AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0196880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0196880 MtrunA17_Chr2g0288871 96.454 564 9 4 1 564 1 553 0.0 1108
Msa0196880 MtrunA17_Chr4g0075201 54.527 486 149 20 59 525 33 465 3.35e-138 410
Msa0196880 MtrunA17_Chr2g0322391 46.727 550 197 18 62 557 81 588 1.27e-124 379
Msa0196880 MtrunA17_Chr3g0099641 43.388 484 196 14 60 536 32 444 1.68e-108 333
Msa0196880 MtrunA17_Chr4g0025061 36.528 553 230 18 67 543 60 567 1.10e-85 278
Msa0196880 MtrunA17_Chr7g0270831 39.960 498 165 16 67 546 30 411 3.91e-85 271
Msa0196880 MtrunA17_Chr4g0024391 38.105 475 190 15 144 543 1 446 3.51e-76 249
Msa0196880 MtrunA17_Chr4g0025051 36.237 574 233 19 67 551 35 564 2.01e-74 248
Msa0196880 MtrunA17_Chr2g0302391 33.886 422 183 14 143 542 68 415 9.46e-56 193
Msa0196880 MtrunA17_Chr7g0216891 32.755 461 223 14 150 542 47 488 1.11e-54 194
Msa0196880 MtrunA17_Chr4g0060271 36.175 481 228 16 143 556 70 538 1.30e-46 172
Msa0196880 MtrunA17_Chr4g0051181 32.422 512 268 16 76 550 17 487 5.87e-46 168
Msa0196880 MtrunA17_Chr5g0419241 90.476 63 6 0 275 337 45 107 2.18e-35 128
Msa0196880 MtrunA17_Chr1g0150281 33.191 235 110 5 150 383 28 216 1.43e-28 115
Msa0196880 MtrunA17_Chr4g0001361 38.816 152 69 4 282 433 137 264 3.33e-27 112
Msa0196880 MtrunA17_Chr3g0101131 30.877 285 142 10 112 369 220 476 3.08e-25 110
Msa0196880 MtrunA17_Chr1g0150271 45.918 98 51 1 302 397 96 193 1.89e-24 102
Msa0196880 MtrunA17_Chr5g0445311 55.000 80 35 1 290 369 347 425 1.93e-24 107
Msa0196880 MtrunA17_Chr7g0218081 35.294 170 104 3 217 382 317 484 2.20e-24 107
Msa0196880 MtrunA17_Chr3g0136961 50.588 85 42 0 292 376 123 207 2.66e-24 103
Msa0196880 MtrunA17_Chr7g0270191 48.421 95 44 2 291 385 129 218 1.39e-23 101
Msa0196880 MtrunA17_Chr3g0079691 50.000 90 44 1 280 369 468 556 1.43e-23 105
Msa0196880 MtrunA17_Chr3g0079691 44.086 93 50 2 276 368 249 339 1.17e-16 83.6
Msa0196880 MtrunA17_Chr3g0106491 53.165 79 36 1 289 367 347 424 2.12e-23 103
Msa0196880 MtrunA17_Chr3g0106491 30.872 149 70 4 221 369 143 258 2.40e-11 66.2
Msa0196880 MtrunA17_Chr4g0004911 53.165 79 36 1 289 367 318 395 2.57e-23 103
Msa0196880 MtrunA17_Chr4g0004911 42.667 75 40 2 293 367 172 243 2.30e-14 75.9
Msa0196880 MtrunA17_Chr5g0432161 53.086 81 37 1 289 369 403 482 4.41e-23 103
Msa0196880 MtrunA17_Chr5g0432161 51.667 60 27 2 308 367 245 302 1.40e-13 73.6
Msa0196880 MtrunA17_Chr7g0243891 52.326 86 40 1 284 369 351 435 5.11e-23 102
Msa0196880 MtrunA17_Chr5g0418191 45.918 98 52 1 289 386 302 398 1.91e-22 100
Msa0196880 MtrunA17_Chr5g0418191 39.583 96 56 2 308 403 152 245 3.99e-13 71.6
Msa0196880 MtrunA17_Chr2g0333851 51.190 84 36 2 289 367 146 229 2.52e-22 98.2
Msa0196880 MtrunA17_Chr5g0447701 45.631 103 49 3 282 379 222 322 3.46e-22 99.0
Msa0196880 MtrunA17_Chr5g0447701 41.250 80 45 2 305 384 90 167 2.34e-11 65.9
Msa0196880 MtrunA17_Chr4g0042831 47.368 95 46 2 289 380 260 353 3.67e-22 99.0
Msa0196880 MtrunA17_Chr4g0051881 45.055 91 49 1 294 384 165 254 4.16e-22 97.8
Msa0196880 MtrunA17_Chr7g0249311 52.500 80 37 1 290 369 375 453 5.31e-22 100
Msa0196880 MtrunA17_Chr7g0249311 50.000 60 28 2 308 367 180 237 1.61e-11 67.0
Msa0196880 MtrunA17_Chr1g0150801 42.424 99 55 2 267 365 63 159 5.77e-22 92.8
Msa0196880 MtrunA17_Chr2g0294231 44.348 115 53 4 291 401 187 294 5.95e-22 98.2
Msa0196880 MtrunA17_Chr7g0249301 52.500 80 37 1 290 369 275 353 6.06e-22 98.2
Msa0196880 MtrunA17_Chr7g0249301 47.692 65 32 2 303 367 58 120 7.01e-12 67.4
Msa0196880 MtrunA17_Chr7g0224801 53.521 71 32 1 296 366 82 151 6.41e-22 93.2
Msa0196880 MtrunA17_Chr1g0194481 43.269 104 57 2 291 393 142 244 5.92e-21 94.0
Msa0196880 MtrunA17_Chr7g0263531 41.837 98 56 1 270 367 324 420 1.50e-20 94.4
Msa0196880 MtrunA17_Chr7g0263531 51.667 60 27 2 308 367 190 247 2.29e-12 69.3
Msa0196880 MtrunA17_Chr7g0270051 45.361 97 44 2 290 380 30 123 1.96e-20 91.3
Msa0196880 MtrunA17_Chr8g0383251 45.946 74 39 1 294 367 95 167 3.55e-20 88.6
Msa0196880 MtrunA17_Chr5g0418781 50.000 78 38 1 287 364 104 180 6.80e-20 90.1
Msa0196880 MtrunA17_Chr4g0068541 47.619 84 42 2 291 374 192 273 1.09e-19 91.7
Msa0196880 MtrunA17_Chr5g0443131 50.000 74 36 1 294 367 144 216 2.57e-19 89.0
Msa0196880 MtrunA17_Chr1g0147881 48.649 74 38 0 291 364 246 319 4.03e-19 89.0
Msa0196880 MtrunA17_Chr4g0074001 49.367 79 37 2 291 367 343 420 4.09e-19 90.9
Msa0196880 MtrunA17_Chr7g0248721 34.682 173 98 6 195 365 38 197 4.22e-19 86.3
Msa0196880 MtrunA17_Chr5g0401821 50.000 76 38 0 291 366 183 258 4.64e-19 87.4
Msa0196880 MtrunA17_Chr8g0379461 59.016 61 25 0 307 367 76 136 6.58e-19 86.3
Msa0196880 MtrunA17_Chr8g0335811 48.000 75 38 1 290 364 137 210 7.24e-19 85.9
Msa0196880 MtrunA17_Chr4g0053281 49.367 79 40 0 291 369 250 328 7.59e-19 88.2
Msa0196880 MtrunA17_Chr2g0293481 51.316 76 37 0 307 382 267 342 1.43e-18 89.0
Msa0196880 MtrunA17_Chr1g0184691 46.429 84 45 0 291 374 277 360 1.59e-18 87.4
Msa0196880 MtrunA17_Chr2g0284321 56.452 62 27 0 307 368 35 96 2.10e-18 84.3
