAGTGTTTCCCT+AGG | + | chr4_3:53854276-53854295 | Msa0647770:CDS | 40.0% |
| CGATGTATTAGAAGGACCTA+GGG | - | chr4_3:53854295-53854314 | None:intergenic | 40.0% | |
| CCTAGGTCCTTCTAATACAT+CGG | + | chr4_3:53854293-53854312 | Msa0647770:CDS | 40.0% | |
| CTAGGTCCTTCTAATACATC+GGG | + | chr4_3:53854294-53854313 | Msa0647770:CDS | 40.0% | |
| AAGATTAGAGCCGTTACTCA+CGG | + | chr4_3:53854345-53854364 | Msa0647770:CDS | 40.0% | |
| !! | TGCACAGGATTGCTTTTGTA+TGG | + | chr4_3:53854498-53854517 | Msa0647770:CDS | 40.0% |
| !! | GGATTGCTTTTGTATGGTGA+TGG | + | chr4_3:53854504-53854523 | Msa0647770:CDS | 40.0% |
| !! | AAATTTACGAGAAGCGTCTC+AGG | + | chr4_3:53854593-53854612 | Msa0647770:CDS | 40.0% |
| TTGGGTTTGAATGTGGAGAA+TGG | - | chr4_3:53852866-53852885 | None:intergenic | 40.0% | |
| GAGTTGTTGAGAGGATTTGA+GGG | - | chr4_3:53852894-53852913 | None:intergenic | 40.0% | |
| TTTGGAAACGAGTTGTTGAG+AGG | - | chr4_3:53852903-53852922 | None:intergenic | 40.0% | |
| TTGGTTAGGGATGTTGAGTT+TGG | - | chr4_3:53852921-53852940 | None:intergenic | 40.0% | |
| GATTGAACAATAACAGCACC+AGG | - | chr4_3:53853067-53853086 | None:intergenic | 40.0% | |
| !! | GGTGCTGTTATTGTTCAATC+TGG | + | chr4_3:53853067-53853086 | Msa0647770:CDS | 40.0% |
| GCTGTTATTGTTCAATCTGG+TGG | + | chr4_3:53853070-53853089 | Msa0647770:CDS | 40.0% | |
| ATTCTTGTTCAATCGCCGTT+AGG | + | chr4_3:53853307-53853326 | Msa0647770:CDS | 40.0% | |
| TTCTTGTTCAATCGCCGTTA+GGG | + | chr4_3:53853308-53853327 | Msa0647770:CDS | 40.0% | |
| CCGAAACATGAATTCCCTAA+CGG | - | chr4_3:53853325-53853344 | None:intergenic | 40.0% | |
| CCGTTAGGGAATTCATGTTT+CGG | + | chr4_3:53853322-53853341 | Msa0647770:CDS | 40.0% | |
| !! | TTGCTTCGATTGGTTTGAAG+AGG | + | chr4_3:53853464-53853483 | Msa0647770:CDS | 40.0% |
| ! | TAAATCGACTTCGCAAATGC+AGG | - | chr4_3:53853634-53853653 | None:intergenic | 40.0% |
| ! | GTCGATTTATCCATTGCTTG+AGG | + | chr4_3:53853645-53853664 | Msa0647770:CDS | 40.0% |
| TTTCTGATTTACCGTCGATG+AGG | + | chr4_3:53853683-53853702 | Msa0647770:CDS | 40.0% | |
| TCATGTGCAGAAGATGTTGT+TGG | + | chr4_3:53853717-53853736 | Msa0647770:CDS | 40.0% | |
| GTTGTTGGATGTGAATAGAG+GGG | + | chr4_3:53853732-53853751 | Msa0647770:CDS | 40.0% | |
| !! | TGATGCTAGAACTGTTTCTG+AGG | + | chr4_3:53853762-53853781 | Msa0647770:CDS | 40.0% |
| !!! | CTTTTAGAATTGCGGTTGAG+GGG | + | chr4_3:53853791-53853810 | Msa0647770:CDS | 40.0% |
| ATGCAGTCGATTGTTGAGAA+AGG | + | chr4_3:53853841-53853860 | Msa0647770:CDS | 40.0% | |
| !! | TGTTGAGAAAGGTGTTTCCA+AGG | + | chr4_3:53853852-53853871 | Msa0647770:CDS | 40.0% |
