Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608440 | XP_013442471.1 | 95.816 | 239 | 6 | 1 | 1 | 239 | 1 | 235 | 9.67e-163 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608440 | sp|O23708|PSA2A_ARATH | 90.377 | 239 | 19 | 1 | 1 | 239 | 1 | 235 | 3.30e-156 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608440 | Msa0691450 | 0.844563 | 6.996098e-59 | -8.615850e-47 |
| Msa0554860 | Msa0608440 | 0.852572 | 4.228106e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608440 | MtrunA17_Chr0c02g0489661 | 95.816 | 239 | 6 | 1 | 1 | 239 | 1 | 235 | 8.89e-167 | 459 |
| Msa0608440 | MtrunA17_Chr2g0308541 | 38.723 | 235 | 135 | 5 | 6 | 235 | 9 | 239 | 1.34e-49 | 162 |
| Msa0608440 | MtrunA17_Chr8g0371571 | 38.528 | 231 | 133 | 4 | 4 | 232 | 2 | 225 | 2.32e-49 | 162 |
| Msa0608440 | MtrunA17_Chr7g0243311 | 35.714 | 238 | 142 | 5 | 5 | 235 | 4 | 237 | 1.10e-44 | 150 |
| Msa0608440 | MtrunA17_Chr2g0283841 | 37.229 | 231 | 136 | 4 | 4 | 232 | 2 | 225 | 3.28e-44 | 149 |
| Msa0608440 | MtrunA17_Chr8g0360781 | 37.447 | 235 | 138 | 5 | 6 | 235 | 9 | 239 | 4.96e-44 | 148 |
| Msa0608440 | MtrunA17_Chr1g0210811 | 34.483 | 232 | 143 | 3 | 4 | 232 | 6 | 231 | 2.90e-43 | 146 |
| Msa0608440 | MtrunA17_Chr5g0401801 | 39.896 | 193 | 110 | 3 | 5 | 195 | 4 | 192 | 1.72e-42 | 144 |
| Msa0608440 | MtrunA17_Chr1g0155371 | 33.624 | 229 | 143 | 4 | 1 | 226 | 1 | 223 | 5.70e-37 | 131 |
| Msa0608440 | MtrunA17_Chr6g0459741 | 34.759 | 187 | 118 | 1 | 6 | 192 | 8 | 190 | 2.01e-35 | 126 |
| Msa0608440 | MtrunA17_Chr4g0004521 | 29.864 | 221 | 132 | 6 | 20 | 226 | 7 | 218 | 5.76e-23 | 94.4 |
| Msa0608440 | MtrunA17_Chr6g0453891 | 29.016 | 193 | 121 | 6 | 32 | 218 | 136 | 318 | 4.27e-14 | 70.5 |
| Msa0608440 | MtrunA17_Chr3g0142511 | 32.692 | 104 | 67 | 2 | 126 | 226 | 30 | 133 | 2.97e-13 | 66.2 |
| Msa0608440 | MtrunA17_Chr4g0027841 | 26.160 | 237 | 159 | 8 | 9 | 238 | 91 | 318 | 1.09e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608440 | AT1G16470.1 | 90.377 | 239 | 19 | 1 | 1 | 239 | 1 | 235 | 3.36e-157 | 436 |
| Msa0608440 | AT1G16470.2 | 90.377 | 239 | 19 | 1 | 1 | 239 | 1 | 235 | 3.36e-157 | 436 |
| Msa0608440 | AT1G79210.1 | 89.540 | 239 | 21 | 1 | 1 | 239 | 1 | 235 | 5.56e-156 | 432 |
| Msa0608440 | AT1G79210.2 | 89.540 | 239 | 21 | 1 | 1 | 239 | 1 | 235 | 5.56e-156 | 432 |
| Msa0608440 | AT1G79210.3 | 89.540 | 239 | 21 | 1 | 1 | 239 | 1 | 235 | 5.56e-156 | 432 |
| Msa0608440 | AT5G66140.1 | 39.316 | 234 | 128 | 6 | 4 | 232 | 2 | 226 | 8.23e-48 | 158 |
| Msa0608440 | AT3G51260.1 | 38.889 | 234 | 129 | 6 | 4 | 232 | 2 | 226 | 1.80e-46 | 155 |
| Msa0608440 | AT3G51260.2 | 39.908 | 218 | 118 | 5 | 4 | 217 | 2 | 210 | 3.32e-46 | 154 |
| Msa0608440 | AT5G35590.1 | 36.170 | 235 | 141 | 5 | 6 | 235 | 9 | 239 | 4.08e-44 | 149 |
| Msa0608440 | AT1G53850.1 | 35.043 | 234 | 139 | 4 | 4 | 232 | 6 | 231 | 3.92e-43 | 146 |
| Msa0608440 | AT1G53850.2 | 35.043 | 234 | 139 | 4 | 4 | 232 | 6 | 231 | 3.92e-43 | 146 |
| Msa0608440 | AT3G14290.1 | 35.043 | 234 | 139 | 4 | 4 | 232 | 6 | 231 | 7.32e-43 | 145 |
| Msa0608440 | AT3G22110.1 | 34.764 | 233 | 138 | 5 | 5 | 234 | 4 | 225 | 9.10e-42 | 143 |
| Msa0608440 | AT2G05840.1 | 34.894 | 235 | 144 | 5 | 6 | 235 | 9 | 239 | 3.76e-41 | 141 |
| Msa0608440 | AT5G42790.1 | 35.808 | 229 | 138 | 4 | 1 | 226 | 1 | 223 | 5.76e-39 | 136 |
| Msa0608440 | AT1G47250.1 | 34.188 | 234 | 145 | 4 | 1 | 231 | 1 | 228 | 3.00e-37 | 132 |
| Msa0608440 | AT2G05840.2 | 33.803 | 213 | 133 | 4 | 6 | 214 | 9 | 217 | 3.40e-35 | 125 |
| Msa0608440 | AT2G27020.1 | 31.193 | 218 | 145 | 2 | 6 | 222 | 8 | 221 | 2.36e-32 | 118 |
| Msa0608440 | AT2G05840.3 | 34.615 | 182 | 113 | 3 | 6 | 185 | 9 | 186 | 7.06e-32 | 116 |
| Msa0608440 | AT2G27020.2 | 31.193 | 218 | 145 | 2 | 6 | 222 | 110 | 323 | 3.94e-31 | 117 |
| Msa0608440 | AT4G15165.1 | 26.609 | 233 | 115 | 5 | 5 | 234 | 4 | 183 | 3.91e-21 | 88.2 |
Find 90 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCCTTTGAATGTTTC+TGG | 0.107581 | 4_2:-55570257 | Msa0608440:five_prime_UTR |
| AGCTGAAATTGATGATTATT+TGG | 0.158426 | 4_2:-55564475 | Msa0608440:CDS |
| AATAAATTAGTGTTCATTAA+AGG | 0.239694 | 4_2:+55564209 | None:intergenic |
| GGAGTGTCTCTGCTTGTTGC+TGG | 0.248519 | 4_2:-55567069 | Msa0608440:CDS |
| CTTATTTATTTGCGATGAAT+TGG | 0.258291 | 4_2:-55564155 | Msa0608440:three_prime_UTR |
| GCTTTAACCGCTGTTGGTTC+TGG | 0.270331 | 4_2:-55569511 | Msa0608440:CDS |
| TTTGTTTCTCTTTCCAGTTC+AGG | 0.288932 | 4_2:-55570293 | Msa0608440:five_prime_UTR |
| GAATTGGGGATCTTAAATTA+AGG | 0.298804 | 4_2:-55564139 | Msa0608440:three_prime_UTR |
| CTGTATACAACACCTATATT+TGG | 0.326037 | 4_2:+55569281 | None:intergenic |
| ATGCAGGAATTTACTCAGTC+TGG | 0.330425 | 4_2:-55567876 | Msa0608440:CDS |
| AGGTGCAATCGGATAATAAA+AGG | 0.343590 | 4_2:+55564181 | None:intergenic |
| TTCTAGGTACACCGATGATA+TGG | 0.345310 | 4_2:-55566409 | Msa0608440:intron |
| GTTGCTGGGTTTGATGATAA+TGG | 0.347033 | 4_2:-55567054 | Msa0608440:CDS |
| GCTTCATCAACCAATATAGA+TGG | 0.347807 | 4_2:+55569427 | None:intergenic |
| AAAGAAACTCCCATCTATAT+TGG | 0.352730 | 4_2:-55569437 | Msa0608440:CDS |
| TTATTTATTTGCGATGAATT+GGG | 0.353079 | 4_2:-55564154 | Msa0608440:three_prime_UTR |
| GTCTTTGTTGTTCAGTGGCA+TGG | 0.357696 | 4_2:-55568389 | Msa0608440:intron |
| CGAACCAATACTCGGAAATC+AGG | 0.360536 | 4_2:+55568364 | None:intergenic |
| ACAAGATGCTAAGATAATTC+AGG | 0.365742 | 4_2:+55564113 | None:intergenic |
| AACATTGAAATCGGCATCAT+TGG | 0.369450 | 4_2:-55565776 | Msa0608440:CDS |
| CAAATATAGGTGTTGTATAC+AGG | 0.377485 | 4_2:-55569280 | Msa0608440:intron |
| TGCTTCGAGAGGAACTGTTT+TGG | 0.381376 | 4_2:+55570124 | None:intergenic |
| GATAGTGGTGTCCGGCCATT+TGG | 0.384275 | 4_2:-55567090 | Msa0608440:intron |
| GCTGAAATTGATGATTATTT+GGG | 0.402207 | 4_2:-55564474 | Msa0608440:CDS |
| TGACAATGAAGGAAGGGTTC+AGG | 0.403066 | 4_2:+55570156 | None:intergenic |
| ATTTCAACACCGAACGAATA+CGG | 0.405644 | 4_2:-55570336 | Msa0608440:five_prime_UTR |
| ATGAAATAAACACCAACTTC+GGG | 0.412111 | 4_2:+55564409 | None:intergenic |
| TAATGGACCACAATTATATC+AGG | 0.419454 | 4_2:-55567037 | Msa0608440:intron |
| GTGGGAGAACTCACCTGAAC+TGG | 0.422188 | 4_2:+55570280 | None:intergenic |
| TATATAATCAAATCAAATCA+TGG | 0.431364 | 4_2:-55569602 | Msa0608440:exon |
| TATGGTAATTCTGATGACTT+TGG | 0.433271 | 4_2:+55564295 | None:intergenic |
| CTCGGTATCAAAGCTGCAAA+TGG | 0.434339 | 4_2:-55569478 | Msa0608440:CDS |
