AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691480 MtrunA17_Chr4g0040751 98.673 678 9 0 1 678 1 678 0.0 1396
Msa0691480 MtrunA17_Chr8g0382531 36.893 618 343 14 82 664 68 673 6.39e-119 370
Msa0691480 MtrunA17_Chr5g0399451 30.996 542 318 14 153 663 101 617 5.90e-74 251
Msa0691480 MtrunA17_Chr4g0055941 29.490 529 336 13 158 663 103 617 1.50e-67 234
Msa0691480 MtrunA17_Chr6g0474461 91.803 61 5 0 73 133 1 61 1.62e-33 122
Msa0691480 MtrunA17_Chr2g0294151 76.000 50 12 0 98 147 1 50 6.12e-19 82.4
Msa0691480 MtrunA17_Chr7g0242641 23.263 331 208 11 144 474 51 335 6.56e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691480 AT1G06290.1 71.935 677 187 2 1 676 1 675 0.0 1057
Msa0691480 AT1G06310.1 69.379 676 204 2 1 675 1 674 0.0 1014
Msa0691480 AT5G65110.1 37.851 605 334 14 97 674 95 684 1.97e-118 370
Msa0691480 AT5G65110.2 38.750 560 305 12 97 630 95 642 2.30e-113 355
Msa0691480 AT3G06690.1 65.269 167 58 0 510 676 21 187 4.00e-75 239
Msa0691480 AT4G16760.2 31.061 528 329 13 158 663 90 604 4.72e-68 235
Msa0691480 AT4G16760.1 30.755 530 335 12 153 663 101 617 5.07e-68 235
Msa0691480 AT2G35690.1 29.050 537 339 12 151 663 99 617 7.16e-64 224

Find 220 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGCTATTCGGATATT+TGG 0.062882 4_4:-59633641 None:intergenic
AAACCGTATTGGTCAATTTA+AGG 0.139356 4_4:+59634977 Msa0691480:CDS
TATTATTCACATTTCCTTAT+TGG 0.145717 4_4:-59637120 None:intergenic
ATGACAAACTCACCAGAATT+TGG 0.201015 4_4:-59633333 None:intergenic
GGTCACAAAATTGGTTTAAA+TGG 0.204440 4_4:+59633665 Msa0691480:CDS
CATCAAGAGCAGTGAATTTC+AGG 0.216438 4_4:+59636257 Msa0691480:CDS
GCTGAATGTGGTCACAAAAT+TGG 0.219965 4_4:+59633656 Msa0691480:CDS
GGGTGGGGCTGTAAAGTTTC+TGG 0.235532 4_4:+59633078 Msa0691480:CDS
TTGGCTCTTCATGAGGTTAT+TGG 0.237880 4_4:+59632334 Msa0691480:CDS
AGCAATACTGAAAACATTTA+TGG 0.246846 4_4:+59636596 Msa0691480:CDS
AACAAACCATTTAAAGGTCT+TGG 0.280881 4_4:+59636177 Msa0691480:CDS
TTCCATCTGAATCCCTGATT+TGG 0.280970 4_4:-59633610 None:intergenic
CAATGTGGATAATATTTGTT+AGG 0.282218 4_4:+59637277 Msa0691480:three_prime_UTR
TCTAATCCAAGACCTTTAAA+TGG 0.282466 4_4:-59636183 None:intergenic
GACGCTGCCTTTCTCCGATA+TGG 0.285263 4_4:+59636836 Msa0691480:CDS
TCTCCTCTGCAGGATGTCTT+AGG 0.292318 4_4:+59636773 Msa0691480:intron
CAAATACGCAATTCGTTTCA+TGG 0.303772 4_4:-59632248 None:intergenic
TCAATAGGTCTCGCTCTCTT+AGG 0.305094 4_4:-59636381 None:intergenic
CTGAAATTCACTGCTCTTGA+TGG 0.308244 4_4:-59636256 None:intergenic
CTTGCCTTGGTTAACTCCTT+TGG 0.312555 4_4:+59636935 Msa0691480:CDS
GAATAATATGCGTACTCTTC+AGG 0.319191 4_4:+59634825 Msa0691480:CDS
TGGATTTGATTCGGAGAGTT+CGG 0.330563 4_4:-59632050 None:intergenic
ATTCAGCTATTCGGATATTT+GGG 0.337889 4_4:-59633640 None:intergenic
GGTTTAAATGGAGTTGATAA+TGG 0.338212 4_4:+59633677 Msa0691480:CDS
GAAGATCGCGACTGGCTATT+CGG 0.342629 4_4:+59632124 Msa0691480:CDS
AAAAGTGAATTCTAGTCATT+AGG 0.348637 4_4:-59637161 None:intergenic
GATGAAGATAGCGTGTGTTT+TGG 0.350490 4_4:-59631879 None:intergenic
TCCATCTGAATCCCTGATTT+GGG 0.353613 4_4:-59633609 None:intergenic
TGAGCCCTATTGCATACAAC+TGG 0.357438 4_4:+59636975 Msa0691480:CDS
CTTTGAGATGCGAAAGCTCT+TGG 0.365539 4_4:+59632087 Msa0691480:CDS
GGAATTTAACAAATTCTCTC+TGG 0.369490 4_4:-59633826 None:intergenic
GGATTTGATTCGGAGAGTTC+GGG 0.370117 4_4:-59632049 None:intergenic
TGTGACCACATTCAGCTATT+CGG 0.372695 4_4:-59633649 None:intergenic
GAAACGAATTGCGTATTTGT+TGG 0.373037 4_4:+59632252 Msa0691480:CDS
CAACATAAACGGAAGCAATC+AGG 0.373818 4_4:+59633568 Msa0691480:CDS
TGAAATTTGGTGTTGGGAAA+TGG 0.374456 4_4:-59631824 None:intergenic
GAATTCCAACAGCTTATTGC+AGG 0.374668 4_4:-59637307 None:intergenic
TTATCAGCTTGCTGAGGACT+TGG 0.379509 4_4:+59636554 Msa0691480:CDS
AACCGTATTGGTCAATTTAA+GGG 0.379544 4_4:+59634978 Msa0691480:CDS
TGGGTCGTGGCGGAGGTGAT+TGG 0.379947 4_4:-59631975 None:intergenic
TCTGCATGTGATTGAGGTAT+TGG 0.380289 4_4:+59637049 Msa0691480:three_prime_UTR
TAATAGTGAAATTTGGTGTT+GGG 0.380647 4_4:-59631830 None:intergenic
TTCTTAGCCCCTTTGACCTC+TGG 0.384312 4_4:+59634029 Msa0691480:CDS
TGGAGGATTGTTGGTGCGGT+TGG 0.385269 4_4:-59631998 None:intergenic
TCAACCCAGTTGTATGCAAT+AGG 0.394427 4_4:-59636980 None:intergenic
CCCTCTGTTGCTCCATGGAC+TGG 0.397331 4_4:-59632219 None:intergenic
AACTTCCTCAACTCTTCTTG+TGG 0.399283 4_4:-59632313 None:intergenic
TCCATGGACTGGTTATAATC+AGG 0.401283 4_4:-59632208 None:intergenic
GAGTTGATAATGGCCGTATC+TGG 0.403465 4_4:+59633687 Msa0691480:CDS
AAGATCGCGACTGGCTATTC+GGG 0.408048 4_4:+59632125 Msa0691480:CDS
CATTGGTATATGCAGGGGTC+AGG 0.409692 4_4:-59637218 None:intergenic
ACTGGGTTGAGTCAAATTCT+TGG 0.409758 4_4:+59636993 Msa0691480:CDS
GCTCTTGGACGGTCACAATC+TGG 0.413012 4_4:+59632102 Msa0691480:CDS
CGAAGTTCAGCACATAGCTT+TGG 0.414228 4_4:-59636902 None:intergenic
AGTAAAACCTCAGGCCCATT+TGG 0.419355 4_4:-59634269 None:intergenic
ACTACTTATGATCCAAATTC+TGG 0.419459 4_4:+59633321 Msa0691480:CDS
AGGATTGTTGGTGCGGTTGG+TGG 0.420230 4_4:-59631995 None:intergenic
CATTCTCTTGCTGTTAAGCT+TGG 0.432008 4_4:+59632367 Msa0691480:CDS
CCGTGAAGCATGTGGAGGAC+AGG 0.433137 4_4:+59634941 Msa0691480:CDS
GAAATTTGGTGTTGGGAAAT+GGG 0.434319 4_4:-59631823 None:intergenic
GGATTGTTGGTGCGGTTGGT+GGG 0.435760 4_4:-59631994 None:intergenic
ATGATTTACCTTCAATGAAC+CGG 0.436593 4_4:-59636640 None:intergenic
CATCTCCCTCTGTTGCTCCA+TGG 0.436854 4_4:-59632224 None:intergenic
ACTTCCTCAACTCTTCTTGT+GGG 0.444218 4_4:-59632312 None:intergenic
GATAATGCATTGGTATATGC+AGG 0.449447 4_4:-59637225 None:intergenic
CTATAGCAAAACGTTTCAAT+AGG 0.454415 4_4:-59636396 None:intergenic
CTGTTGACAAGTATCCATAT+CGG 0.457876 4_4:-59636850 None:intergenic
CACCCTTAAATTGACCAATA+CGG 0.463490 4_4:-59634980 None:intergenic
CGGTTGGTGGGTCGTGGCGG+AGG 0.463795 4_4:-59631982 None:intergenic
TTAATAGTGAAATTTGGTGT+TGG 0.464670 4_4:-59631831 None:intergenic
CGTGGGTGGCTTACTGGTGA+TGG 0.467490 4_4:+59632289 Msa0691480:CDS
GAATGTTGTTGGATTTGATT+CGG 0.467551 4_4:-59632059 None:intergenic
CCACTTGTCATGGTGACGCT+TGG 0.472168 4_4:-59633104 None:intergenic
ACCGGCGGGAAGTCGACGGC+AGG 0.473101 4_4:+59632173 Msa0691480:CDS
GTAGAACTTGTTAACTGAGA+TGG 0.473386 4_4:-59636234 None:intergenic
CCTGTCCTCCACATGCTTCA+CGG 0.473869 4_4:-59634941 None:intergenic
TATTGTTTCTAGTGCATACA+AGG 0.474725 4_4:+59634789 Msa0691480:CDS
TTGGTGCGGTTGGTGGGTCG+TGG 0.475082 4_4:-59631988 None:intergenic
TGACGTGCATTCAACATTTG+AGG 0.475703 4_4:+59635007 Msa0691480:CDS
GCTATGTCTGAGTTGGGCCA+TGG 0.475827 4_4:+59633166 Msa0691480:CDS
TCAAAGGTGTCGAATGTTGT+TGG 0.478788 4_4:-59632070 None:intergenic
CCCATTTGGTGTAATAGAAA+AGG 0.481194 4_4:-59634255 None:intergenic
TTTACCAGCCGGTTCATTGA+AGG 0.481975 4_4:+59636632 Msa0691480:CDS
GCCAACTGAGTTATGCTCTC+GGG 0.483404 4_4:+59637251 Msa0691480:three_prime_UTR
AATAGACGTTGTTGATGACT+TGG 0.483886 4_4:-59634302 None:intergenic
TTACACGACCAGAGGTCAAA+GGG 0.484386 4_4:-59634037 None:intergenic