| ATTACGGATTCTGACGGTAA+AGG | + | chr4_3:53854066-53854085 | Msa0647770:CDS | 40.0% | |
| TTACGGATTCTGACGGTAAA+GGG | + | chr4_3:53854067-53854086 | Msa0647770:CDS | 40.0% | |
| TAAATCATGGTGACAGGAAG+CGG | + | chr4_3:53854097-53854116 | Msa0647770:CDS | 40.0% | |
| GATAAACCTGTAGTTGCAGT+TGG | + | chr4_3:53854129-53854148 | Msa0647770:CDS | 40.0% | |
| TAAACCTGTAGTTGCAGTTG+GGG | + | chr4_3:53854131-53854150 | Msa0647770:CDS | 40.0% | |
| !! | AAAGTACTGAGTGTTTCCCT+AGG | + | chr4_3:53854276-53854295 | Msa0647770:CDS | 40.0% |
| CGATGTATTAGAAGGACCTA+GGG | - | chr4_3:53854295-53854314 | None:intergenic | 40.0% | |
| CCTAGGTCCTTCTAATACAT+CGG | + | chr4_3:53854293-53854312 | Msa0647770:CDS | 40.0% | |
| CTAGGTCCTTCTAATACATC+GGG | + | chr4_3:53854294-53854313 | Msa0647770:CDS | 40.0% | |
| AAGATTAGAGCCGTTACTCA+CGG | + | chr4_3:53854345-53854364 | Msa0647770:CDS | 40.0% | |
| !! | TGCACAGGATTGCTTTTGTA+TGG | + | chr4_3:53854498-53854517 | Msa0647770:CDS | 40.0% |
| !! | GGATTGCTTTTGTATGGTGA+TGG | + | chr4_3:53854504-53854523 | Msa0647770:CDS | 40.0% |
| !! | AAATTTACGAGAAGCGTCTC+AGG | + | chr4_3:53854593-53854612 | Msa0647770:CDS | 40.0% |
| ! | TGGAGAATGGCCAAAGGTTT+TGG | - | chr4_3:53852853-53852872 | None:intergenic | 45.0% |
| TGAATGTGGAGAATGGCCAA+AGG | - | chr4_3:53852859-53852878 | None:intergenic | 45.0% | |
| GGAGTTGTTGGGTTTGAATG+TGG | - | chr4_3:53852873-53852892 | None:intergenic | 45.0% | |
| GAGGATTTGAGGGAGTTGTT+GGG | - | chr4_3:53852884-53852903 | None:intergenic | 45.0% | |
| AGAGGATTTGAGGGAGTTGT+TGG | - | chr4_3:53852885-53852904 | None:intergenic | 45.0% | |
| CGAGTTGTTGAGAGGATTTG+AGG | - | chr4_3:53852895-53852914 | None:intergenic | 45.0% | |
| ATTGATGAGTGCGATAGCGT+CGG | - | chr4_3:53853035-53853054 | None:intergenic | 45.0% | |
| !! | TAGTGTCTCCCCTTTTGAAG+AGG | + | chr4_3:53853093-53853112 | Msa0647770:CDS | 45.0% |
| TCTGGTGCAATTGTTGATGC+TGG | + | chr4_3:53853394-53853413 | Msa0647770:CDS | 45.0% | |
| AAATGAGTCTGTTTCGGAGG+TGG | + | chr4_3:53853570-53853589 | Msa0647770:CDS | 45.0% | |
| AATGAGTCTGTTTCGGAGGT+GGG | + | chr4_3:53853571-53853590 | Msa0647770:CDS | 45.0% | |
| TGATTTACCGTCGATGAGGA+AGG | + | chr4_3:53853687-53853706 | Msa0647770:CDS | 45.0% | |
| AGGTGTTTCCAAGGCAAGTA+AGG | + | chr4_3:53853861-53853880 | Msa0647770:CDS | 45.0% | |
| GAACTCAACCTTACTTGCCT+TGG | - | chr4_3:53853872-53853891 | None:intergenic | 45.0% | |
| GGCAAGTAAGGTTGAGTTCT+CGG | + | chr4_3:53853873-53853892 | Msa0647770:CDS | 45.0% | |
