Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611250 | XP_003607934.1 | 94.098 | 305 | 17 | 1 | 1 | 305 | 1 | 304 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611250 | sp|Q9FXA3|BH095_ARATH | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 8.43e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611250 | G7JK21 | 94.098 | 305 | 17 | 1 | 1 | 305 | 1 | 304 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0611250 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611170 | Msa0611250 | 0.848590 | 5.564033e-60 | -8.615850e-47 |
| Msa0611250 | Msa0694010 | 0.845852 | 3.136385e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611250 | MtrunA17_Chr4g0044621 | 89.869 | 306 | 29 | 2 | 1 | 305 | 1 | 305 | 0.0 | 509 |
| Msa0611250 | MtrunA17_Chr4g0044611 | 93.548 | 279 | 17 | 1 | 1 | 279 | 1 | 278 | 1.72e-177 | 492 |
| Msa0611250 | MtrunA17_Chr4g0042511 | 43.214 | 280 | 121 | 7 | 1 | 279 | 1 | 243 | 4.18e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611250 | AT1G49770.1 | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 8.57e-43 | 149 |
Find 63 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTGATTCCTTCTTTC+TGG | 0.071265 | 4_2:-59373500 | None:intergenic |
| TCACCTAAATTATCAGAATT+TGG | 0.105182 | 4_2:-59373441 | None:intergenic |
| TGAAAATTTCTACATGATTA+TGG | 0.218947 | 4_2:+59374714 | Msa0611250:CDS |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.231106 | 4_2:+59373704 | Msa0611250:CDS |
| CTCCCAAATTCTGATAATTT+AGG | 0.240479 | 4_2:+59373438 | Msa0611250:CDS |
| GAAAATGAATTTACCTTAGA+AGG | 0.295761 | 4_2:-59373717 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4_2:-59374419 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.303231 | 4_2:-59373492 | None:intergenic |
| CACCTAAATTATCAGAATTT+GGG | 0.327226 | 4_2:-59373440 | None:intergenic |
| CTCAAATGTGTATCCCCATT+TGG | 0.335851 | 4_2:+59374361 | Msa0611250:CDS |
| AAACCTACTTGTTGCATTTG+AGG | 0.351914 | 4_2:-59374529 | None:intergenic |
| GTGTTCAGACAGGTTTCATT+TGG | 0.354346 | 4_2:+59373394 | Msa0611250:CDS |
| TTTACCTTAGAAGGAAGTTC+AGG | 0.386490 | 4_2:-59373708 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.410651 | 4_2:+59374636 | Msa0611250:CDS |
| TCAAATGTGTATCCCCATTT+GGG | 0.412830 | 4_2:+59374362 | Msa0611250:CDS |
| CGGTTTCTCTTCTTCCTCAC+CGG | 0.413966 | 4_2:-59373531 | None:intergenic |
| ATTGAAAATGCATTATTTGA+AGG | 0.414433 | 4_2:-59374505 | None:intergenic |
| TGTTCAGACAGGTTTCATTT+GGG | 0.442568 | 4_2:+59373395 | Msa0611250:CDS |
| CGGTGAGGAAGAAGAGAAAC+CGG | 0.442669 | 4_2:+59373532 | Msa0611250:CDS |
| CAGATGACTCACTCCCAAAT+GGG | 0.455516 | 4_2:-59374375 | None:intergenic |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4_2:+59373655 | Msa0611250:CDS |
| ACAGATGACTCACTCCCAAA+TGG | 0.463724 | 4_2:-59374376 | None:intergenic |
| TTGAAAAGAAGAAGCAAGAA+AGG | 0.480003 | 4_2:+59374338 | Msa0611250:CDS |
| GAAACATACAAGCATGCGGC+TGG | 0.489565 | 4_2:+59375047 | Msa0611250:CDS |
| CATGATCAAGGTGTTCAGAC+AGG | 0.491804 | 4_2:+59373384 | Msa0611250:CDS |
| CTCCAACACCAAAGCAATTG+TGG | 0.500537 | 4_2:-59374644 | None:intergenic |
| CATTTGGGAAAATCATCCAT+GGG | 0.506047 | 4_2:+59373410 | Msa0611250:CDS |
| TCATTTGGGAAAATCATCCA+TGG | 0.517340 | 4_2:+59373409 | Msa0611250:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4_2:-59374418 | None:intergenic |
| GACCACAATTGCTTTGGTGT+TGG | 0.522135 | 4_2:+59374642 | Msa0611250:CDS |
| GAAGAAGAGAAACCGGGGTG+GGG | 0.528579 | 4_2:+59373539 | Msa0611250:CDS |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4_2:+59374410 | Msa0611250:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4_2:+59374613 | Msa0611250:CDS |
| CTTCATTGCTGCATCTACAA+TGG | 0.548628 | 4_2:-59374281 | None:intergenic |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4_2:+59374433 | Msa0611250:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4_2:-59373692 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4_2:-59373700 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4_2:+59373640 | Msa0611250:CDS |
| ATTTGCATTGCACATGATGT+TGG | 0.560264 | 4_2:-59374692 | None:intergenic |
| GGAAGAAGAGAAACCGGGGT+GGG | 0.561203 | 4_2:+59373538 | Msa0611250:CDS |
| AATCAACGAAGGAGATGCTC+CGG | 0.562362 | 4_2:+59373512 | Msa0611250:CDS |
| ACGTGACGCAAATTCAATGA+AGG | 0.564753 | 4_2:+59375025 | Msa0611250:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4_2:+59373489 | Msa0611250:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4_2:-59374631 | None:intergenic |
