Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608570 | XP_003607535.1 | 98.820 | 678 | 8 | 0 | 1 | 678 | 1 | 678 | 0.0 | 1400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608570 | sp|P0CZ23|ACOX3_ARATH | 72.083 | 677 | 186 | 2 | 1 | 676 | 1 | 675 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608570 | G7JUZ2 | 98.820 | 678 | 8 | 0 | 1 | 678 | 1 | 678 | 0.0 | 1400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608570 | Msa0649100 | 0.918133 | 2.269039e-86 | -8.615850e-47 |
| Msa0608570 | Msa0691480 | 0.943698 | 7.513853e-103 | -8.615850e-47 |
| Msa0608570 | Msa1284090 | 0.809323 | 2.002551e-50 | -8.615850e-47 |
| Msa0608570 | Msa1387240 | 0.802458 | 5.557220e-49 | -8.615850e-47 |
| Msa0196880 | Msa0608570 | 0.818580 | 1.819846e-52 | -8.615850e-47 |
| Msa0573950 | Msa0608570 | 0.805095 | 1.574805e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608570 | MtrunA17_Chr4g0040751 | 98.820 | 678 | 8 | 0 | 1 | 678 | 1 | 678 | 0.0 | 1400 |
| Msa0608570 | MtrunA17_Chr8g0382531 | 36.893 | 618 | 343 | 14 | 82 | 664 | 68 | 673 | 6.19e-119 | 370 |
| Msa0608570 | MtrunA17_Chr5g0399451 | 30.996 | 542 | 318 | 14 | 153 | 663 | 101 | 617 | 4.38e-74 | 251 |
| Msa0608570 | MtrunA17_Chr4g0055941 | 29.490 | 529 | 336 | 13 | 158 | 663 | 103 | 617 | 1.57e-67 | 234 |
| Msa0608570 | MtrunA17_Chr6g0474461 | 91.803 | 61 | 5 | 0 | 73 | 133 | 1 | 61 | 1.98e-33 | 122 |
| Msa0608570 | MtrunA17_Chr2g0294151 | 76.000 | 50 | 12 | 0 | 98 | 147 | 1 | 50 | 5.89e-19 | 82.4 |
| Msa0608570 | MtrunA17_Chr7g0242641 | 23.263 | 331 | 208 | 11 | 144 | 474 | 51 | 335 | 5.94e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608570 | AT1G06290.1 | 72.083 | 677 | 186 | 2 | 1 | 676 | 1 | 675 | 0.0 | 1061 |
| Msa0608570 | AT1G06310.1 | 69.527 | 676 | 203 | 2 | 1 | 675 | 1 | 674 | 0.0 | 1018 |
| Msa0608570 | AT5G65110.1 | 38.017 | 605 | 333 | 14 | 97 | 674 | 95 | 684 | 2.04e-118 | 370 |
| Msa0608570 | AT5G65110.2 | 38.571 | 560 | 306 | 12 | 97 | 630 | 95 | 642 | 1.92e-113 | 355 |
| Msa0608570 | AT3G06690.1 | 65.269 | 167 | 58 | 0 | 510 | 676 | 21 | 187 | 2.54e-75 | 240 |
| Msa0608570 | AT4G16760.2 | 31.061 | 528 | 329 | 13 | 158 | 663 | 90 | 604 | 3.62e-68 | 236 |
| Msa0608570 | AT4G16760.1 | 30.755 | 530 | 335 | 12 | 153 | 663 | 101 | 617 | 4.01e-68 | 236 |
| Msa0608570 | AT2G35690.1 | 29.050 | 537 | 339 | 12 | 151 | 663 | 99 | 617 | 6.81e-64 | 224 |
Find 220 sgRNAs with CRISPR-Local
Find 421 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAGCTATTCGGATATT+TGG | 0.062882 | 4_2:+55697727 | None:intergenic |
| AAACCGTATTGGTCAATTTA+AGG | 0.139356 | 4_2:-55696386 | Msa0608570:CDS |
| TATTATTCACATTTCCTTAT+TGG | 0.145717 | 4_2:+55694255 | None:intergenic |
| ATGACAAACTCACCAGAATT+TGG | 0.201015 | 4_2:+55698035 | None:intergenic |
| GGTCACAAAATTGGTTTAAA+TGG | 0.204440 | 4_2:-55697703 | Msa0608570:CDS |
| CATCAAGAGCAGTGAATTTC+AGG | 0.216438 | 4_2:-55695118 | Msa0608570:intron |
| GCTGAATGTGGTCACAAAAT+TGG | 0.219965 | 4_2:-55697712 | Msa0608570:CDS |
| TTGGCTCTTCATGAGGTTAT+TGG | 0.237880 | 4_2:-55699022 | Msa0608570:CDS |
| GGGCGGGGCTGTAAAGTTTC+TGG | 0.243388 | 4_2:-55698290 | Msa0608570:CDS |
| AGCAATACTGAAAACATTTA+TGG | 0.246846 | 4_2:-55694779 | Msa0608570:CDS |
| AACAAACCATTTAAAGGTCT+TGG | 0.280881 | 4_2:-55695198 | Msa0608570:CDS |
| TTCCATCTGAATCCCTGATT+TGG | 0.280970 | 4_2:+55697758 | None:intergenic |
| CAATGTGGATAATATTTGTT+AGG | 0.282218 | 4_2:-55694098 | Msa0608570:three_prime_UTR |
| TCTAATCCAAGACCTTTAAA+TGG | 0.282466 | 4_2:+55695192 | None:intergenic |
| GACGCTGCCTTTCTCCGATA+TGG | 0.285263 | 4_2:-55694539 | Msa0608570:CDS |
| TCTCCTCTGCAGGATGTCTT+AGG | 0.292318 | 4_2:-55694602 | Msa0608570:intron |
| CAAATACGCAATTCGTTTCA+TGG | 0.303772 | 4_2:+55699108 | None:intergenic |
| TCAATAGGTCTCGCTCTCTT+AGG | 0.305094 | 4_2:+55694994 | None:intergenic |
| CTGAAATTCACTGCTCTTGA+TGG | 0.308244 | 4_2:+55695119 | None:intergenic |
| CTTGCCTTGGTTAACTCCTT+TGG | 0.312555 | 4_2:-55694440 | Msa0608570:CDS |
| GAATAATATGCGTACTCTTC+AGG | 0.319191 | 4_2:-55696543 | Msa0608570:intron |
| TGGATTTGATTCGGAGAGTT+CGG | 0.330563 | 4_2:+55699306 | None:intergenic |
| ATTCAGCTATTCGGATATTT+GGG | 0.337889 | 4_2:+55697728 | None:intergenic |
| GGTTTAAATGGAGTTGATAA+TGG | 0.338212 | 4_2:-55697691 | Msa0608570:CDS |
| GAAGATCGCGACTGGCTATT+CGG | 0.342629 | 4_2:-55699232 | Msa0608570:CDS |
| AAAAGTGAATTCTAGTCATT+AGG | 0.348637 | 4_2:+55694214 | None:intergenic |
| GATGAAGATAGCGTGTGTTT+TGG | 0.350490 | 4_2:+55699473 | None:intergenic |
| TCCATCTGAATCCCTGATTT+GGG | 0.353613 | 4_2:+55697759 | None:intergenic |
| TGAGCCCTATTGCATACAAC+TGG | 0.357438 | 4_2:-55694400 | Msa0608570:CDS |
| CTTTGAGATGCGAAAGCTCT+TGG | 0.365539 | 4_2:-55699269 | Msa0608570:CDS |
| GGAATTTAACAAATTCTCTC+TGG | 0.369490 | 4_2:+55697542 | None:intergenic |
| GGATTTGATTCGGAGAGTTC+GGG | 0.370117 | 4_2:+55699307 | None:intergenic |
| TGTGACCACATTCAGCTATT+CGG | 0.372695 | 4_2:+55697719 | None:intergenic |
| GAAACGAATTGCGTATTTGT+TGG | 0.373037 | 4_2:-55699104 | Msa0608570:CDS |
| CAACATAAACGGAAGCAATC+AGG | 0.373818 | 4_2:-55697800 | Msa0608570:CDS |
| GAATTCCAACAGCTTATTGC+AGG | 0.374668 | 4_2:+55694068 | None:intergenic |
| TTATCAGCTTGCTGAGGACT+TGG | 0.379509 | 4_2:-55694821 | Msa0608570:CDS |
| AACCGTATTGGTCAATTTAA+GGG | 0.379544 | 4_2:-55696385 | Msa0608570:CDS |
| TGGGTCGTGGCGGAGGTGAT+TGG | 0.379947 | 4_2:+55699381 | None:intergenic |
| TCTGCATGTGATTGAGGTAT+TGG | 0.380289 | 4_2:-55694326 | Msa0608570:three_prime_UTR |
| TTCTTAGCCCCTTTGACCTC+TGG | 0.384312 | 4_2:-55697339 | Msa0608570:CDS |
| TGGAGGATTGTTGGTGCGGT+TGG | 0.385269 | 4_2:+55699358 | None:intergenic |
| TCCATGGACTGATTATAATC+AGG | 0.392905 | 4_2:+55699148 | None:intergenic |
| TCAACCCAGTTGTATGCAAT+AGG | 0.394427 | 4_2:+55694395 | None:intergenic |
| TGAAGTTTGGTGTTGGGAAA+TGG | 0.394587 | 4_2:+55699528 | None:intergenic |
| AACTTCCTCAACTCTTCTTG+TGG | 0.399283 | 4_2:+55699043 | None:intergenic |
| GAGTTGATAATGGCCGTATC+TGG | 0.403465 | 4_2:-55697681 | Msa0608570:intron |
| AAGATCGCGACTGGCTATTC+GGG | 0.408048 | 4_2:-55699231 | Msa0608570:CDS |
| CATTGGTATATGCAGGGGTC+AGG | 0.409692 | 4_2:+55694157 | None:intergenic |
| ACTGGGTTGAGTCAAATTCT+TGG | 0.409758 | 4_2:-55694382 | Msa0608570:CDS |
| GCTCTTGGACGGTCACAATC+TGG | 0.413012 | 4_2:-55699254 | Msa0608570:CDS |
| CATCTCCCTCTGTTGTTCCA+TGG | 0.413358 | 4_2:+55699132 | None:intergenic |
| CGAAGTTCAGCACATAGCTT+TGG | 0.414228 | 4_2:+55694473 | None:intergenic |
| AGTAAAACCTCAGGCCCATT+TGG | 0.419355 | 4_2:+55697099 | None:intergenic |
| ACTACTTATGATCCAAATTC+TGG | 0.419459 | 4_2:-55698047 | Msa0608570:CDS |
| AGGATTGTTGGTGCGGTTGG+TGG | 0.420230 | 4_2:+55699361 | None:intergenic |
| TAATAGTGAAGTTTGGTGTT+GGG | 0.427995 | 4_2:+55699522 | None:intergenic |
| CATTCTCTTGCTGTTAAGCT+TGG | 0.432008 | 4_2:-55698989 | Msa0608570:CDS |
| CCGTGAAGCATGTGGAGGAC+AGG | 0.433137 | 4_2:-55696422 | Msa0608570:CDS |
| GGATTGTTGGTGCGGTTGGT+GGG | 0.435760 | 4_2:+55699362 | None:intergenic |
| ATGATTTACCTTCAATGAAC+CGG | 0.436593 | 4_2:+55694735 | None:intergenic |
| ACTTCCTCAACTCTTCTTGT+GGG | 0.444218 | 4_2:+55699044 | None:intergenic |
| GATAATGCATTGGTATATGC+AGG | 0.449447 | 4_2:+55694150 | None:intergenic |
| GGTGAGGATGGTGGTTCGGC+GGG | 0.450256 | 4_2:+55699402 | None:intergenic |
| GAAGTTTGGTGTTGGGAAAT+GGG | 0.452584 | 4_2:+55699529 | None:intergenic |
| CTATAGCAAAACGTTTCAAT+AGG | 0.454415 | 4_2:+55694979 | None:intergenic |
| CTGTTGACAAGTATCCATAT+CGG | 0.457876 | 4_2:+55694525 | None:intergenic |
| TTAATAGTGAAGTTTGGTGT+TGG | 0.458872 | 4_2:+55699521 | None:intergenic |