GTGAGTCAGCTCAGAAGTAT+TGG 0.488256 4_4:+59633367 Msa0691480:CDS
AACATAAACGGAAGCAATCA+GGG 0.488638 4_4:+59633569 Msa0691480:CDS
AGTGAATAAGTGGGGTGTGT+GGG 0.490848 4_4:+59637187 Msa0691480:three_prime_UTR
TGAATTGCTTTGTTTGACTC+AGG 0.494253 4_4:-59634766 None:intergenic
AATGTATATATTACCAGATA+CGG 0.501138 4_4:-59633700 None:intergenic
CAACCCAGTTGTATGCAATA+GGG 0.501421 4_4:-59636979 None:intergenic
TACTGAAAACTATGACATCA+AGG 0.503788 4_4:+59633135 Msa0691480:CDS
CGGTTGTTGTCCATGGTCAA+TGG 0.505798 4_4:-59631926 None:intergenic
GGTGAGGATGGTGGTTCGCC+AGG 0.507157 4_4:-59631954 None:intergenic
GCGTAGTTGTGGAGGATTGT+TGG 0.509249 4_4:-59632007 None:intergenic
ACTTACATCTTCGCAAGTAA+AGG 0.511759 4_4:-59634326 None:intergenic
TACAGAGCGGACTATTCAAC+CGG 0.511916 4_4:+59632155 Msa0691480:CDS
TGGACAACAACCGCATCACC+TGG 0.515189 4_4:+59631936 Msa0691480:CDS
GTCAAAACTGAAAACCGTAT+TGG 0.515495 4_4:+59634966 Msa0691480:CDS
GCGGAGGTGATTGGTGAGGA+TGG 0.515660 4_4:-59631966 None:intergenic
GACGTGCATTCAACATTTGA+GGG 0.516195 4_4:+59635008 Msa0691480:CDS
AGCTAAGGCAAGCGTAGTTG+TGG 0.516903 4_4:-59632018 None:intergenic
CTATGTCTGAGTTGGGCCAT+GGG 0.517623 4_4:+59633167 Msa0691480:CDS
TCGACCGCATGCACTTGCCT+TGG 0.518895 4_4:+59636922 Msa0691480:CDS
GAATTTAACAAATTCTCTCT+GGG 0.518948 4_4:-59633825 None:intergenic
GGTGGGGCTGTAAAGTTTCT+GGG 0.520924 4_4:+59633079 Msa0691480:CDS
TAGTGACAGTTTCAATTCCT+CGG 0.521777 4_4:-59633302 None:intergenic
ATACTCCTGCAATAAGCTGT+TGG 0.526263 4_4:+59637302 Msa0691480:three_prime_UTR
ACAAGAAGAGTTGAGGAAGT+TGG 0.529170 4_4:+59632315 Msa0691480:CDS
GGTGATGCGGTTGTTGTCCA+TGG 0.532757 4_4:-59631933 None:intergenic
TTGAGGTATTGGATGGGGTG+TGG 0.533847 4_4:+59637060 Msa0691480:three_prime_UTR
GTTCGGGAGGAGAGTAGCTA+AGG 0.534113 4_4:-59632033 None:intergenic
AGAGAATTTGTTAAATTCCG+TGG 0.536973 4_4:+59633830 Msa0691480:CDS
TGGTTAGTTAGAGATGGTTG+TGG 0.537709 4_4:-59631906 None:intergenic
TAGAGTCCTCACTAGAATGA+AGG 0.537714 4_4:-59636461 None:intergenic
CATGTGATTGAGGTATTGGA+TGG 0.541833 4_4:+59637053 Msa0691480:three_prime_UTR
ATTAATGGATTTCAGGGGTG+GGG 0.544312 4_4:+59633063 Msa0691480:intron
GTCTTCGTCCACACTAATCA+AGG 0.553624 4_4:-59636816 None:intergenic
AATGTGGATAATATTTGTTA+GGG 0.554004 4_4:+59637278 Msa0691480:three_prime_UTR
CAAGTATCCATATCGGAGAA+AGG 0.554145 4_4:-59636843 None:intergenic
ATGGGAAATGTTATCATGCA+AGG 0.554834 4_4:-59631805 None:intergenic
CCCCGAGAGCATAACTCAGT+TGG 0.555890 4_4:-59637252 None:intergenic
TATCAGCTTGCTGAGGACTT+GGG 0.556480 4_4:+59636555 Msa0691480:CDS
AAGTGAATAAGTGGGGTGTG+TGG 0.556926 4_4:+59637186 Msa0691480:three_prime_UTR
TGTGATTGAGGTATTGGATG+GGG 0.557856 4_4:+59637055 Msa0691480:three_prime_UTR
AAGATATGCATTGACAAGGC+GGG 0.561218 4_4:+59634232 Msa0691480:CDS
TGCCAACTGAGTTATGCTCT+CGG 0.562689 4_4:+59637250 Msa0691480:three_prime_UTR
GGTCAATGGTTAGTTAGAGA+TGG 0.563710 4_4:-59631912 None:intergenic
TAATCAAGCAGTAAAACCTC+AGG 0.564610 4_4:-59634278 None:intergenic
GCTGAGTCAGCTTTACCAGC+CGG 0.565138 4_4:+59636621 Msa0691480:CDS
CGTGAAGCATGTGGAGGACA+GGG 0.565627 4_4:+59634942 Msa0691480:CDS
GCACTCAAGTATTCACCACT+TGG 0.565645 4_4:-59633864 None:intergenic
CGGGTTTCTGCATGTGATTG+AGG 0.567793 4_4:+59637043 Msa0691480:three_prime_UTR
ATAGGTCTCGCTCTCTTAGG+TGG 0.569715 4_4:-59636378 None:intergenic
TAGCTCTCAGCCACTTGTCA+TGG 0.571188 4_4:-59633114 None:intergenic
GTTAACTGAGATGGGATGAC+AGG 0.572425 4_4:-59636225 None:intergenic
CAGAAAATGCTTCTGTAGTG+AGG 0.573670 4_4:+59636870 Msa0691480:CDS
GTGAATAAGTGGGGTGTGTG+GGG 0.574655 4_4:+59637188 Msa0691480:three_prime_UTR
AGTTGGCATGGATAATGCAT+TGG 0.574914 4_4:-59637235 None:intergenic
GTTATATGCCTTGATTAGTG+TGG 0.574945 4_4:+59636808 Msa0691480:CDS
CAACAATGTTCTGATGCAGC+AGG 0.578536 4_4:+59635034 Msa0691480:CDS
ACTTGGTGAAACGTCGGCCA+CGG 0.579741 4_4:-59633847 None:intergenic
GAGGAAGTTGGCTCTTCATG+AGG 0.581295 4_4:+59632327 Msa0691480:CDS
GTGCGGTTGGTGGGTCGTGG+CGG 0.581343 4_4:-59631985 None:intergenic
GTTTCAGAACATCAATCTCA+AGG 0.581478 4_4:+59636421 Msa0691480:CDS
TCCTGATTATAACCAGTCCA+TGG 0.582348 4_4:+59632207 Msa0691480:CDS
TTTACCTTCAATGAACCGGC+TGG 0.583384 4_4:-59636636 None:intergenic
TTGGTGTTCATATCTTCTTG+TGG 0.583806 4_4:+59632386 Msa0691480:CDS
GTTACACGACCAGAGGTCAA+AGG 0.585021 4_4:-59634038 None:intergenic
AGAGCATAACTCAGTTGGCA+TGG 0.586717 4_4:-59637247 None:intergenic
CAGTTCTGTTTACATCTCCA+AGG 0.586786 4_4:+59634070 Msa0691480:CDS
CAATGCATATCTTATAGCAA+TGG 0.589002 4_4:-59634222 None:intergenic
CAAGAGCTTTCGCATCTCAA+AGG 0.592095 4_4:-59632086 None:intergenic
TAGAACTTGTTAACTGAGAT+GGG 0.593873 4_4:-59636233 None:intergenic
TTCAACCGGCGGGAAGTCGA+CGG 0.594950 4_4:+59632169 Msa0691480:CDS
GAGATGCGAAAGCTCTTGGA+CGG 0.595446 4_4:+59632091 Msa0691480:CDS
ATTGGTATATGCAGGGGTCA+GGG 0.597775 4_4:-59637217 None:intergenic
ACAATCTGGAAGATCGCGAC+TGG 0.598438 4_4:+59632116 Msa0691480:CDS
GAGCGGACTATTCAACCGGC+GGG 0.599185 4_4:+59632159 Msa0691480:CDS
ATGTGATTGAGGTATTGGAT+GGG 0.599561 4_4:+59637054 Msa0691480:three_prime_UTR
ATAGACGTTGTTGATGACTT+GGG 0.603339 4_4:-59634301 None:intergenic
GTGGCCGACGTTTCACCAAG+TGG 0.604648 4_4:+59633849 Msa0691480:CDS
TGGTGGTTCGCCAGGTGATG+CGG 0.609405 4_4:-59631946 None:intergenic
TATTACACCAAATGGGCCTG+AGG 0.613456 4_4:+59634262 Msa0691480:CDS
CTCAACATTAATCCCTCATG+CGG 0.613828 4_4:+59637023 Msa0691480:exon
TCAACATTAATCCCTCATGC+GGG 0.614282 4_4:+59637024 Msa0691480:exon
CAGGAATGCCGTGAAGCATG+TGG 0.614384 4_4:+59634933 Msa0691480:intron
GAGCCCTATTGCATACAACT+GGG 0.618903 4_4:+59636976 Msa0691480:CDS
ATAATGCATTGGTATATGCA+GGG 0.619229 4_4:-59637224 None:intergenic
ACCAGTCCATGGAGCAACAG+AGG 0.619269 4_4:+59632218 Msa0691480:CDS
TGTGGCGGGACAGAAGGAGT+TGG 0.620098 4_4:+59631721 None:intergenic
GAGGTGATTGGTGAGGATGG+TGG 0.620258 4_4:-59631963 None:intergenic
GCCCAAATCAGGGATTCAGA+TGG 0.621638 4_4:+59633608 Msa0691480:CDS
TAAGGCAAGCGTAGTTGTGG+AGG 0.621691 4_4:-59632015 None:intergenic
CCGGCGGGAAGTCGACGGCA+GGG 0.623639 4_4:+59632174 Msa0691480:CDS
ATGGCCCACAAGAAGAGTTG+AGG 0.628054 4_4:+59632308 Msa0691480:CDS
CCCTGCCGTCGACTTCCCGC+CGG 0.629419 4_4:-59632174 None:intergenic
CCAGTCCATGGAGCAACAGA+GGG 0.631661 4_4:+59632219 Msa0691480:CDS
CTATAAGATATGCATTGACA+AGG 0.632074 4_4:+59634228 Msa0691480:CDS
TCAATCTCAAGGAAATAGCA+AGG 0.632456 4_4:+59636432 Msa0691480:CDS
TACTTCTGAGCTGACTCACA+CGG 0.633462 4_4:-59633363 None:intergenic
CACATGCAGAAACCCGCATG+AGG 0.634883 4_4:-59637036 None:intergenic
CCAACTGAGTTATGCTCTCG+GGG 0.635021 4_4:+59637252 Msa0691480:three_prime_UTR
ATTGCGTATTTGTTGGATCG+TGG 0.635615 4_4:+59632259 Msa0691480:CDS
CCAAGCGTCACCATGACAAG+TGG 0.636792 4_4:+59633104 Msa0691480:CDS
CTTCACATACATTACTCCCA+TGG 0.638446 4_4:-59633183 None:intergenic
GCTCAGAAGTATTGGATCGG+TGG 0.639509 4_4:+59633375 Msa0691480:CDS
CATTTCACTTCAGATAAGCA+AGG 0.640547 4_4:+59636119 Msa0691480:intron
