Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554860 | XP_013442471.1 | 95.816 | 239 | 6 | 1 | 1 | 239 | 1 | 235 | 5.59e-163 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554860 | sp|O23708|PSA2A_ARATH | 90.377 | 239 | 19 | 1 | 1 | 239 | 1 | 235 | 1.57e-156 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554860 | I3RZ63 | 95.816 | 239 | 6 | 1 | 1 | 239 | 1 | 235 | 2.67e-163 | 460 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042280 | Msa0554860 | 0.803444 | 3.475812e-49 | -8.615850e-47 |
| Msa0047160 | Msa0554860 | 0.816019 | 6.862677e-52 | -8.615850e-47 |
| Msa0052610 | Msa0554860 | 0.803449 | 3.467465e-49 | -8.615850e-47 |
| Msa0094470 | Msa0554860 | 0.805787 | 1.127642e-49 | -8.615850e-47 |
| Msa0097600 | Msa0554860 | 0.801284 | 9.681445e-49 | -8.615850e-47 |
| Msa0146770 | Msa0554860 | 0.811957 | 5.398818e-51 | -8.615850e-47 |
| Msa0167480 | Msa0554860 | 0.811483 | 6.844212e-51 | -8.615850e-47 |
| Msa0226470 | Msa0554860 | 0.805106 | 1.566667e-49 | -8.615850e-47 |
| Msa0227400 | Msa0554860 | 0.823223 | 1.555064e-53 | -8.615850e-47 |
| Msa0231660 | Msa0554860 | 0.802360 | 5.821121e-49 | -8.615850e-47 |
| Msa0278790 | Msa0554860 | 0.819649 | 1.039751e-52 | -8.615850e-47 |
| Msa0300350 | Msa0554860 | 0.800719 | 1.262934e-48 | -8.615850e-47 |
| Msa0554860 | Msa0561430 | 0.805641 | 1.210299e-49 | -8.615850e-47 |
| Msa0554860 | Msa0603320 | 0.800906 | 1.156639e-48 | -8.615850e-47 |
| Msa0554860 | Msa0608440 | 0.852572 | 4.228106e-61 | -8.615850e-47 |
| Msa0554860 | Msa0615440 | 0.804571 | 2.026201e-49 | -8.615850e-47 |
| Msa0554860 | Msa0691450 | 0.926457 | 4.565567e-91 | -8.615850e-47 |
| Msa0554860 | Msa0691900 | 0.818582 | 1.818593e-52 | -8.615850e-47 |
| Msa0554860 | Msa0698490 | 0.802076 | 6.659045e-49 | -8.615850e-47 |
| Msa0554860 | Msa0698660 | 0.804017 | 2.642993e-49 | -8.615850e-47 |
| Msa0554860 | Msa0738100 | 0.809072 | 2.266845e-50 | -8.615850e-47 |
| Msa0554860 | Msa0830390 | 0.808791 | 2.603795e-50 | -8.615850e-47 |
| Msa0554860 | Msa0925770 | 0.823434 | 1.388147e-53 | -8.615850e-47 |
| Msa0554860 | Msa1006840 | 0.801959 | 7.038641e-49 | -8.615850e-47 |
| Msa0554860 | Msa1055410 | 0.815788 | 7.726990e-52 | -8.615850e-47 |
| Msa0554860 | Msa1093330 | 0.814871 | 1.235452e-51 | -8.615850e-47 |
| Msa0554860 | Msa1104140 | 0.808799 | 2.593615e-50 | -8.615850e-47 |
| Msa0554860 | Msa1135890 | 0.818073 | 2.370371e-52 | -8.615850e-47 |
| Msa0554860 | Msa1166870 | 0.802963 | 4.370679e-49 | -8.615850e-47 |
| Msa0554860 | Msa1179950 | 0.802553 | 5.311326e-49 | -8.615850e-47 |
| Msa0554860 | Msa1179980 | 0.803522 | 3.348243e-49 | -8.615850e-47 |
| Msa0554860 | Msa1237940 | 0.804510 | 2.086363e-49 | -8.615850e-47 |
| Msa0554860 | Msa1265630 | 0.816049 | 6.755070e-52 | -8.615850e-47 |
| Msa0554860 | Msa1270620 | 0.807790 | 4.255684e-50 | -8.615850e-47 |
| Msa0554860 | Msa1270690 | 0.803611 | 3.209627e-49 | -8.615850e-47 |
| Msa0554860 | Msa1331710 | 0.806858 | 6.708040e-50 | -8.615850e-47 |
| Msa0554860 | Msa1394290 | 0.810583 | 1.072618e-50 | -8.615850e-47 |
| Msa0554860 | Msa1444310 | 0.802517 | 5.403545e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554860 | MtrunA17_Chr0c02g0489661 | 95.816 | 239 | 6 | 1 | 1 | 239 | 1 | 235 | 5.14e-167 | 460 |
| Msa0554860 | MtrunA17_Chr2g0308541 | 38.723 | 235 | 135 | 5 | 6 | 235 | 9 | 239 | 6.72e-50 | 163 |
| Msa0554860 | MtrunA17_Chr8g0371571 | 38.627 | 233 | 130 | 5 | 4 | 232 | 2 | 225 | 9.18e-50 | 163 |
| Msa0554860 | MtrunA17_Chr7g0243311 | 36.134 | 238 | 141 | 5 | 5 | 235 | 4 | 237 | 1.17e-45 | 152 |
| Msa0554860 | MtrunA17_Chr2g0283841 | 37.229 | 231 | 136 | 4 | 4 | 232 | 2 | 225 | 2.82e-44 | 149 |
| Msa0554860 | MtrunA17_Chr8g0360781 | 37.447 | 235 | 138 | 5 | 6 | 235 | 9 | 239 | 3.22e-44 | 149 |
| Msa0554860 | MtrunA17_Chr1g0210811 | 35.043 | 234 | 139 | 4 | 4 | 232 | 6 | 231 | 1.66e-43 | 147 |
| Msa0554860 | MtrunA17_Chr5g0401801 | 40.415 | 193 | 109 | 3 | 5 | 195 | 4 | 192 | 1.74e-43 | 146 |
| Msa0554860 | MtrunA17_Chr1g0155371 | 33.624 | 229 | 143 | 4 | 1 | 226 | 1 | 223 | 1.81e-37 | 132 |
| Msa0554860 | MtrunA17_Chr6g0459741 | 34.759 | 187 | 118 | 1 | 6 | 192 | 8 | 190 | 1.71e-35 | 126 |
| Msa0554860 | MtrunA17_Chr4g0004521 | 29.864 | 221 | 132 | 6 | 20 | 226 | 7 | 218 | 1.77e-23 | 95.5 |
| Msa0554860 | MtrunA17_Chr6g0453891 | 29.016 | 193 | 121 | 6 | 32 | 218 | 136 | 318 | 8.31e-14 | 69.7 |
| Msa0554860 | MtrunA17_Chr3g0142511 | 32.692 | 104 | 67 | 2 | 126 | 226 | 30 | 133 | 2.72e-13 | 66.2 |
| Msa0554860 | MtrunA17_Chr4g0027841 | 26.160 | 237 | 159 | 8 | 9 | 238 | 91 | 318 | 1.34e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554860 | AT1G16470.1 | 90.377 | 239 | 19 | 1 | 1 | 239 | 1 | 235 | 1.59e-157 | 436 |
| Msa0554860 | AT1G16470.2 | 90.377 | 239 | 19 | 1 | 1 | 239 | 1 | 235 | 1.59e-157 | 436 |
| Msa0554860 | AT1G79210.1 | 89.540 | 239 | 21 | 1 | 1 | 239 | 1 | 235 | 1.92e-156 | 434 |
| Msa0554860 | AT1G79210.2 | 89.540 | 239 | 21 | 1 | 1 | 239 | 1 | 235 | 1.92e-156 | 434 |
| Msa0554860 | AT1G79210.3 | 89.540 | 239 | 21 | 1 | 1 | 239 | 1 | 235 | 1.92e-156 | 434 |
| Msa0554860 | AT5G66140.1 | 39.316 | 234 | 128 | 6 | 4 | 232 | 2 | 226 | 1.48e-48 | 160 |
| Msa0554860 | AT3G51260.1 | 38.889 | 234 | 129 | 6 | 4 | 232 | 2 | 226 | 3.49e-47 | 157 |
| Msa0554860 | AT3G51260.2 | 39.908 | 218 | 118 | 5 | 4 | 217 | 2 | 210 | 5.98e-47 | 156 |
| Msa0554860 | AT5G35590.1 | 36.170 | 235 | 141 | 5 | 6 | 235 | 9 | 239 | 4.45e-44 | 149 |
| Msa0554860 | AT1G53850.1 | 35.043 | 234 | 139 | 4 | 4 | 232 | 6 | 231 | 2.14e-43 | 147 |
| Msa0554860 | AT1G53850.2 | 35.043 | 234 | 139 | 4 | 4 | 232 | 6 | 231 | 2.14e-43 | 147 |
| Msa0554860 | AT3G14290.1 | 35.043 | 234 | 139 | 4 | 4 | 232 | 6 | 231 | 4.36e-43 | 146 |
| Msa0554860 | AT3G22110.1 | 35.193 | 233 | 137 | 5 | 5 | 234 | 4 | 225 | 1.21e-42 | 145 |
| Msa0554860 | AT2G05840.1 | 34.894 | 235 | 144 | 5 | 6 | 235 | 9 | 239 | 3.13e-41 | 141 |
| Msa0554860 | AT5G42790.1 | 36.245 | 229 | 137 | 5 | 1 | 226 | 1 | 223 | 2.16e-39 | 137 |
| Msa0554860 | AT1G47250.1 | 34.615 | 234 | 144 | 5 | 1 | 231 | 1 | 228 | 1.13e-37 | 133 |
| Msa0554860 | AT2G05840.2 | 33.803 | 213 | 133 | 4 | 6 | 214 | 9 | 217 | 3.19e-35 | 125 |
| Msa0554860 | AT2G27020.1 | 31.193 | 218 | 145 | 2 | 6 | 222 | 8 | 221 | 2.41e-32 | 118 |
| Msa0554860 | AT2G05840.3 | 34.615 | 182 | 113 | 3 | 6 | 185 | 9 | 186 | 7.37e-32 | 116 |
| Msa0554860 | AT2G27020.2 | 31.193 | 218 | 145 | 2 | 6 | 222 | 110 | 323 | 3.40e-31 | 118 |
| Msa0554860 | AT4G15165.1 | 26.609 | 233 | 115 | 5 | 5 | 234 | 4 | 183 | 3.67e-21 | 88.2 |
Find 91 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCCTTTGAATGTTTC+TGG | 0.107581 | 4_1:-52598323 | Msa0554860:five_prime_UTR |