Msa0196880 MtrunA17_Chr2g0319961 54.286 70 32 0 298 367 71 140 2.64e-18 85.1
Msa0196880 MtrunA17_Chr3g0129361 46.667 75 39 1 290 364 127 200 3.27e-18 84.0
Msa0196880 MtrunA17_Chr8g0386241 45.570 79 42 1 292 370 88 165 5.36e-18 82.0
Msa0196880 MtrunA17_Chr3g0129321 47.297 74 38 1 294 367 105 177 5.55e-18 82.8
Msa0196880 MtrunA17_Chr1g0188941 41.667 84 48 1 284 367 28 110 7.55e-18 79.7
Msa0196880 MtrunA17_Chr7g0228941 49.296 71 36 0 294 364 39 109 7.66e-18 80.1
Msa0196880 MtrunA17_Chr4g0071521 50.000 74 37 0 291 364 229 302 1.42e-17 84.0
Msa0196880 MtrunA17_Chr7g0248691 50.000 74 37 0 304 377 151 224 1.60e-17 84.0
Msa0196880 MtrunA17_Chr2g0289181 34.074 135 79 3 302 426 9 143 4.69e-17 80.9
Msa0196880 MtrunA17_Chr8g0383351 46.053 76 39 2 290 364 142 216 7.53e-17 80.1
Msa0196880 MtrunA17_Chr8g0348311 49.296 71 36 0 307 377 155 225 7.77e-17 82.0
Msa0196880 MtrunA17_Chr3g0139021 47.297 74 39 0 291 364 298 371 8.09e-17 82.8
Msa0196880 MtrunA17_Chr8g0387501 44.444 72 40 0 306 377 128 199 1.15e-15 77.4
Msa0196880 MtrunA17_Chr6g0485431 46.667 75 38 2 294 367 141 214 1.17e-14 75.9
Msa0196880 MtrunA17_Chr7g0238921 37.190 121 59 3 267 372 70 188 1.47e-14 75.1
Msa0196880 MtrunA17_Chr1g0202461 46.479 71 38 0 307 377 261 331 2.51e-14 75.1
Msa0196880 MtrunA17_Chr1g0189391 43.056 72 39 2 294 364 84 154 1.42e-13 72.0
Msa0196880 MtrunA17_Chr5g0432071 41.558 77 43 2 308 384 105 179 1.80e-13 69.7
Msa0196880 MtrunA17_Chr3g0126391 54.237 59 25 1 306 362 132 190 4.37e-13 70.9
Msa0196880 MtrunA17_Chr8g0347251 49.275 69 28 2 306 367 135 203 4.93e-12 67.8
Msa0196880 MtrunA17_Chr7g0244971 35.294 102 63 2 288 386 103 204 8.47e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0196880 AT1G62300.1 50.082 607 186 28 1 545 1 552 1.44e-152 449
Msa0196880 AT4G04450.1 51.816 523 160 22 62 536 25 503 8.03e-141 418
Msa0196880 AT4G04450.2 54.525 453 121 20 125 536 1 409 3.83e-129 385
Msa0196880 AT4G22070.4 51.838 544 186 20 43 538 1 516 1.79e-120 366
Msa0196880 AT4G22070.3 51.838 544 186 20 43 538 1 516 1.79e-120 366
Msa0196880 AT4G22070.2 51.838 544 186 20 43 538 1 516 1.79e-120 366
Msa0196880 AT4G22070.1 51.838 544 186 20 43 538 1 516 1.79e-120 366
Msa0196880 AT4G01720.1 42.247 445 181 15 110 543 73 452 1.53e-61 211
Msa0196880 AT5G15130.1 33.921 454 217 15 143 537 35 464 1.27e-50 183
Msa0196880 AT5G15130.2 33.857 446 212 15 151 537 1 422 5.39e-49 177
Msa0196880 AT1G68150.1 40.711 253 108 8 146 388 96 316 7.05e-49 174
Msa0196880 AT1G18860.1 37.764 331 166 7 142 432 40 370 6.34e-43 161
Msa0196880 AT1G69810.1 33.846 325 191 8 128 437 14 329 1.49e-41 154
Msa0196880 AT1G69810.2 53.691 149 63 3 290 437 128 271 5.71e-37 140
Msa0196880 AT4G31800.1 34.156 243 123 5 145 385 47 254 1.26e-31 125
Msa0196880 AT1G80840.1 31.641 256 114 7 116 367 8 206 3.71e-29 117
Msa0196880 AT4G31800.2 50.505 99 44 2 292 385 91 189 5.88e-25 104
Msa0196880 AT2G38470.1 49.451 91 45 1 289 379 344 433 9.25e-25 108
Msa0196880 AT2G38470.1 51.667 60 27 2 308 367 185 242 2.62e-13 72.8
Msa0196880 AT4G26640.5 53.846 78 35 1 290 367 188 264 6.83e-24 104
Msa0196880 AT4G26640.5 37.363 91 55 2 277 367 5 93 5.43e-13 71.2
Msa0196880 AT4G26640.6 53.846 78 35 1 290 367 188 264 6.83e-24 104
Msa0196880 AT4G26640.6 37.363 91 55 2 277 367 5 93 5.43e-13 71.2
Msa0196880 AT4G26640.4 53.846 78 35 1 290 367 188 264 6.83e-24 104
Msa0196880 AT4G26640.4 37.363 91 55 2 277 367 5 93 5.43e-13 71.2
Msa0196880 AT4G26640.3 53.846 78 35 1 290 367 188 264 6.83e-24 104
Msa0196880 AT4G26640.3 37.363 91 55 2 277 367 5 93 5.43e-13 71.2
Msa0196880 AT2G25000.2 48.864 88 45 0 285 372 81 168 1.15e-23 100
Msa0196880 AT2G25000.4 48.864 88 45 0 285 372 81 168 1.15e-23 100
Msa0196880 AT2G25000.3 46.237 93 50 0 280 372 98 190 1.32e-23 100
Msa0196880 AT4G26640.1 53.846 78 35 1 290 367 292 368 1.65e-23 104
Msa0196880 AT4G26640.1 37.363 91 55 2 277 367 109 197 6.91e-13 71.6
Msa0196880 AT4G26640.7 53.846 78 35 1 290 367 324 400 1.79e-23 104
Msa0196880 AT4G26640.7 37.363 91 55 2 277 367 141 229 7.10e-13 71.6
Msa0196880 AT1G29860.1 36.774 155 86 4 248 396 82 230 2.02e-23 100
Msa0196880 AT2G25000.1 48.864 88 45 0 285 372 124 211 2.18e-23 100
Msa0196880 AT4G26640.2 53.846 78 35 1 290 367 364 440 2.39e-23 104
Msa0196880 AT4G26640.2 37.363 91 55 2 277 367 181 269 7.89e-13 71.6
Msa0196880 AT1G13960.2 53.571 84 38 1 284 367 233 315 2.44e-23 102
Msa0196880 AT1G13960.2 51.667 60 27 2 308 367 77 134 2.02e-12 69.3
Msa0196880 AT1G13960.1 53.571 84 38 1 284 367 386 468 3.05e-23 103
Msa0196880 AT1G13960.1 51.667 60 27 2 308 367 230 287 1.45e-12 70.5
Msa0196880 AT5G26170.1 51.389 72 34 1 293 364 99 169 4.04e-23 97.1
Msa0196880 AT5G56270.1 49.438 89 44 1 281 369 461 548 5.60e-23 103
Msa0196880 AT5G56270.1 50.820 61 28 2 308 368 274 332 5.97e-12 68.9
Msa0196880 AT5G49520.1 51.948 77 36 1 291 367 205 280 9.04e-23 101
Msa0196880 AT4G18170.1 48.913 92 45 2 277 367 141 231 1.06e-22 99.8
Msa0196880 AT2G03340.1 51.163 86 41 1 284 369 392 476 2.05e-22 101
Msa0196880 AT2G03340.1 51.667 60 27 2 308 367 251 308 5.80e-13 72.0