| CACCCTTAAATTGACCAATA+CGG | 0.463490 | 4_2:+55696383 | None:intergenic |
| CGGTTGGTGGGTCGTGGCGG+AGG | 0.463795 | 4_2:+55699374 | None:intergenic |
| CGTGGGTGGCTTACTGGTGA+TGG | 0.467490 | 4_2:-55699067 | Msa0608570:CDS |
| GAATGTTGTTGGATTTGATT+CGG | 0.467551 | 4_2:+55699297 | None:intergenic |
| GATTGGTGAGGATGGTGGTT+CGG | 0.471188 | 4_2:+55699398 | None:intergenic |
| ACCGGCGGGAAGTCGACGGC+AGG | 0.473101 | 4_2:-55699183 | Msa0608570:CDS |
| GTAGAACTTGTTAACTGAGA+TGG | 0.473386 | 4_2:+55695141 | None:intergenic |
| CCTGTCCTCCACATGCTTCA+CGG | 0.473869 | 4_2:+55696422 | None:intergenic |
| TATTGTTTCTAGTGCATACA+AGG | 0.474725 | 4_2:-55696579 | Msa0608570:CDS |
| TTGGTGCGGTTGGTGGGTCG+TGG | 0.475082 | 4_2:+55699368 | None:intergenic |
| TGACGTGCATTCAACATTTG+AGG | 0.475703 | 4_2:-55696356 | Msa0608570:CDS |
| GCTATGTCTGAGTTGGGCCA+TGG | 0.475827 | 4_2:-55698202 | Msa0608570:CDS |
| TCAAAGGTGTCGAATGTTGT+TGG | 0.478788 | 4_2:+55699286 | None:intergenic |
| CCCATTTGGTGTAATAGAAA+AGG | 0.481194 | 4_2:+55697113 | None:intergenic |
| TTTACCAGCCGGTTCATTGA+AGG | 0.481975 | 4_2:-55694743 | Msa0608570:intron |
| GCACTCAAGTATTCGCCACT+TGG | 0.483267 | 4_2:+55697504 | None:intergenic |
| GCCAACTGAGTTATGCTCTC+GGG | 0.483404 | 4_2:-55694124 | Msa0608570:three_prime_UTR |
| AATAGACGTTGTTGATGACT+TGG | 0.483886 | 4_2:+55697066 | None:intergenic |
| TTACACGACCAGAGGTCAAA+GGG | 0.484386 | 4_2:+55697331 | None:intergenic |
| GGCGGGGCTGTAAAGTTTCT+GGG | 0.487569 | 4_2:-55698289 | Msa0608570:CDS |
| GTGAGTCAGCTCAGAAGTAT+TGG | 0.488256 | 4_2:-55698001 | Msa0608570:CDS |
| AACATAAACGGAAGCAATCA+GGG | 0.488638 | 4_2:-55697799 | Msa0608570:CDS |
| CCACTTGTCATGGTGACGCT+TGG | 0.490777 | 4_2:+55698264 | None:intergenic |
| AGTGAATAAGTGGGGTGTGT+GGG | 0.490848 | 4_2:-55694188 | Msa0608570:three_prime_UTR |
| GGTGATGCGGTTGTTGTCCA+TGG | 0.493781 | 4_2:+55699423 | None:intergenic |
| TGAATTGCTTTGTTTGACTC+AGG | 0.494253 | 4_2:+55696602 | None:intergenic |
| TGGTGAGGATGGTGGTTCGG+CGG | 0.498831 | 4_2:+55699401 | None:intergenic |
| AATGTATATATTACCAGATA+CGG | 0.501138 | 4_2:+55697668 | None:intergenic |
| CAACCCAGTTGTATGCAATA+GGG | 0.501421 | 4_2:+55694396 | None:intergenic |
| TACTGAAAACTATGACATCA+AGG | 0.503788 | 4_2:-55698233 | Msa0608570:CDS |
| CGGTTGTTGTCCATGGTCAA+TGG | 0.505798 | 4_2:+55699430 | None:intergenic |
| GCGTAGTTGTGGAGGATTGT+TGG | 0.509249 | 4_2:+55699349 | None:intergenic |
| ACTTACATCTTCGCAAGTAA+AGG | 0.511759 | 4_2:+55697042 | None:intergenic |
| TACAGAGCGGACTATTCAAC+CGG | 0.511916 | 4_2:-55699201 | Msa0608570:CDS |
| GTCAAAACTGAAAACCGTAT+TGG | 0.515495 | 4_2:-55696397 | Msa0608570:CDS |
| GCGGAGGTGATTGGTGAGGA+TGG | 0.515660 | 4_2:+55699390 | None:intergenic |
| GACGTGCATTCAACATTTGA+GGG | 0.516195 | 4_2:-55696355 | Msa0608570:CDS |
| AGCTAAGGCAAGCGTAGTTG+TGG | 0.516903 | 4_2:+55699338 | None:intergenic |
| CTATGTCTGAGTTGGGCCAT+GGG | 0.517623 | 4_2:-55698201 | Msa0608570:CDS |
| TCGACCGCATGCACTTGCCT+TGG | 0.518895 | 4_2:-55694453 | Msa0608570:CDS |
| GAATTTAACAAATTCTCTCT+GGG | 0.518948 | 4_2:+55697543 | None:intergenic |
| TAGTGACAGTTTCAATTCCT+CGG | 0.521777 | 4_2:+55698066 | None:intergenic |
| ATACTCCTGCAATAAGCTGT+TGG | 0.526263 | 4_2:-55694073 | Msa0608570:three_prime_UTR |
| ACAAGAAGAGTTGAGGAAGT+TGG | 0.529170 | 4_2:-55699041 | Msa0608570:CDS |
| TGGTGGTTCGGCGGGTGATG+CGG | 0.533508 | 4_2:+55699410 | None:intergenic |
| TTGAGGTATTGGATGGGGTG+TGG | 0.533847 | 4_2:-55694315 | Msa0608570:three_prime_UTR |
| GTTCGGGAGGAGAGTAGCTA+AGG | 0.534113 | 4_2:+55699323 | None:intergenic |
| AGAGAATTTGTTAAATTCCG+TGG | 0.536973 | 4_2:-55697538 | Msa0608570:CDS |
| CATGTGATTGAGGTATTGGA+TGG | 0.541833 | 4_2:-55694322 | Msa0608570:three_prime_UTR |
| ATTAATGGATTTCAGGGGCG+GGG | 0.549317 | 4_2:-55698305 | Msa0608570:intron |
| GTCTTCGTCCACACTAATCA+AGG | 0.553624 | 4_2:+55694559 | None:intergenic |
| AATGTGGATAATATTTGTTA+GGG | 0.554004 | 4_2:-55694097 | Msa0608570:three_prime_UTR |
| CAAGTATCCATATCGGAGAA+AGG | 0.554145 | 4_2:+55694532 | None:intergenic |
| ATGGGAAATGTTATCATGCA+AGG | 0.554834 | 4_2:+55699547 | None:intergenic |
| CCCCGAGAGCATAACTCAGT+TGG | 0.555890 | 4_2:+55694123 | None:intergenic |
| TATCAGCTTGCTGAGGACTT+GGG | 0.556480 | 4_2:-55694820 | Msa0608570:CDS |
| AAGTGAATAAGTGGGGTGTG+TGG | 0.556926 | 4_2:-55694189 | Msa0608570:three_prime_UTR |
| TAGAGTCCTCACTAGAATGA+AGG | 0.556973 | 4_2:+55694914 | None:intergenic |
| TGTGATTGAGGTATTGGATG+GGG | 0.557856 | 4_2:-55694320 | Msa0608570:three_prime_UTR |
| AAGATATGCATTGACAAGGC+GGG | 0.561218 | 4_2:-55697136 | Msa0608570:CDS |
| TGCCAACTGAGTTATGCTCT+CGG | 0.562689 | 4_2:-55694125 | Msa0608570:three_prime_UTR |
| TAATCAAGCAGTAAAACCTC+AGG | 0.564610 | 4_2:+55697090 | None:intergenic |
| GCTGAGTCAGCTTTACCAGC+CGG | 0.565138 | 4_2:-55694754 | Msa0608570:CDS |
| CGTGAAGCATGTGGAGGACA+GGG | 0.565627 | 4_2:-55696421 | Msa0608570:CDS |
| CGGGTTTCTGCATGTGATTG+AGG | 0.567793 | 4_2:-55694332 | Msa0608570:three_prime_UTR |
| ATAGGTCTCGCTCTCTTAGG+TGG | 0.569715 | 4_2:+55694997 | None:intergenic |
| GTTAACTGAGATGGGATGAC+AGG | 0.572425 | 4_2:+55695150 | None:intergenic |
| CAGAAAATGCTTCTGTAGTG+AGG | 0.573670 | 4_2:-55694505 | Msa0608570:CDS |
| GTGAATAAGTGGGGTGTGTG+GGG | 0.574655 | 4_2:-55694187 | Msa0608570:three_prime_UTR |
| AGTTGGCATGGATAATGCAT+TGG | 0.574914 | 4_2:+55694140 | None:intergenic |
| GTTATATGCCTTGATTAGTG+TGG | 0.574945 | 4_2:-55694567 | Msa0608570:CDS |
| CAACAATGTTCTGATGCAGC+AGG | 0.578536 | 4_2:-55696329 | Msa0608570:intron |
| GAGGAAGTTGGCTCTTCATG+AGG | 0.581295 | 4_2:-55699029 | Msa0608570:CDS |
| GTGCGGTTGGTGGGTCGTGG+CGG | 0.581343 | 4_2:+55699371 | None:intergenic |
| GTTTCAGAACATCAATCTCA+AGG | 0.581478 | 4_2:-55694954 | Msa0608570:CDS |
| TTTACCTTCAATGAACCGGC+TGG | 0.583384 | 4_2:+55694739 | None:intergenic |
| TTGGTGTTCATATCTTCTTG+TGG | 0.583806 | 4_2:-55698970 | Msa0608570:intron |
| GTTACACGACCAGAGGTCAA+AGG | 0.585021 | 4_2:+55697330 | None:intergenic |
| AGAGCATAACTCAGTTGGCA+TGG | 0.586717 | 4_2:+55694128 | None:intergenic |
| CAGTTCTGTTTACATCTCCA+AGG | 0.586786 | 4_2:-55697298 | Msa0608570:intron |
| TCCTGATTATAATCAGTCCA+TGG | 0.588638 | 4_2:-55699149 | Msa0608570:CDS |
| CAATGCATATCTTATAGCAA+TGG | 0.589002 | 4_2:+55697146 | None:intergenic |
| CAAGAGCTTTCGCATCTCAA+AGG | 0.592095 | 4_2:+55699270 | None:intergenic |
| TAGAACTTGTTAACTGAGAT+GGG | 0.593873 | 4_2:+55695142 | None:intergenic |
| TTCAACCGGCGGGAAGTCGA+CGG | 0.594950 | 4_2:-55699187 | Msa0608570:CDS |
| GAGATGCGAAAGCTCTTGGA+CGG | 0.595446 | 4_2:-55699265 | Msa0608570:CDS |
| ATTGGTATATGCAGGGGTCA+GGG | 0.597775 | 4_2:+55694158 | None:intergenic |
| ACAATCTGGAAGATCGCGAC+TGG | 0.598438 | 4_2:-55699240 | Msa0608570:CDS |
| GAGCGGACTATTCAACCGGC+GGG | 0.599185 | 4_2:-55699197 | Msa0608570:CDS |
| ATGTGATTGAGGTATTGGAT+GGG | 0.599561 | 4_2:-55694321 | Msa0608570:three_prime_UTR |
| ATAGACGTTGTTGATGACTT+GGG | 0.603339 | 4_2:+55697067 | None:intergenic |
| TAGCTCTCAACCACTTGTCA+TGG | 0.605157 | 4_2:+55698254 | None:intergenic |
| GTGGCCGATGTTTCACCAAG+TGG | 0.609777 | 4_2:-55697519 | Msa0608570:CDS |
| TATTACACCAAATGGGCCTG+AGG | 0.613456 | 4_2:-55697106 | Msa0608570:CDS |
| CTCAACATTAATCCCTCATG+CGG | 0.613828 | 4_2:-55694352 | Msa0608570:exon |
| TCAACATTAATCCCTCATGC+GGG | 0.614282 | 4_2:-55694351 | Msa0608570:exon |
| CAGGAATGCCGTGAAGCATG+TGG | 0.614384 | 4_2:-55696430 | Msa0608570:CDS |
| TCAGTCCATGGAACAACAGA+GGG | 0.615909 | 4_2:-55699137 | Msa0608570:CDS |
| GAGCCCTATTGCATACAACT+GGG | 0.618903 | 4_2:-55694399 | Msa0608570:CDS |
| ATAATGCATTGGTATATGCA+GGG | 0.619229 | 4_2:+55694151 | None:intergenic |