| GAGAACGATTGCAAAGATTT+TGG | 0.152013 | 4_1:+52598246 | None:intergenic |
| AGCTGAAATTGATGATTATT+TGG | 0.158426 | 4_1:-52592560 | Msa0554860:CDS |
| AATAAATTAGTGTTCATTAA+AGG | 0.239694 | 4_1:+52592294 | None:intergenic |
| GGAGTGTCTCTGCTTGTTGC+TGG | 0.248519 | 4_1:-52595151 | Msa0554860:CDS |
| CTTATTTATTTGCGATGAAT+TGG | 0.258291 | 4_1:-52592240 | Msa0554860:three_prime_UTR |
| GCTTTAACCGCTGTTGGTTC+TGG | 0.270331 | 4_1:-52597596 | Msa0554860:CDS |
| TTTGTTTCTCTTTCCAGTTC+AGG | 0.288932 | 4_1:-52598359 | Msa0554860:five_prime_UTR |
| GAATTGGGGATCTTAAATTA+AGG | 0.298804 | 4_1:-52592224 | Msa0554860:three_prime_UTR |
| CTGTATACAACACCTATATT+TGG | 0.326037 | 4_1:+52597366 | None:intergenic |
| ATGCAGGAATTTACTCAGTC+TGG | 0.330425 | 4_1:-52595961 | Msa0554860:CDS |
| AGGTGCAATCGGATAATAAA+AGG | 0.343590 | 4_1:+52592266 | None:intergenic |
| TTCTAGGTACACCGATGATA+TGG | 0.345310 | 4_1:-52594491 | Msa0554860:intron |
| GTTGCTGGGTTTGATGATAA+TGG | 0.347033 | 4_1:-52595136 | Msa0554860:CDS |
| GCTTCATCAACCAATATAGA+TGG | 0.347807 | 4_1:+52597512 | None:intergenic |
| TTATTTATTTGCGATGAATT+GGG | 0.353079 | 4_1:-52592239 | Msa0554860:three_prime_UTR |
| GTCTTTGTTGTTCAGTGGCA+TGG | 0.357696 | 4_1:-52596474 | Msa0554860:intron |
| CGAACCAATACTCGGAAATC+AGG | 0.360536 | 4_1:+52596449 | None:intergenic |
| ACAAGATGCTAAGATAATTC+AGG | 0.365742 | 4_1:+52592198 | None:intergenic |
| GAAGAAACTCCCATCTATAT+TGG | 0.368608 | 4_1:-52597522 | Msa0554860:CDS |
| AACATTGAAATCGGCATCAT+TGG | 0.369450 | 4_1:-52593858 | Msa0554860:CDS |
| CAAATATAGGTGTTGTATAC+AGG | 0.377485 | 4_1:-52597365 | Msa0554860:intron |
| TGCTTCGAGAGGAACTGTTT+TGG | 0.381376 | 4_1:+52598190 | None:intergenic |
| GATAGTGGTGTCCGGCCATT+TGG | 0.384275 | 4_1:-52595172 | Msa0554860:intron |
| GCTGAAATTGATGATTATTT+GGG | 0.402207 | 4_1:-52592559 | Msa0554860:CDS |
| TGACAATGAAGGAAGGGTTC+AGG | 0.403066 | 4_1:+52598222 | None:intergenic |
| ATTTCAACACCGAACGAATA+CGG | 0.405644 | 4_1:-52598402 | Msa0554860:five_prime_UTR |
| ATGAAATAAACACCAACTTC+GGG | 0.412111 | 4_1:+52592494 | None:intergenic |
| TAATGGACCACAATTATATC+AGG | 0.419454 | 4_1:-52595119 | Msa0554860:intron |
| GTGGGAGAACTCACCTGAAC+TGG | 0.422188 | 4_1:+52598346 | None:intergenic |
| TATATAATCAAATCAAATCA+TGG | 0.431364 | 4_1:-52597687 | Msa0554860:exon |
| TATGGTAATTCTGATGACTT+TGG | 0.433271 | 4_1:+52592380 | None:intergenic |
| CTCGGTATCAAAGCTGCAAA+TGG | 0.434339 | 4_1:-52597563 | Msa0554860:CDS |
| GAGTGTCTCTGCTTGTTGCT+GGG | 0.436297 | 4_1:-52595150 | Msa0554860:CDS |
| GGAAGAGGAGATGACAATGA+AGG | 0.436563 | 4_1:+52598211 | None:intergenic |
| TTGCTGTAGGTGGATCCATC+AGG | 0.438333 | 4_1:-52594797 | Msa0554860:intron |
| TCCCTGTCACTCAACTTGTA+AGG | 0.441365 | 4_1:-52595999 | Msa0554860:CDS |
| ACACCAACTTCGGGAACATA+AGG | 0.445040 | 4_1:+52592503 | None:intergenic |
| GGGTCCTGATTTCCGAGTAT+TGG | 0.446397 | 4_1:-52596453 | Msa0554860:CDS |
| CAGTTATTAACACCAAATAT+AGG | 0.451124 | 4_1:-52597378 | Msa0554860:CDS |
| TAAATAAGATAAGGTGCAAT+CGG | 0.451592 | 4_1:+52592255 | None:intergenic |
| TCTTGGAAAGCTTCTGCTAT+GGG | 0.454997 | 4_1:-52594764 | Msa0554860:CDS |
| CATCCTTATGTTCCCGAAGT+TGG | 0.459206 | 4_1:-52592506 | Msa0554860:three_prime_UTR |
| ACAAGTTGAGTGACAGGGAT+TGG | 0.462122 | 4_1:+52596003 | None:intergenic |
| CTGTTGGTTCCGTATTCGTT+CGG | 0.465066 | 4_1:+52598393 | None:intergenic |
| GGAAGTTGCTGCCGTTATGC+AGG | 0.465077 | 4_1:-52595977 | Msa0554860:CDS |
| TATGAAATAAACACCAACTT+CGG | 0.469621 | 4_1:+52592493 | None:intergenic |
| TCTTTGTTGTTCAGTGGCAT+GGG | 0.469804 | 4_1:-52596473 | Msa0554860:intron |
| TTCTTGGAAAGCTTCTGCTA+TGG | 0.473689 | 4_1:-52594765 | Msa0554860:CDS |
| TCCCTTACAAGTTGAGTGAC+AGG | 0.479106 | 4_1:+52595997 | None:intergenic |
| CATCGCAAATAAATAAGATA+AGG | 0.497739 | 4_1:+52592246 | None:intergenic |
| AGTTTAATTGAATTTCAAGA+TGG | 0.499567 | 4_1:-52592466 | Msa0554860:three_prime_UTR |
| TTTGTCCTGATAGTGGTGTC+CGG | 0.504083 | 4_1:-52595180 | Msa0554860:intron |
| AAACATTCAAAGGAAATTAG+TGG | 0.504154 | 4_1:+52598327 | None:intergenic |
| GAGCATGCTTTAACCGCTGT+TGG | 0.504625 | 4_1:-52597602 | Msa0554860:CDS |
| CTAAGACATTTCTTGAGAAG+AGG | 0.508140 | 4_1:-52594724 | Msa0554860:intron |
| GAGGAGATGACAATGAAGGA+AGG | 0.513758 | 4_1:+52598215 | None:intergenic |
| TGCAGGAATTTACTCAGTCT+GGG | 0.516768 | 4_1:-52595960 | Msa0554860:intron |
| GGTTCTGGACAAACTTCTCT+CGG | 0.526164 | 4_1:-52597581 | Msa0554860:CDS |
| ACAAAATTCGACTGTACTGT+TGG | 0.526583 | 4_1:+52598377 | None:intergenic |
| TATTTATTTGCGATGAATTG+GGG | 0.527893 | 4_1:-52592238 | Msa0554860:three_prime_UTR |
| GTTTAATTGAATTTCAAGAT+GGG | 0.536767 | 4_1:-52592465 | Msa0554860:three_prime_UTR |
| AAATAATCATCAATTTCAGC+TGG | 0.537679 | 4_1:+52592562 | None:intergenic |
| AACAAGTATACAAACATGAG+TGG | 0.539734 | 4_1:+52598438 | None:intergenic |
| CCCTGTCACTCAACTTGTAA+GGG | 0.541679 | 4_1:-52595998 | Msa0554860:CDS |
| CTGAGTAAATTCCTGCATAA+CGG | 0.544918 | 4_1:+52595966 | None:intergenic |
| CCCTTACAAGTTGAGTGACA+GGG | 0.551681 | 4_1:+52595998 | None:intergenic |
| CTTCATCAACCAATATAGAT+GGG | 0.557361 | 4_1:+52597513 | None:intergenic |
| AACATTCAAAGGAAATTAGT+GGG | 0.561627 | 4_1:+52598328 | None:intergenic |
| TTAAATGTATGATATGTGAA+TGG | 0.573767 | 4_1:-52592317 | Msa0554860:intron |
| ACAAGCAGAGACACTCCAAA+TGG | 0.574302 | 4_1:+52595157 | None:intergenic |
| ATATAATCAAATCAAATCAT+GGG | 0.575451 | 4_1:-52597686 | Msa0554860:exon |
| GCAATATTGACACTCAAGGA+AGG | 0.576853 | 4_1:-52594445 | Msa0554860:CDS |
| GCAGAGACACTCCAAATGGC+CGG | 0.585825 | 4_1:+52595161 | None:intergenic |
| TTTGTGTCAAAGCAATACCT+GGG | 0.591200 | 4_1:-52598493 | None:intergenic |
| TGCCATACCTGATATAATTG+TGG | 0.592498 | 4_1:+52595112 | None:intergenic |
| CAACTTCGGGAACATAAGGA+TGG | 0.599592 | 4_1:+52592507 | None:intergenic |
| GGTGTTGAAATAGAAAGTGT+AGG | 0.599628 | 4_1:+52598414 | None:intergenic |
| ATCATCAAGCTCCATATCAT+CGG | 0.601420 | 4_1:+52594480 | None:intergenic |
| TGTTTCAAAATTGCTTCGAG+AGG | 0.603777 | 4_1:+52598179 | None:intergenic |
| ATTTGAACAAGCTTGCCAGA+AGG | 0.604598 | 4_1:+52597626 | None:intergenic |
| CACAGCAATATTGACACTCA+AGG | 0.611442 | 4_1:-52594449 | Msa0554860:CDS |
| ATGAAGACTTGTGATGGCAC+TGG | 0.611959 | 4_1:-52592435 | Msa0554860:three_prime_UTR |
| AGGAGATGACAATGAAGGAA+GGG | 0.616055 | 4_1:+52598216 | None:intergenic |
| ACAAGTATACAAACATGAGT+GGG | 0.620557 | 4_1:+52598439 | None:intergenic |
| CAATATTGACACTCAAGGAA+GGG | 0.636489 | 4_1:-52594444 | Msa0554860:intron |
| TGATCAATGAAGACTTGTGA+TGG | 0.639717 | 4_1:-52592441 | Msa0554860:three_prime_UTR |
| CTTGGAAAGCTTCTGCTATG+GGG | 0.641428 | 4_1:-52594763 | Msa0554860:CDS |
| GTGTAACCAGAAACATTCAA+AGG | 0.655198 | 4_1:+52598317 | None:intergenic |