| GAGTGTCTCTGCTTGTTGCT+GGG | 0.436297 | 4_2:-55567068 | Msa0608440:CDS |
| GGAAGAGGAGATGACAATGA+AGG | 0.436563 | 4_2:+55570145 | None:intergenic |
| TTGCTGTAGGTGGATCCATC+AGG | 0.438333 | 4_2:-55566715 | Msa0608440:intron |
| TCCCTGTCACTCAACTTGTA+AGG | 0.441365 | 4_2:-55567914 | Msa0608440:CDS |
| ACACCAACTTCGGGAACATA+AGG | 0.445040 | 4_2:+55564418 | None:intergenic |
| GGGTCCTGATTTCCGAGTAT+TGG | 0.446397 | 4_2:-55568368 | Msa0608440:CDS |
| CAGTTATTAACACCAAATAT+AGG | 0.451124 | 4_2:-55569293 | Msa0608440:CDS |
| TAAATAAGATAAGGTGCAAT+CGG | 0.451592 | 4_2:+55564170 | None:intergenic |
| TCTTGGAAAGCTTCTGCTAT+GGG | 0.454997 | 4_2:-55566682 | Msa0608440:CDS |
| CATCCTTATGTTCCCGAAGT+TGG | 0.459206 | 4_2:-55564421 | Msa0608440:three_prime_UTR |
| ACAAGTTGAGTGACAGGGAT+TGG | 0.462122 | 4_2:+55567918 | None:intergenic |
| CTGTTGGTTCCGTATTCGTT+CGG | 0.465066 | 4_2:+55570327 | None:intergenic |
| GGAAGTTGCTGCCGTTATGC+AGG | 0.465077 | 4_2:-55567892 | Msa0608440:CDS |
| TATGAAATAAACACCAACTT+CGG | 0.469621 | 4_2:+55564408 | None:intergenic |
| TCTTTGTTGTTCAGTGGCAT+GGG | 0.469804 | 4_2:-55568388 | Msa0608440:intron |
| TTCTTGGAAAGCTTCTGCTA+TGG | 0.473689 | 4_2:-55566683 | Msa0608440:CDS |
| TCCCTTACAAGTTGAGTGAC+AGG | 0.479106 | 4_2:+55567912 | None:intergenic |
| CATCGCAAATAAATAAGATA+AGG | 0.497739 | 4_2:+55564161 | None:intergenic |
| AGTTTAATTGAATTTCAAGA+TGG | 0.499567 | 4_2:-55564381 | Msa0608440:three_prime_UTR |
| TTTGTCCTGATAGTGGTGTC+CGG | 0.504083 | 4_2:-55567098 | Msa0608440:intron |
| AAACATTCAAAGGAAATTAG+TGG | 0.504154 | 4_2:+55570261 | None:intergenic |
| GAGCATGCTTTAACCGCTGT+TGG | 0.504625 | 4_2:-55569517 | Msa0608440:CDS |
| CTAAGACATTTCTTGAGAAG+AGG | 0.508140 | 4_2:-55566642 | Msa0608440:intron |
| GAGGAGATGACAATGAAGGA+AGG | 0.513758 | 4_2:+55570149 | None:intergenic |
| TGCAGGAATTTACTCAGTCT+GGG | 0.516768 | 4_2:-55567875 | Msa0608440:intron |
| GGTTCTGGACAAACTTCTCT+CGG | 0.526164 | 4_2:-55569496 | Msa0608440:CDS |
| ACAAAATTCGACTGTACTGT+TGG | 0.526583 | 4_2:+55570311 | None:intergenic |
| TATTTATTTGCGATGAATTG+GGG | 0.527893 | 4_2:-55564153 | Msa0608440:three_prime_UTR |
| GTTTAATTGAATTTCAAGAT+GGG | 0.536767 | 4_2:-55564380 | Msa0608440:three_prime_UTR |
| AAATAATCATCAATTTCAGC+TGG | 0.537679 | 4_2:+55564477 | None:intergenic |
| AACAAGTATACAAACATGAG+TGG | 0.539734 | 4_2:+55570372 | None:intergenic |
| CCCTGTCACTCAACTTGTAA+GGG | 0.541679 | 4_2:-55567913 | Msa0608440:CDS |
| CTGAGTAAATTCCTGCATAA+CGG | 0.544918 | 4_2:+55567881 | None:intergenic |
| CCCTTACAAGTTGAGTGACA+GGG | 0.551681 | 4_2:+55567913 | None:intergenic |
| CTTCATCAACCAATATAGAT+GGG | 0.557361 | 4_2:+55569428 | None:intergenic |
| AACATTCAAAGGAAATTAGT+GGG | 0.561627 | 4_2:+55570262 | None:intergenic |
| TTAAATGTATGATATGTGAA+TGG | 0.573767 | 4_2:-55564232 | Msa0608440:intron |
| ACAAGCAGAGACACTCCAAA+TGG | 0.574302 | 4_2:+55567075 | None:intergenic |
| ATATAATCAAATCAAATCAT+GGG | 0.575451 | 4_2:-55569601 | Msa0608440:exon |
| GCAATATTGACACTCAAGGA+AGG | 0.576853 | 4_2:-55566363 | Msa0608440:CDS |
| GCAGAGACACTCCAAATGGC+CGG | 0.585825 | 4_2:+55567079 | None:intergenic |
| TTTGTGTCAAAGCAATACCT+GGG | 0.591200 | 4_2:-55570427 | None:intergenic |
| TGCCATACCTGATATAATTG+TGG | 0.592498 | 4_2:+55567030 | None:intergenic |
| CAACTTCGGGAACATAAGGA+TGG | 0.599592 | 4_2:+55564422 | None:intergenic |
| GGTGTTGAAATAGAAAGTGT+AGG | 0.599628 | 4_2:+55570348 | None:intergenic |
| ATCATCAAGCTCCATATCAT+CGG | 0.601420 | 4_2:+55566398 | None:intergenic |
| TGTTTCAAAATTGCTTCGAG+AGG | 0.603777 | 4_2:+55570113 | None:intergenic |
| ATTTGAACAAGCTTGCCAGA+AGG | 0.604598 | 4_2:+55569541 | None:intergenic |
| CACAGCAATATTGACACTCA+AGG | 0.611442 | 4_2:-55566367 | Msa0608440:CDS |
| ATGAAGACTTGTGATGGCAC+TGG | 0.611959 | 4_2:-55564350 | Msa0608440:three_prime_UTR |
| AGGAGATGACAATGAAGGAA+GGG | 0.616055 | 4_2:+55570150 | None:intergenic |
| ACAAGTATACAAACATGAGT+GGG | 0.620557 | 4_2:+55570373 | None:intergenic |
| CAATATTGACACTCAAGGAA+GGG | 0.636489 | 4_2:-55566362 | Msa0608440:intron |
| TGATCAATGAAGACTTGTGA+TGG | 0.639717 | 4_2:-55564356 | Msa0608440:three_prime_UTR |
| CTTGGAAAGCTTCTGCTATG+GGG | 0.641428 | 4_2:-55566681 | Msa0608440:CDS |
| GTGTAACCAGAAACATTCAA+AGG | 0.655198 | 4_2:+55570251 | None:intergenic |
| TGAGTGTCAATATTGCTGTG+TGG | 0.689041 | 4_2:+55566370 | None:intergenic |
| AGTTTGTCCAGAACCAACAG+CGG | 0.695714 | 4_2:+55569504 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAAAAAAAAAAAAAA+AGG | + | chr4_2:55566927-55566946 | None:intergenic | 0.0% |
| !!! | TTAATTTTATTTTTTGTGTA+TGG | - | chr4_2:55564583-55564602 | Msa0608440:intron | 10.0% |
| !!! | TAATTTTATTTTTTGTGTAT+GGG | - | chr4_2:55564584-55564603 | Msa0608440:intron | 10.0% |
| !!! | CTAAAATTTTATGTTAATTT+GGG | - | chr4_2:55564790-55564809 | Msa0608440:intron | 10.0% |
| !!! | TATGCAATATATATTTTTAA+TGG | - | chr4_2:55569761-55569780 | Msa0608440:intron | 10.0% |
| !!! | TTTTATTTATGCTTTCAATT+TGG | - | chr4_2:55564520-55564539 | Msa0608440:intron | 15.0% |
| !! | TTGAGAAAATTTATATGAAA+AGG | - | chr4_2:55564749-55564768 | Msa0608440:intron | 15.0% |
| !! | TGAGAAAATTTATATGAAAA+GGG | - | chr4_2:55564750-55564769 | Msa0608440:intron | 15.0% |
| !!! | GCTAAAATTTTATGTTAATT+TGG | - | chr4_2:55564789-55564808 | Msa0608440:intron | 15.0% |
| !!! | TTTTATTTTTTTTCTTGACT+AGG | - | chr4_2:55564861-55564880 | Msa0608440:intron | 15.0% |
| !!! | TTTATTTTTTTTCTTGACTA+GGG | - | chr4_2:55564862-55564881 | Msa0608440:intron | 15.0% |
| !!! | GTTTTTTATTGTGATTTTAT+AGG | - | chr4_2:55564914-55564933 | Msa0608440:intron | 15.0% |
| !! | TATATAATCAAATCAAATCA+TGG | - | chr4_2:55564937-55564956 | Msa0608440:intron | 15.0% |
| !! | ATATAATCAAATCAAATCAT+GGG | - | chr4_2:55564938-55564957 | Msa0608440:intron | 15.0% |
| !! | CTTATTAAAGAATTAATAGA+AGG | - | chr4_2:55565715-55565734 | Msa0608440:intron | 15.0% |
| !! | AAGTAATTTATAAATGTACT+TGG | - | chr4_2:55565809-55565828 | Msa0608440:intron | 15.0% |
| !! | TATATTGTTTAAATGTTACT+TGG | - | chr4_2:55566311-55566330 | Msa0608440:intron | 15.0% |
| !! | TAAAATTGAAAAGTTAATGA+AGG | + | chr4_2:55567412-55567431 | None:intergenic | 15.0% |
| !!! | GAAATATGATATTTTCATTA+AGG | + | chr4_2:55568239-55568258 | None:intergenic | 15.0% |
| !!! | TCCCTTTTATTTTATTTTTT+CGG | - | chr4_2:55568705-55568724 | Msa0608440:intron | 15.0% |
| !! | ACCGAAAAAATAAAATAAAA+GGG | + | chr4_2:55568709-55568728 | None:intergenic | 15.0% |