| ! | ACTTGTGACTTGTCATCCAC+CGG | - | chr4_3:53853904-53853923 | None:intergenic | 45.0% |
| TACGGATTCTGACGGTAAAG+GGG | + | chr4_3:53854068-53854087 | Msa0647770:CDS | 45.0% | |
| !! | AGGAGCATCTTCTCTAACCA+AGG | + | chr4_3:53854173-53854192 | Msa0647770:CDS | 45.0% |
| CCGATGTATTAGAAGGACCT+AGG | - | chr4_3:53854296-53854315 | None:intergenic | 45.0% | |
| TTGAATTCCACGACCCAAAC+TGG | - | chr4_3:53854574-53854593 | None:intergenic | 45.0% | |
| ! | TGGAGAATGGCCAAAGGTTT+TGG | - | chr4_3:53852853-53852872 | None:intergenic | 45.0% |
| TGAATGTGGAGAATGGCCAA+AGG | - | chr4_3:53852859-53852878 | None:intergenic | 45.0% | |
| GGAGTTGTTGGGTTTGAATG+TGG | - | chr4_3:53852873-53852892 | None:intergenic | 45.0% | |
| GAGGATTTGAGGGAGTTGTT+GGG | - | chr4_3:53852884-53852903 | None:intergenic | 45.0% | |
| AGAGGATTTGAGGGAGTTGT+TGG | - | chr4_3:53852885-53852904 | None:intergenic | 45.0% | |
| CGAGTTGTTGAGAGGATTTG+AGG | - | chr4_3:53852895-53852914 | None:intergenic | 45.0% | |
| ATTGATGAGTGCGATAGCGT+CGG | - | chr4_3:53853035-53853054 | None:intergenic | 45.0% | |
| !! | TAGTGTCTCCCCTTTTGAAG+AGG | + | chr4_3:53853093-53853112 | Msa0647770:CDS | 45.0% |
| TCTGGTGCAATTGTTGATGC+TGG | + | chr4_3:53853394-53853413 | Msa0647770:CDS | 45.0% | |
| AAATGAGTCTGTTTCGGAGG+TGG | + | chr4_3:53853570-53853589 | Msa0647770:CDS | 45.0% | |
| AATGAGTCTGTTTCGGAGGT+GGG | + | chr4_3:53853571-53853590 | Msa0647770:CDS | 45.0% | |
| TGATTTACCGTCGATGAGGA+AGG | + | chr4_3:53853687-53853706 | Msa0647770:CDS | 45.0% | |
| AGGTGTTTCCAAGGCAAGTA+AGG | + | chr4_3:53853861-53853880 | Msa0647770:CDS | 45.0% | |
| GAACTCAACCTTACTTGCCT+TGG | - | chr4_3:53853872-53853891 | None:intergenic | 45.0% | |
| GGCAAGTAAGGTTGAGTTCT+CGG | + | chr4_3:53853873-53853892 | Msa0647770:CDS | 45.0% | |
| ! | ACTTGTGACTTGTCATCCAC+CGG | - | chr4_3:53853904-53853923 | None:intergenic | 45.0% |
| TACGGATTCTGACGGTAAAG+GGG | + | chr4_3:53854068-53854087 | Msa0647770:CDS | 45.0% | |
| !! | AGGAGCATCTTCTCTAACCA+AGG | + | chr4_3:53854173-53854192 | Msa0647770:CDS | 45.0% |
| CCGATGTATTAGAAGGACCT+AGG | - | chr4_3:53854296-53854315 | None:intergenic | 45.0% | |
| TTGAATTCCACGACCCAAAC+TGG | - | chr4_3:53854574-53854593 | None:intergenic | 45.0% | |
| !! | ATCGAAGCAACTTGCTGCTG+AGG | - | chr4_3:53853454-53853473 | None:intergenic | 50.0% |
| CAGCAGCAAGTTGCTTCGAT+TGG | + | chr4_3:53853454-53853473 | Msa0647770:CDS | 50.0% | |
| !! | TGTTAGGATGGTGTTGGCAG+AGG | + | chr4_3:53853504-53853523 | Msa0647770:CDS | 50.0% |
| !! | GTTAGGATGGTGTTGGCAGA+GGG | + | chr4_3:53853505-53853524 | Msa0647770:CDS | 50.0% |