| TGAGTGTCAATATTGCTGTG+TGG | 0.689041 | 4_1:+52594452 | None:intergenic |
| AGTTTGTCCAGAACCAACAG+CGG | 0.695714 | 4_1:+52597589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATTTTTTGTGTA+TGG | - | chr4_1:52592668-52592687 | Msa0554860:intron | 10.0% |
| !!! | TAATTTTATTTTTTGTGTAT+GGG | - | chr4_1:52592669-52592688 | Msa0554860:intron | 10.0% |
| !!! | CTAAAATTTTATGTTAATTT+GGG | - | chr4_1:52592854-52592873 | Msa0554860:intron | 10.0% |
| !!! | TATGCAATATATATTTTTAA+TGG | - | chr4_1:52597830-52597849 | Msa0554860:intron | 10.0% |
| !!! | TTTTATTTATGCTTTCAATT+TGG | - | chr4_1:52592605-52592624 | Msa0554860:intron | 15.0% |
| !! | TTGAGAAAATTTATATGAAA+AGG | - | chr4_1:52592813-52592832 | Msa0554860:intron | 15.0% |
| !! | TGAGAAAATTTATATGAAAA+GGG | - | chr4_1:52592814-52592833 | Msa0554860:intron | 15.0% |
| !!! | GCTAAAATTTTATGTTAATT+TGG | - | chr4_1:52592853-52592872 | Msa0554860:intron | 15.0% |
| !!! | TTATTTTATTTTTCTTGACT+AGG | - | chr4_1:52592927-52592946 | Msa0554860:intron | 15.0% |
| !!! | TATTTTATTTTTCTTGACTA+GGG | - | chr4_1:52592928-52592947 | Msa0554860:intron | 15.0% |
| !!! | GTTTTTTATTGTGATTTTAT+AGG | - | chr4_1:52592980-52592999 | Msa0554860:intron | 15.0% |
| !! | TATATAATCAAATCAAATCA+TGG | - | chr4_1:52593003-52593022 | Msa0554860:intron | 15.0% |
| !! | ATATAATCAAATCAAATCAT+GGG | - | chr4_1:52593004-52593023 | Msa0554860:intron | 15.0% |
| !! | CTTATTAAAGAATTAATAGA+AGG | - | chr4_1:52593781-52593800 | Msa0554860:intron | 15.0% |
| !! | AAGTAATTTATAAATGTACT+TGG | - | chr4_1:52593875-52593894 | Msa0554860:CDS | 15.0% |
| !! | TATATTGTTTAAATGTTACT+TGG | - | chr4_1:52594377-52594396 | Msa0554860:intron | 15.0% |
| !! | TAAAATTGAAAAGTTAATGA+AGG | + | chr4_1:52595481-52595500 | None:intergenic | 15.0% |
| !!! | GAAATATGATATTTTCATTA+AGG | + | chr4_1:52596308-52596327 | None:intergenic | 15.0% |
| !!! | TCCCTTTTATTTTATTTTTT+CGG | - | chr4_1:52596774-52596793 | Msa0554860:intron | 15.0% |
| !! | ACCGAAAAAATAAAATAAAA+GGG | + | chr4_1:52596778-52596797 | None:intergenic | 15.0% |
| !! | AAATAAATAAACACTGAAAA+GGG | + | chr4_1:52596935-52596954 | None:intergenic | 15.0% |
| !!! | TAATTTGTTAATTATATTGC+AGG | - | chr4_1:52598096-52598115 | Msa0554860:intron | 15.0% |
| !!! | AATTTGTTAATTATATTGCA+GGG | - | chr4_1:52598097-52598116 | Msa0554860:intron | 15.0% |
| !! | AATAAATTAGTGTTCATTAA+AGG | + | chr4_1:52598399-52598418 | None:intergenic | 15.0% |
| !!! | GGGAATTAAGTTTTATTTAA+GGG | + | chr4_1:52592417-52592436 | None:intergenic | 20.0% |
| !!! | TGGGAATTAAGTTTTATTTA+AGG | + | chr4_1:52592418-52592437 | None:intergenic | 20.0% |
| !! | TAAGTTCAAACATATTTGTA+TGG | - | chr4_1:52593372-52593391 | Msa0554860:intron | 20.0% |
| !! | TGATACTTGAAAACAATTTA+AGG | + | chr4_1:52594175-52594194 | None:intergenic | 20.0% |
| !! | AAGAATTTCGCAATATAAAA+TGG | + | chr4_1:52594318-52594337 | None:intergenic | 20.0% |
| !!! | CATCTTTTGTTAAAAATAAC+AGG | - | chr4_1:52594631-52594650 | Msa0554860:intron | 20.0% |
| !! | AAAAAAAAAAAAAAGGACAC+AGG | + | chr4_1:52594986-52595005 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGTGAAGACAAT+AGG | + | chr4_1:52595093-52595112 | None:intergenic | 20.0% |
| !! | TAGCTAAATTAAATGTTTAG+TGG | - | chr4_1:52595162-52595181 | Msa0554860:CDS | 20.0% |
| !!! | TTGCACTTAGAATTTTTTAA+AGG | - | chr4_1:52595810-52595829 | Msa0554860:intron | 20.0% |
| !!! | ATTAATGATGACAATGTTTT+AGG | - | chr4_1:52596000-52596019 | Msa0554860:CDS | 20.0% |
| !!! | CAATTTAAAACACTGAATTA+AGG | + | chr4_1:52596439-52596458 | None:intergenic | 20.0% |
| !!! | CTTAATTCAGTGTTTTAAAT+TGG | - | chr4_1:52596437-52596456 | Msa0554860:CDS | 20.0% |
| !! | CACCGAAAAAATAAAATAAA+AGG | + | chr4_1:52596779-52596798 | None:intergenic | 20.0% |
| !! | CAAATAAATAAACACTGAAA+AGG | + | chr4_1:52596936-52596955 | None:intergenic | 20.0% |
| !!! | CAAACTTATTTATAGCTTTT+AGG | + | chr4_1:52597034-52597053 | None:intergenic | 20.0% |
| !! | AAAAGCTATAAATAAGTTTG+AGG | - | chr4_1:52597034-52597053 | Msa0554860:intron | 20.0% |
| !!! | GCAATATATATTTTTAATGG+AGG | - | chr4_1:52597833-52597852 | Msa0554860:intron | 20.0% |
| !!! | TTTCTTTTCTTAATTTTTGC+TGG | - | chr4_1:52598002-52598021 | Msa0554860:intron | 20.0% |
| !! | AGTTTAATTGAATTTCAAGA+TGG | - | chr4_1:52598224-52598243 | Msa0554860:five_prime_UTR | 20.0% |
| !! | GTTTAATTGAATTTCAAGAT+GGG | - | chr4_1:52598225-52598244 | Msa0554860:five_prime_UTR | 20.0% |
| !! | TTAAATGTATGATATGTGAA+TGG | - | chr4_1:52598373-52598392 | Msa0554860:five_prime_UTR | 20.0% |
| !! | TTATTTATTTGCGATGAATT+GGG | - | chr4_1:52598451-52598470 | Msa0554860:five_prime_UTR | 20.0% |
| ! | AACATTCAAAGGAAATTAGT+GGG | + | chr4_1:52592365-52592384 | None:intergenic | 25.0% |
| ! | AAACATTCAAAGGAAATTAG+TGG | + | chr4_1:52592366-52592385 | None:intergenic | 25.0% |
| ! | TAATTTCCTTTGAATGTTTC+TGG | - | chr4_1:52592367-52592386 | Msa0554860:three_prime_UTR | 25.0% |
| ! | AAAACACAAATTTCTAACCT+TGG | + | chr4_1:52592538-52592557 | None:intergenic | 25.0% |
| !! | GATTACATTTCTCTTTTGAA+AGG | - | chr4_1:52592736-52592755 | Msa0554860:intron | 25.0% |
| !!! | TCTTTTTCAAAATGTGAACT+TGG | + | chr4_1:52592899-52592918 | None:intergenic | 25.0% |
| ! | TCAAAATCTTGAGAAATTGA+TGG | + | chr4_1:52593230-52593249 | None:intergenic | 25.0% |
| ! | CAGTTATTAACACCAAATAT+AGG | - | chr4_1:52593312-52593331 | Msa0554860:intron | 25.0% |
| ! | ACAGTTATGATGTTATCATA+GGG | + | chr4_1:52593656-52593675 | None:intergenic | 25.0% |
| ! | AACAGTTATGATGTTATCAT+AGG | + | chr4_1:52593657-52593676 | None:intergenic | 25.0% |
| !!! | GCAAAACAATCTTCTTTTTT+GGG | + | chr4_1:52594062-52594081 | None:intergenic | 25.0% |
| !!! | AGCAAAACAATCTTCTTTTT+TGG | + | chr4_1:52594063-52594082 | None:intergenic | 25.0% |
| ! | AATATTTGGTCAATATGACT+CGG | - | chr4_1:52594353-52594372 | Msa0554860:intron | 25.0% |
| ! | AGAGAAAAAAAAATGCTCTA+AGG | + | chr4_1:52594560-52594579 | None:intergenic | 25.0% |
| ! | ATACCAAATGATAACAGAAA+AGG | + | chr4_1:52594602-52594621 | None:intergenic | 25.0% |
| ! | TATTGTAAGCAAAAAATTGC+AGG | - | chr4_1:52594662-52594681 | Msa0554860:intron | 25.0% |
| ! | ACATATATGGTAAAGTTCAA+CGG | + | chr4_1:52594833-52594852 | None:intergenic | 25.0% |
| ! | ATAAGCTATGAGTACATATA+TGG | + | chr4_1:52594846-52594865 | None:intergenic | 25.0% |
| ! | ATTTACCAAAAACTCAAAGT+TGG | + | chr4_1:52594946-52594965 | None:intergenic | 25.0% |
| !!! | TGTTGAATCTTTTTTAGTGA+GGG | + | chr4_1:52595034-52595053 | None:intergenic | 25.0% |
| ! | TCAACATTTAATGATAATCG+GGG | + | chr4_1:52595204-52595223 | None:intergenic | 25.0% |
| ! | CTCAACATTTAATGATAATC+GGG | + | chr4_1:52595205-52595224 | None:intergenic | 25.0% |