| ATACCTCAAATGCAACAAGT+AGG | 0.573192 | 4_2:+59374526 | Msa0611250:CDS |
| GGTGAGGAAGAAGAGAAACC+GGG | 0.579068 | 4_2:+59373533 | Msa0611250:CDS |
| CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4_2:-59374458 | None:intergenic |
| ATGAGTGTAGATCATGATCA+AGG | 0.591815 | 4_2:+59373372 | Msa0611250:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.598595 | 4_2:-59373370 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4_2:+59374411 | Msa0611250:CDS |
| AATGTTGTACTAAACATATG+TGG | 0.641101 | 4_2:+59374571 | Msa0611250:CDS |
| TTCTAATTACAACCCCACCC+CGG | 0.641970 | 4_2:-59373551 | None:intergenic |
| CAGAAAGAAGGAATCAACGA+AGG | 0.651154 | 4_2:+59373501 | Msa0611250:CDS |
| AGATGACTCACTCCCAAATG+GGG | 0.669367 | 4_2:-59374374 | None:intergenic |
| AGGAAGAAGAGAAACCGGGG+TGG | 0.676084 | 4_2:+59373537 | Msa0611250:CDS |
| GAAGGAAACATACAAGCATG+CGG | 0.683731 | 4_2:+59375043 | Msa0611250:CDS |
| CGGCTGGAGAAATTATGATG+TGG | 0.687301 | 4_2:+59375063 | Msa0611250:CDS |
| ACGAAGGAGATGCTCCGGTG+AGG | 0.689033 | 4_2:+59373517 | Msa0611250:CDS |
| ATTTGGGAAAATCATCCATG+GGG | 0.693011 | 4_2:+59373411 | Msa0611250:CDS |
| GAATTTGGGAGATCACCCCA+TGG | 0.708355 | 4_2:-59373426 | None:intergenic |
| GTGAGGAAGAAGAGAAACCG+GGG | 0.718521 | 4_2:+59373534 | Msa0611250:CDS |
| GTTGTACTAAACATATGTGG+TGG | 0.748360 | 4_2:+59374574 | Msa0611250:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4_2:+59374392 | Msa0611250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTATATTTTAC+AGG | + | chr4_2:59374246-59374265 | Msa0611250:intron | 10.0% |
| !!! | ATTTGATTTTTATATTTTAC+AGG | + | chr4_2:59374246-59374265 | Msa0611250:intron | 10.0% |
| !! | AATATAACAAAATGATAAAG+AGG | - | chr4_2:59374765-59374784 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | + | chr4_2:59374827-59374846 | Msa0611250:intron | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | - | chr4_2:59374920-59374939 | None:intergenic | 15.0% |
| !! | AATATAACAAAATGATAAAG+AGG | - | chr4_2:59374765-59374784 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | + | chr4_2:59374827-59374846 | Msa0611250:intron | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | - | chr4_2:59374920-59374939 | None:intergenic | 15.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | - | chr4_2:59373821-59373840 | None:intergenic | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | - | chr4_2:59373822-59373841 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | - | chr4_2:59374005-59374024 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | + | chr4_2:59374309-59374328 | Msa0611250:CDS | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | - | chr4_2:59374461-59374480 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | - | chr4_2:59374508-59374527 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | + | chr4_2:59374714-59374733 | Msa0611250:CDS | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | - | chr4_2:59374858-59374877 | None:intergenic | 20.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | - | chr4_2:59373821-59373840 | None:intergenic | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | - | chr4_2:59373822-59373841 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | - | chr4_2:59374005-59374024 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | + | chr4_2:59374309-59374328 | Msa0611250:CDS | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | - | chr4_2:59374461-59374480 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | - | chr4_2:59374508-59374527 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | + | chr4_2:59374714-59374733 | Msa0611250:CDS | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | - | chr4_2:59374858-59374877 | None:intergenic | 20.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | - | chr4_2:59373443-59373462 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | - | chr4_2:59373444-59373463 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | - | chr4_2:59373720-59373739 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | + | chr4_2:59374180-59374199 | Msa0611250:intron | 25.0% |
| ! | AATGTTGTACTAAACATATG+TGG | + | chr4_2:59374571-59374590 | Msa0611250:CDS | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | - | chr4_2:59374853-59374872 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | + | chr4_2:59374989-59375008 | Msa0611250:intron | 25.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | - | chr4_2:59373443-59373462 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | - | chr4_2:59373444-59373463 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | - | chr4_2:59373720-59373739 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | + | chr4_2:59374180-59374199 | Msa0611250:intron | 25.0% |