| !! | GTCACAAGTGCTGTTTGCTC+AGG | + | chr4_3:53853915-53853934 | Msa0647770:CDS | 50.0% |
| GTTGATGCTAGTGCCTTAGC+AGG | + | chr4_3:53853982-53854001 | Msa0647770:CDS | 50.0% | |
| !!! | GCTGGAGCAACTGCTGTTTT+AGG | + | chr4_3:53854153-53854172 | Msa0647770:CDS | 50.0% |
| TGTCGACATAGGGACTACCT+TGG | - | chr4_3:53854193-53854212 | None:intergenic | 50.0% | |
| !! | CCTTCGTCAGTGTCGACATA+GGG | - | chr4_3:53854203-53854222 | None:intergenic | 50.0% |
| !! | ACCTTCGTCAGTGTCGACAT+AGG | - | chr4_3:53854204-53854223 | None:intergenic | 50.0% |
| AAGCGAAAGATGCAGCGTGT+TGG | + | chr4_3:53854435-53854454 | Msa0647770:CDS | 50.0% | |
| TTGCCTTGGGCTACATTTGC+AGG | + | chr4_3:53854462-53854481 | Msa0647770:CDS | 50.0% | |
| GCTACATTTGCAGGCAGCAT+CGG | + | chr4_3:53854471-53854490 | Msa0647770:CDS | 50.0% | |
| ACCCAAACTGGCAATTGAGG+GGG | - | chr4_3:53854562-53854581 | None:intergenic | 50.0% | |
| GACCCAAACTGGCAATTGAG+GGG | - | chr4_3:53854563-53854582 | None:intergenic | 50.0% | |
| CGACCCAAACTGGCAATTGA+GGG | - | chr4_3:53854564-53854583 | None:intergenic | 50.0% | |
| ACGACCCAAACTGGCAATTG+AGG | - | chr4_3:53854565-53854584 | None:intergenic | 50.0% | |
| TCAATTGCCAGTTTGGGTCG+TGG | + | chr4_3:53854564-53854583 | Msa0647770:CDS | 50.0% | |
| !! | ATCGAAGCAACTTGCTGCTG+AGG | - | chr4_3:53853454-53853473 | None:intergenic | 50.0% |
| CAGCAGCAAGTTGCTTCGAT+TGG | + | chr4_3:53853454-53853473 | Msa0647770:CDS | 50.0% | |
| !! | TGTTAGGATGGTGTTGGCAG+AGG | + | chr4_3:53853504-53853523 | Msa0647770:CDS | 50.0% |
| !! | GTTAGGATGGTGTTGGCAGA+GGG | + | chr4_3:53853505-53853524 | Msa0647770:CDS | 50.0% |
| !! | GTCACAAGTGCTGTTTGCTC+AGG | + | chr4_3:53853915-53853934 | Msa0647770:CDS | 50.0% |
| GTTGATGCTAGTGCCTTAGC+AGG | + | chr4_3:53853982-53854001 | Msa0647770:CDS | 50.0% | |
| !!! | GCTGGAGCAACTGCTGTTTT+AGG | + | chr4_3:53854153-53854172 | Msa0647770:CDS | 50.0% |
| TGTCGACATAGGGACTACCT+TGG | - | chr4_3:53854193-53854212 | None:intergenic | 50.0% | |
| !! | CCTTCGTCAGTGTCGACATA+GGG | - | chr4_3:53854203-53854222 | None:intergenic | 50.0% |
| !! | ACCTTCGTCAGTGTCGACAT+AGG | - | chr4_3:53854204-53854223 | None:intergenic | 50.0% |
| AAGCGAAAGATGCAGCGTGT+TGG | + | chr4_3:53854435-53854454 | Msa0647770:CDS | 50.0% | |
| TTGCCTTGGGCTACATTTGC+AGG | + | chr4_3:53854462-53854481 | Msa0647770:CDS | 50.0% | |
| GCTACATTTGCAGGCAGCAT+CGG | + | chr4_3:53854471-53854490 | Msa0647770:CDS | 50.0% | |
| ACCCAAACTGGCAATTGAGG+GGG | - | chr4_3:53854562-53854581 | None:intergenic | 50.0% | |
| GACCCAAACTGGCAATTGAG+GGG | - | chr4_3:53854563-53854582 | None:intergenic | 50.0% | |