| ! | CCTCAACATTTAATGATAAT+CGG | + | chr4_1:52595206-52595225 | None:intergenic | 25.0% |
| ! | CGATTATCATTAAATGTTGA+GGG | - | chr4_1:52595204-52595223 | Msa0554860:intron | 25.0% |
| ! | ATAAACATTGTGTTTCCTAT+TGG | - | chr4_1:52595353-52595372 | Msa0554860:intron | 25.0% |
| ! | AATTGAAAAGTTAATGAAGG+AGG | + | chr4_1:52595478-52595497 | None:intergenic | 25.0% |
| !!! | ATTTATTTTTGTCCTGATAG+TGG | - | chr4_1:52595503-52595522 | Msa0554860:intron | 25.0% |
| !!! | AGAAAATTGAAGGTTGTTTT+TGG | - | chr4_1:52595858-52595877 | Msa0554860:intron | 25.0% |
| ! | ATGAATTGATAGAGATATTG+AGG | + | chr4_1:52596157-52596176 | None:intergenic | 25.0% |
| !! | TTTCATTCTTAGAGTTGATT+AGG | - | chr4_1:52596324-52596343 | Msa0554860:intron | 25.0% |
| ! | GGTTCAAATGAAAAAAATAG+AGG | - | chr4_1:52596491-52596510 | Msa0554860:intron | 25.0% |
| !! | CAGCTTATGATAATTTTAGA+GGG | + | chr4_1:52596583-52596602 | None:intergenic | 25.0% |
| !! | TCAGCTTATGATAATTTTAG+AGG | + | chr4_1:52596584-52596603 | None:intergenic | 25.0% |
| ! | ACATAAAAACTGTCAATGAA+GGG | + | chr4_1:52596682-52596701 | None:intergenic | 25.0% |
| ! | AACATAAAAACTGTCAATGA+AGG | + | chr4_1:52596683-52596702 | None:intergenic | 25.0% |
| ! | TCAGCAAAAAACATTGAAAT+CGG | - | chr4_1:52596823-52596842 | Msa0554860:intron | 25.0% |
| ! | TTGTTCCCTAAAATATACTT+TGG | - | chr4_1:52596883-52596902 | Msa0554860:intron | 25.0% |
| ! | TGAGCTAAAAATTATGCTAT+CGG | - | chr4_1:52596992-52597011 | Msa0554860:intron | 25.0% |
| !! | ATAAATAAGTTTGAGGCATT+CGG | - | chr4_1:52597041-52597060 | Msa0554860:intron | 25.0% |
| ! | TCTAAACTATAAAACAAACC+AGG | + | chr4_1:52597716-52597735 | None:intergenic | 25.0% |
| !!! | ATGTCATTGATTTCAAAACA+TGG | + | chr4_1:52597789-52597808 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTACCAATGCAAA+TGG | - | chr4_1:52597947-52597966 | Msa0554860:intron | 25.0% |
| !! | TTTTCTTAATTTTTGCTGGT+GGG | - | chr4_1:52598006-52598025 | Msa0554860:intron | 25.0% |
| ! | AAATAATCATCAATTTCAGC+TGG | + | chr4_1:52598131-52598150 | None:intergenic | 25.0% |
| !! | AGCTGAAATTGATGATTATT+TGG | - | chr4_1:52598130-52598149 | Msa0554860:intron | 25.0% |
| !! | GCTGAAATTGATGATTATTT+GGG | - | chr4_1:52598131-52598150 | Msa0554860:intron | 25.0% |
| ! | TATGAAATAAACACCAACTT+CGG | + | chr4_1:52598200-52598219 | None:intergenic | 25.0% |
| ! | TATCATACATTTAAACAAGC+CGG | + | chr4_1:52598367-52598386 | None:intergenic | 25.0% |
| ! | TAAATAAGATAAGGTGCAAT+CGG | + | chr4_1:52598438-52598457 | None:intergenic | 25.0% |
| ! | CATCGCAAATAAATAAGATA+AGG | + | chr4_1:52598447-52598466 | None:intergenic | 25.0% |
| ! | CTTATTTATTTGCGATGAAT+TGG | - | chr4_1:52598450-52598469 | Msa0554860:five_prime_UTR | 25.0% |
| ! | TATTTATTTGCGATGAATTG+GGG | - | chr4_1:52598452-52598471 | Msa0554860:five_prime_UTR | 25.0% |
| !! | GATTTTAGTATTTCTTACCC+AGG | + | chr4_1:52592217-52592236 | None:intergenic | 30.0% |
| ACAAGTATACAAACATGAGT+GGG | + | chr4_1:52592254-52592273 | None:intergenic | 30.0% | |
| AACAAGTATACAAACATGAG+TGG | + | chr4_1:52592255-52592274 | None:intergenic | 30.0% | |
| !! | AGGGTGTTTTTGTCATTTAT+GGG | + | chr4_1:52592398-52592417 | None:intergenic | 30.0% |
| !!! | AAGGGTGTTTTTGTCATTTA+TGG | + | chr4_1:52592399-52592418 | None:intergenic | 30.0% |
| ! | AGAACGATTGCAAAGATTTT+GGG | + | chr4_1:52592446-52592465 | None:intergenic | 30.0% |
| !!! | AAGCAATTTTGAAACAACCA+AGG | - | chr4_1:52592518-52592537 | Msa0554860:three_prime_UTR | 30.0% |
| ! | ATGTTTCTGCAATTCAGATT+AGG | - | chr4_1:52592633-52592652 | Msa0554860:intron | 30.0% |
| ! | AATTGATGATCATGCTGAAT+TGG | + | chr4_1:52592714-52592733 | None:intergenic | 30.0% |
| TATATGAAAAGGGCAAATGT+TGG | - | chr4_1:52592824-52592843 | Msa0554860:intron | 30.0% | |
| TGAACTTGGAATTGTAATTC+TGG | + | chr4_1:52592885-52592904 | None:intergenic | 30.0% | |
| !! | TTATTTTTCTTGACTAGGGT+TGG | - | chr4_1:52592932-52592951 | Msa0554860:intron | 30.0% |
| CTTCATCAACCAATATAGAT+GGG | + | chr4_1:52593180-52593199 | None:intergenic | 30.0% | |
| ! | CTCTTTTGTCATATGATTTC+AGG | - | chr4_1:52593278-52593297 | Msa0554860:intron | 30.0% |
| CTGTATACAACACCTATATT+TGG | + | chr4_1:52593327-52593346 | None:intergenic | 30.0% | |
| ! | CAAATATAGGTGTTGTATAC+AGG | - | chr4_1:52593325-52593344 | Msa0554860:intron | 30.0% |
| ! | ACTATTATTTCTCTGTACAG+AGG | - | chr4_1:52593396-52593415 | Msa0554860:intron | 30.0% |
| TAACAGAGAATTCTATCCAA+AGG | - | chr4_1:52593564-52593583 | Msa0554860:intron | 30.0% | |
| CATTCATCAAGTACTTATGA+TGG | + | chr4_1:52593612-52593631 | None:intergenic | 30.0% | |
| CAGTTATGATGTTATCATAG+GGG | + | chr4_1:52593655-52593674 | None:intergenic | 30.0% | |
| TCATAACTGTTTCCTAGATA+TGG | - | chr4_1:52593666-52593685 | Msa0554860:intron | 30.0% | |
| ACATTGTAAACTGTTAGCAT+TGG | - | chr4_1:52593825-52593844 | Msa0554860:intron | 30.0% | |
| ! | AGCATTGGAATAGTGTAAAA+TGG | - | chr4_1:52593840-52593859 | Msa0554860:CDS | 30.0% |
| GTCATACACTAAAAGTTCAA+CGG | + | chr4_1:52594139-52594158 | None:intergenic | 30.0% | |
| !!! | ATTTTGTCTTTGTTGTTCAG+TGG | - | chr4_1:52594211-52594230 | Msa0554860:intron | 30.0% |
| GGTAGTGTACTTTATATAGT+CGG | + | chr4_1:52594297-52594316 | None:intergenic | 30.0% | |
| GAGTCATATTGACCAAATAT+TGG | + | chr4_1:52594354-52594373 | None:intergenic | 30.0% | |
| ! | TTGCCTTTTCTGTTATCATT+TGG | - | chr4_1:52594596-52594615 | Msa0554860:intron | 30.0% |
| !!! | TCTATCTTTCCTTTTTTTGG+AGG | + | chr4_1:52594888-52594907 | None:intergenic | 30.0% |
| !!! | CTCTCTATCTTTCCTTTTTT+TGG | + | chr4_1:52594891-52594910 | None:intergenic | 30.0% |
| AAAAAAAAAAAGGACACAGG+TGG | + | chr4_1:52594983-52595002 | None:intergenic | 30.0% | |
| !!! | TTGAATCTTTTTTAGTGAGG+GGG | + | chr4_1:52595032-52595051 | None:intergenic | 30.0% |
| !!! | GTTGAATCTTTTTTAGTGAG+GGG | + | chr4_1:52595033-52595052 | None:intergenic | 30.0% |
| !!! | CTGTTGAATCTTTTTTAGTG+AGG | + | chr4_1:52595035-52595054 | None:intergenic | 30.0% |
| ACAATAGGTTTCATGTTGAT+TGG | + | chr4_1:52595078-52595097 | None:intergenic | 30.0% | |
| ATTGTGAAACTTTCCAAATC+TGG | - | chr4_1:52595125-52595144 | Msa0554860:CDS | 30.0% | |
| CCGATTATCATTAAATGTTG+AGG | - | chr4_1:52595203-52595222 | Msa0554860:intron | 30.0% | |
| GGTTCATTATGAATTCCAAT+AGG | + | chr4_1:52595371-52595390 | None:intergenic | 30.0% | |
| TGCGTGTAAAAATAAGTAAG+AGG | + | chr4_1:52595430-52595449 | None:intergenic | 30.0% | |
| AGGAGGAAAATAGAAGAAAA+AGG | + | chr4_1:52595461-52595480 | None:intergenic | 30.0% | |
| ! | TAATGGACCACAATTATATC+AGG | - | chr4_1:52595571-52595590 | Msa0554860:intron | 30.0% |
| CAAGAAAAATATGAACCTGA+TGG | + | chr4_1:52595911-52595930 | None:intergenic | 30.0% | |
| ! | CATCAGGTTCATATTTTTCT+TGG | - | chr4_1:52595909-52595928 | Msa0554860:intron | 30.0% |