AATACTGAAAACATTTATGG+AGG 0.640785 4_4:+59636599 Msa0691480:CDS
ACTGAAAACTATGACATCAA+GGG 0.641587 4_4:+59633136 Msa0691480:CDS
CTCTAACTAACCATTGACCA+TGG 0.642413 4_4:+59631916 Msa0691480:exon
ACGTGCATTCAACATTTGAG+GGG 0.643157 4_4:+59635009 Msa0691480:CDS
ACTCGTAAAAGAACAAATGA+CGG 0.644530 4_4:+59631754 Msa0691480:five_prime_UTR
CGTGGCGGAGGTGATTGGTG+AGG 0.646371 4_4:-59631970 None:intergenic
TAATGCATTGGTATATGCAG+GGG 0.646905 4_4:-59637223 None:intergenic
CTAACAAATATTATCCACAT+TGG 0.648111 4_4:-59637276 None:intergenic
TTTGATTCGGAGAGTTCGGG+AGG 0.650263 4_4:-59632046 None:intergenic
CGTGCATTCAACATTTGAGG+GGG 0.650995 4_4:+59635010 Msa0691480:CDS
TCAGCTCAGAAGTATTGGAT+CGG 0.652959 4_4:+59633372 Msa0691480:CDS
GACATGCTATGTATTCTGCA+AGG 0.654350 4_4:-59636146 None:intergenic
CCAGAGTTATCAGCTTGCTG+AGG 0.658447 4_4:+59636548 Msa0691480:intron
ACATGCAGAAACCCGCATGA+GGG 0.659651 4_4:-59637035 None:intergenic
GGAGATGTAAACAGAACTGA+CGG 0.662441 4_4:-59634066 None:intergenic
ACATAAACGGAAGCAATCAG+GGG 0.662941 4_4:+59633570 Msa0691480:CDS
AATATCCGAATAGCTGAATG+TGG 0.664029 4_4:+59633644 Msa0691480:CDS
TTAACCAAGGCAAGTGCATG+CGG 0.664341 4_4:-59636926 None:intergenic
TATGCTCTCGGGGACCAATG+TGG 0.665706 4_4:+59637262 Msa0691480:three_prime_UTR
TAAGATATGCATTGACAAGG+CGG 0.666215 4_4:+59634231 Msa0691480:CDS
CTTGGATTAGAACATATGAA+CGG 0.667047 4_4:+59636195 Msa0691480:CDS
AAACGCATCAGGAATACCAA+AGG 0.669563 4_4:-59636951 None:intergenic
GAATGCCGTGAAGCATGTGG+AGG 0.676248 4_4:+59634936 Msa0691480:CDS
GGCAATAGTTACACGACCAG+AGG 0.678714 4_4:-59634045 None:intergenic
GTTGTGGAGGATTGTTGGTG+CGG 0.678862 4_4:-59632002 None:intergenic
TTCACCACTTGGTGAAACGT+CGG 0.679084 4_4:-59633853 None:intergenic
AGAGCGGACTATTCAACCGG+CGG 0.689517 4_4:+59632158 Msa0691480:CDS
AATACCAAAGGAGTTAACCA+AGG 0.712604 4_4:-59636939 None:intergenic
TACACGACCAGAGGTCAAAG+GGG 0.719846 4_4:-59634036 None:intergenic
CATAAACGGAAGCAATCAGG+GGG 0.721408 4_4:+59633571 Msa0691480:CDS
TTCGGGTTGATGATACAGAG+CGG 0.759200 4_4:+59632142 Msa0691480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTAATAGTGAAATT+TGG - chr4_4:59631840-59631859 None:intergenic 10.0%
!! ATCATCATAATATAAAAATA+AGG - chr4_4:59632428-59632447 None:intergenic 10.0%
!!! TTTAATTTAAGCATAAAAAT+TGG - chr4_4:59632672-59632691 None:intergenic 10.0%
!!! AAATTAAACTTTAATTTACA+AGG + chr4_4:59632684-59632703 Msa0691480:intron 10.0%
!! AAATAAATTCATTTATTATC+AGG - chr4_4:59633744-59633763 None:intergenic 10.0%
!! AATTAAAAAAGATATAAAAC+AGG - chr4_4:59635731-59635750 None:intergenic 10.0%
!!! TTGTTCATTTTTTTATATCT+AGG + chr4_4:59632919-59632938 Msa0691480:intron 15.0%
!! ATATAACAAGAAAAAAATGA+TGG + chr4_4:59632951-59632970 Msa0691480:intron 15.0%
!! AAAAAAGTTTATTTGACAAA+TGG + chr4_4:59633017-59633036 Msa0691480:intron 15.0%
!! TAGAAATATTATTAAAGTGA+CGG - chr4_4:59633265-59633284 None:intergenic 15.0%
!!! ATTTTTTAATTTATGTTCAG+AGG + chr4_4:59634472-59634491 Msa0691480:intron 15.0%
!! AAAATAGAGAAATAATCATA+TGG + chr4_4:59635366-59635385 Msa0691480:intron 15.0%
!! AAATAGAGAAATAATCATAT+GGG + chr4_4:59635367-59635386 Msa0691480:intron 15.0%
!! TTTAATTATACCTTTAATCA+TGG + chr4_4:59635744-59635763 Msa0691480:intron 15.0%
!!! AGTTTCTTCTATATTTTCTT+AGG - chr4_4:59632507-59632526 None:intergenic 20.0%
!! AGATTTAGAGATTAATGAAT+TGG + chr4_4:59632535-59632554 Msa0691480:intron 20.0%
!! TTGTATCATAAACCATATTT+CGG - chr4_4:59632562-59632581 None:intergenic 20.0%
!!! TAAACTTTAATTTACAAGGT+AGG + chr4_4:59632688-59632707 Msa0691480:intron 20.0%
!!! TTTTAAGTTTGACACATAAT+TGG + chr4_4:59632767-59632786 Msa0691480:intron 20.0%
!! AAGAAACATTTCATTTAACA+AGG - chr4_4:59632793-59632812 None:intergenic 20.0%
!! ATGAAATCACATCAAATTAT+AGG - chr4_4:59632835-59632854 None:intergenic 20.0%
!!! TTCATTTTTTTATATCTAGG+TGG + chr4_4:59632922-59632941 Msa0691480:intron 20.0%
!!! TTGTCAAATAAACTTTTTTG+AGG - chr4_4:59633016-59633035 None:intergenic 20.0%
!! TGGTTTCTTTATATGATTAA+TGG + chr4_4:59633048-59633067 Msa0691480:intron 20.0%
!!! TTATATGATTAATGGATTTC+AGG + chr4_4:59633056-59633075 Msa0691480:intron 20.0%
!!! TATATGATTAATGGATTTCA+GGG + chr4_4:59633057-59633076 Msa0691480:intron 20.0%
!! AAATCATAATAAACTACATG+TGG - chr4_4:59633237-59633256 None:intergenic 20.0%
!! AGAAATATTATTAAAGTGAC+GGG - chr4_4:59633264-59633283 None:intergenic 20.0%
!! TATATGTAGTTAGATTGTTT+GGG + chr4_4:59633445-59633464 Msa0691480:intron 20.0%
!! AATGTATATATTACCAGATA+CGG - chr4_4:59633703-59633722 None:intergenic 20.0%
!! TAATGTAAGATGTTAAAGTT+TGG - chr4_4:59634166-59634185 None:intergenic 20.0%
!! GATATAAAATGCATGTATTA+GGG - chr4_4:59634353-59634372 None:intergenic 20.0%
!! ATCATCAGAAGATATAATAA+TGG + chr4_4:59634653-59634672 Msa0691480:intron 20.0%
!!! AATTGCATTTTACATTTTAC+TGG + chr4_4:59635338-59635357 Msa0691480:intron 20.0%
!! AATAAACAATAAGAGTGATA+TGG - chr4_4:59635564-59635583 None:intergenic 20.0%
!!! TTTTGTTTGTTGTTAAATAG+TGG + chr4_4:59635902-59635921 Msa0691480:intron 20.0%
!! TACAAAATATTGTGAAATAG+CGG + chr4_4:59635990-59636009 Msa0691480:intron 20.0%
!! ACAAAAAACAAACCATTTAA+AGG + chr4_4:59636171-59636190 Msa0691480:CDS 20.0%
!! GTAAATCATATTATTGCTTA+TGG + chr4_4:59636654-59636673 Msa0691480:intron 20.0%
!! TATTATTCACATTTCCTTAT+TGG - chr4_4:59637123-59637142 None:intergenic 20.0%
!!! ACTTTTTAAAGTGAATAAGT+GGG + chr4_4:59637178-59637197 Msa0691480:three_prime_UTR 20.0%
!!! AATGTGGATAATATTTGTTA+GGG + chr4_4:59637278-59637297 Msa0691480:three_prime_UTR 20.0%
!!! TAATAGTGAAATTTGGTGTT+GGG - chr4_4:59631833-59631852 None:intergenic 25.0%
!!! TTAATAGTGAAATTTGGTGT+TGG - chr4_4:59631834-59631853 None:intergenic 25.0%
!! GTCTCTCTCTTTTATATTAT+CGG - chr4_4:59632485-59632504 None:intergenic 25.0%
! TGGTTTATGATACAACATTA+TGG + chr4_4:59632567-59632586 Msa0691480:intron 25.0%
! TTTAAGCATAAAAATTGGCA+TGG - chr4_4:59632667-59632686 None:intergenic 25.0%
! GGTAAATAAATTATCTAAGG+TGG - chr4_4:59632991-59633010 None:intergenic 25.0%
!!! TCAAATAAACTTTTTTGAGG+CGG - chr4_4:59633013-59633032 None:intergenic 25.0%
!!! ATATGATTAATGGATTTCAG+GGG + chr4_4:59633058-59633077 Msa0691480:intron 25.0%
!! ACTACATATAGGCTTTTAAA+TGG - chr4_4:59633435-59633454 None:intergenic 25.0%
! CAAACAATCTAACTACATAT+AGG - chr4_4:59633446-59633465 None:intergenic 25.0%
! CTATATGTAGTTAGATTGTT+TGG + chr4_4:59633444-59633463 Msa0691480:intron 25.0%
! GAATTTAACAAATTCTCTCT+GGG - chr4_4:59633828-59633847 None:intergenic 25.0%
! TGCAATAAAAAATACAGATC+AGG + chr4_4:59633884-59633903 Msa0691480:CDS 25.0%
! ATGTAAGCAAACTTTGTAAT+TGG - chr4_4:59633968-59633987 None:intergenic 25.0%
! AATGATTCCATCTTTATATG+TGG + chr4_4:59634094-59634113 Msa0691480:intron 25.0%
! TTCATATCCACATATAAAGA+TGG - chr4_4:59634104-59634123 None:intergenic 25.0%
! ATCTAACAACAGAAAATGAA+AGG - chr4_4:59634194-59634213 None:intergenic 25.0%
! GGATATAAAATGCATGTATT+AGG - chr4_4:59634354-59634373 None:intergenic 25.0%