| !! | AAATAAATAAACACTGAAAA+GGG | + | chr4_2:55568866-55568885 | None:intergenic | 15.0% |
| !!! | TAATTTGTTAATTATATTGC+AGG | - | chr4_2:55570030-55570049 | Msa0608440:intron | 15.0% |
| !!! | AATTTGTTAATTATATTGCA+GGG | - | chr4_2:55570031-55570050 | Msa0608440:intron | 15.0% |
| !! | AATAAATTAGTGTTCATTAA+AGG | + | chr4_2:55570333-55570352 | None:intergenic | 15.0% |
| !!! | GGGAATTAAGTTTTATTTAA+GGG | + | chr4_2:55564332-55564351 | None:intergenic | 20.0% |
| !!! | TGGGAATTAAGTTTTATTTA+AGG | + | chr4_2:55564333-55564352 | None:intergenic | 20.0% |
| !! | TAAGTTCAAACATATTTGTA+TGG | - | chr4_2:55565306-55565325 | Msa0608440:intron | 20.0% |
| !! | TGATACTTGAAAACAATTTA+AGG | + | chr4_2:55566109-55566128 | None:intergenic | 20.0% |
| !! | AAGAATTTCGCAATATAAAA+TGG | + | chr4_2:55566252-55566271 | None:intergenic | 20.0% |
| !!! | CATCTTTTGTTAAAAATAAC+AGG | - | chr4_2:55566565-55566584 | Msa0608440:intron | 20.0% |
| !! | AAAAAAAAAAAAAAGGACAC+AGG | + | chr4_2:55566920-55566939 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGTGAAGACAAT+AGG | + | chr4_2:55567024-55567043 | None:intergenic | 20.0% |
| !! | TAGCTAAATTAAATGTTTAG+TGG | - | chr4_2:55567093-55567112 | Msa0608440:intron | 20.0% |
| !!! | TTGCACTTAGAATTTTTTAA+AGG | - | chr4_2:55567741-55567760 | Msa0608440:intron | 20.0% |
| !!! | ATTAATGATGACAATGTTTT+AGG | - | chr4_2:55567931-55567950 | Msa0608440:CDS | 20.0% |
| !!! | CAATTTAAAACACTGAATTA+AGG | + | chr4_2:55568370-55568389 | None:intergenic | 20.0% |
| !!! | CTTAATTCAGTGTTTTAAAT+TGG | - | chr4_2:55568368-55568387 | Msa0608440:CDS | 20.0% |
| !! | CACCGAAAAAATAAAATAAA+AGG | + | chr4_2:55568710-55568729 | None:intergenic | 20.0% |
| !! | CAAATAAATAAACACTGAAA+AGG | + | chr4_2:55568867-55568886 | None:intergenic | 20.0% |
| !!! | CAAACTTATTTATAGCTTTT+AGG | + | chr4_2:55568965-55568984 | None:intergenic | 20.0% |
| !! | AAAAGCTATAAATAAGTTTG+AGG | - | chr4_2:55568965-55568984 | Msa0608440:intron | 20.0% |
| !!! | GCAATATATATTTTTAATGG+AGG | - | chr4_2:55569764-55569783 | Msa0608440:intron | 20.0% |
| !!! | TTTCTTTTCTTAATTTTTGC+TGG | - | chr4_2:55569936-55569955 | Msa0608440:intron | 20.0% |
| !! | AGTTTAATTGAATTTCAAGA+TGG | - | chr4_2:55570158-55570177 | Msa0608440:five_prime_UTR | 20.0% |
| !! | GTTTAATTGAATTTCAAGAT+GGG | - | chr4_2:55570159-55570178 | Msa0608440:five_prime_UTR | 20.0% |
| !! | TTAAATGTATGATATGTGAA+TGG | - | chr4_2:55570307-55570326 | Msa0608440:five_prime_UTR | 20.0% |
| !! | TTATTTATTTGCGATGAATT+GGG | - | chr4_2:55570385-55570404 | Msa0608440:five_prime_UTR | 20.0% |
| ! | AACATTCAAAGGAAATTAGT+GGG | + | chr4_2:55564280-55564299 | None:intergenic | 25.0% |
| ! | AAACATTCAAAGGAAATTAG+TGG | + | chr4_2:55564281-55564300 | None:intergenic | 25.0% |
| ! | TAATTTCCTTTGAATGTTTC+TGG | - | chr4_2:55564282-55564301 | Msa0608440:three_prime_UTR | 25.0% |
| !! | AGAACGATTGCAAAAATTTT+GGG | + | chr4_2:55564361-55564380 | None:intergenic | 25.0% |
| !! | AAAACACAATTTTCTAACCT+TGG | + | chr4_2:55564453-55564472 | None:intergenic | 25.0% |
| !! | GATTACATTTCTCTTTTGAA+AGG | - | chr4_2:55564651-55564670 | Msa0608440:intron | 25.0% |
| !! | TACCATCAATTTAGAGTTTA+TGG | - | chr4_2:55564702-55564721 | Msa0608440:intron | 25.0% |
| !! | ACCATCAATTTAGAGTTTAT+GGG | - | chr4_2:55564703-55564722 | Msa0608440:intron | 25.0% |
| !!! | TCTTTTTCAAAATGTGAACT+TGG | + | chr4_2:55564835-55564854 | None:intergenic | 25.0% |
| ! | TCAAAATCTTGAGAAATTGA+TGG | + | chr4_2:55565164-55565183 | None:intergenic | 25.0% |
| !! | GTGTTAATAACTGAATTTTC+TGG | + | chr4_2:55565239-55565258 | None:intergenic | 25.0% |
| ! | CAGTTATTAACACCAAATAT+AGG | - | chr4_2:55565246-55565265 | Msa0608440:intron | 25.0% |
| ! | ACAGTTATGATGTTATCATA+GGG | + | chr4_2:55565590-55565609 | None:intergenic | 25.0% |
| ! | AACAGTTATGATGTTATCAT+AGG | + | chr4_2:55565591-55565610 | None:intergenic | 25.0% |
| ! | ACACATAATTATGTATAGAG+TGG | - | chr4_2:55565669-55565688 | Msa0608440:intron | 25.0% |
| !!! | GCAAAACAATCTTCTTTTTT+GGG | + | chr4_2:55565996-55566015 | None:intergenic | 25.0% |
| !!! | AGCAAAACAATCTTCTTTTT+TGG | + | chr4_2:55565997-55566016 | None:intergenic | 25.0% |
| ! | AATATTTGGTCAATATGACT+CGG | - | chr4_2:55566287-55566306 | Msa0608440:intron | 25.0% |
| ! | AGAGAAAAAAAAATGCTCTA+AGG | + | chr4_2:55566494-55566513 | None:intergenic | 25.0% |
| ! | ATACCAAATGATAACAGAAA+AGG | + | chr4_2:55566536-55566555 | None:intergenic | 25.0% |
| ! | TATTGTAAGCAAAAAATTGC+TGG | - | chr4_2:55566596-55566615 | Msa0608440:intron | 25.0% |
| ! | ACATATATGGTAAAGTTCAA+CGG | + | chr4_2:55566767-55566786 | None:intergenic | 25.0% |
| ! | ATAAGCTATGAGTACATATA+TGG | + | chr4_2:55566780-55566799 | None:intergenic | 25.0% |
| ! | ATTTACCAAAAACTCAAAGT+TGG | + | chr4_2:55566880-55566899 | None:intergenic | 25.0% |
| !!! | TGTTGAATCTTTTTTAGTGA+GGG | + | chr4_2:55566965-55566984 | None:intergenic | 25.0% |
| ! | TCAACATTTAATGATAATCG+GGG | + | chr4_2:55567135-55567154 | None:intergenic | 25.0% |
| ! | CTCAACATTTAATGATAATC+GGG | + | chr4_2:55567136-55567155 | None:intergenic | 25.0% |
| ! | CCTCAACATTTAATGATAAT+CGG | + | chr4_2:55567137-55567156 | None:intergenic | 25.0% |
| ! | CGATTATCATTAAATGTTGA+GGG | - | chr4_2:55567135-55567154 | Msa0608440:intron | 25.0% |
| ! | ATAAACATTGTGTTTCCTAT+TGG | - | chr4_2:55567284-55567303 | Msa0608440:intron | 25.0% |
| ! | AATTGAAAAGTTAATGAAGG+AGG | + | chr4_2:55567409-55567428 | None:intergenic | 25.0% |
| !!! | ATTTATTTTTGTCCTGATAG+TGG | - | chr4_2:55567434-55567453 | Msa0608440:intron | 25.0% |
| !!! | AGAAAATTGAAGGTTGTTTT+TGG | - | chr4_2:55567789-55567808 | Msa0608440:intron | 25.0% |
| ! | ATGAATTGATAGAGATATTG+AGG | + | chr4_2:55568088-55568107 | None:intergenic | 25.0% |
| !! | TTTCATTCTTAGAGTTGATT+AGG | - | chr4_2:55568255-55568274 | Msa0608440:intron | 25.0% |
| ! | GGTTCAAATGAAAAAAATAG+AGG | - | chr4_2:55568422-55568441 | Msa0608440:intron | 25.0% |
| !! | CAGCTTATGATAATTTTAGA+GGG | + | chr4_2:55568514-55568533 | None:intergenic | 25.0% |
| !! | TCAGCTTATGATAATTTTAG+AGG | + | chr4_2:55568515-55568534 | None:intergenic | 25.0% |
| ! | ACATAAAAACTGTCAATGAA+GGG | + | chr4_2:55568613-55568632 | None:intergenic | 25.0% |
| ! | AACATAAAAACTGTCAATGA+AGG | + | chr4_2:55568614-55568633 | None:intergenic | 25.0% |
| ! | TCAGCAAAAAACATTGAAAT+CGG | - | chr4_2:55568754-55568773 | Msa0608440:intron | 25.0% |