| !! | CAATGTTTTAGGCAAATATG+TGG | - | chr4_1:52596011-52596030 | Msa0554860:CDS | 30.0% |
| TAAAGTTTCAACCCACATAA+TGG | + | chr4_1:52596072-52596091 | None:intergenic | 30.0% | |
| !!! | GGAGCAACATTTTGATTAAA+CGG | + | chr4_1:52596392-52596411 | None:intergenic | 30.0% |
| !! | TCAGTGTTTTAAATTGGAGA+AGG | - | chr4_1:52596443-52596462 | Msa0554860:CDS | 30.0% |
| AATAGAGGCTAATGTTATCT+AGG | - | chr4_1:52596506-52596525 | Msa0554860:intron | 30.0% | |
| ATAGAGGCTAATGTTATCTA+GGG | - | chr4_1:52596507-52596526 | Msa0554860:intron | 30.0% | |
| CAGACAAGAAAAAAGAAAAG+AGG | + | chr4_1:52596714-52596733 | None:intergenic | 30.0% | |
| !!! | TTATTTTTTCGGTGTTTTCC+AGG | - | chr4_1:52596785-52596804 | Msa0554860:intron | 30.0% |
| ! | GTCTGCCAAAGTATATTTTA+GGG | + | chr4_1:52596891-52596910 | None:intergenic | 30.0% |
| ! | AGTCTGCCAAAGTATATTTT+AGG | + | chr4_1:52596892-52596911 | None:intergenic | 30.0% |
| TATTTGAACCTTGTATCATC+TGG | - | chr4_1:52596950-52596969 | Msa0554860:intron | 30.0% | |
| !! | TAGCTTTTAGGTATTCAGAT+TGG | + | chr4_1:52597022-52597041 | None:intergenic | 30.0% |
| ! | TAAATAAGTTTGAGGCATTC+GGG | - | chr4_1:52597042-52597061 | Msa0554860:intron | 30.0% |
| TTATCTTCATTTGAGTAGCT+AGG | + | chr4_1:52597094-52597113 | None:intergenic | 30.0% | |
| AGCTACTCAAATGAAGATAA+TGG | - | chr4_1:52597094-52597113 | Msa0554860:intron | 30.0% | |
| !!! | CTTGTTTTACATTCGTATCA+TGG | - | chr4_1:52597120-52597139 | Msa0554860:intron | 30.0% |
| !! | TACTCTATTTTAGACAAACC+TGG | - | chr4_1:52597695-52597714 | Msa0554860:intron | 30.0% |
| TGATGAGAAACAAGAACATT+TGG | + | chr4_1:52597766-52597785 | None:intergenic | 30.0% | |
| AATGGAGGCTAATTAAAATC+AGG | - | chr4_1:52597848-52597867 | Msa0554860:intron | 30.0% | |
| GTTTGTCAAACAATGAAATG+TGG | + | chr4_1:52597882-52597901 | None:intergenic | 30.0% | |
| ! | TGCTACTTACAAAATGCATT+GGG | + | chr4_1:52597980-52597999 | None:intergenic | 30.0% |
| ! | TTGCTACTTACAAAATGCAT+TGG | + | chr4_1:52597981-52598000 | None:intergenic | 30.0% |
| ! | CTTTTCTTAATTTTTGCTGG+TGG | - | chr4_1:52598005-52598024 | Msa0554860:intron | 30.0% |
| ! | TTTCTTAATTTTTGCTGGTG+GGG | - | chr4_1:52598007-52598026 | Msa0554860:intron | 30.0% |
| !!! | AAGTTTTTTGTTTTGAACGC+CGG | - | chr4_1:52598062-52598081 | Msa0554860:intron | 30.0% |
| ACAAATTAAGTTACCGAATC+CGG | + | chr4_1:52598084-52598103 | None:intergenic | 30.0% | |
| ATGAAATAAACACCAACTTC+GGG | + | chr4_1:52598199-52598218 | None:intergenic | 30.0% | |
| TATGGTAATTCTGATGACTT+TGG | + | chr4_1:52598313-52598332 | None:intergenic | 30.0% | |
| ATCATACATTTAAACAAGCC+GGG | + | chr4_1:52598366-52598385 | None:intergenic | 30.0% | |
| GAATTGGGGATCTTAAATTA+AGG | - | chr4_1:52598466-52598485 | Msa0554860:five_prime_UTR | 30.0% | |
| ! | GGTGTTGAAATAGAAAGTGT+AGG | + | chr4_1:52592279-52592298 | None:intergenic | 35.0% |
| ATTTCAACACCGAACGAATA+CGG | - | chr4_1:52592288-52592307 | Msa0554860:three_prime_UTR | 35.0% | |
| ACAAAATTCGACTGTACTGT+TGG | + | chr4_1:52592316-52592335 | None:intergenic | 35.0% | |
| ! | TTTGTTTCTCTTTCCAGTTC+AGG | - | chr4_1:52592331-52592350 | Msa0554860:intron | 35.0% |
| GTGTAACCAGAAACATTCAA+AGG | + | chr4_1:52592376-52592395 | None:intergenic | 35.0% | |
| !! | GCAAAGATTTTGGGTGAATT+GGG | + | chr4_1:52592437-52592456 | None:intergenic | 35.0% |
| !! | TGCAAAGATTTTGGGTGAAT+TGG | + | chr4_1:52592438-52592457 | None:intergenic | 35.0% |
| ! | GAGAACGATTGCAAAGATTT+TGG | + | chr4_1:52592447-52592466 | None:intergenic | 35.0% |
| TGTTTCAAAATTGCTTCGAG+AGG | + | chr4_1:52592514-52592533 | None:intergenic | 35.0% | |
| CTACTACCATCAATTTAGAG+TGG | - | chr4_1:52592783-52592802 | Msa0554860:intron | 35.0% | |
| ! | TACCATCAATTTAGAGTGGA+AGG | - | chr4_1:52592787-52592806 | Msa0554860:intron | 35.0% |
| ! | ACCATCAATTTAGAGTGGAA+GGG | - | chr4_1:52592788-52592807 | Msa0554860:intron | 35.0% |
| ! | CTTACAACTTTTAGTCCTTC+TGG | - | chr4_1:52593049-52593068 | Msa0554860:intron | 35.0% |
| GAAGAAACTCCCATCTATAT+TGG | - | chr4_1:52593168-52593187 | Msa0554860:intron | 35.0% | |
| GCTTCATCAACCAATATAGA+TGG | + | chr4_1:52593181-52593200 | None:intergenic | 35.0% | |
| ! | CTTCATACTTTGGTAGTTGA+TGG | - | chr4_1:52593425-52593444 | Msa0554860:intron | 35.0% |
| ATGCCATTGAAGTTTCTGTT+GGG | - | chr4_1:52593478-52593497 | Msa0554860:intron | 35.0% | |
| ! | TATGATGGTTTGTAAACGCA+AGG | + | chr4_1:52593597-52593616 | None:intergenic | 35.0% |
| GTATAGAGTCGAAATAGATG+TGG | - | chr4_1:52593747-52593766 | Msa0554860:intron | 35.0% | |
| ! | GAACTTTTAGTGTATGACAG+AGG | - | chr4_1:52594141-52594160 | Msa0554860:intron | 35.0% |
| !!! | TGCTTTTTCGAACCAATACT+CGG | + | chr4_1:52594252-52594271 | None:intergenic | 35.0% |
| GAATAGGAAGAACTACATAC+AGG | + | chr4_1:52594410-52594429 | None:intergenic | 35.0% | |
| GCAATCAGAAATGAAGGAAT+AGG | + | chr4_1:52594426-52594445 | None:intergenic | 35.0% | |
| TTCCTTCATTTCTGATTGCT+TGG | - | chr4_1:52594427-52594446 | Msa0554860:intron | 35.0% | |
| TTCCAAGCAATCAGAAATGA+AGG | + | chr4_1:52594432-52594451 | None:intergenic | 35.0% | |
| CTGATTGCTTGGAATGAATT+AGG | - | chr4_1:52594438-52594457 | Msa0554860:intron | 35.0% | |
| ! | ACACATTTCCTTTTCGAACA+TGG | - | chr4_1:52594461-52594480 | Msa0554860:CDS | 35.0% |
| ! | CACATTTCCTTTTCGAACAT+GGG | - | chr4_1:52594462-52594481 | Msa0554860:CDS | 35.0% |
| ATGATAACAGAAAAGGCAAC+AGG | + | chr4_1:52594595-52594614 | None:intergenic | 35.0% | |
| CTGAGTAAATTCCTGCATAA+CGG | + | chr4_1:52594727-52594746 | None:intergenic | 35.0% | |
| ACGGTCAAAACATTTCTGAA+AGG | + | chr4_1:52594814-52594833 | None:intergenic | 35.0% | |
| CGATTAATGTCTACCAGATT+TGG | + | chr4_1:52595141-52595160 | None:intergenic | 35.0% | |
| ! | TAATGATAATCGGGGTGTTA+TGG | + | chr4_1:52595196-52595215 | None:intergenic | 35.0% |
| ! | AACAAAGTGCCTGAAATTTG+AGG | - | chr4_1:52595246-52595265 | Msa0554860:intron | 35.0% |
| TTCGAAATGCCTCAAATTTC+AGG | + | chr4_1:52595258-52595277 | None:intergenic | 35.0% | |
| ! | CATGAGTTAGTTTCATGCAA+CGG | - | chr4_1:52595310-52595329 | Msa0554860:intron | 35.0% |
| TGCATGCAGATTAGATTTAG+AGG | + | chr4_1:52595392-52595411 | None:intergenic | 35.0% | |
| GACCACAATTATATCAGGTA+TGG | - | chr4_1:52595576-52595595 | Msa0554860:intron | 35.0% | |
| TGCCATACCTGATATAATTG+TGG | + | chr4_1:52595581-52595600 | None:intergenic | 35.0% | |
| TCTAGACAGTATTCACTCAT+TGG | - | chr4_1:52595620-52595639 | Msa0554860:intron | 35.0% | |
| TGTGTTTGATGAGTTCATAC+TGG | - | chr4_1:52595775-52595794 | Msa0554860:intron | 35.0% | |
| !! | ACTGCAGTTTTTAGAGAAAG+AGG | - | chr4_1:52595835-52595854 | Msa0554860:intron | 35.0% |
| GAGAAAGAGGAGAAAATTGA+AGG | - | chr4_1:52595848-52595867 | Msa0554860:intron | 35.0% | |