! ACCTCATAATAACATTATGA+GGG - chr4_4:59634451-59634470 None:intergenic 25.0%
! AACCTCATAATAACATTATG+AGG - chr4_4:59634452-59634471 None:intergenic 25.0%
!! TGTGATAGATTGTAATTTGT+AGG + chr4_4:59634874-59634893 Msa0691480:intron 25.0%
!!! AAACCAGTTTTGAATTGAAA+GGG - chr4_4:59635238-59635257 None:intergenic 25.0%
!!! AAAACCAGTTTTGAATTGAA+AGG - chr4_4:59635239-59635258 None:intergenic 25.0%
!! ACTTAACAGTGTTAACTTTT+TGG + chr4_4:59635479-59635498 Msa0691480:intron 25.0%
! TTCTAATCACTTGAACAAAA+AGG - chr4_4:59635534-59635553 None:intergenic 25.0%
! AAGTCAAATAGTAATAGACT+GGG - chr4_4:59635705-59635724 None:intergenic 25.0%
! ATTGTTCAATACTACTTCAT+GGG - chr4_4:59635851-59635870 None:intergenic 25.0%
! AATTGTTCAATACTACTTCA+TGG - chr4_4:59635852-59635871 None:intergenic 25.0%
! TAACAACAAACAAAAATGAG+TGG - chr4_4:59635897-59635916 None:intergenic 25.0%
!!! TATGGATGGATTGAATTTAT+GGG + chr4_4:59636091-59636110 Msa0691480:intron 25.0%
! AGCAATACTGAAAACATTTA+TGG + chr4_4:59636596-59636615 Msa0691480:CDS 25.0%
! AATACTGAAAACATTTATGG+AGG + chr4_4:59636599-59636618 Msa0691480:CDS 25.0%
!! GTGAATTTTACATACCAATA+AGG + chr4_4:59637106-59637125 Msa0691480:three_prime_UTR 25.0%
! AAAAGTGAATTCTAGTCATT+AGG - chr4_4:59637164-59637183 None:intergenic 25.0%
!!! CACTTTTTAAAGTGAATAAG+TGG + chr4_4:59637177-59637196 Msa0691480:three_prime_UTR 25.0%
!!! CTTTTTAAAGTGAATAAGTG+GGG + chr4_4:59637179-59637198 Msa0691480:three_prime_UTR 25.0%
! CTAACAAATATTATCCACAT+TGG - chr4_4:59637279-59637298 None:intergenic 25.0%
! CAATGTGGATAATATTTGTT+AGG + chr4_4:59637277-59637296 Msa0691480:three_prime_UTR 25.0%
ACTCGTAAAAGAACAAATGA+CGG + chr4_4:59631754-59631773 Msa0691480:five_prime_UTR 30.0%
GAATGTTGTTGGATTTGATT+CGG - chr4_4:59632062-59632081 None:intergenic 30.0%
AAAAATAAGGTAGAGAGAGA+GGG - chr4_4:59632415-59632434 None:intergenic 30.0%
TAAAAATAAGGTAGAGAGAG+AGG - chr4_4:59632416-59632435 None:intergenic 30.0%
TAATGAATTGGACCGAAATA+TGG + chr4_4:59632547-59632566 Msa0691480:intron 30.0%
! ACTTTAATTTACAAGGTAGG+TGG + chr4_4:59632691-59632710 Msa0691480:intron 30.0%
ATTTAAAGGCTTGAGCTTTA+GGG - chr4_4:59632730-59632749 None:intergenic 30.0%
ATTCATAGCCCTTCATTTAA+AGG - chr4_4:59632744-59632763 None:intergenic 30.0%
TCACATCAAATTATAGGTCT+AGG - chr4_4:59632829-59632848 None:intergenic 30.0%
! TTTTTATATCTAGGTGGTTG+TGG + chr4_4:59632928-59632947 Msa0691480:intron 30.0%
GCGGGTAAATAAATTATCTA+AGG - chr4_4:59632994-59633013 None:intergenic 30.0%
!!! CAAATAAACTTTTTTGAGGC+GGG - chr4_4:59633012-59633031 None:intergenic 30.0%
TACTGAAAACTATGACATCA+AGG + chr4_4:59633135-59633154 Msa0691480:CDS 30.0%
ACTGAAAACTATGACATCAA+GGG + chr4_4:59633136-59633155 Msa0691480:CDS 30.0%
!!! ATTTCTAGAGTGATTTTCAC+AGG + chr4_4:59633278-59633297 Msa0691480:intron 30.0%
ACTACTTATGATCCAAATTC+TGG + chr4_4:59633321-59633340 Msa0691480:CDS 30.0%
! TTTTCACAGCTCAACATAAA+CGG + chr4_4:59633557-59633576 Msa0691480:CDS 30.0%
ATTCAGCTATTCGGATATTT+GGG - chr4_4:59633643-59633662 None:intergenic 30.0%
! GGTCACAAAATTGGTTTAAA+TGG + chr4_4:59633665-59633684 Msa0691480:CDS 30.0%
!! GGTTTAAATGGAGTTGATAA+TGG + chr4_4:59633677-59633696 Msa0691480:CDS 30.0%
AAATGAGTAAACTCAAGTTC+TGG + chr4_4:59633765-59633784 Msa0691480:intron 30.0%
GGAATTTAACAAATTCTCTC+TGG - chr4_4:59633829-59633848 None:intergenic 30.0%
!! AGAGAATTTGTTAAATTCCG+TGG + chr4_4:59633830-59633849 Msa0691480:CDS 30.0%
TAAAGATGGAATCATTACCT+TGG - chr4_4:59634090-59634109 None:intergenic 30.0%
CAATGCATATCTTATAGCAA+TGG - chr4_4:59634225-59634244 None:intergenic 30.0%
! CTATAAGATATGCATTGACA+AGG + chr4_4:59634228-59634247 Msa0691480:CDS 30.0%
! CCTTTTCTATTACACCAAAT+GGG + chr4_4:59634255-59634274 Msa0691480:CDS 30.0%
!!! TTTTATATCCATTTGCTGTG+AGG + chr4_4:59634364-59634383 Msa0691480:intron 30.0%
CAATGTGATTCAAATCCTTT+AGG + chr4_4:59634390-59634409 Msa0691480:intron 30.0%
TCCCTCATAATGTTATTATG+AGG + chr4_4:59634447-59634466 Msa0691480:intron 30.0%
TTATATCAAATGCTTTCGTC+TGG - chr4_4:59634524-59634543 None:intergenic 30.0%
TATCTTCTGATGATCAAACT+AGG - chr4_4:59634647-59634666 None:intergenic 30.0%
GTAAGGAGATTAACATAAAC+AGG - chr4_4:59634680-59634699 None:intergenic 30.0%
!! TATTGTTTCTAGTGCATACA+AGG + chr4_4:59634789-59634808 Msa0691480:CDS 30.0%
TGGATTGCTATCATTATACT+TGG + chr4_4:59634850-59634869 Msa0691480:intron 30.0%
GGATTGCTATCATTATACTT+GGG + chr4_4:59634851-59634870 Msa0691480:intron 30.0%
! AAACCGTATTGGTCAATTTA+AGG + chr4_4:59634977-59634996 Msa0691480:CDS 30.0%
! AACCGTATTGGTCAATTTAA+GGG + chr4_4:59634978-59634997 Msa0691480:CDS 30.0%
AGTGAAGAATCATTCTTTGT+AGG + chr4_4:59635158-59635177 Msa0691480:intron 30.0%
TTTCATATTCAAACAGTGCA+CGG - chr4_4:59635212-59635231 None:intergenic 30.0%
!!! AACCAGTTTTGAATTGAAAG+GGG - chr4_4:59635237-59635256 None:intergenic 30.0%
! TGCATTTTACATTTTACTGG+TGG + chr4_4:59635341-59635360 Msa0691480:intron 30.0%
! TTGGAGATAAAACCTACTTT+TGG + chr4_4:59635451-59635470 Msa0691480:intron 30.0%
AAGTTAACACTGTTAAGTGA+AGG - chr4_4:59635477-59635496 None:intergenic 30.0%
! GTGTTAACTTTTTGGATGAT+TGG + chr4_4:59635487-59635506 Msa0691480:intron 30.0%
AGATTTCAGCTAAAACATAC+TGG + chr4_4:59635589-59635608 Msa0691480:intron 30.0%
CAAGTCAAATAGTAATAGAC+TGG - chr4_4:59635706-59635725 None:intergenic 30.0%
TTGTTCAATACTACTTCATG+GGG - chr4_4:59635850-59635869 None:intergenic 30.0%
AATAGCGAATCACATAACAA+TGG - chr4_4:59635968-59635987 None:intergenic 30.0%
!! CTATGGATGGATTGAATTTA+TGG + chr4_4:59636090-59636109 Msa0691480:intron 30.0%
AACAAACCATTTAAAGGTCT+TGG + chr4_4:59636177-59636196 Msa0691480:CDS 30.0%
TCTAATCCAAGACCTTTAAA+TGG - chr4_4:59636186-59636205 None:intergenic 30.0%
! CTTGGATTAGAACATATGAA+CGG + chr4_4:59636195-59636214 Msa0691480:CDS 30.0%
!! TAGAACTTGTTAACTGAGAT+GGG - chr4_4:59636236-59636255 None:intergenic 30.0%
AGGTCATTACAAATATCAAC+AGG - chr4_4:59636302-59636321 None:intergenic 30.0%
TGTTGATATTTGTAATGACC+TGG + chr4_4:59636301-59636320 Msa0691480:intron 30.0%
CTATAGCAAAACGTTTCAAT+AGG - chr4_4:59636399-59636418 None:intergenic 30.0%
!! ATTGAAACGTTTTGCTATAG+AGG + chr4_4:59636399-59636418 Msa0691480:CDS 30.0%
ATGATTTACCTTCAATGAAC+CGG - chr4_4:59636643-59636662 None:intergenic 30.0%
! ATAATGCATTGGTATATGCA+GGG - chr4_4:59637227-59637246 None:intergenic 30.0%
! GATCTGATGAATACTTTTAC+TGG + chr4_4:59637331-59637350 Msa0691480:three_prime_UTR 30.0%
ATGGGAAATGTTATCATGCA+AGG - chr4_4:59631808-59631827 None:intergenic 35.0%
!! GAAATTTGGTGTTGGGAAAT+GGG - chr4_4:59631826-59631845 None:intergenic 35.0%
!! TGAAATTTGGTGTTGGGAAA+TGG - chr4_4:59631827-59631846 None:intergenic 35.0%
!!! ATAGCGTGTGTTTTGGAATT+TGG - chr4_4:59631875-59631894 None:intergenic 35.0%
CAAATACGCAATTCGTTTCA+TGG - chr4_4:59632251-59632270 None:intergenic 35.0%
GAAACGAATTGCGTATTTGT+TGG + chr4_4:59632252-59632271 Msa0691480:CDS 35.0%