Msa0196880 AT5G07100.2 47.126 87 45 1 281 367 115 200 2.92e-22 95.9
Msa0196880 AT5G07100.2 41.096 73 42 1 308 380 25 96 1.94e-11 64.3
Msa0196880 AT5G07100.4 47.126 87 45 1 281 367 115 200 2.92e-22 95.9
Msa0196880 AT5G07100.4 41.096 73 42 1 308 380 25 96 1.94e-11 64.3
Msa0196880 AT5G07100.5 47.126 87 45 1 281 367 115 200 2.92e-22 95.9
Msa0196880 AT5G07100.5 41.096 73 42 1 308 380 25 96 1.94e-11 64.3
Msa0196880 AT5G07100.3 47.126 87 45 1 281 367 115 200 2.92e-22 95.9
Msa0196880 AT5G07100.3 41.096 73 42 1 308 380 25 96 1.94e-11 64.3
Msa0196880 AT2G04880.2 44.828 87 47 1 286 372 262 347 3.79e-22 100
Msa0196880 AT2G04880.2 46.970 66 33 2 305 370 109 172 3.14e-12 69.3
Msa0196880 AT2G04880.1 44.828 87 47 1 286 372 286 371 4.76e-22 100
Msa0196880 AT2G04880.1 46.970 66 33 2 305 370 109 172 4.07e-12 68.9
Msa0196880 AT5G07100.1 47.126 87 45 1 281 367 208 293 5.53e-22 97.4
Msa0196880 AT5G07100.1 41.096 73 42 1 308 380 118 189 3.85e-11 65.1
Msa0196880 AT1G64000.1 48.235 85 43 1 281 365 88 171 6.63e-22 94.4
Msa0196880 AT5G41570.1 53.750 80 35 2 287 365 77 155 7.49e-22 93.6
Msa0196880 AT5G46350.1 48.864 88 43 2 294 380 170 256 1.19e-21 96.7
Msa0196880 AT3G01080.1 47.619 84 43 1 284 367 283 365 3.81e-21 96.7
Msa0196880 AT3G01080.1 51.667 60 27 2 308 367 168 225 2.33e-11 66.6
Msa0196880 AT3G01080.2 47.619 84 43 1 284 367 321 403 4.35e-21 96.7
Msa0196880 AT3G01080.2 51.667 60 27 2 308 367 206 263 2.20e-11 66.6
Msa0196880 AT2G30250.1 51.250 80 38 1 290 369 311 389 6.67e-21 95.5
Msa0196880 AT2G47260.1 43.243 111 58 2 283 389 150 259 6.91e-21 94.7
Msa0196880 AT2G46130.1 48.780 82 41 1 284 365 7 87 1.29e-20 87.8
Msa0196880 AT1G55600.1 44.444 90 49 1 280 369 280 368 1.71e-20 95.1
Msa0196880 AT5G13080.1 43.000 100 56 1 267 366 27 125 2.10e-20 88.2
Msa0196880 AT4G30935.1 44.554 101 45 3 291 383 315 412 4.02e-20 94.0
Msa0196880 AT4G26440.1 45.545 101 52 2 291 391 356 453 5.68e-20 94.0
Msa0196880 AT2G30590.1 50.000 82 40 1 291 371 297 378 9.41e-20 92.0
Msa0196880 AT1G29280.1 51.429 70 34 0 298 367 65 134 1.18e-19 89.4
Msa0196880 AT3G01970.1 43.137 102 57 1 263 364 21 121 1.36e-19 85.9
Msa0196880 AT4G31800.3 31.683 202 101 5 145 344 47 213 1.60e-19 88.6
Msa0196880 AT1G69310.4 42.353 85 48 1 280 364 120 203 1.96e-19 89.4
Msa0196880 AT1G69310.2 42.353 85 48 1 280 364 120 203 1.96e-19 89.4
Msa0196880 AT1G69310.1 42.353 85 48 1 280 364 120 203 1.96e-19 89.4
Msa0196880 AT2G44745.1 40.909 88 51 1 277 364 115 201 2.66e-19 87.4
Msa0196880 AT2G23320.1 57.627 59 25 0 308 366 241 299 4.43e-19 89.0
Msa0196880 AT5G64810.1 47.887 71 36 1 294 364 97 166 5.57e-19 85.9
Msa0196880 AT4G24240.1 50.000 76 38 0 291 366 265 340 1.11e-18 88.2
Msa0196880 AT3G62340.1 44.944 89 48 1 294 382 105 192 1.24e-18 86.7
Msa0196880 AT5G28650.1 48.649 74 38 0 291 364 246 319 1.87e-18 87.4
Msa0196880 AT3G58710.1 52.857 70 33 0 298 367 62 131 2.10e-18 85.9
Msa0196880 AT3G58710.2 52.857 70 33 0 298 367 61 130 2.13e-18 85.9
Msa0196880 AT4G39410.1 43.902 82 45 1 283 364 199 279 2.99e-18 86.3
Msa0196880 AT2G34830.1 48.193 83 42 1 293 374 200 282 8.68e-18 86.3
Msa0196880 AT3G04670.1 47.297 74 39 0 291 364 246 319 1.05e-17 85.1
Msa0196880 AT1G30650.1 48.193 83 42 1 293 374 202 284 1.10e-17 86.3
Msa0196880 AT2G34830.2 48.193 83 42 1 293 374 209 291 1.16e-17 86.3
Msa0196880 AT2G24570.1 48.649 74 38 0 291 364 227 300 1.22e-17 84.7
Msa0196880 AT4G23550.1 45.679 81 44 0 302 382 135 215 2.14e-17 83.6
Msa0196880 AT4G31550.1 47.297 74 39 0 291 364 230 303 2.35e-17 84.0
Msa0196880 AT4G31550.2 47.297 74 39 0 291 364 229 302 2.46e-17 84.0
Msa0196880 AT4G01250.1 49.296 71 36 0 307 377 128 198 3.42e-17 82.8
Msa0196880 AT2G37260.2 49.333 75 34 2 302 373 262 335 7.38e-17 82.8
Msa0196880 AT2G37260.2 38.202 89 53 2 308 396 84 170 8.26e-14 73.6
Msa0196880 AT2G37260.3 49.333 75 34 2 302 373 264 337 7.61e-17 82.8
Msa0196880 AT2G37260.3 38.202 89 53 2 308 396 86 172 8.55e-14 73.6
Msa0196880 AT5G52830.1 46.753 77 41 0 301 377 159 235 1.11e-16 82.0
Msa0196880 AT2G37260.1 49.333 75 34 2 302 373 344 417 1.56e-16 82.4
Msa0196880 AT2G37260.1 42.105 76 42 2 308 383 166 239 1.49e-13 73.2
Msa0196880 AT2G46130.2 45.122 82 40 2 284 365 7 83 1.00e-15 73.6
Msa0196880 AT1G69310.3 38.824 85 47 2 280 364 120 199 1.60e-14 74.7
Msa0196880 AT5G45050.1 54.098 61 28 0 307 367 1180 1240 2.68e-14 77.0
Msa0196880 AT5G45050.2 54.098 61 28 0 307 367 1152 1212 2.96e-14 76.6
Msa0196880 AT5G45050.4 50.000 76 36 1 292 367 1028 1101 3.04e-14 76.6
Msa0196880 AT2G21900.1 43.939 66 36 1 302 367 104 168 6.03e-14 71.2
Msa0196880 AT5G45260.1 39.216 102 55 3 283 382 1189 1285 2.90e-13 73.6
Msa0196880 AT5G43290.1 41.667 72 40 2 294 364 100 170 3.80e-13 70.5
Msa0196880 AT3G01080.3 51.667 60 27 2 308 367 206 263 9.70e-12 67.0
Msa0196880 AT2G46400.1 41.772 79 44 1 286 362 83 161 1.01e-11 66.6
Msa0196880 AT2G40740.1 47.297 74 34 2 308 376 174 247 2.98e-11 65.1
Msa0196880 AT2G40740.3 47.297 74 34 2 308 376 183 256 4.12e-11 64.7

Find 124 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTTGTGTTTCTGATTC+TGG 0.066609 2_1:+14463670 None:intergenic