| !! | GTGCAATTTGTATTTGCTGT+AGG | - | chr4_1:52595880-52595899 | Msa0554860:intron | 35.0% |
| !! | CAATTTGTATTTGCTGTAGG+TGG | - | chr4_1:52595883-52595902 | Msa0554860:intron | 35.0% |
| CTAAGACATTTCTTGAGAAG+AGG | - | chr4_1:52595966-52595985 | Msa0554860:CDS | 35.0% | |
| TTCCTTGATTGTCCAATTCT+AGG | - | chr4_1:52596183-52596202 | Msa0554860:intron | 35.0% | |
| TACCTAGAATTGGACAATCA+AGG | + | chr4_1:52596188-52596207 | None:intergenic | 35.0% | |
| ATCATCAAGCTCCATATCAT+CGG | + | chr4_1:52596213-52596232 | None:intergenic | 35.0% | |
| CAATATTGACACTCAAGGAA+GGG | - | chr4_1:52596246-52596265 | Msa0554860:intron | 35.0% | |
| ! | CATTCTTAGAGTTGATTAGG+AGG | - | chr4_1:52596327-52596346 | Msa0554860:intron | 35.0% |
| ! | AAGGAAAGTTCGTCTAAGAT+TGG | - | chr4_1:52596462-52596481 | Msa0554860:CDS | 35.0% |
| GTGATCTTGACATTTACCAA+AGG | - | chr4_1:52596552-52596571 | Msa0554860:intron | 35.0% | |
| ! | TAAGCTGACTTTATGTTAGC+AGG | - | chr4_1:52596596-52596615 | Msa0554860:intron | 35.0% |
| ! | AAGCTGACTTTATGTTAGCA+GGG | - | chr4_1:52596597-52596616 | Msa0554860:intron | 35.0% |
| !! | AAGGGATTAGTTTCAAAGAC+TGG | + | chr4_1:52596760-52596779 | None:intergenic | 35.0% |
| AACATTGAAATCGGCATCAT+TGG | - | chr4_1:52596832-52596851 | Msa0554860:intron | 35.0% | |
| GAAAGAAACCAGATGATACA+AGG | + | chr4_1:52596961-52596980 | None:intergenic | 35.0% | |
| GTGAAAACCACAACTGAATA+TGG | + | chr4_1:52597168-52597187 | None:intergenic | 35.0% | |
| ! | TCAAGTCAAGGTATCTAGAA+GGG | + | chr4_1:52597411-52597430 | None:intergenic | 35.0% |
| ! | AATTCCCACTTGCCTAATTT+TGG | + | chr4_1:52597575-52597594 | None:intergenic | 35.0% |
| AAATTAGGCAAGTGGGAATT+AGG | - | chr4_1:52597575-52597594 | Msa0554860:CDS | 35.0% | |
| AATTAGGCAAGTGGGAATTA+GGG | - | chr4_1:52597576-52597595 | Msa0554860:CDS | 35.0% | |
| TGATCAATGAAGACTTGTGA+TGG | - | chr4_1:52598249-52598268 | Msa0554860:five_prime_UTR | 35.0% | |
| AAAAACAAGCTGGGTTTGTA+TGG | + | chr4_1:52598331-52598350 | None:intergenic | 35.0% | |
| !!! | ACAAACCCAGCTTGTTTTTT+TGG | - | chr4_1:52598332-52598351 | Msa0554860:five_prime_UTR | 35.0% |
| TTGTGCCAAAAAAACAAGCT+GGG | + | chr4_1:52598340-52598359 | None:intergenic | 35.0% | |
| TTTGTGCCAAAAAAACAAGC+TGG | + | chr4_1:52598341-52598360 | None:intergenic | 35.0% | |
| !!! | GTTTTTTTGGCACAAAAACC+CGG | - | chr4_1:52598345-52598364 | Msa0554860:five_prime_UTR | 35.0% |
| AGGTGCAATCGGATAATAAA+AGG | + | chr4_1:52598427-52598446 | None:intergenic | 35.0% | |
| AGGAGATGACAATGAAGGAA+GGG | + | chr4_1:52592477-52592496 | None:intergenic | 40.0% | |
| AAACGCAAAACACACAGCAA+TGG | + | chr4_1:52592588-52592607 | None:intergenic | 40.0% | |
| ACCCTTCCACTCTAAATTGA+TGG | + | chr4_1:52592792-52592811 | None:intergenic | 40.0% | |
| ATTTGAACAAGCTTGCCAGA+AGG | + | chr4_1:52593067-52593086 | None:intergenic | 40.0% | |
| GATGCCATTGAAGTTTCTGT+TGG | - | chr4_1:52593477-52593496 | Msa0554860:intron | 40.0% | |
| GTTCCCAACAGAAACTTCAA+TGG | + | chr4_1:52593484-52593503 | None:intergenic | 40.0% | |
| ! | ATGGTTTGTAAACGCAAGGA+GGG | + | chr4_1:52593593-52593612 | None:intergenic | 40.0% |
| ATAGGGGAGAATCAGTTTAG+GGG | + | chr4_1:52593639-52593658 | None:intergenic | 40.0% | |
| CATAGGGGAGAATCAGTTTA+GGG | + | chr4_1:52593640-52593659 | None:intergenic | 40.0% | |
| TCATAGGGGAGAATCAGTTT+AGG | + | chr4_1:52593641-52593660 | None:intergenic | 40.0% | |
| GGAAGTGACTCAACTTAGTT+GGG | - | chr4_1:52593698-52593717 | Msa0554860:intron | 40.0% | |
| CATATATGCATGTGAGCATG+AGG | - | chr4_1:52593900-52593919 | Msa0554860:intron | 40.0% | |
| TCAACGGCAATGGAAAAAGT+AGG | + | chr4_1:52594123-52594142 | None:intergenic | 40.0% | |
| CACTAAAAGTTCAACGGCAA+TGG | + | chr4_1:52594133-52594152 | None:intergenic | 40.0% | |
| !! | TCTTTGTTGTTCAGTGGCAT+GGG | - | chr4_1:52594217-52594236 | Msa0554860:intron | 40.0% |
| GGTTCGAAAAAGCAGAAAAC+AGG | - | chr4_1:52594258-52594277 | Msa0554860:intron | 40.0% | |
| CTTCCTGTTCTGCCAATATT+TGG | - | chr4_1:52594339-52594358 | Msa0554860:intron | 40.0% | |
| TGACCAAATATTGGCAGAAC+AGG | + | chr4_1:52594345-52594364 | None:intergenic | 40.0% | |
| CTAAGATCCCATGTTCGAAA+AGG | + | chr4_1:52594472-52594491 | None:intergenic | 40.0% | |
| CACTCAGAATTCATCTCACA+AGG | + | chr4_1:52594510-52594529 | None:intergenic | 40.0% | |
| GTGAGATGAATTCTGAGTGT+TGG | - | chr4_1:52594511-52594530 | Msa0554860:intron | 40.0% | |
| ATGCAGGAATTTACTCAGTC+TGG | - | chr4_1:52594729-52594748 | Msa0554860:CDS | 40.0% | |
| TGCAGGAATTTACTCAGTCT+GGG | - | chr4_1:52594730-52594749 | Msa0554860:CDS | 40.0% | |
| TATGCCACTCCTCCAAAAAA+AGG | - | chr4_1:52594876-52594895 | Msa0554860:intron | 40.0% | |
| !!! | CTTTCCTTTTTTTGGAGGAG+TGG | + | chr4_1:52594883-52594902 | None:intergenic | 40.0% |
| !! | CCAAAAACTCAAAGTTGGTG+AGG | + | chr4_1:52594941-52594960 | None:intergenic | 40.0% |
| !! | CCTCACCAACTTTGAGTTTT+TGG | - | chr4_1:52594938-52594957 | Msa0554860:intron | 40.0% |
| !! | TTTTTAGTGAGGGGGTGATA+AGG | + | chr4_1:52595024-52595043 | None:intergenic | 40.0% |
| ! | GTTAGTTTCATGCAACGGTT+CGG | - | chr4_1:52595315-52595334 | Msa0554860:intron | 40.0% |
| ! | GTTGCTGGGTTTGATGATAA+TGG | - | chr4_1:52595554-52595573 | Msa0554860:intron | 40.0% |
| TTCTTGGAAAGCTTCTGCTA+TGG | - | chr4_1:52595925-52595944 | Msa0554860:intron | 40.0% | |
| TCTTGGAAAGCTTCTGCTAT+GGG | - | chr4_1:52595926-52595945 | Msa0554860:intron | 40.0% | |
| TGAGTGTCAATATTGCTGTG+TGG | + | chr4_1:52596241-52596260 | None:intergenic | 40.0% | |
| CACAGCAATATTGACACTCA+AGG | - | chr4_1:52596241-52596260 | Msa0554860:intron | 40.0% | |
| GCAATATTGACACTCAAGGA+AGG | - | chr4_1:52596245-52596264 | Msa0554860:intron | 40.0% | |
| ATCAAAATGTTGCTCCCTCT+CGG | - | chr4_1:52596396-52596415 | Msa0554860:intron | 40.0% | |
| CTATCATACACTATCCGAGA+GGG | + | chr4_1:52596413-52596432 | None:intergenic | 40.0% | |
| !! | TTCGTCTAAGATTGGCTTCT+TGG | - | chr4_1:52596470-52596489 | Msa0554860:intron | 40.0% |
| !! | ATTTTAGAGGGACAAGCCTT+TGG | + | chr4_1:52596571-52596590 | None:intergenic | 40.0% |
| TTGGTGCAGACAAAAAGTTC+AGG | - | chr4_1:52596851-52596870 | Msa0554860:intron | 40.0% | |
| CAACTGAATATGGTCTGACT+TGG | + | chr4_1:52597158-52597177 | None:intergenic | 40.0% | |
| AGTCAGACCATATTCAGTTG+TGG | - | chr4_1:52597158-52597177 | Msa0554860:intron | 40.0% | |
| TGGCAACAATAGTAGACTGT+CGG | + | chr4_1:52597224-52597243 | None:intergenic | 40.0% | |
| GCAAGTGGAGGAATATTATG+TGG | + | chr4_1:52597244-52597263 | None:intergenic | 40.0% | |
| ! | GTCAAGTCAAGGTATCTAGA+AGG | + | chr4_1:52597412-52597431 | None:intergenic | 40.0% |
| CAACAGTAGTAGTCAAGTCA+AGG | + | chr4_1:52597423-52597442 | None:intergenic | 40.0% | |
| !! | AATGACTGTAGAGAGGTGTT+TGG | + | chr4_1:52597455-52597474 | None:intergenic | 40.0% |