! TTGGTGTTCATATCTTCTTG+TGG + chr4_4:59632386-59632405 Msa0691480:CDS 35.0%
AAAATAAGGTAGAGAGAGAG+GGG - chr4_4:59632414-59632433 None:intergenic 35.0%
!! TATTATCGGTGTCAATGTGT+CGG - chr4_4:59632471-59632490 None:intergenic 35.0%
CATTTAAAGGCTTGAGCTTT+AGG - chr4_4:59632731-59632750 None:intergenic 35.0%
AAGCTCAAGCCTTTAAATGA+AGG + chr4_4:59632732-59632751 Msa0691480:intron 35.0%
AGCTCAAGCCTTTAAATGAA+GGG + chr4_4:59632733-59632752 Msa0691480:intron 35.0%
!! TTGTTTTGCTATGTCTGAGT+TGG + chr4_4:59633159-59633178 Msa0691480:CDS 35.0%
!! TGTTTTGCTATGTCTGAGTT+GGG + chr4_4:59633160-59633179 Msa0691480:CDS 35.0%
CTCAATAGGATGTGATTGTT+AGG + chr4_4:59633210-59633229 Msa0691480:intron 35.0%
TAGTGACAGTTTCAATTCCT+CGG - chr4_4:59633305-59633324 None:intergenic 35.0%
ATGACAAACTCACCAGAATT+TGG - chr4_4:59633336-59633355 None:intergenic 35.0%
AACATAAACGGAAGCAATCA+GGG + chr4_4:59633569-59633588 Msa0691480:CDS 35.0%
! ATGCTTTTATTGCCCAAATC+AGG + chr4_4:59633597-59633616 Msa0691480:CDS 35.0%
! TGCTTTTATTGCCCAAATCA+GGG + chr4_4:59633598-59633617 Msa0691480:CDS 35.0%
CATTCAGCTATTCGGATATT+TGG - chr4_4:59633644-59633663 None:intergenic 35.0%
AATATCCGAATAGCTGAATG+TGG + chr4_4:59633644-59633663 Msa0691480:CDS 35.0%
!!! TGATTGCTTTTTCTGAGAGT+TGG + chr4_4:59633907-59633926 Msa0691480:intron 35.0%
! TAAGATATGCATTGACAAGG+CGG + chr4_4:59634231-59634250 Msa0691480:CDS 35.0%
! GCCTTTTCTATTACACCAAA+TGG + chr4_4:59634254-59634273 Msa0691480:CDS 35.0%
!! CCCATTTGGTGTAATAGAAA+AGG - chr4_4:59634258-59634277 None:intergenic 35.0%
TAATCAAGCAGTAAAACCTC+AGG - chr4_4:59634281-59634300 None:intergenic 35.0%
!! ATAGACGTTGTTGATGACTT+GGG - chr4_4:59634304-59634323 None:intergenic 35.0%
!! AATAGACGTTGTTGATGACT+TGG - chr4_4:59634305-59634324 None:intergenic 35.0%
ACTTACATCTTCGCAAGTAA+AGG - chr4_4:59634329-59634348 None:intergenic 35.0%
! TCCTTTAGGAACCAAAACTT+AGG + chr4_4:59634404-59634423 Msa0691480:intron 35.0%
!!! ACCTAAGTTTTGGTTCCTAA+AGG - chr4_4:59634408-59634427 None:intergenic 35.0%
! AAAGTGGCATACCTAAGTTT+TGG - chr4_4:59634418-59634437 None:intergenic 35.0%
TGAGGGACATATACTAAAAG+TGG - chr4_4:59634434-59634453 None:intergenic 35.0%
AAATGCTTTCGTCTGGAAAT+TGG - chr4_4:59634517-59634536 None:intergenic 35.0%
!! TGAATTGCTTTGTTTGACTC+AGG - chr4_4:59634769-59634788 None:intergenic 35.0%
!!! CATACAAGGCTACTTTTACA+TGG + chr4_4:59634803-59634822 Msa0691480:CDS 35.0%
GAATAATATGCGTACTCTTC+AGG + chr4_4:59634825-59634844 Msa0691480:CDS 35.0%
! GATTGTAATTTGTAGGCTAC+TGG + chr4_4:59634881-59634900 Msa0691480:intron 35.0%
GTTGTACTAATGCATGAATC+AGG + chr4_4:59634914-59634933 Msa0691480:intron 35.0%
GTCAAAACTGAAAACCGTAT+TGG + chr4_4:59634966-59634985 Msa0691480:CDS 35.0%
CACCCTTAAATTGACCAATA+CGG - chr4_4:59634983-59635002 None:intergenic 35.0%
AACAATGTATGAAGTGTAGC+AGG + chr4_4:59635090-59635109 Msa0691480:intron 35.0%
GAAGAATCATTCTTTGTAGG+AGG + chr4_4:59635161-59635180 Msa0691480:intron 35.0%
! TAAAAACAGATCTAGAGCCT+AGG - chr4_4:59635187-59635206 None:intergenic 35.0%
TTCCCCTTTCAATTCAAAAC+TGG + chr4_4:59635232-59635251 Msa0691480:intron 35.0%
ATTCAACTCTTGAGAGTAAC+TGG + chr4_4:59635390-59635409 Msa0691480:intron 35.0%
TTCAACTCTTGAGAGTAACT+GGG + chr4_4:59635391-59635410 Msa0691480:intron 35.0%
TTCAGCTAAAACATACTGGT+AGG + chr4_4:59635593-59635612 Msa0691480:intron 35.0%
TCTCATGTGAAATTCCTTTC+GGG - chr4_4:59635641-59635660 None:intergenic 35.0%
CTCTCATGTGAAATTCCTTT+CGG - chr4_4:59635642-59635661 None:intergenic 35.0%
AAGGAATTTCACATGAGAGA+TGG + chr4_4:59635643-59635662 Msa0691480:intron 35.0%
AAATGGGAAATTGTCATCTC+TGG - chr4_4:59635774-59635793 None:intergenic 35.0%
TTTCCCATTTATGATATCCG+TGG + chr4_4:59635784-59635803 Msa0691480:intron 35.0%
AGTCCACGGATATCATAAAT+GGG - chr4_4:59635790-59635809 None:intergenic 35.0%
AAGTCCACGGATATCATAAA+TGG - chr4_4:59635791-59635810 None:intergenic 35.0%
ATCCATAGTGTTGTCAATTG+CGG - chr4_4:59636078-59636097 None:intergenic 35.0%
CATTTCACTTCAGATAAGCA+AGG + chr4_4:59636119-59636138 Msa0691480:intron 35.0%
!! GTAGAACTTGTTAACTGAGA+TGG - chr4_4:59636237-59636256 None:intergenic 35.0%
GATATTTGTAATGACCTGGT+TGG + chr4_4:59636305-59636324 Msa0691480:intron 35.0%
GATCAATCTGTGTAAATGAG+AGG - chr4_4:59636354-59636373 None:intergenic 35.0%
GTTTCAGAACATCAATCTCA+AGG + chr4_4:59636421-59636440 Msa0691480:CDS 35.0%
TCAATCTCAAGGAAATAGCA+AGG + chr4_4:59636432-59636451 Msa0691480:CDS 35.0%
GTTATATGCCTTGATTAGTG+TGG + chr4_4:59636808-59636827 Msa0691480:CDS 35.0%
CTGTTGACAAGTATCCATAT+CGG - chr4_4:59636853-59636872 None:intergenic 35.0%
AATACCAAAGGAGTTAACCA+AGG - chr4_4:59636942-59636961 None:intergenic 35.0%
!! ATGTGATTGAGGTATTGGAT+GGG + chr4_4:59637054-59637073 Msa0691480:three_prime_UTR 35.0%
! TAATGCATTGGTATATGCAG+GGG - chr4_4:59637226-59637245 None:intergenic 35.0%
! GATAATGCATTGGTATATGC+AGG - chr4_4:59637228-59637247 None:intergenic 35.0%
! GATGAAGATAGCGTGTGTTT+TGG - chr4_4:59631882-59631901 None:intergenic 40.0%
! TGGTTAGTTAGAGATGGTTG+TGG - chr4_4:59631909-59631928 None:intergenic 40.0%
! GGTCAATGGTTAGTTAGAGA+TGG - chr4_4:59631915-59631934 None:intergenic 40.0%
CTCTAACTAACCATTGACCA+TGG + chr4_4:59631916-59631935 Msa0691480:exon 40.0%
!! TGGATTTGATTCGGAGAGTT+CGG - chr4_4:59632053-59632072 None:intergenic 40.0%
!! TCAAAGGTGTCGAATGTTGT+TGG - chr4_4:59632073-59632092 None:intergenic 40.0%
TCCTGATTATAACCAGTCCA+TGG + chr4_4:59632207-59632226 Msa0691480:CDS 40.0%
!! TCCATGGACTGGTTATAATC+AGG - chr4_4:59632211-59632230 None:intergenic 40.0%
! ATTGCGTATTTGTTGGATCG+TGG + chr4_4:59632259-59632278 Msa0691480:CDS 40.0%
ACTTCCTCAACTCTTCTTGT+GGG - chr4_4:59632315-59632334 None:intergenic 40.0%
AACTTCCTCAACTCTTCTTG+TGG - chr4_4:59632316-59632335 None:intergenic 40.0%
ACAAGAAGAGTTGAGGAAGT+TGG + chr4_4:59632315-59632334 Msa0691480:CDS 40.0%
! TTGGCTCTTCATGAGGTTAT+TGG + chr4_4:59632334-59632353 Msa0691480:CDS 40.0%
!! CATTCTCTTGCTGTTAAGCT+TGG + chr4_4:59632367-59632386 Msa0691480:CDS 40.0%
!! ATTATCGGTGTCAATGTGTC+GGG - chr4_4:59632470-59632489 None:intergenic 40.0%
AAAAATTGGCATGGCAGCTT+TGG - chr4_4:59632658-59632677 None:intergenic 40.0%
!! TGATTAATGGATTTCAGGGG+TGG + chr4_4:59633061-59633080 Msa0691480:intron 40.0%
!! GATTAATGGATTTCAGGGGT+GGG + chr4_4:59633062-59633081 Msa0691480:intron 40.0%
!! ATTAATGGATTTCAGGGGTG+GGG + chr4_4:59633063-59633082 Msa0691480:intron 40.0%
CTTCACATACATTACTCCCA+TGG - chr4_4:59633186-59633205 None:intergenic 40.0%
CATGGGAGTAATGTATGTGA+AGG + chr4_4:59633184-59633203 Msa0691480:intron 40.0%
!! TCAGCTCAGAAGTATTGGAT+CGG + chr4_4:59633372-59633391 Msa0691480:CDS 40.0%
CAACATAAACGGAAGCAATC+AGG + chr4_4:59633568-59633587 Msa0691480:CDS 40.0%
ACATAAACGGAAGCAATCAG+GGG + chr4_4:59633570-59633589 Msa0691480:CDS 40.0%
TCCATCTGAATCCCTGATTT+GGG - chr4_4:59633612-59633631 None:intergenic 40.0%
TTCCATCTGAATCCCTGATT+TGG - chr4_4:59633613-59633632 None:intergenic 40.0%