CTAAATATTCCTTTGTTCTT+AGG 0.146906 2_1:-14462433 Msa0196880:exon
ATAGCTCTTGCTAATAAATT+TGG 0.191323 2_1:+14462933 None:intergenic
CTTTGAAATTGTAATGGATT+TGG 0.230411 2_1:+14462825 None:intergenic
TCTTCCTTGTTCAACAAGTA+TGG 0.264718 2_1:-14462910 Msa0196880:CDS
TTTGAAATTGTAATGGATTT+GGG 0.275227 2_1:+14462826 None:intergenic
GTTTATTATATATTATTATA+TGG 0.291752 2_1:-14465078 Msa0196880:exon
TTGACAGGAAATCCTAAAAT+AGG 0.296916 2_1:+14464936 None:intergenic
GCGAGAACAGCGGTGAAATT+AGG 0.312907 2_1:+14462561 None:intergenic
ATTAGATATGTTGAAGGAAT+AGG 0.320945 2_1:+14465154 None:intergenic
TGAGAGTGAGATATTGGAAT+TGG 0.324537 2_1:+14465014 None:intergenic
GTTGCTGCTGCTGTTGTTGT+TGG 0.336978 2_1:+14462640 None:intergenic
AAAGGGTGAGAGTGAGATAT+TGG 0.336997 2_1:+14465008 None:intergenic
GGATGCCAATGGAGGAAATA+TGG 0.352069 2_1:-14463416 Msa0196880:CDS
CGCCGTTGGTGTTACGGGTA+AGG 0.353888 2_1:+14464913 None:intergenic
TAAATCCAATATCATCAAAA+AGG 0.354383 2_1:-14464799 Msa0196880:CDS
GTCTTCGCCGTTGGTGTTAC+GGG 0.361102 2_1:+14464908 None:intergenic
CTTGAGATAGGTACTACTAA+TGG 0.365396 2_1:-14463802 Msa0196880:CDS
CGTCTTCGCCGTTGGTGTTA+CGG 0.365794 2_1:+14464907 None:intergenic
CAAGTACCTAGTTTCTTTCA+AGG 0.368680 2_1:-14462780 Msa0196880:CDS
TGCATGGCCACCACCAATAA+TGG 0.382438 2_1:+14462524 None:intergenic
AGGAATAGCAATGGTAAAAC+TGG 0.382516 2_1:-14463706 Msa0196880:CDS
TTGCTGCTGCTGTTGTTGTT+GGG 0.383016 2_1:+14462641 None:intergenic
CTGCAAAGCCGTGTAATTAC+CGG 0.385725 2_1:+14464300 None:intergenic
AAAGAGATTAGATATGTTGA+AGG 0.386115 2_1:+14465148 None:intergenic
AAACTCACTTGTTTGCGAAC+TGG 0.388176 2_1:+14463326 None:intergenic
TTTGTCCATATTTCCTCCAT+TGG 0.390389 2_1:+14463411 None:intergenic
TACTACAGATTGATCACTTC+CGG 0.396054 2_1:+14464587 None:intergenic
TATAATCAATCTAAATTCTC+TGG 0.398209 2_1:-14462720 Msa0196880:CDS
GGCGGTGATAGCGGCGGTGG+CGG 0.398304 2_1:+14462587 None:intergenic
AAACTAGGTACTTGATGAAA+TGG 0.398773 2_1:+14462789 None:intergenic
CCAAGACAATTTCTTGAGAT+AGG 0.405230 2_1:-14463814 Msa0196880:CDS
CCCCTCAATCCCAAAACATA+TGG 0.412646 2_1:+14462305 None:intergenic
TGCTGCTGTTGTTGTTGGGT+TGG 0.425340 2_1:+14462645 None:intergenic
GCAGCAAGCATGTTACTATC+AGG 0.425873 2_1:-14462987 Msa0196880:CDS
AGGAATAGGAGAGAGTAGAG+AGG 0.438660 2_1:+14465168 None:intergenic
CAATTGTCTCATCAAGAAGT+TGG 0.440726 2_1:-14462693 Msa0196880:CDS
AGGAGAGAGTAGAGAGGGAG+AGG 0.445376 2_1:+14465174 None:intergenic
GCCGCAATCTCATCCATTAT+TGG 0.450177 2_1:-14462537 Msa0196880:CDS
GCCATAGCTGCTGGTGGTAA+TGG 0.452891 2_1:+14463032 None:intergenic
GGAATAGGAGAGAGTAGAGA+GGG 0.459992 2_1:+14465169 None:intergenic
CTATAGTATGCTCGAGGACA+TGG 0.465899 2_1:+14463371 None:intergenic
GGCGGTGACCGGAAAATAAC+CGG 0.466327 2_1:-14464885 Msa0196880:CDS
GAGATGCTAAGTCATGTTAC+CGG 0.472299 2_1:-14464319 Msa0196880:CDS
TGAGGTCTTTGAAATTGTAA+TGG 0.474559 2_1:+14462819 None:intergenic
AGCATACTATAGATGCACTA+TGG 0.487105 2_1:-14463360 Msa0196880:CDS
ATCGGCGGTGATAGCGGCGG+TGG 0.487836 2_1:+14462584 None:intergenic
ACGGCGAAGACGGCGGTGAC+CGG 0.490027 2_1:-14464896 Msa0196880:CDS
ATTATTATATGGACAAAGCA+TGG 0.490606 2_1:-14465067 Msa0196880:exon
GTGTTACGGGTAAGGTTGAC+AGG 0.491562 2_1:+14464921 None:intergenic
ATTTGCTTGATCTGCAACAT+TGG 0.493278 2_1:+14463612 None:intergenic
TGCTAGATCAGAAGCTTCAA+TGG 0.495447 2_1:-14463551 Msa0196880:intron
TGTTGTTGCTATTGTTTGCA+TGG 0.495497 2_1:+14462508 None:intergenic
TGCCGAGGACAAAACAATCT+TGG 0.496599 2_1:-14463084 Msa0196880:CDS
ATCTCATCCATTATTGGTGG+TGG 0.503091 2_1:-14462531 Msa0196880:CDS
TGTTGGTTGTGTTCATTTGA+AGG 0.504024 2_1:+14464825 None:intergenic
CAGAATCAGAAACACAAGGC+TGG 0.504762 2_1:-14463669 Msa0196880:CDS
ATTACGTACCTCAGTAGTCT+TGG 0.513802 2_1:+14464527 None:intergenic
AATAGGAAACATTCTATCGT+TGG 0.514918 2_1:+14464953 None:intergenic
AGAATCAGAAACACAAGGCT+GGG 0.517077 2_1:-14463668 Msa0196880:CDS
CCATTGCTATTCCTCATCTG+AGG 0.520104 2_1:+14463715 None:intergenic
GTGAGATCTAATGTAACAGT+AGG 0.521520 2_1:+14462861 None:intergenic
TTATTATATGGACAAAGCAT+GGG 0.526634 2_1:-14465066 Msa0196880:exon
GATCAATCTGTAGTAGATGA+TGG 0.527093 2_1:-14464579 Msa0196880:CDS
AATTGCAAGTGGAGCTTCAA+CGG 0.528483 2_1:-14464369 Msa0196880:CDS
ATATATAATAAACAAACAAA+AGG 0.528509 2_1:+14465088 None:intergenic
GTCACCGCCGTCTTCGCCGT+TGG 0.533790 2_1:+14464899 None:intergenic
GGATCAATGTCAAGTGCAGA+TGG 0.534800 2_1:-14462966 Msa0196880:CDS
ATAGCAATGGTAAAACTGGT+AGG 0.540414 2_1:-14463702 Msa0196880:CDS
AGAGAAGAAATCGACTTCAC+CGG 0.540783 2_1:+14464866 None:intergenic
ATCTTGGTAACAACATATGA+AGG 0.541003 2_1:-14463068 Msa0196880:CDS
TCCATTACCACCAGCAGCTA+TGG 0.541740 2_1:-14463033 Msa0196880:CDS
TTGTTGGGTTGGAGCTTGTG+TGG 0.544909 2_1:+14462656 None:intergenic
CGTAACACCAACGGCGAAGA+CGG 0.544973 2_1:-14464906 Msa0196880:CDS
GATGCCATTGCCATAGCTGC+TGG 0.545474 2_1:+14463023 None:intergenic
CCAAGGTGTTGGTGGAGCAA+TGG 0.549924 2_1:-14463839 Msa0196880:CDS
GAATCACCACACTGAAAATG+AGG 0.553361 2_1:-14464251 Msa0196880:intron
ACCAATAATGGATGAGATTG+CGG 0.554320 2_1:+14462536 None:intergenic