| GAGGTGATTGGTGAGGATGG+TGG | 0.620258 | 4_2:+55699393 | None:intergenic |
| GCCCAAATCAGGGATTCAGA+TGG | 0.621638 | 4_2:-55697760 | Msa0608570:CDS |
| TAAGGCAAGCGTAGTTGTGG+AGG | 0.621691 | 4_2:+55699341 | None:intergenic |
| CCGGCGGGAAGTCGACGGCA+GGG | 0.623639 | 4_2:-55699182 | Msa0608570:CDS |
| ATGGCCCACAAGAAGAGTTG+AGG | 0.628054 | 4_2:-55699048 | Msa0608570:CDS |
| CCATGGTCAATGGTTAGAGA+TGG | 0.628588 | 4_2:+55699440 | None:intergenic |
| CCCTGCCGTCGACTTCCCGC+CGG | 0.629419 | 4_2:+55699182 | None:intergenic |
| CTATAAGATATGCATTGACA+AGG | 0.632074 | 4_2:-55697140 | Msa0608570:CDS |
| TCAATCTCAAGGAAATAGCA+AGG | 0.632456 | 4_2:-55694943 | Msa0608570:CDS |
| TACTTCTGAGCTGACTCACA+CGG | 0.633462 | 4_2:+55698005 | None:intergenic |
| CACATGCAGAAACCCGCATG+AGG | 0.634883 | 4_2:+55694339 | None:intergenic |
| CCAACTGAGTTATGCTCTCG+GGG | 0.635021 | 4_2:-55694123 | Msa0608570:three_prime_UTR |
| ACTTGGTGAAACATCGGCCA+CGG | 0.635350 | 4_2:+55697521 | None:intergenic |
| ATTGCGTATTTGTTGGATCG+TGG | 0.635615 | 4_2:-55699097 | Msa0608570:CDS |
| TTCGCCACTTGGTGAAACAT+CGG | 0.637686 | 4_2:+55697515 | None:intergenic |
| CTTCACATACATTACTCCCA+TGG | 0.638446 | 4_2:+55698185 | None:intergenic |
| GCTCAGAAGTATTGGATCGG+TGG | 0.639509 | 4_2:-55697993 | Msa0608570:CDS |
| CATTTCACTTCAGATAAGCA+AGG | 0.640547 | 4_2:-55695256 | Msa0608570:intron |
| AATACTGAAAACATTTATGG+AGG | 0.640785 | 4_2:-55694776 | Msa0608570:CDS |
| ACTGAAAACTATGACATCAA+GGG | 0.641587 | 4_2:-55698232 | Msa0608570:CDS |
| ACGTGCATTCAACATTTGAG+GGG | 0.643157 | 4_2:-55696354 | Msa0608570:CDS |
| ACTCGTAAAAGAACAAATGA+CGG | 0.644530 | 4_2:-55699598 | Msa0608570:five_prime_UTR |
| CCAAGCGTCACCATGACAAG+TGG | 0.645261 | 4_2:-55698264 | Msa0608570:CDS |
| CGTGGCGGAGGTGATTGGTG+AGG | 0.646371 | 4_2:+55699386 | None:intergenic |
| TAATGCATTGGTATATGCAG+GGG | 0.646905 | 4_2:+55694152 | None:intergenic |
| CTAACAAATATTATCCACAT+TGG | 0.648111 | 4_2:+55694099 | None:intergenic |
| TTTGATTCGGAGAGTTCGGG+AGG | 0.650263 | 4_2:+55699310 | None:intergenic |
| CGTGCATTCAACATTTGAGG+GGG | 0.650995 | 4_2:-55696353 | Msa0608570:CDS |
| TCAGCTCAGAAGTATTGGAT+CGG | 0.652959 | 4_2:-55697996 | Msa0608570:CDS |
| GACATGCTATGTATTCTGCA+AGG | 0.654350 | 4_2:+55695229 | None:intergenic |
| ATGTGGCGGGACAGAAGGAG+TGG | 0.657932 | 4_2:-55699631 | None:intergenic |
| TCAATGGTTAGAGATGGTTG+TGG | 0.658220 | 4_2:+55699446 | None:intergenic |
| CCAGAGTTATCAGCTTGCTG+AGG | 0.658447 | 4_2:-55694827 | Msa0608570:intron |
| ACATGCAGAAACCCGCATGA+GGG | 0.659651 | 4_2:+55694340 | None:intergenic |
| GGAGATGTAAACAGAACTGA+CGG | 0.662441 | 4_2:+55697302 | None:intergenic |
| ACATAAACGGAAGCAATCAG+GGG | 0.662941 | 4_2:-55697798 | Msa0608570:CDS |
| AATATCCGAATAGCTGAATG+TGG | 0.664029 | 4_2:-55697724 | Msa0608570:CDS |
| TTAACCAAGGCAAGTGCATG+CGG | 0.664341 | 4_2:+55694449 | None:intergenic |
| TATGCTCTCGGGGACCAATG+TGG | 0.665706 | 4_2:-55694113 | Msa0608570:three_prime_UTR |
| TAAGATATGCATTGACAAGG+CGG | 0.666215 | 4_2:-55697137 | Msa0608570:CDS |
| ATCAGTCCATGGAACAACAG+AGG | 0.666691 | 4_2:-55699138 | Msa0608570:CDS |
| CTTGGATTAGAACATATGAA+CGG | 0.667047 | 4_2:-55695180 | Msa0608570:CDS |
| AAACGCATCAGGAATACCAA+AGG | 0.669563 | 4_2:+55694424 | None:intergenic |
| CCATCTCTAACCATTGACCA+TGG | 0.674433 | 4_2:-55699440 | Msa0608570:exon |
| GAATGCCGTGAAGCATGTGG+AGG | 0.676248 | 4_2:-55696427 | Msa0608570:CDS |
| GGCAATAGTTACACGACCAG+AGG | 0.678714 | 4_2:+55697323 | None:intergenic |
| GTTGTGGAGGATTGTTGGTG+CGG | 0.678862 | 4_2:+55699354 | None:intergenic |
| AGAGCGGACTATTCAACCGG+CGG | 0.689517 | 4_2:-55699198 | Msa0608570:CDS |
| AATACCAAAGGAGTTAACCA+AGG | 0.712604 | 4_2:+55694436 | None:intergenic |
| TACACGACCAGAGGTCAAAG+GGG | 0.719846 | 4_2:+55697332 | None:intergenic |
| CATAAACGGAAGCAATCAGG+GGG | 0.721408 | 4_2:-55697797 | Msa0608570:CDS |
| TTCGGGTTGATGATACAGAG+CGG | 0.759200 | 4_2:-55699214 | Msa0608570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAACTTTAATTTACA+AGG | - | chr4_2:55694912-55694931 | Msa0608570:intron | 10.0% |
| !! | AAAAAAGTTTATTTCAAAAA+TGG | - | chr4_2:55695248-55695267 | Msa0608570:intron | 10.0% |
| !! | AAATAAATTCATTTATTATC+AGG | + | chr4_2:55695973-55695992 | None:intergenic | 10.0% |
| !! | AATTAAAAAAGATATAAAAC+AGG | + | chr4_2:55697965-55697984 | None:intergenic | 10.0% |
| !!! | TAAATTTTAATAGTGAAGTT+TGG | + | chr4_2:55694085-55694104 | None:intergenic | 15.0% |
| !! | ATCATCATAACATAAAAATA+AGG | + | chr4_2:55694673-55694692 | None:intergenic | 15.0% |
| !! | TATAACAAGAAAAAAAATGA+TGG | - | chr4_2:55695182-55695201 | Msa0608570:CDS | 15.0% |
| !!! | TTTGAAATAAACTTTTTTGA+GGG | + | chr4_2:55695246-55695265 | None:intergenic | 15.0% |
| !!! | TTTTGAAATAAACTTTTTTG+AGG | + | chr4_2:55695247-55695266 | None:intergenic | 15.0% |
| !!! | TTTAGTTTCTTTATGATTAA+TGG | - | chr4_2:55695277-55695296 | Msa0608570:intron | 15.0% |
| !! | TAGAAATATTATTAAAGTGA+CGG | + | chr4_2:55695494-55695513 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATTTATGTTCAG+AGG | - | chr4_2:55696701-55696720 | Msa0608570:intron | 15.0% |
| !! | AAAATAGAGAAATAATCATA+TGG | - | chr4_2:55697600-55697619 | Msa0608570:intron | 15.0% |
| !! | AAATAGAGAAATAATCATAT+GGG | - | chr4_2:55697601-55697620 | Msa0608570:intron | 15.0% |
| !!! | GTCTTTCTCTTTTATATTAT+CGG | + | chr4_2:55694730-55694749 | None:intergenic | 20.0% |
| !!! | AGCTTCTTTTATATTTTCTT+AGG | + | chr4_2:55694752-55694771 | None:intergenic | 20.0% |
| !! | AGATTTAGAGATTAATGAAT+TGG | - | chr4_2:55694780-55694799 | Msa0608570:CDS | 20.0% |
| !!! | TAAAGTTTAATTTAAGCATG+TGG | + | chr4_2:55694905-55694924 | None:intergenic | 20.0% |
| !!! | TAAACTTTAATTTACAAGGT+AGG | - | chr4_2:55694916-55694935 | Msa0608570:intron | 20.0% |
| !!! | TTTTAAGTTTGACACATAAT+TGG | - | chr4_2:55694995-55695014 | Msa0608570:CDS | 20.0% |
| !!! | TTGAAATAAACTTTTTTGAG+GGG | + | chr4_2:55695245-55695264 | None:intergenic | 20.0% |
| !!! | TTTATGATTAATGGATTTCA+GGG | - | chr4_2:55695286-55695305 | Msa0608570:intron | 20.0% |
| !! | AAATCATAATAAACTACATG+TGG | + | chr4_2:55695466-55695485 | None:intergenic | 20.0% |
| !! | AGAAATATTATTAAAGTGAC+GGG | + | chr4_2:55695493-55695512 | None:intergenic | 20.0% |
| !! | TATATGTAGTTAGATTGTTT+GGG | - | chr4_2:55695674-55695693 | Msa0608570:intron | 20.0% |
| !! | AATGTATATATTACCAGATA+CGG | + | chr4_2:55695932-55695951 | None:intergenic | 20.0% |
| !! | TAATGTAAGATGTTAAAGTT+TGG | + | chr4_2:55696395-55696414 | None:intergenic | 20.0% |
| !! | GATATAAAATGCATGTATTA+GGG | + | chr4_2:55696582-55696601 | None:intergenic | 20.0% |
| !! | ATCATCAGAAGATATAATAA+TGG | - | chr4_2:55696882-55696901 | Msa0608570:intron | 20.0% |
| !!! | AATTGCATTTTACATTTTAC+TGG | - | chr4_2:55697572-55697591 | Msa0608570:intron | 20.0% |
| !! | AATAAACAATAAGAGTGATA+TGG | + | chr4_2:55697798-55697817 | None:intergenic | 20.0% |
| !!! | TTTTGTTTGTTGTTAAATAG+TGG | - | chr4_2:55698124-55698143 | Msa0608570:intron | 20.0% |
| !! | TACAAAATATTGTGAAATAG+CGG | - | chr4_2:55698212-55698231 | Msa0608570:CDS | 20.0% |
| !! | ACAAAAAACAAACCATTTAA+AGG | - | chr4_2:55698393-55698412 | Msa0608570:intron | 20.0% |
| !! | GTAAATCATATTATTGCTTA+TGG | - | chr4_2:55698876-55698895 | Msa0608570:intron | 20.0% |
| !! | TATTATTCACATTTCCTTAT+TGG | + | chr4_2:55699345-55699364 | None:intergenic | 20.0% |
| !!! | ACTTTTTAAAGTGAATAAGT+GGG | - | chr4_2:55699400-55699419 | Msa0608570:CDS | 20.0% |
| !!! | AATGTGGATAATATTTGTTA+GGG | - | chr4_2:55699500-55699519 | Msa0608570:five_prime_UTR | 20.0% |
| ! | TAATGAATTGGACTGAAATA+TGG | - | chr4_2:55694792-55694811 | Msa0608570:CDS | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | - | chr4_2:55694812-55694831 | Msa0608570:CDS | 25.0% |