TGTGACCACATTCAGCTATT+CGG - chr4_4:59633652-59633671 None:intergenic 40.0%
GCTGAATGTGGTCACAAAAT+TGG + chr4_4:59633656-59633675 Msa0691480:CDS 40.0%
GGAGATGTAAACAGAACTGA+CGG - chr4_4:59634069-59634088 None:intergenic 40.0%
CAGTTCTGTTTACATCTCCA+AGG + chr4_4:59634070-59634089 Msa0691480:CDS 40.0%
! AAGATATGCATTGACAAGGC+GGG + chr4_4:59634232-59634251 Msa0691480:CDS 40.0%
CATTGAATCCTCACAGCAAA+TGG - chr4_4:59634375-59634394 None:intergenic 40.0%
AACAACATATATGAGCCGCA+GGG - chr4_4:59634580-59634599 None:intergenic 40.0%
TAACAACATATATGAGCCGC+AGG - chr4_4:59634581-59634600 None:intergenic 40.0%
TGCGGCTCATATATGTTGTT+AGG + chr4_4:59634580-59634599 Msa0691480:intron 40.0%
GCATATCTGTAGAAGACGTA+AGG - chr4_4:59634697-59634716 None:intergenic 40.0%
ATATGCGTACTCTTCAGGTA+TGG + chr4_4:59634830-59634849 Msa0691480:intron 40.0%
GCATTAGTACAACCTTAGTG+AGG - chr4_4:59634907-59634926 None:intergenic 40.0%
TGACGTGCATTCAACATTTG+AGG + chr4_4:59635007-59635026 Msa0691480:CDS 40.0%
GACGTGCATTCAACATTTGA+GGG + chr4_4:59635008-59635027 Msa0691480:CDS 40.0%
ACGTGCATTCAACATTTGAG+GGG + chr4_4:59635009-59635028 Msa0691480:CDS 40.0%
AGTAGGAGTTATGTGTGAAG+TGG + chr4_4:59635122-59635141 Msa0691480:intron 40.0%
TTTCTGCCAAATTCAAGCCT+AGG + chr4_4:59635256-59635275 Msa0691480:intron 40.0%
ATGTCTCCTAGGCTTGAATT+TGG - chr4_4:59635265-59635284 None:intergenic 40.0%
AGACACATCATATGTCTCCT+AGG - chr4_4:59635276-59635295 None:intergenic 40.0%
TCAACTCTTGAGAGTAACTG+GGG + chr4_4:59635392-59635411 Msa0691480:intron 40.0%
! GCTACTTCGTTTGAGTTTGT+TGG + chr4_4:59635432-59635451 Msa0691480:intron 40.0%
GTTAAGTGAAGGCCAAAAGT+AGG - chr4_4:59635466-59635485 None:intergenic 40.0%
GACTAAGCATGACAAAGCAT+AGG - chr4_4:59635619-59635638 None:intergenic 40.0%
! CTCTGGAGAACCATGATTAA+AGG - chr4_4:59635757-59635776 None:intergenic 40.0%
AAGTCAATCGACAAAGTCCA+CGG - chr4_4:59635804-59635823 None:intergenic 40.0%
TTGCGGATCGCATAAAATAG+CGG - chr4_4:59636061-59636080 None:intergenic 40.0%
ATCCGCAATTGACAACACTA+TGG + chr4_4:59636073-59636092 Msa0691480:intron 40.0%
GCAATTGACAACACTATGGA+TGG + chr4_4:59636077-59636096 Msa0691480:intron 40.0%
GACATGCTATGTATTCTGCA+AGG - chr4_4:59636149-59636168 None:intergenic 40.0%
CTGAAATTCACTGCTCTTGA+TGG - chr4_4:59636259-59636278 None:intergenic 40.0%
CATCAAGAGCAGTGAATTTC+AGG + chr4_4:59636257-59636276 Msa0691480:CDS 40.0%
TAGAGTCCTCACTAGAATGA+AGG - chr4_4:59636464-59636483 None:intergenic 40.0%
CAAGTATCCATATCGGAGAA+AGG - chr4_4:59636846-59636865 None:intergenic 40.0%
CAGAAAATGCTTCTGTAGTG+AGG + chr4_4:59636870-59636889 Msa0691480:CDS 40.0%
AAACGCATCAGGAATACCAA+AGG - chr4_4:59636954-59636973 None:intergenic 40.0%
CAACCCAGTTGTATGCAATA+GGG - chr4_4:59636982-59637001 None:intergenic 40.0%
TCAACCCAGTTGTATGCAAT+AGG - chr4_4:59636983-59637002 None:intergenic 40.0%
! ACTGGGTTGAGTCAAATTCT+TGG + chr4_4:59636993-59637012 Msa0691480:CDS 40.0%
CTCAACATTAATCCCTCATG+CGG + chr4_4:59637023-59637042 Msa0691480:exon 40.0%
TCAACATTAATCCCTCATGC+GGG + chr4_4:59637024-59637043 Msa0691480:exon 40.0%
TCTGCATGTGATTGAGGTAT+TGG + chr4_4:59637049-59637068 Msa0691480:three_prime_UTR 40.0%
!! CATGTGATTGAGGTATTGGA+TGG + chr4_4:59637053-59637072 Msa0691480:three_prime_UTR 40.0%
!! TGTGATTGAGGTATTGGATG+GGG + chr4_4:59637055-59637074 Msa0691480:three_prime_UTR 40.0%
AGTTGGCATGGATAATGCAT+TGG - chr4_4:59637238-59637257 None:intergenic 40.0%
ATACTCCTGCAATAAGCTGT+TGG + chr4_4:59637302-59637321 Msa0691480:three_prime_UTR 40.0%
GAATTCCAACAGCTTATTGC+AGG - chr4_4:59637310-59637329 None:intergenic 40.0%
!! GGATTTGATTCGGAGAGTTC+GGG - chr4_4:59632052-59632071 None:intergenic 45.0%
CAAGAGCTTTCGCATCTCAA+AGG - chr4_4:59632089-59632108 None:intergenic 45.0%
!! CTTTGAGATGCGAAAGCTCT+TGG + chr4_4:59632087-59632106 Msa0691480:CDS 45.0%
!! TTCGGGTTGATGATACAGAG+CGG + chr4_4:59632142-59632161 Msa0691480:CDS 45.0%
!! TACAGAGCGGACTATTCAAC+CGG + chr4_4:59632155-59632174 Msa0691480:CDS 45.0%
! TTGGATCGTGGTGTTTTTCG+TGG + chr4_4:59632271-59632290 Msa0691480:CDS 45.0%
! TGGATCGTGGTGTTTTTCGT+GGG + chr4_4:59632272-59632291 Msa0691480:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr4_4:59632615-59632634 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr4_4:59632616-59632635 None:intergenic 45.0%
TTTGACAAATGGCTCACTGC+TGG + chr4_4:59633028-59633047 Msa0691480:intron 45.0%
GTATGTGAAGGCTGCTCAAT+AGG + chr4_4:59633196-59633215 Msa0691480:intron 45.0%
! TACTTCTGAGCTGACTCACA+CGG - chr4_4:59633366-59633385 None:intergenic 45.0%
! GTGAGTCAGCTCAGAAGTAT+TGG + chr4_4:59633367-59633386 Msa0691480:CDS 45.0%
CATAAACGGAAGCAATCAGG+GGG + chr4_4:59633571-59633590 Msa0691480:CDS 45.0%
!! GAGTTGATAATGGCCGTATC+TGG + chr4_4:59633687-59633706 Msa0691480:CDS 45.0%
! GAGTAAACTCAAGTTCTGGC+TGG + chr4_4:59633769-59633788 Msa0691480:intron 45.0%
! TTCACCACTTGGTGAAACGT+CGG - chr4_4:59633856-59633875 None:intergenic 45.0%
GCACTCAAGTATTCACCACT+TGG - chr4_4:59633867-59633886 None:intergenic 45.0%
CTAAGAATGCTGCAAACCTC+TGG - chr4_4:59634016-59634035 None:intergenic 45.0%
TTACACGACCAGAGGTCAAA+GGG - chr4_4:59634040-59634059 None:intergenic 45.0%
TATTACACCAAATGGGCCTG+AGG + chr4_4:59634262-59634281 Msa0691480:CDS 45.0%
AGTAAAACCTCAGGCCCATT+TGG - chr4_4:59634272-59634291 None:intergenic 45.0%
CAAAATAAACACCTGCCCTG+CGG + chr4_4:59634562-59634581 Msa0691480:intron 45.0%
CGTGCATTCAACATTTGAGG+GGG + chr4_4:59635010-59635029 Msa0691480:CDS 45.0%
CAACAATGTTCTGATGCAGC+AGG + chr4_4:59635034-59635053 Msa0691480:CDS 45.0%
TCATTCTTTGTAGGAGGCCT+AGG + chr4_4:59635167-59635186 Msa0691480:intron 45.0%
TTGTCATGCTTAGTCCCGAA+AGG + chr4_4:59635624-59635643 Msa0691480:intron 45.0%
GTTAACTGAGATGGGATGAC+AGG - chr4_4:59636228-59636247 None:intergenic 45.0%
GATAGAAGCTTCTACCAACC+AGG - chr4_4:59636322-59636341 None:intergenic 45.0%
TCAATAGGTCTCGCTCTCTT+AGG - chr4_4:59636384-59636403 None:intergenic 45.0%
AGTCTGCCTTCATTCTAGTG+AGG + chr4_4:59636455-59636474 Msa0691480:intron 45.0%
!! TTATCAGCTTGCTGAGGACT+TGG + chr4_4:59636554-59636573 Msa0691480:CDS 45.0%
!! TATCAGCTTGCTGAGGACTT+GGG + chr4_4:59636555-59636574 Msa0691480:CDS 45.0%
! TTTACCAGCCGGTTCATTGA+AGG + chr4_4:59636632-59636651 Msa0691480:CDS 45.0%
TTTACCTTCAATGAACCGGC+TGG - chr4_4:59636639-59636658 None:intergenic 45.0%
! TTGCATTTTGTCTCCTCTGC+AGG + chr4_4:59636763-59636782 Msa0691480:intron 45.0%
GTCTTCGTCCACACTAATCA+AGG - chr4_4:59636819-59636838 None:intergenic 45.0%
CGAAGTTCAGCACATAGCTT+TGG - chr4_4:59636905-59636924 None:intergenic 45.0%
TTAACCAAGGCAAGTGCATG+CGG - chr4_4:59636929-59636948 None:intergenic 45.0%
CTTGCCTTGGTTAACTCCTT+TGG + chr4_4:59636935-59636954 Msa0691480:CDS 45.0%
ATAGGGCTCAAAAACGCATC+AGG - chr4_4:59636965-59636984 None:intergenic 45.0%
TGAGCCCTATTGCATACAAC+TGG + chr4_4:59636975-59636994 Msa0691480:CDS 45.0%
GAGCCCTATTGCATACAACT+GGG + chr4_4:59636976-59636995 Msa0691480:CDS 45.0%