| ! | TTGTTCCCTAAAATATACTT+TGG | - | chr4_2:55568814-55568833 | Msa0608440:intron | 25.0% |
| ! | TGAGCTAAAAATTATGCTAT+CGG | - | chr4_2:55568923-55568942 | Msa0608440:intron | 25.0% |
| !! | ATAAATAAGTTTGAGGCATT+CGG | - | chr4_2:55568972-55568991 | Msa0608440:intron | 25.0% |
| ! | TCTAAACTATAAAACAAACC+AGG | + | chr4_2:55569647-55569666 | None:intergenic | 25.0% |
| !!! | ATGTCATTGATTTCAAAACA+TGG | + | chr4_2:55569720-55569739 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTACCAATGCAAA+TGG | - | chr4_2:55569881-55569900 | Msa0608440:intron | 25.0% |
| !! | TTTTCTTAATTTTTGCTGGT+GGG | - | chr4_2:55569940-55569959 | Msa0608440:intron | 25.0% |
| ! | AAATAATCATCAATTTCAGC+TGG | + | chr4_2:55570065-55570084 | None:intergenic | 25.0% |
| !! | AGCTGAAATTGATGATTATT+TGG | - | chr4_2:55570064-55570083 | Msa0608440:intron | 25.0% |
| !! | GCTGAAATTGATGATTATTT+GGG | - | chr4_2:55570065-55570084 | Msa0608440:intron | 25.0% |
| ! | TATGAAATAAACACCAACTT+CGG | + | chr4_2:55570134-55570153 | None:intergenic | 25.0% |
| ! | ATCATACATTTAAACAAGCT+GGG | + | chr4_2:55570300-55570319 | None:intergenic | 25.0% |
| ! | TATCATACATTTAAACAAGC+TGG | + | chr4_2:55570301-55570320 | None:intergenic | 25.0% |
| ! | TAAATAAGATAAGGTGCAAT+CGG | + | chr4_2:55570372-55570391 | None:intergenic | 25.0% |
| ! | CATCGCAAATAAATAAGATA+AGG | + | chr4_2:55570381-55570400 | None:intergenic | 25.0% |
| ! | CTTATTTATTTGCGATGAAT+TGG | - | chr4_2:55570384-55570403 | Msa0608440:five_prime_UTR | 25.0% |
| ! | TATTTATTTGCGATGAATTG+GGG | - | chr4_2:55570386-55570405 | Msa0608440:five_prime_UTR | 25.0% |
| !! | GATTTTAGTATTTCTTACCC+AGG | + | chr4_2:55564132-55564151 | None:intergenic | 30.0% |
| ACAAGTATACAAACATGAGT+GGG | + | chr4_2:55564169-55564188 | None:intergenic | 30.0% | |
| AACAAGTATACAAACATGAG+TGG | + | chr4_2:55564170-55564189 | None:intergenic | 30.0% | |
| !! | AGGGTGTTTTTGTCATTTAT+GGG | + | chr4_2:55564313-55564332 | None:intergenic | 30.0% |
| !!! | AAGGGTGTTTTTGTCATTTA+TGG | + | chr4_2:55564314-55564333 | None:intergenic | 30.0% |
| !! | GCAAAAATTTTGGGTGAATT+GGG | + | chr4_2:55564352-55564371 | None:intergenic | 30.0% |
| !! | TGCAAAAATTTTGGGTGAAT+TGG | + | chr4_2:55564353-55564372 | None:intergenic | 30.0% |
| ! | GAGAACGATTGCAAAAATTT+TGG | + | chr4_2:55564362-55564381 | None:intergenic | 30.0% |
| !!! | AAGCAATTTTGAAACAACCA+AGG | - | chr4_2:55564433-55564452 | Msa0608440:three_prime_UTR | 30.0% |
| ! | ATGTTTCTGCAATTCAGATT+AGG | - | chr4_2:55564548-55564567 | Msa0608440:intron | 30.0% |
| ! | AATTGATGATCATGCTGAAT+TGG | + | chr4_2:55564629-55564648 | None:intergenic | 30.0% |
| ACCCATAAACTCTAAATTGA+TGG | + | chr4_2:55564707-55564726 | None:intergenic | 30.0% | |
| ! | AATTTAGAGTTTATGGGTGA+AGG | - | chr4_2:55564709-55564728 | Msa0608440:intron | 30.0% |
| TATATGAAAAGGGCAAATGT+TGG | - | chr4_2:55564760-55564779 | Msa0608440:intron | 30.0% | |
| TGAACTTGGAATTGTAATTC+TGG | + | chr4_2:55564821-55564840 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTCTTGACTAGGGT+TGG | - | chr4_2:55564866-55564885 | Msa0608440:intron | 30.0% |
| AAAGAAACTCCCATCTATAT+TGG | - | chr4_2:55565102-55565121 | Msa0608440:intron | 30.0% | |
| CTTCATCAACCAATATAGAT+GGG | + | chr4_2:55565114-55565133 | None:intergenic | 30.0% | |
| ! | CTCTTTTGTCATATGATTTC+AGG | - | chr4_2:55565212-55565231 | Msa0608440:intron | 30.0% |
| CTGTATACAACACCTATATT+TGG | + | chr4_2:55565261-55565280 | None:intergenic | 30.0% | |
| ! | CAAATATAGGTGTTGTATAC+AGG | - | chr4_2:55565259-55565278 | Msa0608440:intron | 30.0% |
| ! | ACTATTATTTCTCTGTACAG+AGG | - | chr4_2:55565330-55565349 | Msa0608440:intron | 30.0% |
| TAACAGAGAATTCTATCCAA+AGG | - | chr4_2:55565498-55565517 | Msa0608440:intron | 30.0% | |
| CATTCATCAAGTACTTATGA+TGG | + | chr4_2:55565546-55565565 | None:intergenic | 30.0% | |
| CAGTTATGATGTTATCATAG+GGG | + | chr4_2:55565589-55565608 | None:intergenic | 30.0% | |
| ACATTGTAAACTGTTAGCAT+TGG | - | chr4_2:55565759-55565778 | Msa0608440:CDS | 30.0% | |
| ! | AGCATTGGAATAGTGTAAAA+TGG | - | chr4_2:55565774-55565793 | Msa0608440:CDS | 30.0% |
| GTCATACACTAAAAGTTCAA+CGG | + | chr4_2:55566073-55566092 | None:intergenic | 30.0% | |
| !!! | ATTTTGTCTTTGTTGTTCAG+TGG | - | chr4_2:55566145-55566164 | Msa0608440:intron | 30.0% |
| GGTAGTGTACTTTATATAGT+CGG | + | chr4_2:55566231-55566250 | None:intergenic | 30.0% | |
| GAGTCATATTGACCAAATAT+TGG | + | chr4_2:55566288-55566307 | None:intergenic | 30.0% | |
| AAAAGAATAACTAAGATCCC+AGG | + | chr4_2:55566416-55566435 | None:intergenic | 30.0% | |
| ! | TTGCCTTTTCTGTTATCATT+TGG | - | chr4_2:55566530-55566549 | Msa0608440:intron | 30.0% |
| !!! | TCTATCTTTCCTTTTTTTGG+AGG | + | chr4_2:55566822-55566841 | None:intergenic | 30.0% |
| !!! | CTCTCTATCTTTCCTTTTTT+TGG | + | chr4_2:55566825-55566844 | None:intergenic | 30.0% |
| AAAAAAAAAAAGGACACAGG+TGG | + | chr4_2:55566917-55566936 | None:intergenic | 30.0% | |
| !!! | TTGAATCTTTTTTAGTGAGG+GGG | + | chr4_2:55566963-55566982 | None:intergenic | 30.0% |
| !!! | GTTGAATCTTTTTTAGTGAG+GGG | + | chr4_2:55566964-55566983 | None:intergenic | 30.0% |
| !!! | CTGTTGAATCTTTTTTAGTG+AGG | + | chr4_2:55566966-55566985 | None:intergenic | 30.0% |
| ACAATAGGTTTCATGTTGAT+TGG | + | chr4_2:55567009-55567028 | None:intergenic | 30.0% | |
| ATTGTGAAACTTTCCAAATC+TGG | - | chr4_2:55567056-55567075 | Msa0608440:CDS | 30.0% | |
| CCGATTATCATTAAATGTTG+AGG | - | chr4_2:55567134-55567153 | Msa0608440:intron | 30.0% | |
| GGTTCATTATGAATTCCAAT+AGG | + | chr4_2:55567302-55567321 | None:intergenic | 30.0% | |
| TGCGTGTAAAAATAAGTAAG+AGG | + | chr4_2:55567361-55567380 | None:intergenic | 30.0% | |
| AGGAGGAAAATAGAAGAAAA+AGG | + | chr4_2:55567392-55567411 | None:intergenic | 30.0% | |
| ! | TAATGGACCACAATTATATC+AGG | - | chr4_2:55567502-55567521 | Msa0608440:intron | 30.0% |
| CAAGAAAAATATGAACCTGA+TGG | + | chr4_2:55567842-55567861 | None:intergenic | 30.0% | |
| ! | CATCAGGTTCATATTTTTCT+TGG | - | chr4_2:55567840-55567859 | Msa0608440:intron | 30.0% |
| !! | CAATGTTTTAGGCAAATATG+TGG | - | chr4_2:55567942-55567961 | Msa0608440:CDS | 30.0% |
| TAAAGTTTCAACCCACATAA+TGG | + | chr4_2:55568003-55568022 | None:intergenic | 30.0% | |
| !!! | GGAGCAACATTTTGATTAAA+CGG | + | chr4_2:55568323-55568342 | None:intergenic | 30.0% |
| !! | TCAGTGTTTTAAATTGGAGA+AGG | - | chr4_2:55568374-55568393 | Msa0608440:CDS | 30.0% |
| AATAGAGGCTAATGTTATCT+AGG | - | chr4_2:55568437-55568456 | Msa0608440:intron | 30.0% | |