| ! | AATGTTGTACTAAACATATG+TGG | + | chr4_2:59374571-59374590 | Msa0611250:CDS | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | - | chr4_2:59374853-59374872 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | + | chr4_2:59374989-59375008 | Msa0611250:intron | 25.0% |
| CTCCCAAATTCTGATAATTT+AGG | + | chr4_2:59373438-59373457 | Msa0611250:CDS | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | + | chr4_2:59373640-59373659 | Msa0611250:CDS | 30.0% |
| TCCAAGTTTGACATTGTATT+CGG | - | chr4_2:59373951-59373970 | None:intergenic | 30.0% | |
| !! | AAACATCTTCATTAGTCTTG+AGG | - | chr4_2:59374225-59374244 | None:intergenic | 30.0% |
| TTGAAAAGAAGAAGCAAGAA+AGG | + | chr4_2:59374338-59374357 | Msa0611250:CDS | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | + | chr4_2:59374539-59374558 | Msa0611250:CDS | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | - | chr4_2:59374740-59374759 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | - | chr4_2:59374757-59374776 | None:intergenic | 30.0% | |
| CTCCCAAATTCTGATAATTT+AGG | + | chr4_2:59373438-59373457 | Msa0611250:CDS | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | + | chr4_2:59373640-59373659 | Msa0611250:CDS | 30.0% |
| TCCAAGTTTGACATTGTATT+CGG | - | chr4_2:59373951-59373970 | None:intergenic | 30.0% | |
| !! | AAACATCTTCATTAGTCTTG+AGG | - | chr4_2:59374225-59374244 | None:intergenic | 30.0% |
| TTGAAAAGAAGAAGCAAGAA+AGG | + | chr4_2:59374338-59374357 | Msa0611250:CDS | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | + | chr4_2:59374539-59374558 | Msa0611250:CDS | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | - | chr4_2:59374740-59374759 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | - | chr4_2:59374757-59374776 | None:intergenic | 30.0% | |
| TTGATCATGATCTACACTCA+TGG | - | chr4_2:59373373-59373392 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | + | chr4_2:59373372-59373391 | Msa0611250:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | + | chr4_2:59373395-59373414 | Msa0611250:CDS | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | + | chr4_2:59373409-59373428 | Msa0611250:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | + | chr4_2:59373410-59373429 | Msa0611250:CDS | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | + | chr4_2:59373411-59373430 | Msa0611250:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | + | chr4_2:59373489-59373508 | Msa0611250:CDS | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | - | chr4_2:59373495-59373514 | None:intergenic | 35.0% |
| GAGAAAGGAGAAAGAAAATG+AGG | + | chr4_2:59373655-59373674 | Msa0611250:CDS | 35.0% | |
| TTTACCTTAGAAGGAAGTTC+AGG | - | chr4_2:59373711-59373730 | None:intergenic | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | - | chr4_2:59373898-59373917 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | + | chr4_2:59373917-59373936 | Msa0611250:intron | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | + | chr4_2:59373918-59373937 | Msa0611250:intron | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | - | chr4_2:59373950-59373969 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | + | chr4_2:59374044-59374063 | Msa0611250:intron | 35.0% | |
| ! | AGAACTCGATTTTCATTCCT+GGG | - | chr4_2:59374107-59374126 | None:intergenic | 35.0% |
| CCACAAATGACGAATTGTTT+GGG | - | chr4_2:59374130-59374149 | None:intergenic | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | - | chr4_2:59374131-59374150 | None:intergenic | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | + | chr4_2:59374362-59374381 | Msa0611250:CDS | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | - | chr4_2:59374421-59374440 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | + | chr4_2:59374526-59374545 | Msa0611250:CDS | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | - | chr4_2:59374532-59374551 | None:intergenic | 35.0% |
| GTTGTACTAAACATATGTGG+TGG | + | chr4_2:59374574-59374593 | Msa0611250:CDS | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | - | chr4_2:59374695-59374714 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | - | chr4_2:59374741-59374760 | None:intergenic | 35.0% |