TGATATTGGATTTAACATGT+TGG 0.558451 2_1:+14464808 None:intergenic
CCATTGCTCCACCAACACCT+TGG 0.560146 2_1:+14463839 None:intergenic
ATTAACATGGATATTAGAAG+TGG 0.561723 2_1:+14464749 None:intergenic
CCTATCTCAAGAAATTGTCT+TGG 0.566117 2_1:+14463814 None:intergenic
TCAGCTTGCACAATTGCAAG+TGG 0.569056 2_1:-14464380 Msa0196880:intron
ATATAATTGCAGATAAGTGA+TGG 0.573518 2_1:-14463437 Msa0196880:intron
TCATGTTACCGGTAATTACA+CGG 0.577854 2_1:-14464308 Msa0196880:CDS
ACAACCTTCTTTAGCTGACT+CGG 0.578182 2_1:-14462616 Msa0196880:CDS
ATTAGGATCGGCGGTGATAG+CGG 0.582615 2_1:+14462578 None:intergenic
TTCTGTCCTTGAAAGAAACT+AGG 0.586929 2_1:+14462774 None:intergenic
ACATGGATATTAGAAGTGGA+AGG 0.594815 2_1:+14464753 None:intergenic
TAACATGCTTGCTGCTGCTG+AGG 0.595156 2_1:+14462995 None:intergenic
TAGCAATGGTAAAACTGGTA+GGG 0.595770 2_1:-14463701 Msa0196880:CDS
TAAGGAAGCTTACATTAACA+TGG 0.598862 2_1:+14464736 None:intergenic
TCGTTGGTATAAGTAGATGA+TGG 0.603216 2_1:+14464969 None:intergenic
AACCTTACCCGTAACACCAA+CGG 0.603945 2_1:-14464915 Msa0196880:CDS
AATGAGAAAAGCTCGTGTCT+CGG 0.604308 2_1:-14463578 Msa0196880:CDS
TCTAATGTAACAGTAGGGAA+TGG 0.608110 2_1:+14462867 None:intergenic
GGCTTTGCAGATGCAACTTG+TGG 0.608912 2_1:-14464287 Msa0196880:CDS
CTGACCGAGTCAGCTAAAGA+AGG 0.612594 2_1:+14462612 None:intergenic
GGTTTACAACTTGCAAACAC+CGG 0.613072 2_1:-14464606 Msa0196880:CDS
TGAGATCTAATGTAACAGTA+GGG 0.618128 2_1:+14462862 None:intergenic
TAATTTCACCGCTGTTCTCG+CGG 0.622337 2_1:-14462559 Msa0196880:CDS
GATCAAACACACCTCAGATG+AGG 0.626860 2_1:-14463726 Msa0196880:CDS
ACCACCAGCAGCTATGGCAA+TGG 0.626876 2_1:-14463027 Msa0196880:CDS
ATAGGTTCAACGTTGTGCCG+AGG 0.627663 2_1:-14463099 Msa0196880:intron
GTTGCCATACTTGTTGAACA+AGG 0.630595 2_1:+14462906 None:intergenic
TATAGATGCACTATGGCAGT+CGG 0.632166 2_1:-14463353 Msa0196880:CDS
TGATGAAATGGTGCATGTTG+AGG 0.633017 2_1:+14462801 None:intergenic
TAGCTGCTGGTGGTAATGGA+TGG 0.633923 2_1:+14463036 None:intergenic
GCAATCTCATCCATTATTGG+TGG 0.633949 2_1:-14462534 Msa0196880:CDS
AACAAGGAACCTAAGAACAA+AGG 0.634270 2_1:+14462424 None:intergenic
GAATCAGAAACACAAGGCTG+GGG 0.640268 2_1:-14463667 Msa0196880:CDS
AGCGGTGAAATTAGGATCGG+CGG 0.644865 2_1:+14462569 None:intergenic
AACAGCGGTGAAATTAGGAT+CGG 0.645945 2_1:+14462566 None:intergenic
AGGATCGGCGGTGATAGCGG+CGG 0.668148 2_1:+14462581 None:intergenic
TAAGTGATGGATGCCAATGG+AGG 0.670782 2_1:-14463424 Msa0196880:CDS
AACACCAACGGCGAAGACGG+CGG 0.671264 2_1:-14464903 Msa0196880:CDS
GTGCATCTATAGTATGCTCG+AGG 0.675667 2_1:+14463365 None:intergenic
CCTCAGATGAGGAATAGCAA+TGG 0.676716 2_1:-14463715 Msa0196880:CDS
TATTATATGGACAAAGCATG+GGG 0.678619 2_1:-14465065 Msa0196880:exon
GATTGCGGCCGCGAGAACAG+CGG 0.680703 2_1:+14462551 None:intergenic
GCCATTGCCATAGCTGCTGG+TGG 0.689582 2_1:+14463026 None:intergenic
TAAACGTGCCAAGACTACTG+AGG 0.716111 2_1:-14464535 Msa0196880:intron
AGATAAGTGATGGATGCCAA+TGG 0.716557 2_1:-14463427 Msa0196880:CDS
AGTCCAGAATCAGAAACACA+AGG 0.719780 2_1:-14463673 Msa0196880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATATATTTTTAAAAA+AGG + chr2_1:14464993-14465012 None:intergenic 0.0%
!! ATATATAATAAACAAACAAA+AGG + chr2_1:14462288-14462307 None:intergenic 10.0%
!!! AATATTTTATCATTGAATTT+TGG + chr2_1:14462683-14462702 None:intergenic 10.0%
!! AATTAATATTGTTAAAATTC+AGG - chr2_1:14463483-14463502 Msa0196880:intron 10.0%
!! AGAAATATGAGAAATTAATA+AGG + chr2_1:14462658-14462677 None:intergenic 15.0%
!! AATTAAATCACAATTGATTA+AGG - chr2_1:14463864-14463883 Msa0196880:CDS 15.0%
!!! ATTGATGTTTTTTTGTTAAT+AGG - chr2_1:14464256-14464275 Msa0196880:CDS 15.0%
!! TAATATTTATCTGAAAAACA+AGG + chr2_1:14464968-14464987 None:intergenic 15.0%
!! TAAATCCAATATCATCAAAA+AGG - chr2_1:14462574-14462593 Msa0196880:CDS 20.0%
!! TTTGTTCAAATATTATAGAC+TGG - chr2_1:14462746-14462765 Msa0196880:CDS 20.0%
!! GTTTATATATCAATTTCATC+TGG + chr2_1:14462959-14462978 None:intergenic 20.0%
!! TATGGAATTCAAATCTTAAA+AGG - chr2_1:14463243-14463262 Msa0196880:intron 20.0%
!! CAATATGGCATATAATATAA+GGG + chr2_1:14463449-14463468 None:intergenic 20.0%
!! TTATTAACATGTTACCAATA+TGG + chr2_1:14463464-14463483 None:intergenic 20.0%
!!! TTTGAAATTGTAATGGATTT+GGG + chr2_1:14464550-14464569 None:intergenic 20.0%
!! TATAATCAATCTAAATTCTC+TGG - chr2_1:14464653-14464672 Msa0196880:intron 20.0%
!!! ATTATTCCTTTTTTTGTACA+TGG - chr2_1:14465008-14465027 Msa0196880:CDS 20.0%
!!! TTATTCCTTTTTTTGTACAT+GGG - chr2_1:14465009-14465028 Msa0196880:CDS 20.0%
!!! TTTTTCACATTGAATAATCT+AGG - chr2_1:14465150-14465169 Msa0196880:five_prime_UTR 20.0%
! ATTAGATATGTTGAAGGAAT+AGG + chr2_1:14462222-14462241 None:intergenic 25.0%
! AAAGAGATTAGATATGTTGA+AGG + chr2_1:14462228-14462247 None:intergenic 25.0%
! ATTATTATATGGACAAAGCA+TGG - chr2_1:14462306-14462325 Msa0196880:three_prime_UTR 25.0%
! TTATTATATGGACAAAGCAT+GGG - chr2_1:14462307-14462326 Msa0196880:three_prime_UTR 25.0%
!! GATAGAATGTTTCCTATTTT+AGG - chr2_1:14462425-14462444 Msa0196880:three_prime_UTR 25.0%
! TGATATTGGATTTAACATGT+TGG + chr2_1:14462568-14462587 None:intergenic 25.0%