| ATAGAGGCTAATGTTATCTA+GGG | - | chr4_2:55568438-55568457 | Msa0608440:intron | 30.0% | |
| CAGACAAGAAAAAAGAAAAG+AGG | + | chr4_2:55568645-55568664 | None:intergenic | 30.0% | |
| !!! | TTATTTTTTCGGTGTTTTCC+AGG | - | chr4_2:55568716-55568735 | Msa0608440:intron | 30.0% |
| ! | GTCTGCCAAAGTATATTTTA+GGG | + | chr4_2:55568822-55568841 | None:intergenic | 30.0% |
| ! | AGTCTGCCAAAGTATATTTT+AGG | + | chr4_2:55568823-55568842 | None:intergenic | 30.0% |
| TATTTGAACCTTGTATCATC+TGG | - | chr4_2:55568881-55568900 | Msa0608440:intron | 30.0% | |
| !! | TAGCTTTTAGGTATTCAGAT+TGG | + | chr4_2:55568953-55568972 | None:intergenic | 30.0% |
| ! | TAAATAAGTTTGAGGCATTC+GGG | - | chr4_2:55568973-55568992 | Msa0608440:intron | 30.0% |
| TTATCTTCATTTGAGTAGCT+AGG | + | chr4_2:55569025-55569044 | None:intergenic | 30.0% | |
| AGCTACTCAAATGAAGATAA+TGG | - | chr4_2:55569025-55569044 | Msa0608440:intron | 30.0% | |
| !!! | CTTGTTTTACATTCGTATCA+TGG | - | chr4_2:55569051-55569070 | Msa0608440:intron | 30.0% |
| !! | TACTCTATTTTAGACAAACC+TGG | - | chr4_2:55569626-55569645 | Msa0608440:intron | 30.0% |
| TGATGAGAAACAAGAACATT+TGG | + | chr4_2:55569697-55569716 | None:intergenic | 30.0% | |
| AATGGAGGCTAATTAAAATC+AGG | - | chr4_2:55569779-55569798 | Msa0608440:intron | 30.0% | |
| GTTTGTCAAACAATGAAATG+TGG | + | chr4_2:55569813-55569832 | None:intergenic | 30.0% | |
| ! | TGCTACTTACAAAATGCATT+GGG | + | chr4_2:55569914-55569933 | None:intergenic | 30.0% |
| ! | TTGCTACTTACAAAATGCAT+TGG | + | chr4_2:55569915-55569934 | None:intergenic | 30.0% |
| ! | CTTTTCTTAATTTTTGCTGG+TGG | - | chr4_2:55569939-55569958 | Msa0608440:intron | 30.0% |
| ! | TTTCTTAATTTTTGCTGGTG+GGG | - | chr4_2:55569941-55569960 | Msa0608440:intron | 30.0% |
| !!! | AAGTTTTTTGTTTTGAACGC+CGG | - | chr4_2:55569996-55570015 | Msa0608440:intron | 30.0% |
| ACAAATTAAGTTACCGAATC+CGG | + | chr4_2:55570018-55570037 | None:intergenic | 30.0% | |
| ATGAAATAAACACCAACTTC+GGG | + | chr4_2:55570133-55570152 | None:intergenic | 30.0% | |
| TATGGTAATTCTGATGACTT+TGG | + | chr4_2:55570247-55570266 | None:intergenic | 30.0% | |
| GAATTGGGGATCTTAAATTA+AGG | - | chr4_2:55570400-55570419 | Msa0608440:five_prime_UTR | 30.0% | |
| ! | GGTGTTGAAATAGAAAGTGT+AGG | + | chr4_2:55564194-55564213 | None:intergenic | 35.0% |
| ATTTCAACACCGAACGAATA+CGG | - | chr4_2:55564203-55564222 | Msa0608440:three_prime_UTR | 35.0% | |
| ACAAAATTCGACTGTACTGT+TGG | + | chr4_2:55564231-55564250 | None:intergenic | 35.0% | |
| ! | TTTGTTTCTCTTTCCAGTTC+AGG | - | chr4_2:55564246-55564265 | Msa0608440:intron | 35.0% |
| GTGTAACCAGAAACATTCAA+AGG | + | chr4_2:55564291-55564310 | None:intergenic | 35.0% | |
| TGTTTCAAAATTGCTTCGAG+AGG | + | chr4_2:55564429-55564448 | None:intergenic | 35.0% | |
| ! | CTTACAACTTTTAGTCCTTC+TGG | - | chr4_2:55564983-55565002 | Msa0608440:intron | 35.0% |
| GCTTCATCAACCAATATAGA+TGG | + | chr4_2:55565115-55565134 | None:intergenic | 35.0% | |
| ! | CTTCATACTTTGGTAGTTGA+TGG | - | chr4_2:55565359-55565378 | Msa0608440:intron | 35.0% |
| ATGCCATTGAAGTTTCTGTT+GGG | - | chr4_2:55565412-55565431 | Msa0608440:intron | 35.0% | |
| ! | TATGATGGTTTGTAAACGCA+AGG | + | chr4_2:55565531-55565550 | None:intergenic | 35.0% |
| GTATAGAGTGGAAATAGATG+TGG | - | chr4_2:55565681-55565700 | Msa0608440:intron | 35.0% | |
| ! | GAACTTTTAGTGTATGACAG+AGG | - | chr4_2:55566075-55566094 | Msa0608440:intron | 35.0% |
| !!! | TGCTTTTTCGAACCAATACT+CGG | + | chr4_2:55566186-55566205 | None:intergenic | 35.0% |
| GAATAGGAAGAACTACATAC+AGG | + | chr4_2:55566344-55566363 | None:intergenic | 35.0% | |
| GCAATCAGAAATGAAGGAAT+AGG | + | chr4_2:55566360-55566379 | None:intergenic | 35.0% | |
| TTCCTTCATTTCTGATTGCT+TGG | - | chr4_2:55566361-55566380 | Msa0608440:intron | 35.0% | |
| TTCCAAGCAATCAGAAATGA+AGG | + | chr4_2:55566366-55566385 | None:intergenic | 35.0% | |
| CTGATTGCTTGGAATGAATT+AGG | - | chr4_2:55566372-55566391 | Msa0608440:CDS | 35.0% | |
| ATGATAACAGAAAAGGCAAC+AGG | + | chr4_2:55566529-55566548 | None:intergenic | 35.0% | |
| CTGAGTAAATTCCTGCATAA+CGG | + | chr4_2:55566661-55566680 | None:intergenic | 35.0% | |
| ACGGTCAAAACATTTCTGAA+AGG | + | chr4_2:55566748-55566767 | None:intergenic | 35.0% | |
| CGATTAATGTCTACCAGATT+TGG | + | chr4_2:55567072-55567091 | None:intergenic | 35.0% | |
| ! | TAATGATAATCGGGGTGTTA+TGG | + | chr4_2:55567127-55567146 | None:intergenic | 35.0% |
| ! | AACAAAGTGCCTGAAATTTG+AGG | - | chr4_2:55567177-55567196 | Msa0608440:intron | 35.0% |
| TTCGAAATGCCTCAAATTTC+AGG | + | chr4_2:55567189-55567208 | None:intergenic | 35.0% | |
| ! | CATGAGTTAGTTTCATGCAA+CGG | - | chr4_2:55567241-55567260 | Msa0608440:intron | 35.0% |
| TGCATGCAGATTAGATTTAG+AGG | + | chr4_2:55567323-55567342 | None:intergenic | 35.0% | |
| GACCACAATTATATCAGGTA+TGG | - | chr4_2:55567507-55567526 | Msa0608440:intron | 35.0% | |
| TGCCATACCTGATATAATTG+TGG | + | chr4_2:55567512-55567531 | None:intergenic | 35.0% | |
| TCTAGACAGTATTCACTCAT+TGG | - | chr4_2:55567551-55567570 | Msa0608440:intron | 35.0% | |
| TGTGTTTGATGAGTTCATAC+TGG | - | chr4_2:55567706-55567725 | Msa0608440:intron | 35.0% | |
| !! | ACTGCAGTTTTTAGAGAAAG+AGG | - | chr4_2:55567766-55567785 | Msa0608440:intron | 35.0% |
| GAGAAAGAGGAGAAAATTGA+AGG | - | chr4_2:55567779-55567798 | Msa0608440:intron | 35.0% | |
| !! | GTGCAATTTGTATTTGCTGT+AGG | - | chr4_2:55567811-55567830 | Msa0608440:intron | 35.0% |
| !! | CAATTTGTATTTGCTGTAGG+TGG | - | chr4_2:55567814-55567833 | Msa0608440:intron | 35.0% |
| CTAAGACATTTCTTGAGAAG+AGG | - | chr4_2:55567897-55567916 | Msa0608440:CDS | 35.0% | |
| ATCATCAAGCTCCATATCAT+CGG | + | chr4_2:55568144-55568163 | None:intergenic | 35.0% | |
| CAATATTGACACTCAAGGAA+GGG | - | chr4_2:55568177-55568196 | Msa0608440:intron | 35.0% | |
| ! | CATTCTTAGAGTTGATTAGG+AGG | - | chr4_2:55568258-55568277 | Msa0608440:intron | 35.0% |
| ! | AAGGAAAGTTCGTCTAAGAT+TGG | - | chr4_2:55568393-55568412 | Msa0608440:intron | 35.0% |
| GTGATCTTGACATTTACCAA+AGG | - | chr4_2:55568483-55568502 | Msa0608440:intron | 35.0% | |
| ! | TAAGCTGACTTTATGTTAGC+AGG | - | chr4_2:55568527-55568546 | Msa0608440:intron | 35.0% |
| ! | AAGCTGACTTTATGTTAGCA+GGG | - | chr4_2:55568528-55568547 | Msa0608440:intron | 35.0% |
| !! | AAGGGATTAGTTTCAAAGAC+TGG | + | chr4_2:55568691-55568710 | None:intergenic | 35.0% |
| AACATTGAAATCGGCATCAT+TGG | - | chr4_2:55568763-55568782 | Msa0608440:intron | 35.0% | |