| ! | ATTCATAACCCTTCATTTAA+AGG | + | chr4_2:55694972-55694991 | None:intergenic | 25.0% |
| ! | AAGAAACATTTCATTGAACA+AGG | + | chr4_2:55695021-55695040 | None:intergenic | 25.0% |
| !!! | GTTCTTCGTTTTTTATATTG+AGG | - | chr4_2:55695149-55695168 | Msa0608570:CDS | 25.0% |
| ! | GATAAATAAATCATCTAAGG+TGG | + | chr4_2:55695222-55695241 | None:intergenic | 25.0% |
| !!! | TGAAATAAACTTTTTTGAGG+GGG | + | chr4_2:55695244-55695263 | None:intergenic | 25.0% |
| !!! | CTTTATGATTAATGGATTTC+AGG | - | chr4_2:55695285-55695304 | Msa0608570:intron | 25.0% |
| !!! | TTATGATTAATGGATTTCAG+GGG | - | chr4_2:55695287-55695306 | Msa0608570:intron | 25.0% |
| !! | ACTACATATAGGCTTTTAAA+TGG | + | chr4_2:55695664-55695683 | None:intergenic | 25.0% |
| ! | CAAACAATCTAACTACATAT+AGG | + | chr4_2:55695675-55695694 | None:intergenic | 25.0% |
| ! | CTATATGTAGTTAGATTGTT+TGG | - | chr4_2:55695673-55695692 | Msa0608570:intron | 25.0% |
| ! | GAATTTAACAAATTCTCTCT+GGG | + | chr4_2:55696057-55696076 | None:intergenic | 25.0% |
| ! | TGCAATAAAAAATACAGATC+AGG | - | chr4_2:55696113-55696132 | Msa0608570:intron | 25.0% |
| ! | AATGATTCCATCTTTATATG+TGG | - | chr4_2:55696323-55696342 | Msa0608570:intron | 25.0% |
| ! | TTCATATCCACATATAAAGA+TGG | + | chr4_2:55696333-55696352 | None:intergenic | 25.0% |
| ! | ATCTAACAACAGAAAATGAA+AGG | + | chr4_2:55696423-55696442 | None:intergenic | 25.0% |
| ! | GGATATAAAATGCATGTATT+AGG | + | chr4_2:55696583-55696602 | None:intergenic | 25.0% |
| ! | ACCTCATAATAACATTATGA+GGG | + | chr4_2:55696680-55696699 | None:intergenic | 25.0% |
| ! | AACCTCATAATAACATTATG+AGG | + | chr4_2:55696681-55696700 | None:intergenic | 25.0% |
| !! | TGTGATAGATTGTAATTTGT+AGG | - | chr4_2:55697103-55697122 | Msa0608570:CDS | 25.0% |
| !!! | AAACCAGTTTTGAATTGAAA+GGG | + | chr4_2:55697472-55697491 | None:intergenic | 25.0% |
| !!! | AAAACCAGTTTTGAATTGAA+AGG | + | chr4_2:55697473-55697492 | None:intergenic | 25.0% |
| !! | ACTTAACAGTGTTAACTTTT+TGG | - | chr4_2:55697713-55697732 | Msa0608570:CDS | 25.0% |
| ! | TTCTAATCACTTGAACAAAA+AGG | + | chr4_2:55697768-55697787 | None:intergenic | 25.0% |
| ! | AAGTCAAATAGTAATAGACT+GGG | + | chr4_2:55697939-55697958 | None:intergenic | 25.0% |
| ! | ATTGTTCAATACTACTTCAT+GGG | + | chr4_2:55698073-55698092 | None:intergenic | 25.0% |
| ! | AATTGTTCAATACTACTTCA+TGG | + | chr4_2:55698074-55698093 | None:intergenic | 25.0% |
| ! | TAACAACAAACAAAAATGAG+TGG | + | chr4_2:55698119-55698138 | None:intergenic | 25.0% |
| !!! | TATGGATGGATTGAATTTAT+GGG | - | chr4_2:55698313-55698332 | Msa0608570:intron | 25.0% |
| ! | AGCAATACTGAAAACATTTA+TGG | - | chr4_2:55698818-55698837 | Msa0608570:intron | 25.0% |
| ! | AATACTGAAAACATTTATGG+AGG | - | chr4_2:55698821-55698840 | Msa0608570:intron | 25.0% |
| !!! | TAGACTTGTTTTACTTTATC+TGG | + | chr4_2:55698952-55698971 | None:intergenic | 25.0% |
| !! | GTGAATTTTACATACCAATA+AGG | - | chr4_2:55699328-55699347 | Msa0608570:CDS | 25.0% |
| ! | AAAAGTGAATTCTAGTCATT+AGG | + | chr4_2:55699386-55699405 | None:intergenic | 25.0% |
| !!! | CACTTTTTAAAGTGAATAAG+TGG | - | chr4_2:55699399-55699418 | Msa0608570:CDS | 25.0% |
| !!! | CTTTTTAAAGTGAATAAGTG+GGG | - | chr4_2:55699401-55699420 | Msa0608570:CDS | 25.0% |
| ! | CTAACAAATATTATCCACAT+TGG | + | chr4_2:55699501-55699520 | None:intergenic | 25.0% |
| ! | CAATGTGGATAATATTTGTT+AGG | - | chr4_2:55699499-55699518 | Msa0608570:five_prime_UTR | 25.0% |
| ACTCGTAAAAGAACAAATGA+CGG | - | chr4_2:55693999-55694018 | Msa0608570:three_prime_UTR | 30.0% | |
| !! | TAATAGTGAAGTTTGGTGTT+GGG | + | chr4_2:55694078-55694097 | None:intergenic | 30.0% |
| !! | TTAATAGTGAAGTTTGGTGT+TGG | + | chr4_2:55694079-55694098 | None:intergenic | 30.0% |
| GAATGTTGTTGGATTTGATT+CGG | + | chr4_2:55694303-55694322 | None:intergenic | 30.0% | |
| ! | ACTTTAATTTACAAGGTAGG+TGG | - | chr4_2:55694919-55694938 | Msa0608570:intron | 30.0% |
| ATTTAAAGGCTTGAGCTTTA+GGG | + | chr4_2:55694958-55694977 | None:intergenic | 30.0% | |
| !!! | CTTCGTTTTTTATATTGAGG+TGG | - | chr4_2:55695152-55695171 | Msa0608570:CDS | 30.0% |
| GGGGATAAATAAATCATCTA+AGG | + | chr4_2:55695225-55695244 | None:intergenic | 30.0% | |
| TACTGAAAACTATGACATCA+AGG | - | chr4_2:55695364-55695383 | Msa0608570:intron | 30.0% | |
| ACTGAAAACTATGACATCAA+GGG | - | chr4_2:55695365-55695384 | Msa0608570:intron | 30.0% | |
| !!! | ATTTCTAGAGTGATTTTCAC+AGG | - | chr4_2:55695507-55695526 | Msa0608570:intron | 30.0% |
| ACTACTTATGATCCAAATTC+TGG | - | chr4_2:55695550-55695569 | Msa0608570:intron | 30.0% | |
| ! | TTTTCACAGCTCAACATAAA+CGG | - | chr4_2:55695786-55695805 | Msa0608570:intron | 30.0% |
| ATTCAGCTATTCGGATATTT+GGG | + | chr4_2:55695872-55695891 | None:intergenic | 30.0% | |
| ! | GGTCACAAAATTGGTTTAAA+TGG | - | chr4_2:55695894-55695913 | Msa0608570:intron | 30.0% |
| !! | GGTTTAAATGGAGTTGATAA+TGG | - | chr4_2:55695906-55695925 | Msa0608570:intron | 30.0% |
| AAATGAGTAAACTCAAGTTC+TGG | - | chr4_2:55695994-55696013 | Msa0608570:intron | 30.0% | |
| GGAATTTAACAAATTCTCTC+TGG | + | chr4_2:55696058-55696077 | None:intergenic | 30.0% | |
| !! | AGAGAATTTGTTAAATTCCG+TGG | - | chr4_2:55696059-55696078 | Msa0608570:intron | 30.0% |
| GTGTAAGCAAACTTTGTAAT+TGG | + | chr4_2:55696197-55696216 | None:intergenic | 30.0% | |
| TAAAGATGGAATCATTACCT+TGG | + | chr4_2:55696319-55696338 | None:intergenic | 30.0% | |
| CAATGCATATCTTATAGCAA+TGG | + | chr4_2:55696454-55696473 | None:intergenic | 30.0% | |
| ! | CTATAAGATATGCATTGACA+AGG | - | chr4_2:55696457-55696476 | Msa0608570:intron | 30.0% |
| ! | CCTTTTCTATTACACCAAAT+GGG | - | chr4_2:55696484-55696503 | Msa0608570:intron | 30.0% |
| !!! | TTTTATATCCATTTGCTGTG+AGG | - | chr4_2:55696593-55696612 | Msa0608570:CDS | 30.0% |
| CAATGTGATTCAAATCCTTT+AGG | - | chr4_2:55696619-55696638 | Msa0608570:CDS | 30.0% | |
| TCCCTCATAATGTTATTATG+AGG | - | chr4_2:55696676-55696695 | Msa0608570:intron | 30.0% | |
| TTATATCAAATGCTTTCGTC+TGG | + | chr4_2:55696753-55696772 | None:intergenic | 30.0% | |
| TATCTTCTGATGATCAAACT+AGG | + | chr4_2:55696876-55696895 | None:intergenic | 30.0% | |
| GTAAGGAGATTAACATAAAC+AGG | + | chr4_2:55696909-55696928 | None:intergenic | 30.0% | |
| !! | TATTGTTTCTAGTGCATACA+AGG | - | chr4_2:55697018-55697037 | Msa0608570:intron | 30.0% |
| TGGATTGCTATCATTATACT+TGG | - | chr4_2:55697079-55697098 | Msa0608570:CDS | 30.0% | |
| GGATTGCTATCATTATACTT+GGG | - | chr4_2:55697080-55697099 | Msa0608570:CDS | 30.0% | |
| ATTGTACTAATGCATGAATC+AGG | - | chr4_2:55697148-55697167 | Msa0608570:CDS | 30.0% | |
| ! | AAACCGTATTGGTCAATTTA+AGG | - | chr4_2:55697211-55697230 | Msa0608570:intron | 30.0% |
| ! | AACCGTATTGGTCAATTTAA+GGG | - | chr4_2:55697212-55697231 | Msa0608570:intron | 30.0% |
| AGTGAAGAATCATTCTTTGT+AGG | - | chr4_2:55697392-55697411 | Msa0608570:intron | 30.0% | |
| TTTCATATTCAAACAGTGCA+CGG | + | chr4_2:55697446-55697465 | None:intergenic | 30.0% | |
| !!! | AACCAGTTTTGAATTGAAAG+GGG | + | chr4_2:55697471-55697490 | None:intergenic | 30.0% |
| ! | TGCATTTTACATTTTACTGG+TGG | - | chr4_2:55697575-55697594 | Msa0608570:intron | 30.0% |
| ! | TTGGAGATAAAACCTACTTT+TGG | - | chr4_2:55697685-55697704 | Msa0608570:CDS | 30.0% |
| AAGTTAACACTGTTAAGTGA+AGG | + | chr4_2:55697711-55697730 | None:intergenic | 30.0% | |
| ! | GTGTTAACTTTTTGGATGAT+TGG | - | chr4_2:55697721-55697740 | Msa0608570:CDS | 30.0% |
| AGATTTCAGCTAAAACATAC+TGG | - | chr4_2:55697823-55697842 | Msa0608570:CDS | 30.0% | |
| CAAGTCAAATAGTAATAGAC+TGG | + | chr4_2:55697940-55697959 | None:intergenic | 30.0% | |