| CGGATTTAATGACTGTAGAG+AGG | + | chr4_1:52597462-52597481 | None:intergenic | 40.0% | |
| CACTTGTGACCACCAAAATT+AGG | - | chr4_1:52597560-52597579 | Msa0554860:CDS | 40.0% | |
| ACCACCAAAATTAGGCAAGT+GGG | - | chr4_1:52597568-52597587 | Msa0554860:CDS | 40.0% | |
| GGGAAGTTATCCATTTGCAT+TGG | + | chr4_1:52597960-52597979 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTGAACGCCGGATT+CGG | - | chr4_1:52598068-52598087 | Msa0554860:intron | 40.0% |
| !! | CTGTTGGTTCCGTATTCGTT+CGG | + | chr4_1:52592300-52592319 | None:intergenic | 45.0% |
| TGACAATGAAGGAAGGGTTC+AGG | + | chr4_1:52592471-52592490 | None:intergenic | 45.0% | |
| GAGGAGATGACAATGAAGGA+AGG | + | chr4_1:52592478-52592497 | None:intergenic | 45.0% | |
| GGAAGAGGAGATGACAATGA+AGG | + | chr4_1:52592482-52592501 | None:intergenic | 45.0% | |
| !!! | GAGAGGAACTGTTTTGGAAG+AGG | + | chr4_1:52592497-52592516 | None:intergenic | 45.0% |
| ! | TGCTTCGAGAGGAACTGTTT+TGG | + | chr4_1:52592503-52592522 | None:intergenic | 45.0% |
| AGTTTGTCCAGAACCAACAG+CGG | + | chr4_1:52593104-52593123 | None:intergenic | 45.0% | |
| !! | GGTTCTGGACAAACTTCTCT+CGG | - | chr4_1:52593109-52593128 | Msa0554860:intron | 45.0% |
| CTCGGTATCAAAGCTGCAAA+TGG | - | chr4_1:52593127-52593146 | Msa0554860:intron | 45.0% | |
| GAGGTAGCTGCTTCATACTT+TGG | - | chr4_1:52593415-52593434 | Msa0554860:intron | 45.0% | |
| ! | GATGGTTTGTAAACGCAAGG+AGG | + | chr4_1:52593594-52593613 | None:intergenic | 45.0% |
| TTCCTAGATATGGCAACCTG+AGG | - | chr4_1:52593676-52593695 | Msa0554860:intron | 45.0% | |
| TCCTAGATATGGCAACCTGA+GGG | - | chr4_1:52593677-52593696 | Msa0554860:intron | 45.0% | |
| ! | TAAGTTGAGTCACTTCCCTC+AGG | + | chr4_1:52593695-52593714 | None:intergenic | 45.0% |
| GGGAAGTGACTCAACTTAGT+TGG | - | chr4_1:52593697-52593716 | Msa0554860:intron | 45.0% | |
| ATATGCATGTGAGCATGAGG+TGG | - | chr4_1:52593903-52593922 | Msa0554860:intron | 45.0% | |
| !! | GTCTTTGTTGTTCAGTGGCA+TGG | - | chr4_1:52594216-52594235 | Msa0554860:intron | 45.0% |
| CGAACCAATACTCGGAAATC+AGG | + | chr4_1:52594244-52594263 | None:intergenic | 45.0% | |
| ! | ACAAGTTGAGTGACAGGGAT+TGG | + | chr4_1:52594690-52594709 | None:intergenic | 45.0% |
| TCCCTGTCACTCAACTTGTA+AGG | - | chr4_1:52594691-52594710 | Msa0554860:intron | 45.0% | |
| ! | CCCTTACAAGTTGAGTGACA+GGG | + | chr4_1:52594695-52594714 | None:intergenic | 45.0% |
| CCCTGTCACTCAACTTGTAA+GGG | - | chr4_1:52594692-52594711 | Msa0554860:intron | 45.0% | |
| ! | TCCCTTACAAGTTGAGTGAC+AGG | + | chr4_1:52594696-52594715 | None:intergenic | 45.0% |
| CTGCATGCAGTGAACTTAGT+TGG | - | chr4_1:52595403-52595422 | Msa0554860:intron | 45.0% | |
| !! | TTTGTCCTGATAGTGGTGTC+CGG | - | chr4_1:52595510-52595529 | Msa0554860:intron | 45.0% |
| ACAAGCAGAGACACTCCAAA+TGG | + | chr4_1:52595536-52595555 | None:intergenic | 45.0% | |
| CCAATGAGCGAATACTGTCT+TGG | + | chr4_1:52595677-52595696 | None:intergenic | 45.0% | |
| CCAAGACAGTATTCGCTCAT+TGG | - | chr4_1:52595674-52595693 | Msa0554860:intron | 45.0% | |
| CCAATGAGCGAATACTGTCT+TGG | + | chr4_1:52595677-52595696 | None:intergenic | 45.0% | |
| CCAAGACAGTATTCGCTCAT+TGG | - | chr4_1:52595674-52595693 | Msa0554860:intron | 45.0% | |
| CTTGGAAAGCTTCTGCTATG+GGG | - | chr4_1:52595927-52595946 | Msa0554860:intron | 45.0% | |
| !! | AACCCACATAATGGACACAG+CGG | + | chr4_1:52596063-52596082 | None:intergenic | 45.0% |
| ATTGACACTCAAGGAAGGGT+AGG | - | chr4_1:52596250-52596269 | Msa0554860:intron | 45.0% | |
| GCTATCATACACTATCCGAG+AGG | + | chr4_1:52596414-52596433 | None:intergenic | 45.0% | |
| !! | GGGCTTCAAGCTTGTTAGAT+TGG | - | chr4_1:52596617-52596636 | Msa0554860:intron | 45.0% |
| !!! | TTCGGTGTTTTCCAGGTTTG+AGG | - | chr4_1:52596792-52596811 | Msa0554860:intron | 45.0% |
| !! | TCGGTGTTTTCCAGGTTTGA+GGG | - | chr4_1:52596793-52596812 | Msa0554860:intron | 45.0% |
| GGCAACAATAGTAGACTGTC+GGG | + | chr4_1:52597223-52597242 | None:intergenic | 45.0% | |
| AGTATGTCACATGGTGACAG+TGG | + | chr4_1:52597279-52597298 | None:intergenic | 45.0% | |
| !! | AGATGGAGGGGTGTTACAAT+GGG | + | chr4_1:52597327-52597346 | None:intergenic | 45.0% |
| !! | AAGATGGAGGGGTGTTACAA+TGG | + | chr4_1:52597328-52597347 | None:intergenic | 45.0% |
| ! | AAGGTATCTAGAAGGGCAGT+CGG | + | chr4_1:52597404-52597423 | None:intergenic | 45.0% |
| GACCACCAAAATTAGGCAAG+TGG | - | chr4_1:52597567-52597586 | Msa0554860:CDS | 45.0% | |
| ! | TCCCACTTGCCTAATTTTGG+TGG | + | chr4_1:52597572-52597591 | None:intergenic | 45.0% |
| ! | CTTAATTTTTGCTGGTGGGG+TGG | - | chr4_1:52598010-52598029 | Msa0554860:intron | 45.0% |
| CAACTTCGGGAACATAAGGA+TGG | + | chr4_1:52598186-52598205 | None:intergenic | 45.0% | |
| CATCCTTATGTTCCCGAAGT+TGG | - | chr4_1:52598184-52598203 | Msa0554860:five_prime_UTR | 45.0% | |
| ACACCAACTTCGGGAACATA+AGG | + | chr4_1:52598190-52598209 | None:intergenic | 45.0% | |
| ATGAAGACTTGTGATGGCAC+TGG | - | chr4_1:52598255-52598274 | Msa0554860:five_prime_UTR | 45.0% | |
| !! | TTAAAAGAAAAAAAAAAAAA+AGG | + | chr4_1:52594993-52595012 | None:intergenic | 5.0% |
| GAGCATGCTTTAACCGCTGT+TGG | - | chr4_1:52593088-52593107 | Msa0554860:intron | 50.0% | |
| !! | GCTTTAACCGCTGTTGGTTC+TGG | - | chr4_1:52593094-52593113 | Msa0554860:intron | 50.0% |
| AACGCAAGGAGGGAAACCTT+TGG | + | chr4_1:52593583-52593602 | None:intergenic | 50.0% | |
| ! | TCCCTCAGGTTGCCATATCT+AGG | + | chr4_1:52593681-52593700 | None:intergenic | 50.0% |
| GGGTCCTGATTTCCGAGTAT+TGG | - | chr4_1:52594237-52594256 | Msa0554860:intron | 50.0% | |
| ! | GAGTGTCTCTGCTTGTTGCT+GGG | - | chr4_1:52595540-52595559 | Msa0554860:intron | 50.0% |
| TTGCTGTAGGTGGATCCATC+AGG | - | chr4_1:52595893-52595912 | Msa0554860:intron | 50.0% | |
| TGTCCGCTGTGTCCATTATG+TGG | - | chr4_1:52596057-52596076 | Msa0554860:intron | 50.0% | |
| GTCCGCTGTGTCCATTATGT+GGG | - | chr4_1:52596058-52596077 | Msa0554860:intron | 50.0% | |
| TGAGATCTGTCCCTCAAACC+TGG | + | chr4_1:52596806-52596825 | None:intergenic | 50.0% | |
| ! | AGTTTGAGGCATTCGGGTAG+CGG | - | chr4_1:52597048-52597067 | Msa0554860:intron | 50.0% |
| ! | AGGGTGTTTAGTGCAAGTGG+AGG | + | chr4_1:52597256-52597275 | None:intergenic | 50.0% |
| !! | TGGAGGGTGTTTAGTGCAAG+TGG | + | chr4_1:52597259-52597278 | None:intergenic | 50.0% |
| TGTCACATGGTGACAGTGGA+GGG | + | chr4_1:52597275-52597294 | None:intergenic | 50.0% | |
| ATGTCACATGGTGACAGTGG+AGG | + | chr4_1:52597276-52597295 | None:intergenic | 50.0% | |
| CGACGATGGAGTATGTCACA+TGG | + | chr4_1:52597288-52597307 | None:intergenic | 50.0% | |
| !! | ATGGAGGGGTGTTACAATGG+GGG | + | chr4_1:52597325-52597344 | None:intergenic | 50.0% |
| !! | GATGGAGGGGTGTTACAATG+GGG | + | chr4_1:52597326-52597345 | None:intergenic | 50.0% |