| GAAAGAAACCAGATGATACA+AGG | + | chr4_2:55568892-55568911 | None:intergenic | 35.0% | |
| GTGAAAACCACAACTGAATA+TGG | + | chr4_2:55569099-55569118 | None:intergenic | 35.0% | |
| ! | TCAAGTCAAGGTATCTAGAA+GGG | + | chr4_2:55569342-55569361 | None:intergenic | 35.0% |
| ! | AATTCCCACTTGCCTAATTT+TGG | + | chr4_2:55569506-55569525 | None:intergenic | 35.0% |
| AAATTAGGCAAGTGGGAATT+AGG | - | chr4_2:55569506-55569525 | Msa0608440:CDS | 35.0% | |
| AATTAGGCAAGTGGGAATTA+GGG | - | chr4_2:55569507-55569526 | Msa0608440:CDS | 35.0% | |
| TGATCAATGAAGACTTGTGA+TGG | - | chr4_2:55570183-55570202 | Msa0608440:five_prime_UTR | 35.0% | |
| AAAAACAAGCTGGGTTTGTA+TGG | + | chr4_2:55570265-55570284 | None:intergenic | 35.0% | |
| !!! | ACAAACCCAGCTTGTTTTTT+TGG | - | chr4_2:55570266-55570285 | Msa0608440:five_prime_UTR | 35.0% |
| TTGTGCCAAAAAAACAAGCT+GGG | + | chr4_2:55570274-55570293 | None:intergenic | 35.0% | |
| TTTGTGCCAAAAAAACAAGC+TGG | + | chr4_2:55570275-55570294 | None:intergenic | 35.0% | |
| AGGTGCAATCGGATAATAAA+AGG | + | chr4_2:55570361-55570380 | None:intergenic | 35.0% | |
| AGGAGATGACAATGAAGGAA+GGG | + | chr4_2:55564392-55564411 | None:intergenic | 40.0% | |
| AAACGCAAAACACACAGCAA+TGG | + | chr4_2:55564503-55564522 | None:intergenic | 40.0% | |
| TTATGGGTGAAGGTTTAGAG+TGG | - | chr4_2:55564719-55564738 | Msa0608440:intron | 40.0% | |
| ATTTGAACAAGCTTGCCAGA+AGG | + | chr4_2:55565001-55565020 | None:intergenic | 40.0% | |
| GATGCCATTGAAGTTTCTGT+TGG | - | chr4_2:55565411-55565430 | Msa0608440:intron | 40.0% | |
| GTTCCCAACAGAAACTTCAA+TGG | + | chr4_2:55565418-55565437 | None:intergenic | 40.0% | |
| ! | ATGGTTTGTAAACGCAAGGA+GGG | + | chr4_2:55565527-55565546 | None:intergenic | 40.0% |
| ATAGGGGAGAATCAGTTTAG+GGG | + | chr4_2:55565573-55565592 | None:intergenic | 40.0% | |
| CATAGGGGAGAATCAGTTTA+GGG | + | chr4_2:55565574-55565593 | None:intergenic | 40.0% | |
| TCATAGGGGAGAATCAGTTT+AGG | + | chr4_2:55565575-55565594 | None:intergenic | 40.0% | |
| GGAAGTGACTCAACTTAGTT+GGG | - | chr4_2:55565632-55565651 | Msa0608440:intron | 40.0% | |
| CATATATGCATGTGAGCATG+AGG | - | chr4_2:55565834-55565853 | Msa0608440:intron | 40.0% | |
| TCAACGGCAATGGAAAAAGT+AGG | + | chr4_2:55566057-55566076 | None:intergenic | 40.0% | |
| CACTAAAAGTTCAACGGCAA+TGG | + | chr4_2:55566067-55566086 | None:intergenic | 40.0% | |
| !! | TCTTTGTTGTTCAGTGGCAT+GGG | - | chr4_2:55566151-55566170 | Msa0608440:intron | 40.0% |
| GGTTCGAAAAAGCAGAAAAC+AGG | - | chr4_2:55566192-55566211 | Msa0608440:intron | 40.0% | |
| CTTCCTGTTCTGCCAATATT+TGG | - | chr4_2:55566273-55566292 | Msa0608440:intron | 40.0% | |
| TGACCAAATATTGGCAGAAC+AGG | + | chr4_2:55566279-55566298 | None:intergenic | 40.0% | |
| ! | ACACATTTCCTTTTCGAACC+TGG | - | chr4_2:55566395-55566414 | Msa0608440:CDS | 40.0% |
| ! | CACATTTCCTTTTCGAACCT+GGG | - | chr4_2:55566396-55566415 | Msa0608440:CDS | 40.0% |
| CACTCAGAATTCATCTCACA+AGG | + | chr4_2:55566444-55566463 | None:intergenic | 40.0% | |
| GTGAGATGAATTCTGAGTGT+TGG | - | chr4_2:55566445-55566464 | Msa0608440:intron | 40.0% | |
| ATGCAGGAATTTACTCAGTC+TGG | - | chr4_2:55566663-55566682 | Msa0608440:CDS | 40.0% | |
| TGCAGGAATTTACTCAGTCT+GGG | - | chr4_2:55566664-55566683 | Msa0608440:CDS | 40.0% | |
| TATGCCACTCCTCCAAAAAA+AGG | - | chr4_2:55566810-55566829 | Msa0608440:intron | 40.0% | |
| !!! | CTTTCCTTTTTTTGGAGGAG+TGG | + | chr4_2:55566817-55566836 | None:intergenic | 40.0% |
| !! | CCAAAAACTCAAAGTTGGTG+AGG | + | chr4_2:55566875-55566894 | None:intergenic | 40.0% |
| !! | CCTCACCAACTTTGAGTTTT+TGG | - | chr4_2:55566872-55566891 | Msa0608440:intron | 40.0% |
| !! | TTTTTAGTGAGGGGGTGATA+AGG | + | chr4_2:55566955-55566974 | None:intergenic | 40.0% |
| ! | GTTAGTTTCATGCAACGGTT+CGG | - | chr4_2:55567246-55567265 | Msa0608440:intron | 40.0% |
| ! | GTTGCTGGGTTTGATGATAA+TGG | - | chr4_2:55567485-55567504 | Msa0608440:intron | 40.0% |
| TTCTTGGAAAGCTTCTGCTA+TGG | - | chr4_2:55567856-55567875 | Msa0608440:intron | 40.0% | |
| TCTTGGAAAGCTTCTGCTAT+GGG | - | chr4_2:55567857-55567876 | Msa0608440:intron | 40.0% | |
| ATCATCGGTGTACCTAGAAT+TGG | + | chr4_2:55568129-55568148 | None:intergenic | 40.0% | |
| TTCTAGGTACACCGATGATA+TGG | - | chr4_2:55568130-55568149 | Msa0608440:intron | 40.0% | |
| TGAGTGTCAATATTGCTGTG+TGG | + | chr4_2:55568172-55568191 | None:intergenic | 40.0% | |
| CACAGCAATATTGACACTCA+AGG | - | chr4_2:55568172-55568191 | Msa0608440:intron | 40.0% | |
| GCAATATTGACACTCAAGGA+AGG | - | chr4_2:55568176-55568195 | Msa0608440:intron | 40.0% | |
| ATCAAAATGTTGCTCCCTCT+CGG | - | chr4_2:55568327-55568346 | Msa0608440:intron | 40.0% | |
| CTATCATACACTATCCGAGA+GGG | + | chr4_2:55568344-55568363 | None:intergenic | 40.0% | |
| !! | TTCGTCTAAGATTGGCTTCT+TGG | - | chr4_2:55568401-55568420 | Msa0608440:intron | 40.0% |
| !! | ATTTTAGAGGGACAAGCCTT+TGG | + | chr4_2:55568502-55568521 | None:intergenic | 40.0% |
| TTGGTGCAGACAAAAAGTTC+AGG | - | chr4_2:55568782-55568801 | Msa0608440:intron | 40.0% | |
| CAACTGAATATGGTCTGACT+TGG | + | chr4_2:55569089-55569108 | None:intergenic | 40.0% | |
| AGTCAGACCATATTCAGTTG+TGG | - | chr4_2:55569089-55569108 | Msa0608440:intron | 40.0% | |
| TGGCAACAATAGTAGACTGT+CGG | + | chr4_2:55569155-55569174 | None:intergenic | 40.0% | |
| GCAAGTGGAGGAATATTATG+TGG | + | chr4_2:55569175-55569194 | None:intergenic | 40.0% | |
| ! | GTCAAGTCAAGGTATCTAGA+AGG | + | chr4_2:55569343-55569362 | None:intergenic | 40.0% |
| CAACAGTAGTAGTCAAGTCA+AGG | + | chr4_2:55569354-55569373 | None:intergenic | 40.0% | |
| !! | AATGACTGTAGAGAGGTGTT+TGG | + | chr4_2:55569386-55569405 | None:intergenic | 40.0% |
| CGGATTTAATGACTGTAGAG+AGG | + | chr4_2:55569393-55569412 | None:intergenic | 40.0% | |
| CACTTGTGACCACCAAAATT+AGG | - | chr4_2:55569491-55569510 | Msa0608440:CDS | 40.0% | |
| ACCACCAAAATTAGGCAAGT+GGG | - | chr4_2:55569499-55569518 | Msa0608440:CDS | 40.0% | |
| GGGAAGTTATCCATTTGCAT+TGG | + | chr4_2:55569894-55569913 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTGAACGCCGGATT+CGG | - | chr4_2:55570002-55570021 | Msa0608440:intron | 40.0% |
| !! | CTGTTGGTTCCGTATTCGTT+CGG | + | chr4_2:55564215-55564234 | None:intergenic | 45.0% |
| TGACAATGAAGGAAGGGTTC+AGG | + | chr4_2:55564386-55564405 | None:intergenic | 45.0% | |
| GAGGAGATGACAATGAAGGA+AGG | + | chr4_2:55564393-55564412 | None:intergenic | 45.0% | |