!!! AATCTCCTTTTTGATGATAT+TGG + chr2_1:14462582-14462601 None:intergenic 25.0%
! ATTAACATGGATATTAGAAG+TGG + chr2_1:14462627-14462646 None:intergenic 25.0%
! TTAGTGTATGTTTGATATCA+CGG - chr2_1:14462874-14462893 Msa0196880:CDS 25.0%
! GACTTTGTAAACTCAAAATA+TGG - chr2_1:14463225-14463244 Msa0196880:intron 25.0%
! CCAATATGGCATATAATATA+AGG + chr2_1:14463450-14463469 None:intergenic 25.0%
! CCTTATATTATATGCCATAT+TGG - chr2_1:14463447-14463466 Msa0196880:intron 25.0%
!!! AATATTTTCTGAGACTTGTT+TGG + chr2_1:14463733-14463752 None:intergenic 25.0%
!! TTTCTAACTGAATTTTGTGA+TGG - chr2_1:14463911-14463930 Msa0196880:intron 25.0%
! ATATAATTGCAGATAAGTGA+TGG - chr2_1:14463936-14463955 Msa0196880:intron 25.0%
! AATTTAGAAAAAGCGACATT+TGG + chr2_1:14464124-14464143 None:intergenic 25.0%
! ATAGCTCTTGCTAATAAATT+TGG + chr2_1:14464443-14464462 None:intergenic 25.0%
!!! CTTTGAAATTGTAATGGATT+TGG + chr2_1:14464551-14464570 None:intergenic 25.0%
!! AATACAATTAGCAACTTTTC+AGG - chr2_1:14464914-14464933 Msa0196880:CDS 25.0%
! CTAAATATTCCTTTGTTCTT+AGG - chr2_1:14464940-14464959 Msa0196880:CDS 25.0%
!!! TCTTTTTAGTCCATATGTTT+TGG - chr2_1:14465058-14465077 Msa0196880:CDS 25.0%
!!! CTTTTTAGTCCATATGTTTT+GGG - chr2_1:14465059-14465078 Msa0196880:CDS 25.0%
TATTATATGGACAAAGCATG+GGG - chr2_1:14462308-14462327 Msa0196880:three_prime_UTR 30.0%
!!! GCTGTTTTGAAGGTAAAAAA+GGG + chr2_1:14462385-14462404 None:intergenic 30.0%
AATAGGAAACATTCTATCGT+TGG + chr2_1:14462423-14462442 None:intergenic 30.0%
TTGACAGGAAATCCTAAAAT+AGG + chr2_1:14462440-14462459 None:intergenic 30.0%
TAAGGAAGCTTACATTAACA+TGG + chr2_1:14462640-14462659 None:intergenic 30.0%
! TAATTACCTCATTTTCAGTG+TGG + chr2_1:14463131-14463150 None:intergenic 30.0%
TTCATGACATGTCAATTTAG+TGG - chr2_1:14463193-14463212 Msa0196880:intron 30.0%
TATACTAACATCTCATATGC+AGG + chr2_1:14463321-14463340 None:intergenic 30.0%
GAGGAAATATGGACAAAAAA+TGG - chr2_1:14463968-14463987 Msa0196880:intron 30.0%
TATGGACAAAAAATGGCTAA+AGG - chr2_1:14463975-14463994 Msa0196880:intron 30.0%
!! CATTTGGACTATTTTTCTAG+TGG + chr2_1:14464108-14464127 None:intergenic 30.0%
TTAGTGACGAAATTAGAGAT+AGG - chr2_1:14464143-14464162 Msa0196880:intron 30.0%
! ATCTTGGTAACAACATATGA+AGG - chr2_1:14464305-14464324 Msa0196880:CDS 30.0%
TGAGATCTAATGTAACAGTA+GGG + chr2_1:14464514-14464533 None:intergenic 30.0%
!! TGAGGTCTTTGAAATTGTAA+TGG + chr2_1:14464557-14464576 None:intergenic 30.0%
AAACTAGGTACTTGATGAAA+TGG + chr2_1:14464587-14464606 None:intergenic 30.0%
ACTTTCCCATGTACAAAAAA+AGG + chr2_1:14465017-14465036 None:intergenic 30.0%
TGAGAGTGAGATATTGGAAT+TGG + chr2_1:14462362-14462381 None:intergenic 35.0%
!!! GGCTGTTTTGAAGGTAAAAA+AGG + chr2_1:14462386-14462405 None:intergenic 35.0%
TCGTTGGTATAAGTAGATGA+TGG + chr2_1:14462407-14462426 None:intergenic 35.0%
! TGTTGGTTGTGTTCATTTGA+AGG + chr2_1:14462551-14462570 None:intergenic 35.0%
ACATGGATATTAGAAGTGGA+AGG + chr2_1:14462623-14462642 None:intergenic 35.0%
TACTACAGATTGATCACTTC+CGG + chr2_1:14462789-14462808 None:intergenic 35.0%
GATCAATCTGTAGTAGATGA+TGG - chr2_1:14462794-14462813 Msa0196880:CDS 35.0%
TCATGTTACCGGTAATTACA+CGG - chr2_1:14463065-14463084 Msa0196880:CDS 35.0%
GGTTGTTAATGCAAAAACTG+AGG - chr2_1:14463504-14463523 Msa0196880:intron 35.0%
AAAACTGAGGAGAAAAACCA+AGG - chr2_1:14463517-14463536 Msa0196880:intron 35.0%
CCTATCTCAAGAAATTGTCT+TGG + chr2_1:14463562-14463581 None:intergenic 35.0%
CCAAGACAATTTCTTGAGAT+AGG - chr2_1:14463559-14463578 Msa0196880:CDS 35.0%
CTTGAGATAGGTACTACTAA+TGG - chr2_1:14463571-14463590 Msa0196880:CDS 35.0%
AGGAATAGCAATGGTAAAAC+TGG - chr2_1:14463667-14463686 Msa0196880:CDS 35.0%
ATAGCAATGGTAAAACTGGT+AGG - chr2_1:14463671-14463690 Msa0196880:CDS 35.0%
TAGCAATGGTAAAACTGGTA+GGG - chr2_1:14463672-14463691 Msa0196880:CDS 35.0%
ATTTGCTTGATCTGCAACAT+TGG + chr2_1:14463764-14463783 None:intergenic 35.0%
TTTGTCCATATTTCCTCCAT+TGG + chr2_1:14463965-14463984 None:intergenic 35.0%
AGCATACTATAGATGCACTA+TGG - chr2_1:14464013-14464032 Msa0196880:intron 35.0%
!! TACCAAGATTGTTTTGTCCT+CGG + chr2_1:14464294-14464313 None:intergenic 35.0%
TCTTCCTTGTTCAACAAGTA+TGG - chr2_1:14464463-14464482 Msa0196880:intron 35.0%
TCTAATGTAACAGTAGGGAA+TGG + chr2_1:14464509-14464528 None:intergenic 35.0%
GTGAGATCTAATGTAACAGT+AGG + chr2_1:14464515-14464534 None:intergenic 35.0%
CAAGTACCTAGTTTCTTTCA+AGG - chr2_1:14464593-14464612 Msa0196880:CDS 35.0%
TTCTGTCCTTGAAAGAAACT+AGG + chr2_1:14464602-14464621 None:intergenic 35.0%
CAATTGTCTCATCAAGAAGT+TGG - chr2_1:14464680-14464699 Msa0196880:intron 35.0%
!! ACCAATAATGGATGAGATTG+CGG + chr2_1:14464840-14464859 None:intergenic 35.0%
! TGTTGTTGCTATTGTTTGCA+TGG + chr2_1:14464868-14464887 None:intergenic 35.0%
AACAAGGAACCTAAGAACAA+AGG + chr2_1:14464952-14464971 None:intergenic 35.0%
!!! TCCATATGTTTTGGGATTGA+GGG - chr2_1:14465067-14465086 Msa0196880:exon 35.0%
AAAGGGTGAGAGTGAGATAT+TGG + chr2_1:14462368-14462387 None:intergenic 40.0%
!! GTAGATGATGGCTGTTTTGA+AGG + chr2_1:14462395-14462414 None:intergenic 40.0%
! AGAGAAGAAATCGACTTCAC+CGG + chr2_1:14462510-14462529 None:intergenic 40.0%