| CGACCCAAACTGGCAATTGA+GGG | - | chr4_3:53854564-53854583 | None:intergenic | 50.0% | |
| ACGACCCAAACTGGCAATTG+AGG | - | chr4_3:53854565-53854584 | None:intergenic | 50.0% | |
| TCAATTGCCAGTTTGGGTCG+TGG | + | chr4_3:53854564-53854583 | Msa0647770:CDS | 50.0% | |
| ACGTTCGGAGAGGTTGAGAG+AGG | - | chr4_3:53853005-53853024 | None:intergenic | 55.0% | |
| ! | AGCGTCGGAGGAAGAACGTT+CGG | - | chr4_3:53853020-53853039 | None:intergenic | 55.0% |
| ! | GTCTGTTTCGGAGGTGGGTT+CGG | + | chr4_3:53853576-53853595 | Msa0647770:CDS | 55.0% |
| GGTTGAGTTCTCGGAGCTTC+CGG | + | chr4_3:53853882-53853901 | Msa0647770:CDS | 55.0% | |
| TGACAGGAAGCGGTTGCTAG+CGG | + | chr4_3:53854107-53854126 | Msa0647770:CDS | 55.0% | |
| CCCTATGTCGACACTGACGA+AGG | + | chr4_3:53854200-53854219 | Msa0647770:CDS | 55.0% | |
| !! | AGCGTGTTGGCTTCTTGCCT+TGG | + | chr4_3:53854448-53854467 | Msa0647770:CDS | 55.0% |
| !! | GCGTGTTGGCTTCTTGCCTT+GGG | + | chr4_3:53854449-53854468 | Msa0647770:CDS | 55.0% |
| CTGCCTGCAAATGTAGCCCA+AGG | - | chr4_3:53854468-53854487 | None:intergenic | 55.0% | |
| CAAACTGGCAATTGAGGGGG+CGG | - | chr4_3:53854559-53854578 | None:intergenic | 55.0% | |
| GCCCCCTCAATTGCCAGTTT+GGG | + | chr4_3:53854558-53854577 | Msa0647770:CDS | 55.0% | |
| CAGGCAGTGATGCAGACAGA+AGG | + | chr4_3:53854612-53854631 | Msa0647770:CDS | 55.0% | |
| ACGTTCGGAGAGGTTGAGAG+AGG | - | chr4_3:53853005-53853024 | None:intergenic | 55.0% | |
| ! | AGCGTCGGAGGAAGAACGTT+CGG | - | chr4_3:53853020-53853039 | None:intergenic | 55.0% |
| ! | GTCTGTTTCGGAGGTGGGTT+CGG | + | chr4_3:53853576-53853595 | Msa0647770:CDS | 55.0% |
| GGTTGAGTTCTCGGAGCTTC+CGG | + | chr4_3:53853882-53853901 | Msa0647770:CDS | 55.0% | |
| TGACAGGAAGCGGTTGCTAG+CGG | + | chr4_3:53854107-53854126 | Msa0647770:CDS | 55.0% | |
| CCCTATGTCGACACTGACGA+AGG | + | chr4_3:53854200-53854219 | Msa0647770:CDS | 55.0% | |
| !! | AGCGTGTTGGCTTCTTGCCT+TGG | + | chr4_3:53854448-53854467 | Msa0647770:CDS | 55.0% |
| !! | GCGTGTTGGCTTCTTGCCTT+GGG | + | chr4_3:53854449-53854468 | Msa0647770:CDS | 55.0% |
| CTGCCTGCAAATGTAGCCCA+AGG | - | chr4_3:53854468-53854487 | None:intergenic | 55.0% | |
| CAAACTGGCAATTGAGGGGG+CGG | - | chr4_3:53854559-53854578 | None:intergenic | 55.0% | |
| GCCCCCTCAATTGCCAGTTT+GGG | + | chr4_3:53854558-53854577 | Msa0647770:CDS | 55.0% | |
| CAGGCAGTGATGCAGACAGA+AGG | + | chr4_3:53854612-53854631 | Msa0647770:CDS | 55.0% | |
| CGGAGGAAGAACGTTCGGAG+AGG | - | chr4_3:53853015-53853034 | None:intergenic | 60.0% | |