| GGAAGAGGAGATGACAATGA+AGG | + | chr4_2:55564397-55564416 | None:intergenic | 45.0% | |
| !!! | GAGAGGAACTGTTTTGGAAG+AGG | + | chr4_2:55564412-55564431 | None:intergenic | 45.0% |
| ! | TGCTTCGAGAGGAACTGTTT+TGG | + | chr4_2:55564418-55564437 | None:intergenic | 45.0% |
| ! | GGTGAAGGTTTAGAGTGGAA+GGG | - | chr4_2:55564724-55564743 | Msa0608440:intron | 45.0% |
| AGTTTGTCCAGAACCAACAG+CGG | + | chr4_2:55565038-55565057 | None:intergenic | 45.0% | |
| !! | GGTTCTGGACAAACTTCTCT+CGG | - | chr4_2:55565043-55565062 | Msa0608440:intron | 45.0% |
| CTCGGTATCAAAGCTGCAAA+TGG | - | chr4_2:55565061-55565080 | Msa0608440:intron | 45.0% | |
| GAGGTAGCTGCTTCATACTT+TGG | - | chr4_2:55565349-55565368 | Msa0608440:intron | 45.0% | |
| ! | GATGGTTTGTAAACGCAAGG+AGG | + | chr4_2:55565528-55565547 | None:intergenic | 45.0% |
| TTCCTAGATAGAGCAACCTG+AGG | - | chr4_2:55565610-55565629 | Msa0608440:intron | 45.0% | |
| TCCTAGATAGAGCAACCTGA+GGG | - | chr4_2:55565611-55565630 | Msa0608440:intron | 45.0% | |
| ! | TAAGTTGAGTCACTTCCCTC+AGG | + | chr4_2:55565629-55565648 | None:intergenic | 45.0% |
| GGGAAGTGACTCAACTTAGT+TGG | - | chr4_2:55565631-55565650 | Msa0608440:intron | 45.0% | |
| ATATGCATGTGAGCATGAGG+TGG | - | chr4_2:55565837-55565856 | Msa0608440:intron | 45.0% | |
| !! | GTCTTTGTTGTTCAGTGGCA+TGG | - | chr4_2:55566150-55566169 | Msa0608440:intron | 45.0% |
| CGAACCAATACTCGGAAATC+AGG | + | chr4_2:55566178-55566197 | None:intergenic | 45.0% | |
| CTAAGATCCCAGGTTCGAAA+AGG | + | chr4_2:55566406-55566425 | None:intergenic | 45.0% | |
| ! | ACAAGTTGAGTGACAGGGAT+TGG | + | chr4_2:55566624-55566643 | None:intergenic | 45.0% |
| TCCCTGTCACTCAACTTGTA+AGG | - | chr4_2:55566625-55566644 | Msa0608440:intron | 45.0% | |
| ! | CCCTTACAAGTTGAGTGACA+GGG | + | chr4_2:55566629-55566648 | None:intergenic | 45.0% |
| CCCTGTCACTCAACTTGTAA+GGG | - | chr4_2:55566626-55566645 | Msa0608440:intron | 45.0% | |
| ! | TCCCTTACAAGTTGAGTGAC+AGG | + | chr4_2:55566630-55566649 | None:intergenic | 45.0% |
| CTGCATGCAGTGAACTTAGT+TGG | - | chr4_2:55567334-55567353 | Msa0608440:intron | 45.0% | |
| !! | TTTGTCCTGATAGTGGTGTC+CGG | - | chr4_2:55567441-55567460 | Msa0608440:intron | 45.0% |
| ACAAGCAGAGACACTCCAAA+TGG | + | chr4_2:55567467-55567486 | None:intergenic | 45.0% | |
| CCAATGAGCGAATACTGTCT+TGG | + | chr4_2:55567608-55567627 | None:intergenic | 45.0% | |
| CCAAGACAGTATTCGCTCAT+TGG | - | chr4_2:55567605-55567624 | Msa0608440:intron | 45.0% | |
| CCAATGAGCGAATACTGTCT+TGG | + | chr4_2:55567608-55567627 | None:intergenic | 45.0% | |
| CCAAGACAGTATTCGCTCAT+TGG | - | chr4_2:55567605-55567624 | Msa0608440:intron | 45.0% | |
| CTTGGAAAGCTTCTGCTATG+GGG | - | chr4_2:55567858-55567877 | Msa0608440:intron | 45.0% | |
| !! | AACCCACATAATGGACACAG+CGG | + | chr4_2:55567994-55568013 | None:intergenic | 45.0% |
| ATTGACACTCAAGGAAGGGT+AGG | - | chr4_2:55568181-55568200 | Msa0608440:intron | 45.0% | |
| GCTATCATACACTATCCGAG+AGG | + | chr4_2:55568345-55568364 | None:intergenic | 45.0% | |
| !! | GGGCTTCAAGCTTGTTAGAT+TGG | - | chr4_2:55568548-55568567 | Msa0608440:intron | 45.0% |
| !!! | TTCGGTGTTTTCCAGGTTTG+AGG | - | chr4_2:55568723-55568742 | Msa0608440:intron | 45.0% |
| !! | TCGGTGTTTTCCAGGTTTGA+GGG | - | chr4_2:55568724-55568743 | Msa0608440:intron | 45.0% |
| GGCAACAATAGTAGACTGTC+GGG | + | chr4_2:55569154-55569173 | None:intergenic | 45.0% | |
| AGTATGTCACATGGTGACAG+TGG | + | chr4_2:55569210-55569229 | None:intergenic | 45.0% | |
| !! | AGATGGAGGGGTGTTACAAT+GGG | + | chr4_2:55569258-55569277 | None:intergenic | 45.0% |
| !! | AAGATGGAGGGGTGTTACAA+TGG | + | chr4_2:55569259-55569278 | None:intergenic | 45.0% |
| ! | AAGGTATCTAGAAGGGCAGT+CGG | + | chr4_2:55569335-55569354 | None:intergenic | 45.0% |
| GACCACCAAAATTAGGCAAG+TGG | - | chr4_2:55569498-55569517 | Msa0608440:CDS | 45.0% | |
| ! | TCCCACTTGCCTAATTTTGG+TGG | + | chr4_2:55569503-55569522 | None:intergenic | 45.0% |
| ! | CTTAATTTTTGCTGGTGGGG+TGG | - | chr4_2:55569944-55569963 | Msa0608440:intron | 45.0% |
| CAACTTCGGGAACATAAGGA+TGG | + | chr4_2:55570120-55570139 | None:intergenic | 45.0% | |
| CATCCTTATGTTCCCGAAGT+TGG | - | chr4_2:55570118-55570137 | Msa0608440:five_prime_UTR | 45.0% | |
| ACACCAACTTCGGGAACATA+AGG | + | chr4_2:55570124-55570143 | None:intergenic | 45.0% | |
| ATGAAGACTTGTGATGGCAC+TGG | - | chr4_2:55570189-55570208 | Msa0608440:five_prime_UTR | 45.0% | |
| ! | GGGTGAAGGTTTAGAGTGGA+AGG | - | chr4_2:55564723-55564742 | Msa0608440:intron | 50.0% |
| GAGCATGCTTTAACCGCTGT+TGG | - | chr4_2:55565022-55565041 | Msa0608440:intron | 50.0% | |
| !! | GCTTTAACCGCTGTTGGTTC+TGG | - | chr4_2:55565028-55565047 | Msa0608440:intron | 50.0% |
| AACGCAAGGAGGGAAACCTT+TGG | + | chr4_2:55565517-55565536 | None:intergenic | 50.0% | |
| ! | TCCCTCAGGTTGCTCTATCT+AGG | + | chr4_2:55565615-55565634 | None:intergenic | 50.0% |
| GGGTCCTGATTTCCGAGTAT+TGG | - | chr4_2:55566171-55566190 | Msa0608440:intron | 50.0% | |
| ! | GAGTGTCTCTGCTTGTTGCT+GGG | - | chr4_2:55567471-55567490 | Msa0608440:intron | 50.0% |
| TTGCTGTAGGTGGATCCATC+AGG | - | chr4_2:55567824-55567843 | Msa0608440:intron | 50.0% | |
| TGTCCGCTGTGTCCATTATG+TGG | - | chr4_2:55567988-55568007 | Msa0608440:intron | 50.0% | |
| GTCCGCTGTGTCCATTATGT+GGG | - | chr4_2:55567989-55568008 | Msa0608440:intron | 50.0% | |
| TGAGATCTGTCCCTCAAACC+TGG | + | chr4_2:55568737-55568756 | None:intergenic | 50.0% | |
| ! | AGTTTGAGGCATTCGGGTAG+CGG | - | chr4_2:55568979-55568998 | Msa0608440:intron | 50.0% |
| ! | AGGGTGTTTAGTGCAAGTGG+AGG | + | chr4_2:55569187-55569206 | None:intergenic | 50.0% |
| !! | TGGAGGGTGTTTAGTGCAAG+TGG | + | chr4_2:55569190-55569209 | None:intergenic | 50.0% |
| TGTCACATGGTGACAGTGGA+GGG | + | chr4_2:55569206-55569225 | None:intergenic | 50.0% | |
| ATGTCACATGGTGACAGTGG+AGG | + | chr4_2:55569207-55569226 | None:intergenic | 50.0% | |
| CGACGATGGAGTATGTCACA+TGG | + | chr4_2:55569219-55569238 | None:intergenic | 50.0% | |
| !! | ATGGAGGGGTGTTACAATGG+GGG | + | chr4_2:55569256-55569275 | None:intergenic | 50.0% |
| !! | GATGGAGGGGTGTTACAATG+GGG | + | chr4_2:55569257-55569276 | None:intergenic | 50.0% |
| TTGACAGCAGAGAGAGTGGT+GGG | + | chr4_2:55569284-55569303 | None:intergenic | 50.0% | |
| GTACTTGACAGCAGAGAGAG+TGG | + | chr4_2:55569288-55569307 | None:intergenic | 50.0% | |
| ! | AGTGTTGAGCAAGGATGGAG+AGG | + | chr4_2:55569310-55569329 | None:intergenic | 50.0% |
| !! | AGAGAGGTGTTTGGTGGTGA+TGG | + | chr4_2:55569377-55569396 | None:intergenic | 50.0% |