| TTGTTCAATACTACTTCATG+GGG | + | chr4_2:55698072-55698091 | None:intergenic | 30.0% | |
| AATAGCGAATCACATAACAA+TGG | + | chr4_2:55698190-55698209 | None:intergenic | 30.0% | |
| !! | CTATGGATGGATTGAATTTA+TGG | - | chr4_2:55698312-55698331 | Msa0608570:intron | 30.0% |
| AACAAACCATTTAAAGGTCT+TGG | - | chr4_2:55698399-55698418 | Msa0608570:intron | 30.0% | |
| TCTAATCCAAGACCTTTAAA+TGG | + | chr4_2:55698408-55698427 | None:intergenic | 30.0% | |
| ! | CTTGGATTAGAACATATGAA+CGG | - | chr4_2:55698417-55698436 | Msa0608570:intron | 30.0% |
| !! | TAGAACTTGTTAACTGAGAT+GGG | + | chr4_2:55698458-55698477 | None:intergenic | 30.0% |
| AGGTCATTACAAATATCAAC+AGG | + | chr4_2:55698524-55698543 | None:intergenic | 30.0% | |
| TGTTGATATTTGTAATGACC+TGG | - | chr4_2:55698523-55698542 | Msa0608570:intron | 30.0% | |
| CTATAGCAAAACGTTTCAAT+AGG | + | chr4_2:55698621-55698640 | None:intergenic | 30.0% | |
| !! | ATTGAAACGTTTTGCTATAG+AGG | - | chr4_2:55698621-55698640 | Msa0608570:intron | 30.0% |
| ATGATTTACCTTCAATGAAC+CGG | + | chr4_2:55698865-55698884 | None:intergenic | 30.0% | |
| ! | ATAATGCATTGGTATATGCA+GGG | + | chr4_2:55699449-55699468 | None:intergenic | 30.0% |
| ! | GATCTGATGAATACTTTTAC+TGG | - | chr4_2:55699553-55699572 | Msa0608570:five_prime_UTR | 30.0% |
| ATGGGAAATGTTATCATGCA+AGG | + | chr4_2:55694053-55694072 | None:intergenic | 35.0% | |
| !!! | ATAGCGTGTGTTTTGGAATT+TGG | + | chr4_2:55694120-55694139 | None:intergenic | 35.0% |
| TCCTGATTATAATCAGTCCA+TGG | - | chr4_2:55694448-55694467 | Msa0608570:CDS | 35.0% | |
| ! | TCCATGGACTGATTATAATC+AGG | + | chr4_2:55694452-55694471 | None:intergenic | 35.0% |
| CAAATACGCAATTCGTTTCA+TGG | + | chr4_2:55694492-55694511 | None:intergenic | 35.0% | |
| GAAACGAATTGCGTATTTGT+TGG | - | chr4_2:55694493-55694512 | Msa0608570:CDS | 35.0% | |
| ! | TTGGTGTTCATATCTTCTTG+TGG | - | chr4_2:55694627-55694646 | Msa0608570:intron | 35.0% |
| !! | ATTATCGGTGTCAATGTGTA+GGG | + | chr4_2:55694715-55694734 | None:intergenic | 35.0% |
| !! | TATTATCGGTGTCAATGTGT+AGG | + | chr4_2:55694716-55694735 | None:intergenic | 35.0% |
| CATTTAAAGGCTTGAGCTTT+AGG | + | chr4_2:55694959-55694978 | None:intergenic | 35.0% | |
| AAGCTCAAGCCTTTAAATGA+AGG | - | chr4_2:55694960-55694979 | Msa0608570:CDS | 35.0% | |
| AGCTCAAGCCTTTAAATGAA+GGG | - | chr4_2:55694961-55694980 | Msa0608570:CDS | 35.0% | |
| TTCTTGCTTGACAAATTTCC+TGG | - | chr4_2:55695036-55695055 | Msa0608570:intron | 35.0% | |
| TCACATCAAATTATACGTCC+AGG | + | chr4_2:55695057-55695076 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCTATGTCTGAGT+TGG | - | chr4_2:55695388-55695407 | Msa0608570:intron | 35.0% |
| !! | TGTTTTGCTATGTCTGAGTT+GGG | - | chr4_2:55695389-55695408 | Msa0608570:intron | 35.0% |
| CTCAATAGGATGTGATTGTT+AGG | - | chr4_2:55695439-55695458 | Msa0608570:intron | 35.0% | |
| TAGTGACAGTTTCAATTCCT+CGG | + | chr4_2:55695534-55695553 | None:intergenic | 35.0% | |
| ATGACAAACTCACCAGAATT+TGG | + | chr4_2:55695565-55695584 | None:intergenic | 35.0% | |
| AACATAAACGGAAGCAATCA+GGG | - | chr4_2:55695798-55695817 | Msa0608570:intron | 35.0% | |
| ! | ATGCTTTTATTGCCCAAATC+AGG | - | chr4_2:55695826-55695845 | Msa0608570:intron | 35.0% |
| ! | TGCTTTTATTGCCCAAATCA+GGG | - | chr4_2:55695827-55695846 | Msa0608570:intron | 35.0% |
| CATTCAGCTATTCGGATATT+TGG | + | chr4_2:55695873-55695892 | None:intergenic | 35.0% | |
| AATATCCGAATAGCTGAATG+TGG | - | chr4_2:55695873-55695892 | Msa0608570:intron | 35.0% | |
| !!! | TGATTGCTTTTTCTGAGAGT+TGG | - | chr4_2:55696136-55696155 | Msa0608570:intron | 35.0% |
| ! | TAAGATATGCATTGACAAGG+CGG | - | chr4_2:55696460-55696479 | Msa0608570:intron | 35.0% |
| ! | GCCTTTTCTATTACACCAAA+TGG | - | chr4_2:55696483-55696502 | Msa0608570:intron | 35.0% |
| !! | CCCATTTGGTGTAATAGAAA+AGG | + | chr4_2:55696487-55696506 | None:intergenic | 35.0% |
| TAATCAAGCAGTAAAACCTC+AGG | + | chr4_2:55696510-55696529 | None:intergenic | 35.0% | |
| !! | ATAGACGTTGTTGATGACTT+GGG | + | chr4_2:55696533-55696552 | None:intergenic | 35.0% |
| !! | AATAGACGTTGTTGATGACT+TGG | + | chr4_2:55696534-55696553 | None:intergenic | 35.0% |
| ACTTACATCTTCGCAAGTAA+AGG | + | chr4_2:55696558-55696577 | None:intergenic | 35.0% | |
| ! | TCCTTTAGGAACCAAAACTT+AGG | - | chr4_2:55696633-55696652 | Msa0608570:CDS | 35.0% |
| !!! | ACCTAAGTTTTGGTTCCTAA+AGG | + | chr4_2:55696637-55696656 | None:intergenic | 35.0% |
| ! | AAAGTGGCATACCTAAGTTT+TGG | + | chr4_2:55696647-55696666 | None:intergenic | 35.0% |
| TGAGGGACATATACTAAAAG+TGG | + | chr4_2:55696663-55696682 | None:intergenic | 35.0% | |
| AAATGCTTTCGTCTGGAAAT+TGG | + | chr4_2:55696746-55696765 | None:intergenic | 35.0% | |
| !! | TGAATTGCTTTGTTTGACTC+AGG | + | chr4_2:55696998-55697017 | None:intergenic | 35.0% |
| !!! | CATACAAGGCTACTTTTACA+TGG | - | chr4_2:55697032-55697051 | Msa0608570:intron | 35.0% |
| GAATAATATGCGTACTCTTC+AGG | - | chr4_2:55697054-55697073 | Msa0608570:CDS | 35.0% | |
| ! | GATTGTAATTTGTAGGCTAC+TGG | - | chr4_2:55697110-55697129 | Msa0608570:CDS | 35.0% |
| AGTACAATACAACCTTAGTG+AGG | + | chr4_2:55697136-55697155 | None:intergenic | 35.0% | |
| GTCAAAACTGAAAACCGTAT+TGG | - | chr4_2:55697200-55697219 | Msa0608570:intron | 35.0% | |
| CACCCTTAAATTGACCAATA+CGG | + | chr4_2:55697217-55697236 | None:intergenic | 35.0% | |
| AACAATGTATGAAGTGTAGC+AGG | - | chr4_2:55697324-55697343 | Msa0608570:CDS | 35.0% | |
| GAAGAATCATTCTTTGTAGG+AGG | - | chr4_2:55697395-55697414 | Msa0608570:intron | 35.0% | |
| ! | TAAAAACAGATCTAGAGCCT+AGG | + | chr4_2:55697421-55697440 | None:intergenic | 35.0% |
| TTCCCCTTTCAATTCAAAAC+TGG | - | chr4_2:55697466-55697485 | Msa0608570:intron | 35.0% | |
| ATTCAACTCTTGAGAGTAAC+TGG | - | chr4_2:55697624-55697643 | Msa0608570:intron | 35.0% | |
| TTCAACTCTTGAGAGTAACT+GGG | - | chr4_2:55697625-55697644 | Msa0608570:intron | 35.0% | |
| TTCAGCTAAAACATACTGGT+AGG | - | chr4_2:55697827-55697846 | Msa0608570:CDS | 35.0% | |
| TCTCATGTGAAATTCCTTTC+GGG | + | chr4_2:55697875-55697894 | None:intergenic | 35.0% | |
| CTCTCATGTGAAATTCCTTT+CGG | + | chr4_2:55697876-55697895 | None:intergenic | 35.0% | |
| AAGGAATTTCACATGAGAGA+TGG | - | chr4_2:55697877-55697896 | Msa0608570:intron | 35.0% | |
| AAATGGGAAATTGTCATCTC+TGG | + | chr4_2:55697996-55698015 | None:intergenic | 35.0% | |
| TTTCCCATTTATGATATCCG+TGG | - | chr4_2:55698006-55698025 | Msa0608570:CDS | 35.0% | |
| AGTCCACGGATATCATAAAT+GGG | + | chr4_2:55698012-55698031 | None:intergenic | 35.0% | |
| AAGTCCACGGATATCATAAA+TGG | + | chr4_2:55698013-55698032 | None:intergenic | 35.0% | |
| ATCCATAGTGTTGTCAATTG+CGG | + | chr4_2:55698300-55698319 | None:intergenic | 35.0% | |
| CATTTCACTTCAGATAAGCA+AGG | - | chr4_2:55698341-55698360 | Msa0608570:intron | 35.0% | |
| !! | GTAGAACTTGTTAACTGAGA+TGG | + | chr4_2:55698459-55698478 | None:intergenic | 35.0% |
| GATATTTGTAATGACCTGGT+TGG | - | chr4_2:55698527-55698546 | Msa0608570:intron | 35.0% | |
| GATCAATCTGTGTAAATGAG+AGG | + | chr4_2:55698576-55698595 | None:intergenic | 35.0% | |
| GTTTCAGAACATCAATCTCA+AGG | - | chr4_2:55698643-55698662 | Msa0608570:intron | 35.0% | |
| TCAATCTCAAGGAAATAGCA+AGG | - | chr4_2:55698654-55698673 | Msa0608570:intron | 35.0% | |
| GTTATATGCCTTGATTAGTG+TGG | - | chr4_2:55699030-55699049 | Msa0608570:CDS | 35.0% | |
| CTGTTGACAAGTATCCATAT+CGG | + | chr4_2:55699075-55699094 | None:intergenic | 35.0% | |
| AATACCAAAGGAGTTAACCA+AGG | + | chr4_2:55699164-55699183 | None:intergenic | 35.0% | |
| !! | ATGTGATTGAGGTATTGGAT+GGG | - | chr4_2:55699276-55699295 | Msa0608570:CDS | 35.0% |
| ! | TAATGCATTGGTATATGCAG+GGG | + | chr4_2:55699448-55699467 | None:intergenic | 35.0% |