! AGAAGTGGAAGGCTTTTCAT+CGG + chr2_1:14462612-14462631 None:intergenic 40.0%
GGTTTACAACTTGCAAACAC+CGG - chr2_1:14462767-14462786 Msa0196880:CDS 40.0%
ATTACGTACCTCAGTAGTCT+TGG + chr2_1:14462849-14462868 None:intergenic 40.0%
AATTGCAAGTGGAGCTTCAA+CGG - chr2_1:14463004-14463023 Msa0196880:CDS 40.0%
GAGATGCTAAGTCATGTTAC+CGG - chr2_1:14463054-14463073 Msa0196880:CDS 40.0%
GAATCACCACACTGAAAATG+AGG - chr2_1:14463122-14463141 Msa0196880:intron 40.0%
AGTCCAGAATCAGAAACACA+AGG - chr2_1:14463700-14463719 Msa0196880:CDS 40.0%
AGAATCAGAAACACAAGGCT+GGG - chr2_1:14463705-14463724 Msa0196880:CDS 40.0%
AATGAGAAAAGCTCGTGTCT+CGG - chr2_1:14463795-14463814 Msa0196880:CDS 40.0%
TGCTAGATCAGAAGCTTCAA+TGG - chr2_1:14463822-14463841 Msa0196880:CDS 40.0%
!! AGATAAGTGATGGATGCCAA+TGG - chr2_1:14463946-14463965 Msa0196880:intron 40.0%
TATAGATGCACTATGGCAGT+CGG - chr2_1:14464020-14464039 Msa0196880:intron 40.0%
AAACTCACTTGTTTGCGAAC+TGG + chr2_1:14464050-14464069 None:intergenic 40.0%
! GTTGCCATACTTGTTGAACA+AGG + chr2_1:14464470-14464489 None:intergenic 40.0%
TGATGAAATGGTGCATGTTG+AGG + chr2_1:14464575-14464594 None:intergenic 40.0%
ACAACCTTCTTTAGCTGACT+CGG - chr2_1:14464757-14464776 Msa0196880:CDS 40.0%
AACAGCGGTGAAATTAGGAT+CGG + chr2_1:14464810-14464829 None:intergenic 40.0%
GCAATCTCATCCATTATTGG+TGG - chr2_1:14464839-14464858 Msa0196880:CDS 40.0%
ATCTCATCCATTATTGGTGG+TGG - chr2_1:14464842-14464861 Msa0196880:CDS 40.0%
!!! GTCCATATGTTTTGGGATTG+AGG - chr2_1:14465066-14465085 Msa0196880:exon 40.0%
!!! CCATATGTTTTGGGATTGAG+GGG - chr2_1:14465068-14465087 Msa0196880:exon 40.0%
GGAATAGGAGAGAGTAGAGA+GGG + chr2_1:14462207-14462226 None:intergenic 45.0%
AGGAATAGGAGAGAGTAGAG+AGG + chr2_1:14462208-14462227 None:intergenic 45.0%
AACCTTACCCGTAACACCAA+CGG - chr2_1:14462458-14462477 Msa0196880:CDS 45.0%
!! CGACTTCACCGGTTATTTTC+CGG + chr2_1:14462499-14462518 None:intergenic 45.0%
TAAACGTGCCAAGACTACTG+AGG - chr2_1:14462838-14462857 Msa0196880:CDS 45.0%
TCAGCTTGCACAATTGCAAG+TGG - chr2_1:14462993-14463012 Msa0196880:CDS 45.0%
CTGCAAAGCCGTGTAATTAC+CGG + chr2_1:14463076-14463095 None:intergenic 45.0%
GAGGAGAAAAACCAAGGTGT+TGG - chr2_1:14463523-14463542 Msa0196880:intron 45.0%
!! GAGAAAAACCAAGGTGTTGG+TGG - chr2_1:14463526-14463545 Msa0196880:intron 45.0%
GATCAAACACACCTCAGATG+AGG - chr2_1:14463647-14463666 Msa0196880:CDS 45.0%
! CCATTGCTATTCCTCATCTG+AGG + chr2_1:14463661-14463680 None:intergenic 45.0%
CCTCAGATGAGGAATAGCAA+TGG - chr2_1:14463658-14463677 Msa0196880:CDS 45.0%
! CAGCCTTGTGTTTCTGATTC+TGG + chr2_1:14463706-14463725 None:intergenic 45.0%
CAGAATCAGAAACACAAGGC+TGG - chr2_1:14463704-14463723 Msa0196880:CDS 45.0%
GAATCAGAAACACAAGGCTG+GGG - chr2_1:14463706-14463725 Msa0196880:CDS 45.0%
!! TAAGTGATGGATGCCAATGG+AGG - chr2_1:14463949-14463968 Msa0196880:intron 45.0%
GGATGCCAATGGAGGAAATA+TGG - chr2_1:14463957-14463976 Msa0196880:intron 45.0%
CTATAGTATGCTCGAGGACA+TGG + chr2_1:14464005-14464024 None:intergenic 45.0%
GTGCATCTATAGTATGCTCG+AGG + chr2_1:14464011-14464030 None:intergenic 45.0%
TGCCGAGGACAAAACAATCT+TGG - chr2_1:14464289-14464308 Msa0196880:CDS 45.0%
GCAGCAAGCATGTTACTATC+AGG - chr2_1:14464386-14464405 Msa0196880:intron 45.0%
GGATCAATGTCAAGTGCAGA+TGG - chr2_1:14464407-14464426 Msa0196880:intron 45.0%
! TTGCTGCTGCTGTTGTTGTT+GGG + chr2_1:14464735-14464754 None:intergenic 45.0%
TAATTTCACCGCTGTTCTCG+CGG - chr2_1:14464814-14464833 Msa0196880:CDS 45.0%
GCCGCAATCTCATCCATTAT+TGG - chr2_1:14464836-14464855 Msa0196880:CDS 45.0%
CCCCTCAATCCCAAAACATA+TGG + chr2_1:14465071-14465090 None:intergenic 45.0%
!! GTTTATTATATATTATTATA+TGG - chr2_1:14462295-14462314 Msa0196880:three_prime_UTR 5.0%
GTGTTACGGGTAAGGTTGAC+AGG + chr2_1:14462455-14462474 None:intergenic 50.0%
GGCTTTGCAGATGCAACTTG+TGG - chr2_1:14463086-14463105 Msa0196880:CDS 50.0%
ATAGGTTCAACGTTGTGCCG+AGG - chr2_1:14464274-14464293 Msa0196880:CDS 50.0%
!! TAGCTGCTGGTGGTAATGGA+TGG + chr2_1:14464340-14464359 None:intergenic 50.0%
TCCATTACCACCAGCAGCTA+TGG - chr2_1:14464340-14464359 Msa0196880:CDS 50.0%
! TAACATGCTTGCTGCTGCTG+AGG + chr2_1:14464381-14464400 None:intergenic 50.0%
!! TTGTTGGGTTGGAGCTTGTG+TGG + chr2_1:14464720-14464739 None:intergenic 50.0%
! TGCTGCTGTTGTTGTTGGGT+TGG + chr2_1:14464731-14464750 None:intergenic 50.0%
GTTGCTGCTGCTGTTGTTGT+TGG + chr2_1:14464736-14464755 None:intergenic 50.0%
CTGACCGAGTCAGCTAAAGA+AGG + chr2_1:14464764-14464783 None:intergenic 50.0%
ATTAGGATCGGCGGTGATAG+CGG + chr2_1:14464798-14464817 None:intergenic 50.0%
AGCGGTGAAATTAGGATCGG+CGG + chr2_1:14464807-14464826 None:intergenic 50.0%
GCGAGAACAGCGGTGAAATT+AGG + chr2_1:14464815-14464834 None:intergenic 50.0%
TGCATGGCCACCACCAATAA+TGG + chr2_1:14464852-14464871 None:intergenic 50.0%
AGGAGAGAGTAGAGAGGGAG+AGG + chr2_1:14462202-14462221 None:intergenic 55.0%
!! GTCTTCGCCGTTGGTGTTAC+GGG + chr2_1:14462468-14462487 None:intergenic 55.0%
!! CGTCTTCGCCGTTGGTGTTA+CGG + chr2_1:14462469-14462488 None:intergenic 55.0%
CGTAACACCAACGGCGAAGA+CGG - chr2_1:14462467-14462486 Msa0196880:CDS 55.0%