| !! | GACTGTAGAGAGGTGTTTGG+TGG | + | chr4_2:55569383-55569402 | None:intergenic | 50.0% |
| CCAGCAGCAATGATTGTGGA+CGG | + | chr4_2:55569413-55569432 | None:intergenic | 50.0% | |
| GAGTGACGACAATGGAAAGG+TGG | + | chr4_2:55569447-55569466 | None:intergenic | 50.0% | |
| CACGAGTGACGACAATGGAA+AGG | + | chr4_2:55569450-55569469 | None:intergenic | 50.0% | |
| !! | TTTTGGTGGTCACAAGTGCC+TGG | + | chr4_2:55569489-55569508 | None:intergenic | 50.0% |
| TAGGCAAGTGGGAATTAGGG+TGG | - | chr4_2:55569510-55569529 | Msa0608440:CDS | 50.0% | |
| GTGGGAATTAGGGTGGAAAG+AGG | - | chr4_2:55569517-55569536 | Msa0608440:CDS | 50.0% | |
| GTGGGAGAACTCACCTGAAC+TGG | + | chr4_2:55564262-55564281 | None:intergenic | 55.0% | |
| GGAAGTTGCTGCCGTTATGC+AGG | - | chr4_2:55566647-55566666 | Msa0608440:CDS | 55.0% | |
| AATGGCCGGACACCACTATC+AGG | + | chr4_2:55567449-55567468 | None:intergenic | 55.0% | |
| ! | GATAGTGGTGTCCGGCCATT+TGG | - | chr4_2:55567449-55567468 | Msa0608440:intron | 55.0% |
| GCAGAGACACTCCAAATGGC+CGG | + | chr4_2:55567463-55567482 | None:intergenic | 55.0% | |
| ! | GGAGTGTCTCTGCTTGTTGC+TGG | - | chr4_2:55567470-55567489 | Msa0608440:intron | 55.0% |
| ! | GTTTGAGGCATTCGGGTAGC+GGG | - | chr4_2:55568980-55568999 | Msa0608440:intron | 55.0% |
| ATACCACACGCTGACGACGA+TGG | + | chr4_2:55569233-55569252 | None:intergenic | 55.0% | |
| ! | AGTGGTGGGAGAAGATGGAG+GGG | + | chr4_2:55569270-55569289 | None:intergenic | 55.0% |
| ! | GAGTGGTGGGAGAAGATGGA+GGG | + | chr4_2:55569271-55569290 | None:intergenic | 55.0% |
| ! | AGAGTGGTGGGAGAAGATGG+AGG | + | chr4_2:55569272-55569291 | None:intergenic | 55.0% |
| ! | GAGAGAGTGGTGGGAGAAGA+TGG | + | chr4_2:55569275-55569294 | None:intergenic | 55.0% |
| CTTGACAGCAGAGAGAGTGG+TGG | + | chr4_2:55569285-55569304 | None:intergenic | 55.0% | |
| !! | CGGAGAGTGTTGAGCAAGGA+TGG | + | chr4_2:55569315-55569334 | None:intergenic | 55.0% |
| !! | CAGTCGGAGAGTGTTGAGCA+AGG | + | chr4_2:55569319-55569338 | None:intergenic | 55.0% |
| CCGTCCACAATCATTGCTGC+TGG | - | chr4_2:55569410-55569429 | Msa0608440:intron | 55.0% | |
| TGCGCCAGCAGCAATGATTG+TGG | + | chr4_2:55569417-55569436 | None:intergenic | 55.0% | |
| AGGGTCACGAGTGACGACAA+TGG | + | chr4_2:55569455-55569474 | None:intergenic | 55.0% | |
| TCACAAGTGCCTGGTGGCAA+TGG | + | chr4_2:55569480-55569499 | None:intergenic | 55.0% | |
| ! | TTTTGCTGGTGGGGTGGCAT+TGG | - | chr4_2:55569950-55569969 | Msa0608440:intron | 55.0% |
| TTTGCTGGTGGGGTGGCATT+GGG | - | chr4_2:55569951-55569970 | Msa0608440:intron | 55.0% | |
| !! | AGGCATTCGGGTAGCGGGTT+GGG | - | chr4_2:55568985-55569004 | Msa0608440:intron | 60.0% |
| ACTCCATCGTCGTCAGCGTG+TGG | - | chr4_2:55569227-55569246 | Msa0608440:intron | 60.0% | |
| TGACCCTCACCATTGCCACC+AGG | - | chr4_2:55569468-55569487 | Msa0608440:CDS | 60.0% | |
| GTGCCTGGTGGCAATGGTGA+GGG | + | chr4_2:55569474-55569493 | None:intergenic | 60.0% | |
| AGTGCCTGGTGGCAATGGTG+AGG | + | chr4_2:55569475-55569494 | None:intergenic | 60.0% | |
| TGGTGGTCACAAGTGCCTGG+TGG | + | chr4_2:55569486-55569505 | None:intergenic | 60.0% | |
| AGGGTGGAAAGAGGAGACGC+AGG | - | chr4_2:55569526-55569545 | Msa0608440:CDS | 60.0% | |
| TTGCTGGTGGGGTGGCATTG+GGG | - | chr4_2:55569952-55569971 | Msa0608440:intron | 60.0% | |
| !! | GAGGCATTCGGGTAGCGGGT+TGG | - | chr4_2:55568984-55569003 | Msa0608440:intron | 65.0% |
| !! | TCGGGTAGCGGGTTGGGACT+AGG | - | chr4_2:55568991-55569010 | Msa0608440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55564125 | 55570436 | 55564125 | ID=Msa0608440;Name=Msa0608440 |
| chr4_2 | mRNA | 55564125 | 55570436 | 55564125 | ID=Msa0608440-mRNA-1;Parent=Msa0608440;Name=Msa0608440-mRNA-1;_AED=0.09;_eAED=0.09;_QI=350|0.9|0.90|1|0.8|0.63|11|308|239 |
| chr4_2 | exon | 55564125 | 55564250 | 55564125 | ID=Msa0608440-mRNA-1:exon:14165;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55564279 | 55564509 | 55564279 | ID=Msa0608440-mRNA-1:exon:14164;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55565758 | 55565823 | 55565758 | ID=Msa0608440-mRNA-1:exon:14163;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55566363 | 55566425 | 55566363 | ID=Msa0608440-mRNA-1:exon:14162;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55566643 | 55566728 | 55566643 | ID=Msa0608440-mRNA-1:exon:14161;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55567038 | 55567107 | 55567038 | ID=Msa0608440-mRNA-1:exon:14160;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55567876 | 55567974 | 55567876 | ID=Msa0608440-mRNA-1:exon:14159;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55568340 | 55568396 | 55568340 | ID=Msa0608440-mRNA-1:exon:14158;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55569281 | 55569327 | 55569281 | ID=Msa0608440-mRNA-1:exon:14157;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55569423 | 55569625 | 55569423 | ID=Msa0608440-mRNA-1:exon:14156;Parent=Msa0608440-mRNA-1 |
| chr4_2 | exon | 55570107 | 55570436 | 55570107 | ID=Msa0608440-mRNA-1:exon:14155;Parent=Msa0608440-mRNA-1 |
| chr4_2 | five_prime_UTR | 55570107 | 55570436 | 55570107 | ID=Msa0608440-mRNA-1:five_prime_utr;Parent=Msa0608440-mRNA-1 |
| chr4_2 | five_prime_UTR | 55569606 | 55569625 | 55569606 | ID=Msa0608440-mRNA-1:five_prime_utr;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55569423 | 55569605 | 55569423 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55569281 | 55569327 | 55569281 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55568340 | 55568396 | 55568340 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55567876 | 55567974 | 55567876 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55567038 | 55567107 | 55567038 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55566643 | 55566728 | 55566643 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55566363 | 55566425 | 55566363 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55565758 | 55565823 | 55565758 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | CDS | 55564461 | 55564509 | 55564461 | ID=Msa0608440-mRNA-1:cds;Parent=Msa0608440-mRNA-1 |
| chr4_2 | three_prime_UTR | 55564279 | 55564460 | 55564279 | ID=Msa0608440-mRNA-1:three_prime_utr;Parent=Msa0608440-mRNA-1 |
| chr4_2 | three_prime_UTR | 55564125 | 55564250 | 55564125 | ID=Msa0608440-mRNA-1:three_prime_utr;Parent=Msa0608440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