| ! | GATGAGTGCGATAGCGTCGG+AGG | - | chr4_3:53853032-53853051 | None:intergenic | 60.0% |
| ! | ACCGTCGATGAGGAAGGCGT+TGG | + | chr4_3:53853693-53853712 | Msa0647770:CDS | 60.0% |
| CCCAACGCCTTCCTCATCGA+CGG | - | chr4_3:53853697-53853716 | None:intergenic | 60.0% | |
| !! | CCGTCGATGAGGAAGGCGTT+GGG | + | chr4_3:53853694-53853713 | Msa0647770:CDS | 60.0% |
| TGAGTTCTCGGAGCTTCCGG+TGG | + | chr4_3:53853885-53853904 | Msa0647770:CDS | 60.0% | |
| CCAGCCCCAACTGCAACTAC+AGG | - | chr4_3:53854138-53854157 | None:intergenic | 60.0% | |
| CCTGTAGTTGCAGTTGGGGC+TGG | + | chr4_3:53854135-53854154 | Msa0647770:CDS | 60.0% | |
| ! | GGCAGCATCGGAACTTGCAC+AGG | + | chr4_3:53854483-53854502 | Msa0647770:CDS | 60.0% |
| CGCCCCCTCAATTGCCAGTT+TGG | + | chr4_3:53854557-53854576 | Msa0647770:CDS | 60.0% | |
| CGGAGGAAGAACGTTCGGAG+AGG | - | chr4_3:53853015-53853034 | None:intergenic | 60.0% | |
| ! | GATGAGTGCGATAGCGTCGG+AGG | - | chr4_3:53853032-53853051 | None:intergenic | 60.0% |
| ! | ACCGTCGATGAGGAAGGCGT+TGG | + | chr4_3:53853693-53853712 | Msa0647770:CDS | 60.0% |
| CCCAACGCCTTCCTCATCGA+CGG | - | chr4_3:53853697-53853716 | None:intergenic | 60.0% | |
| !! | CCGTCGATGAGGAAGGCGTT+GGG | + | chr4_3:53853694-53853713 | Msa0647770:CDS | 60.0% |
| TGAGTTCTCGGAGCTTCCGG+TGG | + | chr4_3:53853885-53853904 | Msa0647770:CDS | 60.0% | |
| CCAGCCCCAACTGCAACTAC+AGG | - | chr4_3:53854138-53854157 | None:intergenic | 60.0% | |
| CCTGTAGTTGCAGTTGGGGC+TGG | + | chr4_3:53854135-53854154 | Msa0647770:CDS | 60.0% | |
| ! | GGCAGCATCGGAACTTGCAC+AGG | + | chr4_3:53854483-53854502 | Msa0647770:CDS | 60.0% |
| CGCCCCCTCAATTGCCAGTT+TGG | + | chr4_3:53854557-53854576 | Msa0647770:CDS | 60.0% | |
| TGGCAATTGAGGGGGCGGCA+GGG | - | chr4_3:53854554-53854573 | None:intergenic | 65.0% | |
| TGGCAATTGAGGGGGCGGCA+GGG | - | chr4_3:53854554-53854573 | None:intergenic | 65.0% | |
| CTGGCAATTGAGGGGGCGGC+AGG | - | chr4_3:53854555-53854574 | None:intergenic | 70.0% | |
| CTGGCAATTGAGGGGGCGGC+AGG | - | chr4_3:53854555-53854574 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53852824 | 53854698 | 53852824 | ID=Msa0647770;Name=Msa0647770 |
| chr4_3 | mRNA | 53852824 | 53854698 | 53852824 | ID=Msa0647770-mRNA-1;Parent=Msa0647770;Name=Msa0647770-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|624 |
| chr4_3 | exon | 53852824 | 53854698 | 53852824 | ID=Msa0647770-mRNA-1:exon:13516;Parent=Msa0647770-mRNA-1 |
| chr4_3 | CDS | 53852824 | 53854698 | 53852824 | ID=Msa0647770-mRNA-1:cds;Parent=Msa0647770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