| TTGACAGCAGAGAGAGTGGT+GGG | + | chr4_1:52597353-52597372 | None:intergenic | 50.0% | |
| GTACTTGACAGCAGAGAGAG+TGG | + | chr4_1:52597357-52597376 | None:intergenic | 50.0% | |
| ! | AGTGTTGAGCAAGGATGGAG+AGG | + | chr4_1:52597379-52597398 | None:intergenic | 50.0% |
| !! | AGAGAGGTGTTTGGTGGTGA+TGG | + | chr4_1:52597446-52597465 | None:intergenic | 50.0% |
| !! | GACTGTAGAGAGGTGTTTGG+TGG | + | chr4_1:52597452-52597471 | None:intergenic | 50.0% |
| CCAGCAGCAATGATTGTGGA+CGG | + | chr4_1:52597482-52597501 | None:intergenic | 50.0% | |
| GAGTGACGACAATGGAAAGG+TGG | + | chr4_1:52597516-52597535 | None:intergenic | 50.0% | |
| CACGAGTGACGACAATGGAA+AGG | + | chr4_1:52597519-52597538 | None:intergenic | 50.0% | |
| !! | TTTTGGTGGTCACAAGTGCC+TGG | + | chr4_1:52597558-52597577 | None:intergenic | 50.0% |
| TAGGCAAGTGGGAATTAGGG+TGG | - | chr4_1:52597579-52597598 | Msa0554860:CDS | 50.0% | |
| GTGGGAATTAGGGTGGAAAG+AGG | - | chr4_1:52597586-52597605 | Msa0554860:CDS | 50.0% | |
| GTGGGAGAACTCACCTGAAC+TGG | + | chr4_1:52592347-52592366 | None:intergenic | 55.0% | |
| GGAAGTTGCTGCCGTTATGC+AGG | - | chr4_1:52594713-52594732 | Msa0554860:intron | 55.0% | |
| AATGGCCGGACACCACTATC+AGG | + | chr4_1:52595518-52595537 | None:intergenic | 55.0% | |
| ! | GATAGTGGTGTCCGGCCATT+TGG | - | chr4_1:52595518-52595537 | Msa0554860:intron | 55.0% |
| GCAGAGACACTCCAAATGGC+CGG | + | chr4_1:52595532-52595551 | None:intergenic | 55.0% | |
| ! | GGAGTGTCTCTGCTTGTTGC+TGG | - | chr4_1:52595539-52595558 | Msa0554860:intron | 55.0% |
| ! | GTTTGAGGCATTCGGGTAGC+GGG | - | chr4_1:52597049-52597068 | Msa0554860:intron | 55.0% |
| ATACCACACGCTGACGACGA+TGG | + | chr4_1:52597302-52597321 | None:intergenic | 55.0% | |
| ! | AGTGGTGGGAGAAGATGGAG+GGG | + | chr4_1:52597339-52597358 | None:intergenic | 55.0% |
| ! | GAGTGGTGGGAGAAGATGGA+GGG | + | chr4_1:52597340-52597359 | None:intergenic | 55.0% |
| ! | AGAGTGGTGGGAGAAGATGG+AGG | + | chr4_1:52597341-52597360 | None:intergenic | 55.0% |
| ! | GAGAGAGTGGTGGGAGAAGA+TGG | + | chr4_1:52597344-52597363 | None:intergenic | 55.0% |
| CTTGACAGCAGAGAGAGTGG+TGG | + | chr4_1:52597354-52597373 | None:intergenic | 55.0% | |
| !! | CGGAGAGTGTTGAGCAAGGA+TGG | + | chr4_1:52597384-52597403 | None:intergenic | 55.0% |
| !! | CAGTCGGAGAGTGTTGAGCA+AGG | + | chr4_1:52597388-52597407 | None:intergenic | 55.0% |
| CCGTCCACAATCATTGCTGC+TGG | - | chr4_1:52597479-52597498 | Msa0554860:intron | 55.0% | |
| TGCGCCAGCAGCAATGATTG+TGG | + | chr4_1:52597486-52597505 | None:intergenic | 55.0% | |
| AGGGTCACGAGTGACGACAA+TGG | + | chr4_1:52597524-52597543 | None:intergenic | 55.0% | |
| TCACAAGTGCCTGGTGGCAA+TGG | + | chr4_1:52597549-52597568 | None:intergenic | 55.0% | |
| ! | TTTTGCTGGTGGGGTGGCAT+TGG | - | chr4_1:52598016-52598035 | Msa0554860:intron | 55.0% |
| TTTGCTGGTGGGGTGGCATT+GGG | - | chr4_1:52598017-52598036 | Msa0554860:intron | 55.0% | |
| !! | AGGCATTCGGGTAGCGGGTT+GGG | - | chr4_1:52597054-52597073 | Msa0554860:intron | 60.0% |
| ACTCCATCGTCGTCAGCGTG+TGG | - | chr4_1:52597296-52597315 | Msa0554860:intron | 60.0% | |
| TGACCCTCACCATTGCCACC+AGG | - | chr4_1:52597537-52597556 | Msa0554860:CDS | 60.0% | |
| GTGCCTGGTGGCAATGGTGA+GGG | + | chr4_1:52597543-52597562 | None:intergenic | 60.0% | |
| AGTGCCTGGTGGCAATGGTG+AGG | + | chr4_1:52597544-52597563 | None:intergenic | 60.0% | |
| TGGTGGTCACAAGTGCCTGG+TGG | + | chr4_1:52597555-52597574 | None:intergenic | 60.0% | |
| AGGGTGGAAAGAGGAGACGC+AGG | - | chr4_1:52597595-52597614 | Msa0554860:CDS | 60.0% | |
| TTGCTGGTGGGGTGGCATTG+GGG | - | chr4_1:52598018-52598037 | Msa0554860:intron | 60.0% | |
| !! | GAGGCATTCGGGTAGCGGGT+TGG | - | chr4_1:52597053-52597072 | Msa0554860:intron | 65.0% |
| !! | TCGGGTAGCGGGTTGGGACT+AGG | - | chr4_1:52597060-52597079 | Msa0554860:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 52592210 | 52598502 | 52592210 | ID=Msa0554860;Name=Msa0554860 |
| chr4_1 | mRNA | 52592210 | 52598502 | 52592210 | ID=Msa0554860-mRNA-1;Parent=Msa0554860;Name=Msa0554860-mRNA-1;_AED=0.09;_eAED=0.09;_QI=350|0.9|0.90|1|0.7|0.63|11|308|239 |
| chr4_1 | exon | 52592210 | 52592335 | 52592210 | ID=Msa0554860-mRNA-1:exon:15250;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52592364 | 52592594 | 52592364 | ID=Msa0554860-mRNA-1:exon:15249;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52593840 | 52593905 | 52593840 | ID=Msa0554860-mRNA-1:exon:15248;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52594445 | 52594507 | 52594445 | ID=Msa0554860-mRNA-1:exon:15247;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52594725 | 52594810 | 52594725 | ID=Msa0554860-mRNA-1:exon:15246;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52595120 | 52595189 | 52595120 | ID=Msa0554860-mRNA-1:exon:15245;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52595961 | 52596059 | 52595961 | ID=Msa0554860-mRNA-1:exon:15244;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52596425 | 52596481 | 52596425 | ID=Msa0554860-mRNA-1:exon:15243;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52597366 | 52597412 | 52597366 | ID=Msa0554860-mRNA-1:exon:15242;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52597508 | 52597710 | 52597508 | ID=Msa0554860-mRNA-1:exon:15241;Parent=Msa0554860-mRNA-1 |
| chr4_1 | exon | 52598173 | 52598502 | 52598173 | ID=Msa0554860-mRNA-1:exon:15240;Parent=Msa0554860-mRNA-1 |
| chr4_1 | five_prime_UTR | 52598173 | 52598502 | 52598173 | ID=Msa0554860-mRNA-1:five_prime_utr;Parent=Msa0554860-mRNA-1 |
| chr4_1 | five_prime_UTR | 52597691 | 52597710 | 52597691 | ID=Msa0554860-mRNA-1:five_prime_utr;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52597508 | 52597690 | 52597508 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52597366 | 52597412 | 52597366 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52596425 | 52596481 | 52596425 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52595961 | 52596059 | 52595961 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52595120 | 52595189 | 52595120 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52594725 | 52594810 | 52594725 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52594445 | 52594507 | 52594445 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52593840 | 52593905 | 52593840 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | CDS | 52592546 | 52592594 | 52592546 | ID=Msa0554860-mRNA-1:cds;Parent=Msa0554860-mRNA-1 |
| chr4_1 | three_prime_UTR | 52592364 | 52592545 | 52592364 | ID=Msa0554860-mRNA-1:three_prime_utr;Parent=Msa0554860-mRNA-1 |
| chr4_1 | three_prime_UTR | 52592210 | 52592335 | 52592210 | ID=Msa0554860-mRNA-1:three_prime_utr;Parent=Msa0554860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