AAGTGAATAAGTGGGGTGTG+TGG + chr4_4:59637186-59637205 Msa0691480:three_prime_UTR 45.0%
AGTGAATAAGTGGGGTGTGT+GGG + chr4_4:59637187-59637206 Msa0691480:three_prime_UTR 45.0%
ATTGGTATATGCAGGGGTCA+GGG - chr4_4:59637220-59637239 None:intergenic 45.0%
AGAGCATAACTCAGTTGGCA+TGG - chr4_4:59637250-59637269 None:intergenic 45.0%
TGCCAACTGAGTTATGCTCT+CGG + chr4_4:59637250-59637269 Msa0691480:three_prime_UTR 45.0%
CGGTTGTTGTCCATGGTCAA+TGG - chr4_4:59631929-59631948 None:intergenic 50.0%
GTTGTGGAGGATTGTTGGTG+CGG - chr4_4:59632005-59632024 None:intergenic 50.0%
GCGTAGTTGTGGAGGATTGT+TGG - chr4_4:59632010-59632029 None:intergenic 50.0%
TAAGGCAAGCGTAGTTGTGG+AGG - chr4_4:59632018-59632037 None:intergenic 50.0%
AGCTAAGGCAAGCGTAGTTG+TGG - chr4_4:59632021-59632040 None:intergenic 50.0%
!! TTTGATTCGGAGAGTTCGGG+AGG - chr4_4:59632049-59632068 None:intergenic 50.0%
GAGATGCGAAAGCTCTTGGA+CGG + chr4_4:59632091-59632110 Msa0691480:CDS 50.0%
ACAATCTGGAAGATCGCGAC+TGG + chr4_4:59632116-59632135 Msa0691480:CDS 50.0%
! GAAGATCGCGACTGGCTATT+CGG + chr4_4:59632124-59632143 Msa0691480:CDS 50.0%
! AAGATCGCGACTGGCTATTC+GGG + chr4_4:59632125-59632144 Msa0691480:CDS 50.0%
! ATCGTGGTGTTTTTCGTGGG+TGG + chr4_4:59632275-59632294 Msa0691480:CDS 50.0%
! GTTTTTCGTGGGTGGCTTAC+TGG + chr4_4:59632283-59632302 Msa0691480:CDS 50.0%
ATGGCCCACAAGAAGAGTTG+AGG + chr4_4:59632308-59632327 Msa0691480:CDS 50.0%
! GAGGAAGTTGGCTCTTCATG+AGG + chr4_4:59632327-59632346 Msa0691480:CDS 50.0%
!! ACTAAGTGGGGTTGGCTACA+TGG - chr4_4:59632603-59632622 None:intergenic 50.0%
ATGTAGCCAACCCCACTTAG+TGG + chr4_4:59632602-59632621 Msa0691480:intron 50.0%
TGTAGCCAACCCCACTTAGT+GGG + chr4_4:59632603-59632622 Msa0691480:intron 50.0%
CTTATCCCACTAAGTGGGGT+TGG - chr4_4:59632611-59632630 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG + chr4_4:59632609-59632628 Msa0691480:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr4_4:59632617-59632636 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr4_4:59632614-59632633 Msa0691480:intron 50.0%
! GGGATAAGGCTTGGTTGTTG+TGG + chr4_4:59632623-59632642 Msa0691480:intron 50.0%
! AATTGGCATGGCAGCTTTGG+TGG - chr4_4:59632655-59632674 None:intergenic 50.0%
GGTGGGGCTGTAAAGTTTCT+GGG + chr4_4:59633079-59633098 Msa0691480:CDS 50.0%
TAGCTCTCAGCCACTTGTCA+TGG - chr4_4:59633117-59633136 None:intergenic 50.0%
! CTATGTCTGAGTTGGGCCAT+GGG + chr4_4:59633167-59633186 Msa0691480:CDS 50.0%
! GAGTGATTTTCACAGGTCCG+AGG + chr4_4:59633285-59633304 Msa0691480:intron 50.0%
!! GCTCAGAAGTATTGGATCGG+TGG + chr4_4:59633375-59633394 Msa0691480:CDS 50.0%
TCGGTGGTGCAGCAAATGTA+AGG + chr4_4:59633391-59633410 Msa0691480:intron 50.0%
GCCCAAATCAGGGATTCAGA+TGG + chr4_4:59633608-59633627 Msa0691480:CDS 50.0%
GTATGTCTTCTGTGCTCCAG+AGG + chr4_4:59633997-59634016 Msa0691480:intron 50.0%
TTCTTAGCCCCTTTGACCTC+TGG + chr4_4:59634029-59634048 Msa0691480:CDS 50.0%
TACACGACCAGAGGTCAAAG+GGG - chr4_4:59634039-59634058 None:intergenic 50.0%
GTTACACGACCAGAGGTCAA+AGG - chr4_4:59634041-59634060 None:intergenic 50.0%
GGCAATAGTTACACGACCAG+AGG - chr4_4:59634048-59634067 None:intergenic 50.0%
! GTAGCAGGTTCTGATGCAGT+AGG + chr4_4:59635105-59635124 Msa0691480:intron 50.0%
ATAGGTCTCGCTCTCTTAGG+TGG - chr4_4:59636381-59636400 None:intergenic 50.0%
CCTCAGCAAGCTGATAACTC+TGG - chr4_4:59636551-59636570 None:intergenic 50.0%
!! CCAGAGTTATCAGCTTGCTG+AGG + chr4_4:59636548-59636567 Msa0691480:intron 50.0%
TCTCCTCTGCAGGATGTCTT+AGG + chr4_4:59636773-59636792 Msa0691480:intron 50.0%
AGACCTAAGACATCCTGCAG+AGG - chr4_4:59636779-59636798 None:intergenic 50.0%
ACATGCAGAAACCCGCATGA+GGG - chr4_4:59637038-59637057 None:intergenic 50.0%
CGGGTTTCTGCATGTGATTG+AGG + chr4_4:59637043-59637062 Msa0691480:three_prime_UTR 50.0%
!! TTGAGGTATTGGATGGGGTG+TGG + chr4_4:59637060-59637079 Msa0691480:three_prime_UTR 50.0%
GTGAATAAGTGGGGTGTGTG+GGG + chr4_4:59637188-59637207 Msa0691480:three_prime_UTR 50.0%
CATTGGTATATGCAGGGGTC+AGG - chr4_4:59637221-59637240 None:intergenic 50.0%
GCCAACTGAGTTATGCTCTC+GGG + chr4_4:59637251-59637270 Msa0691480:three_prime_UTR 50.0%
CCAACTGAGTTATGCTCTCG+GGG + chr4_4:59637252-59637271 Msa0691480:three_prime_UTR 50.0%
GGTGATGCGGTTGTTGTCCA+TGG - chr4_4:59631936-59631955 None:intergenic 55.0%
TGGACAACAACCGCATCACC+TGG + chr4_4:59631936-59631955 Msa0691480:CDS 55.0%
GAGGTGATTGGTGAGGATGG+TGG - chr4_4:59631966-59631985 None:intergenic 55.0%
GGATTGTTGGTGCGGTTGGT+GGG - chr4_4:59631997-59632016 None:intergenic 55.0%
AGGATTGTTGGTGCGGTTGG+TGG - chr4_4:59631998-59632017 None:intergenic 55.0%
TGGAGGATTGTTGGTGCGGT+TGG - chr4_4:59632001-59632020 None:intergenic 55.0%
GTTCGGGAGGAGAGTAGCTA+AGG - chr4_4:59632036-59632055 None:intergenic 55.0%
GCTCTTGGACGGTCACAATC+TGG + chr4_4:59632102-59632121 Msa0691480:CDS 55.0%
!! AGAGCGGACTATTCAACCGG+CGG + chr4_4:59632158-59632177 Msa0691480:CDS 55.0%
ACCAGTCCATGGAGCAACAG+AGG + chr4_4:59632218-59632237 Msa0691480:CDS 55.0%
CCAGTCCATGGAGCAACAGA+GGG + chr4_4:59632219-59632238 Msa0691480:CDS 55.0%
CATCTCCCTCTGTTGCTCCA+TGG - chr4_4:59632227-59632246 None:intergenic 55.0%
GGGTGGGGCTGTAAAGTTTC+TGG + chr4_4:59633078-59633097 Msa0691480:CDS 55.0%
! CCACTTGTCATGGTGACGCT+TGG - chr4_4:59633107-59633126 None:intergenic 55.0%
CCAAGCGTCACCATGACAAG+TGG + chr4_4:59633104-59633123 Msa0691480:CDS 55.0%
! GCTATGTCTGAGTTGGGCCA+TGG + chr4_4:59633166-59633185 Msa0691480:CDS 55.0%
CTGGCTGGACATCTGACTTC+AGG + chr4_4:59633784-59633803 Msa0691480:intron 55.0%
! ACTTGGTGAAACGTCGGCCA+CGG - chr4_4:59633850-59633869 None:intergenic 55.0%
ACATATATGAGCCGCAGGGC+AGG - chr4_4:59634576-59634595 None:intergenic 55.0%
! GTAGGCTACTGGCCTCACTA+AGG + chr4_4:59634892-59634911 Msa0691480:intron 55.0%
CAGGAATGCCGTGAAGCATG+TGG + chr4_4:59634933-59634952 Msa0691480:intron 55.0%
GAATGCCGTGAAGCATGTGG+AGG + chr4_4:59634936-59634955 Msa0691480:CDS 55.0%
CCTGTCCTCCACATGCTTCA+CGG - chr4_4:59634944-59634963 None:intergenic 55.0%
CGTGAAGCATGTGGAGGACA+GGG + chr4_4:59634942-59634961 Msa0691480:CDS 55.0%
GCTGTAGCACTGTTGCGTAG+TGG + chr4_4:59636023-59636042 Msa0691480:intron 55.0%
GCTGAGTCAGCTTTACCAGC+CGG + chr4_4:59636621-59636640 Msa0691480:CDS 55.0%
GACGCTGCCTTTCTCCGATA+TGG + chr4_4:59636836-59636855 Msa0691480:CDS 55.0%
CACATGCAGAAACCCGCATG+AGG - chr4_4:59637039-59637058 None:intergenic 55.0%
! CCCCGAGAGCATAACTCAGT+TGG - chr4_4:59637255-59637274 None:intergenic 55.0%
TATGCTCTCGGGGACCAATG+TGG + chr4_4:59637262-59637281 Msa0691480:three_prime_UTR 55.0%
TGGTGGTTCGCCAGGTGATG+CGG - chr4_4:59631949-59631968 None:intergenic 60.0%
GCGGAGGTGATTGGTGAGGA+TGG - chr4_4:59631969-59631988 None:intergenic 60.0%
!! GAGCGGACTATTCAACCGGC+GGG + chr4_4:59632159-59632178 Msa0691480:CDS 60.0%
TTCAACCGGCGGGAAGTCGA+CGG + chr4_4:59632169-59632188 Msa0691480:CDS 60.0%
CCCTCTGTTGCTCCATGGAC+TGG - chr4_4:59632222-59632241 None:intergenic 60.0%