| ! | GATAATGCATTGGTATATGC+AGG | + | chr4_2:55699450-55699469 | None:intergenic | 35.0% |
| !! | GAAGTTTGGTGTTGGGAAAT+GGG | + | chr4_2:55694071-55694090 | None:intergenic | 40.0% |
| !! | TGAAGTTTGGTGTTGGGAAA+TGG | + | chr4_2:55694072-55694091 | None:intergenic | 40.0% |
| ! | GATGAAGATAGCGTGTGTTT+TGG | + | chr4_2:55694127-55694146 | None:intergenic | 40.0% |
| TCAATGGTTAGAGATGGTTG+TGG | + | chr4_2:55694154-55694173 | None:intergenic | 40.0% | |
| !! | TGGATTTGATTCGGAGAGTT+CGG | + | chr4_2:55694294-55694313 | None:intergenic | 40.0% |
| !! | TCAAAGGTGTCGAATGTTGT+TGG | + | chr4_2:55694314-55694333 | None:intergenic | 40.0% |
| ! | ATTGCGTATTTGTTGGATCG+TGG | - | chr4_2:55694500-55694519 | Msa0608570:CDS | 40.0% |
| ACTTCCTCAACTCTTCTTGT+GGG | + | chr4_2:55694556-55694575 | None:intergenic | 40.0% | |
| AACTTCCTCAACTCTTCTTG+TGG | + | chr4_2:55694557-55694576 | None:intergenic | 40.0% | |
| ACAAGAAGAGTTGAGGAAGT+TGG | - | chr4_2:55694556-55694575 | Msa0608570:CDS | 40.0% | |
| ! | TTGGCTCTTCATGAGGTTAT+TGG | - | chr4_2:55694575-55694594 | Msa0608570:CDS | 40.0% |
| !! | CATTCTCTTGCTGTTAAGCT+TGG | - | chr4_2:55694608-55694627 | Msa0608570:intron | 40.0% |
| ATAAGGTAGAGAGAGAGAGA+GGG | + | chr4_2:55694656-55694675 | None:intergenic | 40.0% | |
| AATAAGGTAGAGAGAGAGAG+AGG | + | chr4_2:55694657-55694676 | None:intergenic | 40.0% | |
| ATTTAAGCATGTGGCAGCTT+TGG | + | chr4_2:55694896-55694915 | None:intergenic | 40.0% | |
| !! | TGATTAATGGATTTCAGGGG+CGG | - | chr4_2:55695290-55695309 | Msa0608570:intron | 40.0% |
| CTTCACATACATTACTCCCA+TGG | + | chr4_2:55695415-55695434 | None:intergenic | 40.0% | |
| CATGGGAGTAATGTATGTGA+AGG | - | chr4_2:55695413-55695432 | Msa0608570:intron | 40.0% | |
| !! | TCAGCTCAGAAGTATTGGAT+CGG | - | chr4_2:55695601-55695620 | Msa0608570:intron | 40.0% |
| CAACATAAACGGAAGCAATC+AGG | - | chr4_2:55695797-55695816 | Msa0608570:intron | 40.0% | |
| ACATAAACGGAAGCAATCAG+GGG | - | chr4_2:55695799-55695818 | Msa0608570:intron | 40.0% | |
| TCCATCTGAATCCCTGATTT+GGG | + | chr4_2:55695841-55695860 | None:intergenic | 40.0% | |
| TTCCATCTGAATCCCTGATT+TGG | + | chr4_2:55695842-55695861 | None:intergenic | 40.0% | |
| TGTGACCACATTCAGCTATT+CGG | + | chr4_2:55695881-55695900 | None:intergenic | 40.0% | |
| GCTGAATGTGGTCACAAAAT+TGG | - | chr4_2:55695885-55695904 | Msa0608570:intron | 40.0% | |
| GGAGATGTAAACAGAACTGA+CGG | + | chr4_2:55696298-55696317 | None:intergenic | 40.0% | |
| CAGTTCTGTTTACATCTCCA+AGG | - | chr4_2:55696299-55696318 | Msa0608570:intron | 40.0% | |
| ! | AAGATATGCATTGACAAGGC+GGG | - | chr4_2:55696461-55696480 | Msa0608570:intron | 40.0% |
| CATTGAATCCTCACAGCAAA+TGG | + | chr4_2:55696604-55696623 | None:intergenic | 40.0% | |
| AACAACATATATGAGCCGCA+GGG | + | chr4_2:55696809-55696828 | None:intergenic | 40.0% | |
| TAACAACATATATGAGCCGC+AGG | + | chr4_2:55696810-55696829 | None:intergenic | 40.0% | |
| TGCGGCTCATATATGTTGTT+AGG | - | chr4_2:55696809-55696828 | Msa0608570:intron | 40.0% | |
| GCATATCTGTAGAAGACGTA+AGG | + | chr4_2:55696926-55696945 | None:intergenic | 40.0% | |
| ATATGCGTACTCTTCAGGTA+TGG | - | chr4_2:55697059-55697078 | Msa0608570:CDS | 40.0% | |
| TGACGTGCATTCAACATTTG+AGG | - | chr4_2:55697241-55697260 | Msa0608570:intron | 40.0% | |
| GACGTGCATTCAACATTTGA+GGG | - | chr4_2:55697242-55697261 | Msa0608570:intron | 40.0% | |
| ACGTGCATTCAACATTTGAG+GGG | - | chr4_2:55697243-55697262 | Msa0608570:intron | 40.0% | |
| AGTAGGAGTTATGTGTGAAG+TGG | - | chr4_2:55697356-55697375 | Msa0608570:intron | 40.0% | |
| TTTCTGCCAAATTCAAGCCT+AGG | - | chr4_2:55697490-55697509 | Msa0608570:CDS | 40.0% | |
| ATGTCTCCTAGGCTTGAATT+TGG | + | chr4_2:55697499-55697518 | None:intergenic | 40.0% | |
| AGACACATCATATGTCTCCT+AGG | + | chr4_2:55697510-55697529 | None:intergenic | 40.0% | |
| TCAACTCTTGAGAGTAACTG+GGG | - | chr4_2:55697626-55697645 | Msa0608570:intron | 40.0% | |
| ! | GCTACTTCGTTTGAGTTTGT+TGG | - | chr4_2:55697666-55697685 | Msa0608570:intron | 40.0% |
| GTTAAGTGAAGGCCAAAAGT+AGG | + | chr4_2:55697700-55697719 | None:intergenic | 40.0% | |
| GACTAAGCATGACAAAGCAT+AGG | + | chr4_2:55697853-55697872 | None:intergenic | 40.0% | |
| ! | GGAAATTGTCATCTCTGGAA+AGG | + | chr4_2:55697991-55698010 | None:intergenic | 40.0% |
| AAGTCAATCGACAAAGTCCA+CGG | + | chr4_2:55698026-55698045 | None:intergenic | 40.0% | |
| TTGCGGATCGCATAAAATAG+CGG | + | chr4_2:55698283-55698302 | None:intergenic | 40.0% | |
| ATCCGCAATTGACAACACTA+TGG | - | chr4_2:55698295-55698314 | Msa0608570:intron | 40.0% | |
| GCAATTGACAACACTATGGA+TGG | - | chr4_2:55698299-55698318 | Msa0608570:intron | 40.0% | |
| GACATGCTATGTATTCTGCA+AGG | + | chr4_2:55698371-55698390 | None:intergenic | 40.0% | |
| CTGAAATTCACTGCTCTTGA+TGG | + | chr4_2:55698481-55698500 | None:intergenic | 40.0% | |
| CATCAAGAGCAGTGAATTTC+AGG | - | chr4_2:55698479-55698498 | Msa0608570:intron | 40.0% | |
| TAGAGTCCTCACTAGAATGA+AGG | + | chr4_2:55698686-55698705 | None:intergenic | 40.0% | |
| CAAGTATCCATATCGGAGAA+AGG | + | chr4_2:55699068-55699087 | None:intergenic | 40.0% | |
| CAGAAAATGCTTCTGTAGTG+AGG | - | chr4_2:55699092-55699111 | Msa0608570:CDS | 40.0% | |
| AAACGCATCAGGAATACCAA+AGG | + | chr4_2:55699176-55699195 | None:intergenic | 40.0% | |
| CAACCCAGTTGTATGCAATA+GGG | + | chr4_2:55699204-55699223 | None:intergenic | 40.0% | |
| TCAACCCAGTTGTATGCAAT+AGG | + | chr4_2:55699205-55699224 | None:intergenic | 40.0% | |
| ! | ACTGGGTTGAGTCAAATTCT+TGG | - | chr4_2:55699215-55699234 | Msa0608570:CDS | 40.0% |
| CTCAACATTAATCCCTCATG+CGG | - | chr4_2:55699245-55699264 | Msa0608570:CDS | 40.0% | |
| TCAACATTAATCCCTCATGC+GGG | - | chr4_2:55699246-55699265 | Msa0608570:CDS | 40.0% | |
| TCTGCATGTGATTGAGGTAT+TGG | - | chr4_2:55699271-55699290 | Msa0608570:CDS | 40.0% | |
| !! | CATGTGATTGAGGTATTGGA+TGG | - | chr4_2:55699275-55699294 | Msa0608570:CDS | 40.0% |
| !! | TGTGATTGAGGTATTGGATG+GGG | - | chr4_2:55699277-55699296 | Msa0608570:CDS | 40.0% |
| AGTTGGCATGGATAATGCAT+TGG | + | chr4_2:55699460-55699479 | None:intergenic | 40.0% | |
| ATACTCCTGCAATAAGCTGT+TGG | - | chr4_2:55699524-55699543 | Msa0608570:five_prime_UTR | 40.0% | |
| GAATTCCAACAGCTTATTGC+AGG | + | chr4_2:55699532-55699551 | None:intergenic | 40.0% | |
| CCATGGTCAATGGTTAGAGA+TGG | + | chr4_2:55694160-55694179 | None:intergenic | 45.0% | |
| CCATCTCTAACCATTGACCA+TGG | - | chr4_2:55694157-55694176 | Msa0608570:three_prime_UTR | 45.0% | |
| !! | GGATTTGATTCGGAGAGTTC+GGG | + | chr4_2:55694293-55694312 | None:intergenic | 45.0% |
| CAAGAGCTTTCGCATCTCAA+AGG | + | chr4_2:55694330-55694349 | None:intergenic | 45.0% | |
| !! | CTTTGAGATGCGAAAGCTCT+TGG | - | chr4_2:55694328-55694347 | Msa0608570:three_prime_UTR | 45.0% |
| !! | TTCGGGTTGATGATACAGAG+CGG | - | chr4_2:55694383-55694402 | Msa0608570:CDS | 45.0% |
| !! | TACAGAGCGGACTATTCAAC+CGG | - | chr4_2:55694396-55694415 | Msa0608570:CDS | 45.0% |
| ATCAGTCCATGGAACAACAG+AGG | - | chr4_2:55694459-55694478 | Msa0608570:CDS | 45.0% | |
| TCAGTCCATGGAACAACAGA+GGG | - | chr4_2:55694460-55694479 | Msa0608570:CDS | 45.0% | |
| ! | TTGGATCGTGGTGTTTTTCG+TGG | - | chr4_2:55694512-55694531 | Msa0608570:CDS | 45.0% |
| ! | TGGATCGTGGTGTTTTTCGT+GGG | - | chr4_2:55694513-55694532 | Msa0608570:CDS | 45.0% |
| TAAGGTAGAGAGAGAGAGAG+GGG | + | chr4_2:55694655-55694674 | None:intergenic | 45.0% | |
| AACAACCAAGCCACTAAGTG+GGG | + | chr4_2:55694860-55694879 | None:intergenic | 45.0% | |
| CAACAACCAAGCCACTAAGT+GGG | + | chr4_2:55694861-55694880 | None:intergenic | 45.0% | |
| ACAACAACCAAGCCACTAAG+TGG | + | chr4_2:55694862-55694881 | None:intergenic | 45.0% | |
