AlfalfaGEDB | Msa0611250

M. sativa cultivar zhongmu-4 / Msa0611250

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611250	XP_003607934.1	94.098	305	17	1	1	305	1	304	0.0	545

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611250	sp\|Q9FXA3\|BH095_ARATH	33.333	324	160	8	12	305	9	306	8.43e-42	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611250	G7JK21	94.098	305	17	1	1	305	1	304	0.0	545

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TFs/TRs:

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Gene ID	Type	Classification
Msa0611250	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0611170	Msa0611250	0.848590	5.564033e-60	-8.615850e-47
Msa0611250	Msa0694010	0.845852	3.136385e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611250	MtrunA17_Chr4g0044621	89.869	306	29	2	1	305	1	305	0.0	509
Msa0611250	MtrunA17_Chr4g0044611	93.548	279	17	1	1	279	1	278	1.72e-177	492
Msa0611250	MtrunA17_Chr4g0042511	43.214	280	121	7	1	279	1	243	4.18e-50	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611250	AT1G49770.1	33.333	324	160	8	12	305	9	306	8.57e-43	149

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Find 63 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATTGAACCAGAAAGA+AGG	0.568529	4_2:+59373489	Msa0611250:CDS
AAACCTACTTGTTGCATTTG+AGG	0.351914	4_2:-59374529	None:intergenic
AATCAACGAAGGAGATGCTC+CGG	0.562362	4_2:+59373512	Msa0611250:CDS
AATGCTTCCCTTGATTCATA+GGG	0.521692	4_2:-59374418	None:intergenic
AATGTTGTACTAAACATATG+TGG	0.641101	4_2:+59374571	Msa0611250:CDS
ACAGATGACTCACTCCCAAA+TGG	0.463724	4_2:-59374376	None:intergenic
ACATATTGACTGAAAGAGAA+AGG	0.558067	4_2:+59373640	Msa0611250:CDS
ACGAAGGAGATGCTCCGGTG+AGG	0.689033	4_2:+59373517	Msa0611250:CDS
ACGTGACGCAAATTCAATGA+AGG	0.564753	4_2:+59375025	Msa0611250:CDS
AGAAGGAAGTTCAGGAAGCA+AGG	0.555351	4_2:-59373700	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCCCAAATTCTGATAATTT+AGG	+	chr4_2:59373438-59373457	Msa0611250:CDS	30.0%
TCCAAGTTTGACATTGTATT+CGG	-	chr4_2:59373951-59373970	None:intergenic	30.0%
TTGAAAAGAAGAAGCAAGAA+AGG	+	chr4_2:59374338-59374357	Msa0611250:CDS	30.0%
AAAATGATAAAGAGGAGAGA+AGG	-	chr4_2:59374757-59374776	None:intergenic	30.0%
CTCCCAAATTCTGATAATTT+AGG	+	chr4_2:59373438-59373457	Msa0611250:CDS	30.0%
TCCAAGTTTGACATTGTATT+CGG	-	chr4_2:59373951-59373970	None:intergenic	30.0%
TTGAAAAGAAGAAGCAAGAA+AGG	+	chr4_2:59374338-59374357	Msa0611250:CDS	30.0%
AAAATGATAAAGAGGAGAGA+AGG	-	chr4_2:59374757-59374776	None:intergenic	30.0%
TTGATCATGATCTACACTCA+TGG	-	chr4_2:59373373-59373392	None:intergenic	35.0%
ATGAGTGTAGATCATGATCA+AGG	+	chr4_2:59373372-59373391	Msa0611250:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	59373366	59375094	59373366	ID=Msa0611250;Name=Msa0611250
chr4_2	mRNA	59373366	59375094	59373366	ID=Msa0611250-mRNA-1;Parent=Msa0611250;Name=Msa0611250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|3\|0\|305
chr4_2	exon	59373366	59373725	59373366	ID=Msa0611250-mRNA-1:exon:15716;Parent=Msa0611250-mRNA-1
chr4_2	exon	59374268	59374741	59374268	ID=Msa0611250-mRNA-1:exon:15717;Parent=Msa0611250-mRNA-1
chr4_2	exon	59375011	59375094	59375011	ID=Msa0611250-mRNA-1:exon:15718;Parent=Msa0611250-mRNA-1
chr4_2	CDS	59373366	59373725	59373366	ID=Msa0611250-mRNA-1:cds;Parent=Msa0611250-mRNA-1
chr4_2	CDS	59374268	59374741	59374268	ID=Msa0611250-mRNA-1:cds;Parent=Msa0611250-mRNA-1
chr4_2	CDS	59375011	59375094	59375011	ID=Msa0611250-mRNA-1:cds;Parent=Msa0611250-mRNA-1

Gene Sequence

>Msa0611250

ATGGCCATGAGTGTAGATCATGATCAAGGTGTTCAGACAGGTTTCATTTGGGAAAATCATCCATGGGGTGATCTCCCAAATTCTGATAATTTAGGTGAGAGTAGCAAAAAAAGAATAGACACAAAACCATTGAACCAGAAAGAAGGAATCAACGAAGGAGATGCTCCGGTGAGGAAGAAGAGAAACCGGGGTGGGGTTGTAATTAGAAGTGAGAATAATATTACAACTGATGAAGAAAAAGATAGAAAGTATCGTGATTTTGATCATGAAATGCACATATTGACTGAAAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGATAGCCTTCATGCCTTGCTTCCTGAACTTCCTTCTAAGGCTGATAAATCAACCATTGTAGATGCAGCAATGAAGCACATTAAAAATCTGCAAGAAATTAAGGAAAAGCTTGAAAAGAAGAAGCAAGAAAGGCTCAAATGTGTATCCCCATTTGGGAGTGAGTCATCTGTGATCAACTCACAGTGGCATCCCTATGAATCAAGGGAAGCATTCTTAGCTGATCAAGGATCCTCAAGTTATAATAATAACTTGTCTAGCGCAACTGTAACTTCAAATCCTTCAAATAATGCATTTTCAATACCTCAAATGCAACAAGTAGGTTTTCAAACATGGTCTTCTCAAAATGTTGTACTAAACATATGTGGTGGTGAAGCACAATTTTGCATTTGTGCAACTAAGAAGCCTGGTCTCTTGACCACAATTGCTTTGGTGTTGGAGAAACATAAGATTGATGTTATTTCTGCCAACATCATGTGCAATGCAAATGAAAATTTCTACATGATTATGGCCCATGCAAAACAAGCTTCACGTGACGCAAATTCAATGAAGGAAACATACAAGCATGCGGCTGGAGAAATTATGATGTGGATCGCTTAG

Protein sequence

>Msa0611250

MAMSVDHDQGVQTGFIWENHPWGDLPNSDNLGESSKKRIDTKPLNQKEGINEGDAPVRKKRNRGGVVIRSENNITTDEEKDRKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKADKSTIVDAAMKHIKNLQEIKEKLEKKKQERLKCVSPFGSESSVINSQWHPYESREAFLADQGSSSYNNNLSSATVTSNPSNNAFSIPQMQQVGFQTWSSQNVVLNICGGEAQFCICATKKPGLLTTIALVLEKHKIDVISANIMCNANENFYMIMAHAKQASRDANSMKETYKHAAGEIMMWIA*