CGTGGGTGGCTTACTGGTGA+TGG + chr4_4:59632289-59632308 Msa0691480:CDS 60.0%
GTGGCCGACGTTTCACCAAG+TGG + chr4_4:59633849-59633868 Msa0691480:CDS 60.0%
CCGTGAAGCATGTGGAGGAC+AGG + chr4_4:59634941-59634960 Msa0691480:CDS 60.0%
CACACGTGCGTGCACTGAGA+AGG - chr4_4:59636686-59636705 None:intergenic 60.0%
TCGACCGCATGCACTTGCCT+TGG + chr4_4:59636922-59636941 Msa0691480:CDS 60.0%
! GGTGAGGATGGTGGTTCGCC+AGG - chr4_4:59631957-59631976 None:intergenic 65.0%
! CGTGGCGGAGGTGATTGGTG+AGG - chr4_4:59631973-59631992 None:intergenic 65.0%
! TGGGTCGTGGCGGAGGTGAT+TGG - chr4_4:59631978-59631997 None:intergenic 65.0%
!! TTGGTGCGGTTGGTGGGTCG+TGG - chr4_4:59631991-59632010 None:intergenic 65.0%
!! GTGCGGTTGGTGGGTCGTGG+CGG - chr4_4:59631988-59632007 None:intergenic 70.0%
!! CGGTTGGTGGGTCGTGGCGG+AGG - chr4_4:59631985-59632004 None:intergenic 75.0%
ACCGGCGGGAAGTCGACGGC+AGG + chr4_4:59632173-59632192 Msa0691480:CDS 75.0%
!! CCCTGCCGTCGACTTCCCGC+CGG - chr4_4:59632177-59632196 None:intergenic 75.0%
CCGGCGGGAAGTCGACGGCA+GGG + chr4_4:59632174-59632193 Msa0691480:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59631731 59637420 59631731 ID=Msa0691480;Name=Msa0691480
chr4_4 mRNA 59631731 59637420 59631731 ID=Msa0691480-mRNA-1;Parent=Msa0691480;Name=Msa0691480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=204|1|1|1|1|1|13|387|678
chr4_4 exon 59631731 59632407 59631731 ID=Msa0691480-mRNA-1:exon:16213;Parent=Msa0691480-mRNA-1
chr4_4 exon 59633078 59633195 59633078 ID=Msa0691480-mRNA-1:exon:16214;Parent=Msa0691480-mRNA-1
chr4_4 exon 59633300 59633407 59633300 ID=Msa0691480-mRNA-1:exon:16215;Parent=Msa0691480-mRNA-1
chr4_4 exon 59633536 59633708 59633536 ID=Msa0691480-mRNA-1:exon:16216;Parent=Msa0691480-mRNA-1
chr4_4 exon 59633806 59633905 59633806 ID=Msa0691480-mRNA-1:exon:16217;Parent=Msa0691480-mRNA-1
chr4_4 exon 59634017 59634091 59634017 ID=Msa0691480-mRNA-1:exon:16218;Parent=Msa0691480-mRNA-1
chr4_4 exon 59634212 59634342 59634212 ID=Msa0691480-mRNA-1:exon:16219;Parent=Msa0691480-mRNA-1
chr4_4 exon 59634711 59634846 59634711 ID=Msa0691480-mRNA-1:exon:16220;Parent=Msa0691480-mRNA-1
chr4_4 exon 59634936 59635055 59634936 ID=Msa0691480-mRNA-1:exon:16221;Parent=Msa0691480-mRNA-1
chr4_4 exon 59636132 59636278 59636132 ID=Msa0691480-mRNA-1:exon:16222;Parent=Msa0691480-mRNA-1
chr4_4 exon 59636367 59636471 59636367 ID=Msa0691480-mRNA-1:exon:16223;Parent=Msa0691480-mRNA-1
chr4_4 exon 59636552 59636653 59636552 ID=Msa0691480-mRNA-1:exon:16224;Parent=Msa0691480-mRNA-1
chr4_4 exon 59636785 59637420 59636785 ID=Msa0691480-mRNA-1:exon:16225;Parent=Msa0691480-mRNA-1
chr4_4 five_prime_UTR 59631731 59631934 59631731 ID=Msa0691480-mRNA-1:five_prime_utr;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59631935 59632407 59631935 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59633078 59633195 59633078 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59633300 59633407 59633300 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59633536 59633708 59633536 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59633806 59633905 59633806 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59634017 59634091 59634017 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59634212 59634342 59634212 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59634711 59634846 59634711 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59634936 59635055 59634936 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59636132 59636278 59636132 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59636367 59636471 59636367 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59636552 59636653 59636552 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 CDS 59636785 59637033 59636785 ID=Msa0691480-mRNA-1:cds;Parent=Msa0691480-mRNA-1
chr4_4 three_prime_UTR 59637034 59637420 59637034 ID=Msa0691480-mRNA-1:three_prime_utr;Parent=Msa0691480-mRNA-1
Gene Sequence

>Msa0691480

ATGGACAACAACCGCATCACCTGGCGAACCACCATCCTCACCAATCACCTCCGCCACGACCCACCAACCGCACCAACAATCCTCCACAACTACGCTTGCCTTAGCTACTCTCCTCCCGAACTCTCCGAATCAAATCCAACAACATTCGACACCTTTGAGATGCGAAAGCTCTTGGACGGTCACAATCTGGAAGATCGCGACTGGCTATTCGGGTTGATGATACAGAGCGGACTATTCAACCGGCGGGAAGTCGACGGCAGGGTGTTTGTGAATCCTGATTATAACCAGTCCATGGAGCAACAGAGGGAGATGACCATGAAACGAATTGCGTATTTGTTGGATCGTGGTGTTTTTCGTGGGTGGCTTACTGGTGATGGCCCACAAGAAGAGTTGAGGAAGTTGGCTCTTCATGAGGTTATTGGAATGTATGATCATTCTCTTGCTGTTAAGCTTGGTGTTCATATCTTCTTGTGGGGTGGGGCTGTAAAGTTTCTGGGAACCAAGCGTCACCATGACAAGTGGCTGAGAGCTACTGAAAACTATGACATCAAGGGTTGTTTTGCTATGTCTGAGTTGGGCCATGGGAGTAATGTCCGAGGAATTGAAACTGTCACTACTTATGATCCAAATTCTGGTGAGTTTGTCATCAATACTCCGTGTGAGTCAGCTCAGAAGTATTGGATCGGTGGTGCAGCAAATCATGCAACACATACTATAGTCTTTTCACAGCTCAACATAAACGGAAGCAATCAGGGGGTGCATGCTTTTATTGCCCAAATCAGGGATTCAGATGGAAACATATGCCCAAATATCCGAATAGCTGAATGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGGTTTGACAATGTGAGAATACCCAGAGAGAATTTGTTAAATTCCGTGGCCGACGTTTCACCAAGTGGTGAATACTTGAGTGCAATAAAAAATACAGATCAGAGGTTTGCAGCATTCTTAGCCCCTTTGACCTCTGGTCGTGTAACTATTGCCGTCAGTTCTGTTTACATCTCCAAGATAAGCTTAGCCATTGCTATAAGATATGCATTGACAAGGCGGGCCTTTTCTATTACACCAAATGGGCCTGAGGTTTTACTGCTTGATTACCCAAGTCATCAACAACGTCTATTACCTTTACTTGCGAAGATATATGCAATGAGCTTTTCTGCAATTGAGCTCAAAAAGATGTATGTGAATAGAACGCCTGAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCATACAAGGCTACTTTTACATGGAATAATATGCGTACTCTTCAGGAATGCCGTGAAGCATGTGGAGGACAGGGCGTCAAAACTGAAAACCGTATTGGTCAATTTAAGGGTGAATATGACGTGCATTCAACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGATAAGCAAGGCGCTCCTTGCAGAATACATAGCATGTCAGACAAAAAACAAACCATTTAAAGGTCTTGGATTAGAACATATGAACGGATCTTGTCCTGTCATCCCATCTCAGTTAACAAGTTCTACCATCAAGAGCAGTGAATTTCAGATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAAACGTTTTGCTATAGAGGTTTCAGAACATCAATCTCAAGGAAATAGCAAGGAGTCTGCCTTCATTCTAAGTTATCAGCTTGCTGAGGACTTGGGCAGAGCTTTCTCTGAACGAGCAATACTGAAAACATTTATGGAGGCTGAGTCAGCTTTACCAGCCGGTTCATTGAAGGATGTCTTAGGTCTGTTAAGATCGTTATATGCCTTGATTAGTGTGGACGAAGACGCTGCCTTTCTCCGATATGGATACTTGTCAACAGAAAATGCTTCTGTAGTGAGGAAAGAAGTTCCAAAGCTATGTGCTGAACTTCGACCGCATGCACTTGCCTTGGTTAACTCCTTTGGTATTCCTGATGCGTTTTTGAGCCCTATTGCATACAACTGGGTTGAGTCAAATTCTTGGTCTACTGCTCAACATTAA
Protein sequence

>Msa0691480

MDNNRITWRTTILTNHLRHDPPTAPTILHNYACLSYSPPELSESNPTTFDTFEMRKLLDGHNLEDRDWLFGLMIQSGLFNRREVDGRVFVNPDYNQSMEQQREMTMKRIAYLLDRGVFRGWLTGDGPQEELRKLALHEVIGMYDHSLAVKLGVHIFLWGGAVKFLGTKRHHDKWLRATENYDIKGCFAMSELGHGSNVRGIETVTTYDPNSGEFVINTPCESAQKYWIGGAANHATHTIVFSQLNINGSNQGVHAFIAQIRDSDGNICPNIRIAECGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPSGEYLSAIKNTDQRFAAFLAPLTSGRVTIAVSSVYISKISLAIAIRYALTRRAFSITPNGPEVLLLDYPSHQQRLLPLLAKIYAMSFSAIELKKMYVNRTPESNKAIHIVSSAYKATFTWNNMRTLQECREACGGQGVKTENRIGQFKGEYDVHSTFEGDNNVLMQQISKALLAEYIACQTKNKPFKGLGLEHMNGSCPVIPSQLTSSTIKSSEFQIDLFHLRERDLLKRFAIEVSEHQSQGNSKESAFILSYQLAEDLGRAFSERAILKTFMEAESALPAGSLKDVLGLLRSLYALISVDEDAAFLRYGYLSTENASVVRKEVPKLCAELRPHALALVNSFGIPDAFLSPIAYNWVESNSWSTAQH*