| TTGATCATGATCTACACTCA+TGG | - | chr4_2:59373373-59373392 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | + | chr4_2:59373372-59373391 | Msa0611250:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | + | chr4_2:59373395-59373414 | Msa0611250:CDS | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | + | chr4_2:59373409-59373428 | Msa0611250:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | + | chr4_2:59373410-59373429 | Msa0611250:CDS | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | + | chr4_2:59373411-59373430 | Msa0611250:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | + | chr4_2:59373489-59373508 | Msa0611250:CDS | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | - | chr4_2:59373495-59373514 | None:intergenic | 35.0% |
| GAGAAAGGAGAAAGAAAATG+AGG | + | chr4_2:59373655-59373674 | Msa0611250:CDS | 35.0% | |
| TTTACCTTAGAAGGAAGTTC+AGG | - | chr4_2:59373711-59373730 | None:intergenic | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | - | chr4_2:59373898-59373917 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | + | chr4_2:59373917-59373936 | Msa0611250:intron | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | + | chr4_2:59373918-59373937 | Msa0611250:intron | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | - | chr4_2:59373950-59373969 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | + | chr4_2:59374044-59374063 | Msa0611250:intron | 35.0% | |
| ! | AGAACTCGATTTTCATTCCT+GGG | - | chr4_2:59374107-59374126 | None:intergenic | 35.0% |
| CCACAAATGACGAATTGTTT+GGG | - | chr4_2:59374130-59374149 | None:intergenic | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | - | chr4_2:59374131-59374150 | None:intergenic | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | + | chr4_2:59374362-59374381 | Msa0611250:CDS | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | - | chr4_2:59374421-59374440 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | + | chr4_2:59374526-59374545 | Msa0611250:CDS | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | - | chr4_2:59374532-59374551 | None:intergenic | 35.0% |
| GTTGTACTAAACATATGTGG+TGG | + | chr4_2:59374574-59374593 | Msa0611250:CDS | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | - | chr4_2:59374695-59374714 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | - | chr4_2:59374741-59374760 | None:intergenic | 35.0% |
| GTGTTCAGACAGGTTTCATT+TGG | + | chr4_2:59373394-59373413 | Msa0611250:CDS | 40.0% | |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | - | chr4_2:59373503-59373522 | None:intergenic | 40.0% |
| CAGAAAGAAGGAATCAACGA+AGG | + | chr4_2:59373501-59373520 | Msa0611250:CDS | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | - | chr4_2:59373897-59373916 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | - | chr4_2:59373899-59373918 | None:intergenic | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | - | chr4_2:59373921-59373940 | None:intergenic | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | + | chr4_2:59373947-59373966 | Msa0611250:intron | 40.0% | |
| TGTTAACCTTCGAAGTTTGG+CGG | + | chr4_2:59374047-59374066 | Msa0611250:intron | 40.0% | |
| ! | TTCCTGGGTGGAACAATTTT+TGG | - | chr4_2:59374092-59374111 | None:intergenic | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | - | chr4_2:59374108-59374127 | None:intergenic | 40.0% |
| CCCAAACAATTCGTCATTTG+TGG | + | chr4_2:59374127-59374146 | Msa0611250:intron | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | - | chr4_2:59374284-59374303 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | + | chr4_2:59374361-59374380 | Msa0611250:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | - | chr4_2:59374422-59374441 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | + | chr4_2:59374433-59374452 | Msa0611250:CDS | 40.0% |
| ATTTGTGCAACTAAGAAGCC+TGG | + | chr4_2:59374613-59374632 | Msa0611250:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | + | chr4_2:59374636-59374655 | Msa0611250:CDS | 40.0% | |
| ACGTGACGCAAATTCAATGA+AGG | + | chr4_2:59375025-59375044 | Msa0611250:CDS | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | + | chr4_2:59375043-59375062 | Msa0611250:CDS | 40.0% | |
| GTGTTCAGACAGGTTTCATT+TGG | + | chr4_2:59373394-59373413 | Msa0611250:CDS | 40.0% | |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | - | chr4_2:59373503-59373522 | None:intergenic | 40.0% |