GGCGGTGACCGGAAAATAAC+CGG - chr2_1:14462488-14462507 Msa0196880:CDS 55.0%
CCATTGCTCCACCAACACCT+TGG + chr2_1:14463537-14463556 None:intergenic 55.0%
!! CCAAGGTGTTGGTGGAGCAA+TGG - chr2_1:14463534-14463553 Msa0196880:intron 55.0%
GCCATAGCTGCTGGTGGTAA+TGG + chr2_1:14464344-14464363 None:intergenic 55.0%
ACCACCAGCAGCTATGGCAA+TGG - chr2_1:14464346-14464365 Msa0196880:CDS 55.0%
GATGCCATTGCCATAGCTGC+TGG + chr2_1:14464353-14464372 None:intergenic 55.0%
!! CGCCGTTGGTGTTACGGGTA+AGG + chr2_1:14462463-14462482 None:intergenic 60.0%
AACACCAACGGCGAAGACGG+CGG - chr2_1:14462470-14462489 Msa0196880:CDS 60.0%
GCCATTGCCATAGCTGCTGG+TGG + chr2_1:14464350-14464369 None:intergenic 60.0%
!! AGGATCGGCGGTGATAGCGG+CGG + chr2_1:14464795-14464814 None:intergenic 65.0%
GATTGCGGCCGCGAGAACAG+CGG + chr2_1:14464825-14464844 None:intergenic 65.0%
GTCACCGCCGTCTTCGCCGT+TGG + chr2_1:14462477-14462496 None:intergenic 70.0%
ACGGCGAAGACGGCGGTGAC+CGG - chr2_1:14462477-14462496 Msa0196880:CDS 70.0%
!! ATCGGCGGTGATAGCGGCGG+TGG + chr2_1:14464792-14464811 None:intergenic 70.0%
!! GGCGGTGATAGCGGCGGTGG+CGG + chr2_1:14464789-14464808 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 14462195 14465200 14462195 ID=Msa0196880;Name=Msa0196880
chr2_1 mRNA 14462195 14465200 14462195 ID=Msa0196880-mRNA-1;Parent=Msa0196880;Name=Msa0196880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=119|1|1|1|1|1|6|257|564
chr2_1 exon 14462195 14463117 14462195 ID=Msa0196880-mRNA-1:exon:6127;Parent=Msa0196880-mRNA-1
chr2_1 exon 14463334 14463447 14463334 ID=Msa0196880-mRNA-1:exon:6126;Parent=Msa0196880-mRNA-1
chr2_1 exon 14463552 14463890 14463552 ID=Msa0196880-mRNA-1:exon:6125;Parent=Msa0196880-mRNA-1
chr2_1 exon 14464252 14464398 14464252 ID=Msa0196880-mRNA-1:exon:6124;Parent=Msa0196880-mRNA-1
chr2_1 exon 14464536 14464631 14464536 ID=Msa0196880-mRNA-1:exon:6123;Parent=Msa0196880-mRNA-1
chr2_1 exon 14464749 14465200 14464749 ID=Msa0196880-mRNA-1:exon:6122;Parent=Msa0196880-mRNA-1
chr2_1 five_prime_UTR 14465082 14465200 14465082 ID=Msa0196880-mRNA-1:five_prime_utr;Parent=Msa0196880-mRNA-1
chr2_1 CDS 14464749 14465081 14464749 ID=Msa0196880-mRNA-1:cds;Parent=Msa0196880-mRNA-1
chr2_1 CDS 14464536 14464631 14464536 ID=Msa0196880-mRNA-1:cds;Parent=Msa0196880-mRNA-1
chr2_1 CDS 14464252 14464398 14464252 ID=Msa0196880-mRNA-1:cds;Parent=Msa0196880-mRNA-1
chr2_1 CDS 14463552 14463890 14463552 ID=Msa0196880-mRNA-1:cds;Parent=Msa0196880-mRNA-1
chr2_1 CDS 14463334 14463447 14463334 ID=Msa0196880-mRNA-1:cds;Parent=Msa0196880-mRNA-1
chr2_1 CDS 14462452 14463117 14462452 ID=Msa0196880-mRNA-1:cds;Parent=Msa0196880-mRNA-1
chr2_1 three_prime_UTR 14462195 14462451 14462195 ID=Msa0196880-mRNA-1:three_prime_utr;Parent=Msa0196880-mRNA-1
Gene Sequence

>Msa0196880

ATGGACAAAGCATGGGGTCTAGCTCTTGATACTTCTTCATCTTCTCCAATTCCAATATCTCACTCTCACCCTTTTTTACCTTCAAAACAGCCATCATCTACTTATACCAACGATAGAATGTTTCCTATTTTAGGATTTCCTGTCAACCTTACCCGTAACACCAACGGCGAAGACGGCGGTGACCGGAAAATAACCGGTGAAGTCGATTTCTTCTCTGAAAGAAACAAACTATCACCTTCAAATGAACACAACCAACATGTTAAATCCAATATCATCAAAAAGGAGATTGTTTCAACCGATGAAAAGCCTTCCACTTCTAATATCCATGTTAATACTGGTTTACAACTTGCAAACACCGGAAGTGATCAATCTGTAGTAGATGATGGAGTTACATCTGATGCTGAAAATAAACGTGCCAAGACTACTGAGCTTGCACAATTGCAAGTGGAGCTTCAACGGATGAATTCAGAGAACAAAAAGCTGAAAGAGATGCTAAGTCATGTTACCGGTAATTACACGGCTTTGCAGATGCAACTTGTGGCATTAATGCAAAAGAATCACCACACTGAAAATGAGGTTGTTAATGCAAAAACTGAGGAGAAAAACCAAGGTGTTGGTGGAGCAATGGTACCAAGACAATTTCTTGAGATAGGTACTACTAATGGAACAGCAGAAGTTGAAGATCAAGTATCAAATTCATCATCTGATGAAAGAACAAGATCAAACACACCTCAGATGAGGAATAGCAATGGTAAAACTGGTAGGGAAGACAGTCCAGAATCAGAAACACAAGGCTGGGGACCAAACAAGTCTCAGAAAATATTGAACTCTTCCAATGTTGCAGATCAAGCAAATACAGAAGCTACAATGAGAAAAGCTCGTGTCTCGGTTCGTGCTAGATCAGAAGCTTCAATGATAAGTGATGGATGCCAATGGAGGAAATATGGACAAAAAATGGCTAAAGGAAATCCATGTCCTCGAGCATACTATAGATGCACTATGGCAGTCGGTTGTCCAGTTCGCAAACAAGTTCAACGTTGTGCCGAGGACAAAACAATCTTGGTAACAACATATGAAGGAACACATAACCATCCATTACCACCAGCAGCTATGGCAATGGCATCAACAACCTCAGCAGCAGCAAGCATGTTACTATCAGGATCAATGTCAAGTGCAGATGGAATAATGACACCAAATTTATTAGCAAGAGCTATTCTTCCTTGTTCAACAAGTATGGCAACACTTTCAGCTTCAGCACCATTCCCTACTGTTACATTAGATCTCACACAAAATTCAAACCCAAATCCATTACAATTTCAAAGACCTCAACATGCACCATTTCATCAAGTACCTAGTTTCTTTCAAGGACAGAATCAGAATTTTGCACAAGCAGCTGCATCACTTTATAATCAATCTAAATTCTCTGGTCTTCAATTGTCTCATCAAGAAGTTGGTTCTTCTCATTTAACCACACAAGCTCCAACCCAACAACAACAGCAGCAGCAACAACAACCTTCTTTAGCTGACTCGGTCAGCGCCGCCACCGCCGCTATCACCGCCGATCCTAATTTCACCGCTGTTCTCGCGGCCGCAATCTCATCCATTATTGGTGGTGGCCATGCAAACAATAGCAACAACAGCAACAACAACAACAGCAATAGCAGAAATACAATTAGCAACTTTTCAGGAAACTAA
Protein sequence

>Msa0196880

MDKAWGLALDTSSSSPIPISHSHPFLPSKQPSSTYTNDRMFPILGFPVNLTRNTNGEDGGDRKITGEVDFFSERNKLSPSNEHNQHVKSNIIKKEIVSTDEKPSTSNIHVNTGLQLANTGSDQSVVDDGVTSDAENKRAKTTELAQLQVELQRMNSENKKLKEMLSHVTGNYTALQMQLVALMQKNHHTENEVVNAKTEEKNQGVGGAMVPRQFLEIGTTNGTAEVEDQVSNSSSDERTRSNTPQMRNSNGKTGREDSPESETQGWGPNKSQKILNSSNVADQANTEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSADGIMTPNLLARAILPCSTSMATLSASAPFPTVTLDLTQNSNPNPLQFQRPQHAPFHQVPSFFQGQNQNFAQAAASLYNQSKFSGLQLSHQEVGSSHLTTQAPTQQQQQQQQQPSLADSVSAATAAITADPNFTAVLAAAISSIIGGGHANNSNNSNNNNSNSRNTISNFSGN*