| !! | ACTTAGTGGCTTGGTTGTTG+TGG | - | chr4_2:55694861-55694880 | Msa0608570:intron | 45.0% |
| !! | GATTAATGGATTTCAGGGGC+GGG | - | chr4_2:55695291-55695310 | Msa0608570:intron | 45.0% |
| !! | ATTAATGGATTTCAGGGGCG+GGG | - | chr4_2:55695292-55695311 | Msa0608570:intron | 45.0% |
| TAGCTCTCAACCACTTGTCA+TGG | + | chr4_2:55695346-55695365 | None:intergenic | 45.0% | |
| GTATGTGAAGGCTGCTCAAT+AGG | - | chr4_2:55695425-55695444 | Msa0608570:intron | 45.0% | |
| ! | TACTTCTGAGCTGACTCACA+CGG | + | chr4_2:55695595-55695614 | None:intergenic | 45.0% |
| ! | GTGAGTCAGCTCAGAAGTAT+TGG | - | chr4_2:55695596-55695615 | Msa0608570:intron | 45.0% |
| CATAAACGGAAGCAATCAGG+GGG | - | chr4_2:55695800-55695819 | Msa0608570:intron | 45.0% | |
| !! | GAGTTGATAATGGCCGTATC+TGG | - | chr4_2:55695916-55695935 | Msa0608570:intron | 45.0% |
| ! | GAGTAAACTCAAGTTCTGGC+TGG | - | chr4_2:55695998-55696017 | Msa0608570:intron | 45.0% |
| ! | TTCGCCACTTGGTGAAACAT+CGG | + | chr4_2:55696085-55696104 | None:intergenic | 45.0% |
| CTAAGAATGCTGCAAACCTC+TGG | + | chr4_2:55696245-55696264 | None:intergenic | 45.0% | |
| TTACACGACCAGAGGTCAAA+GGG | + | chr4_2:55696269-55696288 | None:intergenic | 45.0% | |
| TATTACACCAAATGGGCCTG+AGG | - | chr4_2:55696491-55696510 | Msa0608570:intron | 45.0% | |
| AGTAAAACCTCAGGCCCATT+TGG | + | chr4_2:55696501-55696520 | None:intergenic | 45.0% | |
| CAAAATAAACACCTGCCCTG+CGG | - | chr4_2:55696791-55696810 | Msa0608570:intron | 45.0% | |
| CGTGCATTCAACATTTGAGG+GGG | - | chr4_2:55697244-55697263 | Msa0608570:intron | 45.0% | |
| CAACAATGTTCTGATGCAGC+AGG | - | chr4_2:55697268-55697287 | Msa0608570:intron | 45.0% | |
| TCATTCTTTGTAGGAGGCCT+AGG | - | chr4_2:55697401-55697420 | Msa0608570:intron | 45.0% | |
| TTGTCATGCTTAGTCCCGAA+AGG | - | chr4_2:55697858-55697877 | Msa0608570:intron | 45.0% | |
| GTTAACTGAGATGGGATGAC+AGG | + | chr4_2:55698450-55698469 | None:intergenic | 45.0% | |
| GATAGAAGCTTCTACCAACC+AGG | + | chr4_2:55698544-55698563 | None:intergenic | 45.0% | |
| TCAATAGGTCTCGCTCTCTT+AGG | + | chr4_2:55698606-55698625 | None:intergenic | 45.0% | |
| AGTCTGCCTTCATTCTAGTG+AGG | - | chr4_2:55698677-55698696 | Msa0608570:intron | 45.0% | |
| !! | TTATCAGCTTGCTGAGGACT+TGG | - | chr4_2:55698776-55698795 | Msa0608570:intron | 45.0% |
| !! | TATCAGCTTGCTGAGGACTT+GGG | - | chr4_2:55698777-55698796 | Msa0608570:intron | 45.0% |
| ! | TTTACCAGCCGGTTCATTGA+AGG | - | chr4_2:55698854-55698873 | Msa0608570:intron | 45.0% |
| TTTACCTTCAATGAACCGGC+TGG | + | chr4_2:55698861-55698880 | None:intergenic | 45.0% | |
| ! | TTGCATTTTGTCTCCTCTGC+AGG | - | chr4_2:55698985-55699004 | Msa0608570:CDS | 45.0% |
| GTCTTCGTCCACACTAATCA+AGG | + | chr4_2:55699041-55699060 | None:intergenic | 45.0% | |
| CGAAGTTCAGCACATAGCTT+TGG | + | chr4_2:55699127-55699146 | None:intergenic | 45.0% | |
| TTAACCAAGGCAAGTGCATG+CGG | + | chr4_2:55699151-55699170 | None:intergenic | 45.0% | |
| CTTGCCTTGGTTAACTCCTT+TGG | - | chr4_2:55699157-55699176 | Msa0608570:CDS | 45.0% | |
| ATAGGGCTCAAAAACGCATC+AGG | + | chr4_2:55699187-55699206 | None:intergenic | 45.0% | |
| TGAGCCCTATTGCATACAAC+TGG | - | chr4_2:55699197-55699216 | Msa0608570:CDS | 45.0% | |
| GAGCCCTATTGCATACAACT+GGG | - | chr4_2:55699198-55699217 | Msa0608570:CDS | 45.0% | |
| AAGTGAATAAGTGGGGTGTG+TGG | - | chr4_2:55699408-55699427 | Msa0608570:CDS | 45.0% | |
| AGTGAATAAGTGGGGTGTGT+GGG | - | chr4_2:55699409-55699428 | Msa0608570:CDS | 45.0% | |
| ATTGGTATATGCAGGGGTCA+GGG | + | chr4_2:55699442-55699461 | None:intergenic | 45.0% | |
| AGAGCATAACTCAGTTGGCA+TGG | + | chr4_2:55699472-55699491 | None:intergenic | 45.0% | |
| TGCCAACTGAGTTATGCTCT+CGG | - | chr4_2:55699472-55699491 | Msa0608570:five_prime_UTR | 45.0% | |
| CGGTTGTTGTCCATGGTCAA+TGG | + | chr4_2:55694170-55694189 | None:intergenic | 50.0% | |
| ! | GATTGGTGAGGATGGTGGTT+CGG | + | chr4_2:55694202-55694221 | None:intergenic | 50.0% |
| GTTGTGGAGGATTGTTGGTG+CGG | + | chr4_2:55694246-55694265 | None:intergenic | 50.0% | |
| GCGTAGTTGTGGAGGATTGT+TGG | + | chr4_2:55694251-55694270 | None:intergenic | 50.0% | |
| TAAGGCAAGCGTAGTTGTGG+AGG | + | chr4_2:55694259-55694278 | None:intergenic | 50.0% | |
| AGCTAAGGCAAGCGTAGTTG+TGG | + | chr4_2:55694262-55694281 | None:intergenic | 50.0% | |
| !! | TTTGATTCGGAGAGTTCGGG+AGG | + | chr4_2:55694290-55694309 | None:intergenic | 50.0% |
| GAGATGCGAAAGCTCTTGGA+CGG | - | chr4_2:55694332-55694351 | Msa0608570:three_prime_UTR | 50.0% | |
| ACAATCTGGAAGATCGCGAC+TGG | - | chr4_2:55694357-55694376 | Msa0608570:exon | 50.0% | |
| ! | GAAGATCGCGACTGGCTATT+CGG | - | chr4_2:55694365-55694384 | Msa0608570:CDS | 50.0% |
| ! | AAGATCGCGACTGGCTATTC+GGG | - | chr4_2:55694366-55694385 | Msa0608570:CDS | 50.0% |
| CATCTCCCTCTGTTGTTCCA+TGG | + | chr4_2:55694468-55694487 | None:intergenic | 50.0% | |
| ! | ATCGTGGTGTTTTTCGTGGG+TGG | - | chr4_2:55694516-55694535 | Msa0608570:CDS | 50.0% |
| ! | GTTTTTCGTGGGTGGCTTAC+TGG | - | chr4_2:55694524-55694543 | Msa0608570:CDS | 50.0% |
| ATGGCCCACAAGAAGAGTTG+AGG | - | chr4_2:55694549-55694568 | Msa0608570:CDS | 50.0% | |
| ! | GAGGAAGTTGGCTCTTCATG+AGG | - | chr4_2:55694568-55694587 | Msa0608570:CDS | 50.0% |
| ! | TAAGCATGTGGCAGCTTTGG+TGG | + | chr4_2:55694893-55694912 | None:intergenic | 50.0% |
| ! | CTATGTCTGAGTTGGGCCAT+GGG | - | chr4_2:55695396-55695415 | Msa0608570:intron | 50.0% |
| ! | GAGTGATTTTCACAGGTCCG+AGG | - | chr4_2:55695514-55695533 | Msa0608570:intron | 50.0% |
| !! | GCTCAGAAGTATTGGATCGG+TGG | - | chr4_2:55695604-55695623 | Msa0608570:intron | 50.0% |
| TCGGTGGTGCAGCAAATGTA+AGG | - | chr4_2:55695620-55695639 | Msa0608570:intron | 50.0% | |
| GCCCAAATCAGGGATTCAGA+TGG | - | chr4_2:55695837-55695856 | Msa0608570:intron | 50.0% | |
| CTGGCTGGACATCTAACTTC+AGG | - | chr4_2:55696013-55696032 | Msa0608570:intron | 50.0% | |
| ! | ACTTGGTGAAACATCGGCCA+CGG | + | chr4_2:55696079-55696098 | None:intergenic | 50.0% |
| GCACTCAAGTATTCGCCACT+TGG | + | chr4_2:55696096-55696115 | None:intergenic | 50.0% | |
| GTATGTCTTCTGTGCTCCAG+AGG | - | chr4_2:55696226-55696245 | Msa0608570:intron | 50.0% | |
| TTCTTAGCCCCTTTGACCTC+TGG | - | chr4_2:55696258-55696277 | Msa0608570:intron | 50.0% | |
| TACACGACCAGAGGTCAAAG+GGG | + | chr4_2:55696268-55696287 | None:intergenic | 50.0% | |
| GTTACACGACCAGAGGTCAA+AGG | + | chr4_2:55696270-55696289 | None:intergenic | 50.0% | |
| GGCAATAGTTACACGACCAG+AGG | + | chr4_2:55696277-55696296 | None:intergenic | 50.0% | |
| ! | GTAGCAGGTTCTGATGCAGT+AGG | - | chr4_2:55697339-55697358 | Msa0608570:CDS | 50.0% |
| ATAGGTCTCGCTCTCTTAGG+TGG | + | chr4_2:55698603-55698622 | None:intergenic | 50.0% | |
| CCTCAGCAAGCTGATAACTC+TGG | + | chr4_2:55698773-55698792 | None:intergenic | 50.0% | |
| !! | CCAGAGTTATCAGCTTGCTG+AGG | - | chr4_2:55698770-55698789 | Msa0608570:intron | 50.0% |
| TCTCCTCTGCAGGATGTCTT+AGG | - | chr4_2:55698995-55699014 | Msa0608570:CDS | 50.0% | |
| AGACCTAAGACATCCTGCAG+AGG | + | chr4_2:55699001-55699020 | None:intergenic | 50.0% | |
| ACATGCAGAAACCCGCATGA+GGG | + | chr4_2:55699260-55699279 | None:intergenic | 50.0% | |
| CGGGTTTCTGCATGTGATTG+AGG | - | chr4_2:55699265-55699284 | Msa0608570:CDS | 50.0% | |
| !! | TTGAGGTATTGGATGGGGTG+TGG | - | chr4_2:55699282-55699301 | Msa0608570:CDS | 50.0% |
| GTGAATAAGTGGGGTGTGTG+GGG | - | chr4_2:55699410-55699429 | Msa0608570:CDS | 50.0% | |
| CATTGGTATATGCAGGGGTC+AGG | + | chr4_2:55699443-55699462 | None:intergenic | 50.0% | |
| GCCAACTGAGTTATGCTCTC+GGG | - | chr4_2:55699473-55699492 | Msa0608570:five_prime_UTR | 50.0% | |