| CAGAAAGAAGGAATCAACGA+AGG | + | chr4_2:59373501-59373520 | Msa0611250:CDS | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | - | chr4_2:59373897-59373916 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | - | chr4_2:59373899-59373918 | None:intergenic | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | - | chr4_2:59373921-59373940 | None:intergenic | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | + | chr4_2:59373947-59373966 | Msa0611250:intron | 40.0% | |
| TGTTAACCTTCGAAGTTTGG+CGG | + | chr4_2:59374047-59374066 | Msa0611250:intron | 40.0% | |
| ! | TTCCTGGGTGGAACAATTTT+TGG | - | chr4_2:59374092-59374111 | None:intergenic | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | - | chr4_2:59374108-59374127 | None:intergenic | 40.0% |
| CCCAAACAATTCGTCATTTG+TGG | + | chr4_2:59374127-59374146 | Msa0611250:intron | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | - | chr4_2:59374284-59374303 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | + | chr4_2:59374361-59374380 | Msa0611250:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | - | chr4_2:59374422-59374441 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | + | chr4_2:59374433-59374452 | Msa0611250:CDS | 40.0% |
| ATTTGTGCAACTAAGAAGCC+TGG | + | chr4_2:59374613-59374632 | Msa0611250:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | + | chr4_2:59374636-59374655 | Msa0611250:CDS | 40.0% | |
| ACGTGACGCAAATTCAATGA+AGG | + | chr4_2:59375025-59375044 | Msa0611250:CDS | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | + | chr4_2:59375043-59375062 | Msa0611250:CDS | 40.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | + | chr4_2:59373384-59373403 | Msa0611250:CDS | 45.0% |
| AATCAACGAAGGAGATGCTC+CGG | + | chr4_2:59373512-59373531 | Msa0611250:CDS | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | - | chr4_2:59373554-59373573 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | - | chr4_2:59373703-59373722 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | + | chr4_2:59373704-59373723 | Msa0611250:CDS | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | + | chr4_2:59373880-59373899 | Msa0611250:intron | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | + | chr4_2:59373924-59373943 | Msa0611250:intron | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | - | chr4_2:59373945-59373964 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | + | chr4_2:59374087-59374106 | Msa0611250:intron | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | - | chr4_2:59374104-59374123 | None:intergenic | 45.0% |
| AGATGACTCACTCCCAAATG+GGG | - | chr4_2:59374377-59374396 | None:intergenic | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | - | chr4_2:59374378-59374397 | None:intergenic | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | - | chr4_2:59374379-59374398 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | + | chr4_2:59374392-59374411 | Msa0611250:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | + | chr4_2:59374410-59374429 | Msa0611250:CDS | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | + | chr4_2:59374411-59374430 | Msa0611250:CDS | 45.0% | |
| ! | GACCACAATTGCTTTGGTGT+TGG | + | chr4_2:59374642-59374661 | Msa0611250:CDS | 45.0% |
| CTCCAACACCAAAGCAATTG+TGG | - | chr4_2:59374647-59374666 | None:intergenic | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | + | chr4_2:59375063-59375082 | Msa0611250:CDS | 45.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | + | chr4_2:59373384-59373403 | Msa0611250:CDS | 45.0% |
| AATCAACGAAGGAGATGCTC+CGG | + | chr4_2:59373512-59373531 | Msa0611250:CDS | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | - | chr4_2:59373554-59373573 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | - | chr4_2:59373703-59373722 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | + | chr4_2:59373704-59373723 | Msa0611250:CDS | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | + | chr4_2:59373880-59373899 | Msa0611250:intron | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | + | chr4_2:59373924-59373943 | Msa0611250:intron | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | - | chr4_2:59373945-59373964 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | + | chr4_2:59374087-59374106 | Msa0611250:intron | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | - | chr4_2:59374104-59374123 | None:intergenic | 45.0% |