| CCAACTGAGTTATGCTCTCG+GGG | - | chr4_2:55699474-55699493 | Msa0608570:five_prime_UTR | 50.0% | |
| GGTGATGCGGTTGTTGTCCA+TGG | + | chr4_2:55694177-55694196 | None:intergenic | 55.0% | |
| GAGGTGATTGGTGAGGATGG+TGG | + | chr4_2:55694207-55694226 | None:intergenic | 55.0% | |
| GGATTGTTGGTGCGGTTGGT+GGG | + | chr4_2:55694238-55694257 | None:intergenic | 55.0% | |
| AGGATTGTTGGTGCGGTTGG+TGG | + | chr4_2:55694239-55694258 | None:intergenic | 55.0% | |
| TGGAGGATTGTTGGTGCGGT+TGG | + | chr4_2:55694242-55694261 | None:intergenic | 55.0% | |
| GTTCGGGAGGAGAGTAGCTA+AGG | + | chr4_2:55694277-55694296 | None:intergenic | 55.0% | |
| GCTCTTGGACGGTCACAATC+TGG | - | chr4_2:55694343-55694362 | Msa0608570:three_prime_UTR | 55.0% | |
| !! | AGAGCGGACTATTCAACCGG+CGG | - | chr4_2:55694399-55694418 | Msa0608570:CDS | 55.0% |
| GTGTAGCCAACCCCACTTAG+TGG | - | chr4_2:55694847-55694866 | Msa0608570:intron | 55.0% | |
| ACCAAGCCACTAAGTGGGGT+TGG | + | chr4_2:55694856-55694875 | None:intergenic | 55.0% | |
| GGCGGGGCTGTAAAGTTTCT+GGG | - | chr4_2:55695308-55695327 | Msa0608570:intron | 55.0% | |
| ! | CCACTTGTCATGGTGACGCT+TGG | + | chr4_2:55695336-55695355 | None:intergenic | 55.0% |
| CCAAGCGTCACCATGACAAG+TGG | - | chr4_2:55695333-55695352 | Msa0608570:intron | 55.0% | |
| ! | GCTATGTCTGAGTTGGGCCA+TGG | - | chr4_2:55695395-55695414 | Msa0608570:intron | 55.0% |
| GTGGCCGATGTTTCACCAAG+TGG | - | chr4_2:55696078-55696097 | Msa0608570:intron | 55.0% | |
| ACATATATGAGCCGCAGGGC+AGG | + | chr4_2:55696805-55696824 | None:intergenic | 55.0% | |
| ! | GTAGGCTACTGGCCTCACTA+AGG | - | chr4_2:55697121-55697140 | Msa0608570:CDS | 55.0% |
| CAGGAATGCCGTGAAGCATG+TGG | - | chr4_2:55697167-55697186 | Msa0608570:intron | 55.0% | |
| GAATGCCGTGAAGCATGTGG+AGG | - | chr4_2:55697170-55697189 | Msa0608570:intron | 55.0% | |
| CCTGTCCTCCACATGCTTCA+CGG | + | chr4_2:55697178-55697197 | None:intergenic | 55.0% | |
| CGTGAAGCATGTGGAGGACA+GGG | - | chr4_2:55697176-55697195 | Msa0608570:intron | 55.0% | |
| GCTGTAGCACTGTTGCGTAG+TGG | - | chr4_2:55698245-55698264 | Msa0608570:CDS | 55.0% | |
| GCTGAGTCAGCTTTACCAGC+CGG | - | chr4_2:55698843-55698862 | Msa0608570:intron | 55.0% | |
| GACGCTGCCTTTCTCCGATA+TGG | - | chr4_2:55699058-55699077 | Msa0608570:CDS | 55.0% | |
| CACATGCAGAAACCCGCATG+AGG | + | chr4_2:55699261-55699280 | None:intergenic | 55.0% | |
| ! | CCCCGAGAGCATAACTCAGT+TGG | + | chr4_2:55699477-55699496 | None:intergenic | 55.0% |
| TATGCTCTCGGGGACCAATG+TGG | - | chr4_2:55699484-55699503 | Msa0608570:five_prime_UTR | 55.0% | |
| ! | TGGTGAGGATGGTGGTTCGG+CGG | + | chr4_2:55694199-55694218 | None:intergenic | 60.0% |
| GCGGAGGTGATTGGTGAGGA+TGG | + | chr4_2:55694210-55694229 | None:intergenic | 60.0% | |
| !! | GAGCGGACTATTCAACCGGC+GGG | - | chr4_2:55694400-55694419 | Msa0608570:CDS | 60.0% |
| TTCAACCGGCGGGAAGTCGA+CGG | - | chr4_2:55694410-55694429 | Msa0608570:CDS | 60.0% | |
| CGTGGGTGGCTTACTGGTGA+TGG | - | chr4_2:55694530-55694549 | Msa0608570:CDS | 60.0% | |
| GCCAACCCCACTTAGTGGCT+TGG | - | chr4_2:55694852-55694871 | Msa0608570:intron | 60.0% | |
| GGGCGGGGCTGTAAAGTTTC+TGG | - | chr4_2:55695307-55695326 | Msa0608570:intron | 60.0% | |
| CCGTGAAGCATGTGGAGGAC+AGG | - | chr4_2:55697175-55697194 | Msa0608570:intron | 60.0% | |
| CACACGTGCGTGCACTGAGA+AGG | + | chr4_2:55698908-55698927 | None:intergenic | 60.0% | |
| TCGACCGCATGCACTTGCCT+TGG | - | chr4_2:55699144-55699163 | Msa0608570:CDS | 60.0% | |
| ! | TGGTGGTTCGGCGGGTGATG+CGG | + | chr4_2:55694190-55694209 | None:intergenic | 65.0% |
| ! | GGTGAGGATGGTGGTTCGGC+GGG | + | chr4_2:55694198-55694217 | None:intergenic | 65.0% |
| ! | CGTGGCGGAGGTGATTGGTG+AGG | + | chr4_2:55694214-55694233 | None:intergenic | 65.0% |
| ! | TGGGTCGTGGCGGAGGTGAT+TGG | + | chr4_2:55694219-55694238 | None:intergenic | 65.0% |
| !! | TTGGTGCGGTTGGTGGGTCG+TGG | + | chr4_2:55694232-55694251 | None:intergenic | 65.0% |
| !! | GTGCGGTTGGTGGGTCGTGG+CGG | + | chr4_2:55694229-55694248 | None:intergenic | 70.0% |
| !! | CGGTTGGTGGGTCGTGGCGG+AGG | + | chr4_2:55694226-55694245 | None:intergenic | 75.0% |
| ACCGGCGGGAAGTCGACGGC+AGG | - | chr4_2:55694414-55694433 | Msa0608570:CDS | 75.0% | |
| !! | CCCTGCCGTCGACTTCCCGC+CGG | + | chr4_2:55694418-55694437 | None:intergenic | 75.0% |
| CCGGCGGGAAGTCGACGGCA+GGG | - | chr4_2:55694415-55694434 | Msa0608570:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55693977 | 55699642 | 55693977 | ID=Msa0608570;Name=Msa0608570 |
| chr4_2 | mRNA | 55693977 | 55699642 | 55693977 | ID=Msa0608570-mRNA-1;Parent=Msa0608570;Name=Msa0608570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=199|1|1|1|1|1|13|387|678 |
| chr4_2 | exon | 55693977 | 55694612 | 55693977 | ID=Msa0608570-mRNA-1:exon:14276;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55694744 | 55694845 | 55694744 | ID=Msa0608570-mRNA-1:exon:14275;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55694926 | 55695030 | 55694926 | ID=Msa0608570-mRNA-1:exon:14274;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55695119 | 55695265 | 55695119 | ID=Msa0608570-mRNA-1:exon:14273;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55696330 | 55696449 | 55696330 | ID=Msa0608570-mRNA-1:exon:14272;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55696544 | 55696679 | 55696544 | ID=Msa0608570-mRNA-1:exon:14271;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55697048 | 55697178 | 55697048 | ID=Msa0608570-mRNA-1:exon:14270;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55697299 | 55697373 | 55697299 | ID=Msa0608570-mRNA-1:exon:14269;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55697485 | 55697584 | 55697485 | ID=Msa0608570-mRNA-1:exon:14268;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55697682 | 55697854 | 55697682 | ID=Msa0608570-mRNA-1:exon:14267;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55697983 | 55698090 | 55697983 | ID=Msa0608570-mRNA-1:exon:14266;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55698195 | 55698312 | 55698195 | ID=Msa0608570-mRNA-1:exon:14265;Parent=Msa0608570-mRNA-1 |
| chr4_2 | exon | 55698971 | 55699642 | 55698971 | ID=Msa0608570-mRNA-1:exon:14264;Parent=Msa0608570-mRNA-1 |
| chr4_2 | five_prime_UTR | 55699444 | 55699642 | 55699444 | ID=Msa0608570-mRNA-1:five_prime_utr;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55698971 | 55699443 | 55698971 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55698195 | 55698312 | 55698195 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55697983 | 55698090 | 55697983 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55697682 | 55697854 | 55697682 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55697485 | 55697584 | 55697485 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55697299 | 55697373 | 55697299 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55697048 | 55697178 | 55697048 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55696544 | 55696679 | 55696544 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55696330 | 55696449 | 55696330 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55695119 | 55695265 | 55695119 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55694926 | 55695030 | 55694926 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55694744 | 55694845 | 55694744 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | CDS | 55694364 | 55694612 | 55694364 | ID=Msa0608570-mRNA-1:cds;Parent=Msa0608570-mRNA-1 |
| chr4_2 | three_prime_UTR | 55693977 | 55694363 | 55693977 | ID=Msa0608570-mRNA-1:three_prime_utr;Parent=Msa0608570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