| AGATGACTCACTCCCAAATG+GGG | - | chr4_2:59374377-59374396 | None:intergenic | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | - | chr4_2:59374378-59374397 | None:intergenic | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | - | chr4_2:59374379-59374398 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | + | chr4_2:59374392-59374411 | Msa0611250:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | + | chr4_2:59374410-59374429 | Msa0611250:CDS | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | + | chr4_2:59374411-59374430 | Msa0611250:CDS | 45.0% | |
| ! | GACCACAATTGCTTTGGTGT+TGG | + | chr4_2:59374642-59374661 | Msa0611250:CDS | 45.0% |
| CTCCAACACCAAAGCAATTG+TGG | - | chr4_2:59374647-59374666 | None:intergenic | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | + | chr4_2:59375063-59375082 | Msa0611250:CDS | 45.0% | |
| GAATTTGGGAGATCACCCCA+TGG | - | chr4_2:59373429-59373448 | None:intergenic | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | - | chr4_2:59373534-59373553 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAAC+CGG | + | chr4_2:59373532-59373551 | Msa0611250:CDS | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | + | chr4_2:59373533-59373552 | Msa0611250:CDS | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | + | chr4_2:59373534-59373553 | Msa0611250:CDS | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | - | chr4_2:59373695-59373714 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | - | chr4_2:59374634-59374653 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | + | chr4_2:59375047-59375066 | Msa0611250:CDS | 50.0% | |
| GAATTTGGGAGATCACCCCA+TGG | - | chr4_2:59373429-59373448 | None:intergenic | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | - | chr4_2:59373534-59373553 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAAC+CGG | + | chr4_2:59373532-59373551 | Msa0611250:CDS | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | + | chr4_2:59373533-59373552 | Msa0611250:CDS | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | + | chr4_2:59373534-59373553 | Msa0611250:CDS | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | - | chr4_2:59373695-59373714 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | - | chr4_2:59374634-59374653 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | + | chr4_2:59375047-59375066 | Msa0611250:CDS | 50.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | + | chr4_2:59373537-59373556 | Msa0611250:CDS | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | + | chr4_2:59373538-59373557 | Msa0611250:CDS | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | + | chr4_2:59373539-59373558 | Msa0611250:CDS | 55.0% | |
| ACCTTCGAAGTTTGGCGGTG+AGG | + | chr4_2:59374052-59374071 | Msa0611250:intron | 55.0% | |
| ACCTCACCGCCAAACTTCGA+AGG | - | chr4_2:59374056-59374075 | None:intergenic | 55.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | + | chr4_2:59373537-59373556 | Msa0611250:CDS | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | + | chr4_2:59373538-59373557 | Msa0611250:CDS | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | + | chr4_2:59373539-59373558 | Msa0611250:CDS | 55.0% | |
| ACCTTCGAAGTTTGGCGGTG+AGG | + | chr4_2:59374052-59374071 | Msa0611250:intron | 55.0% | |
| ACCTCACCGCCAAACTTCGA+AGG | - | chr4_2:59374056-59374075 | None:intergenic | 55.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | + | chr4_2:59373517-59373536 | Msa0611250:CDS | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | - | chr4_2:59373932-59373951 | None:intergenic | 60.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | + | chr4_2:59373517-59373536 | Msa0611250:CDS | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | - | chr4_2:59373932-59373951 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 59373366 | 59375094 | 59373366 | ID=Msa0611250;Name=Msa0611250 |
| chr4_2 | mRNA | 59373366 | 59375094 | 59373366 | ID=Msa0611250-mRNA-1;Parent=Msa0611250;Name=Msa0611250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|305 |
| chr4_2 | exon | 59373366 | 59373725 | 59373366 | ID=Msa0611250-mRNA-1:exon:15716;Parent=Msa0611250-mRNA-1 |
| chr4_2 | exon | 59374268 | 59374741 | 59374268 | ID=Msa0611250-mRNA-1:exon:15717;Parent=Msa0611250-mRNA-1 |
| chr4_2 | exon | 59375011 | 59375094 | 59375011 | ID=Msa0611250-mRNA-1:exon:15718;Parent=Msa0611250-mRNA-1 |
| chr4_2 | CDS | 59373366 | 59373725 | 59373366 | ID=Msa0611250-mRNA-1:cds;Parent=Msa0611250-mRNA-1 |
| chr4_2 | CDS | 59374268 | 59374741 | 59374268 | ID=Msa0611250-mRNA-1:cds;Parent=Msa0611250-mRNA-1 |
| chr4_2 | CDS | 59375011 | 59375094 | 59375011 | ID=Msa0611250-mRNA-1:cds;Parent=Msa0611250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
