Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694010 | XP_003607934.1 | 94.098 | 305 | 17 | 1 | 1 | 305 | 1 | 304 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694010 | sp|Q9FXA3|BH095_ARATH | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 8.43e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694010 | G7JK21 | 94.098 | 305 | 17 | 1 | 1 | 305 | 1 | 304 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0694010 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611170 | Msa0694010 | 0.863644 | 2.148333e-64 | -8.615850e-47 |
| Msa0611250 | Msa0694010 | 0.845852 | 3.136385e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694010 | MtrunA17_Chr4g0044621 | 89.869 | 306 | 29 | 2 | 1 | 305 | 1 | 305 | 0.0 | 509 |
| Msa0694010 | MtrunA17_Chr4g0044611 | 93.548 | 279 | 17 | 1 | 1 | 279 | 1 | 278 | 1.72e-177 | 492 |
| Msa0694010 | MtrunA17_Chr4g0042511 | 43.214 | 280 | 121 | 7 | 1 | 279 | 1 | 243 | 4.18e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694010 | AT1G49770.1 | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 8.57e-43 | 149 |
Find 63 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTGATTCCTTCTTTC+TGG | 0.071265 | 4_4:-63253926 | None:intergenic |
| TCACCTAAATTATCAGAATT+TGG | 0.105182 | 4_4:-63253867 | None:intergenic |
| TGAAAATTTCTACATGATTA+TGG | 0.218947 | 4_4:+63255142 | Msa0694010:CDS |
| CTCCCAAATTCTGATAATTT+AGG | 0.240479 | 4_4:+63253864 | Msa0694010:CDS |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.247562 | 4_4:+63254130 | Msa0694010:CDS |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4_4:-63254847 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.303231 | 4_4:-63253918 | None:intergenic |
| CACCTAAATTATCAGAATTT+GGG | 0.327226 | 4_4:-63253866 | None:intergenic |
| AAATGAATTTATACCTTAGA+AGG | 0.331818 | 4_4:-63254143 | None:intergenic |
| CTCAAATGTGTATCCCCATT+TGG | 0.335851 | 4_4:+63254789 | Msa0694010:CDS |
| AAACCTACTTGTTGCATTTG+AGG | 0.351914 | 4_4:-63254957 | None:intergenic |
| GTGTTCAGACAGGTTTCATT+TGG | 0.354346 | 4_4:+63253820 | Msa0694010:CDS |
| TATACCTTAGAAGGAAGTTC+AGG | 0.398193 | 4_4:-63254134 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.410651 | 4_4:+63255064 | Msa0694010:CDS |
| TCAAATGTGTATCCCCATTT+GGG | 0.412830 | 4_4:+63254790 | Msa0694010:CDS |
| CGGTTTCTCTTCTTCCTCAC+CGG | 0.413966 | 4_4:-63253957 | None:intergenic |
| ATTGAAAATGCATTATTTGA+AGG | 0.414433 | 4_4:-63254933 | None:intergenic |
| TGTTCAGACAGGTTTCATTT+GGG | 0.442568 | 4_4:+63253821 | Msa0694010:CDS |
| CGGTGAGGAAGAAGAGAAAC+CGG | 0.442669 | 4_4:+63253958 | Msa0694010:CDS |
| CAGATGACTCACTCCCAAAT+GGG | 0.455516 | 4_4:-63254803 | None:intergenic |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4_4:+63254081 | Msa0694010:CDS |
| ACAGATGACTCACTCCCAAA+TGG | 0.463724 | 4_4:-63254804 | None:intergenic |
| TTGAAAAGAAGAAGCAAGAA+AGG | 0.480003 | 4_4:+63254766 | Msa0694010:CDS |
| GAAACATACAAGCATGCGGC+TGG | 0.489565 | 4_4:+63255472 | Msa0694010:CDS |
| CATGATCAAGGTGTTCAGAC+AGG | 0.491804 | 4_4:+63253810 | Msa0694010:CDS |
| CTCCAACACCAAAGCAATTG+TGG | 0.500537 | 4_4:-63255072 | None:intergenic |
| CATTTGGGAAAATCATCCAT+GGG | 0.506047 | 4_4:+63253836 | Msa0694010:CDS |
| TCATTTGGGAAAATCATCCA+TGG | 0.517340 | 4_4:+63253835 | Msa0694010:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4_4:-63254846 | None:intergenic |
| GACCACAATTGCTTTGGTGT+TGG | 0.522135 | 4_4:+63255070 | Msa0694010:CDS |
| GAAGAAGAGAAACCGGGGTG+GGG | 0.528579 | 4_4:+63253965 | Msa0694010:CDS |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4_4:+63254838 | Msa0694010:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4_4:+63255041 | Msa0694010:CDS |
| CTTCATTGCTGCATCTACAA+TGG | 0.548628 | 4_4:-63254709 | None:intergenic |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4_4:+63254861 | Msa0694010:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4_4:-63254118 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4_4:-63254126 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4_4:+63254066 | Msa0694010:CDS |
| ATTTGCATTGCACATGATGT+TGG | 0.560264 | 4_4:-63255120 | None:intergenic |
| GGAAGAAGAGAAACCGGGGT+GGG | 0.561203 | 4_4:+63253964 | Msa0694010:CDS |
| AATCAACGAAGGAGATGCTC+CGG | 0.562362 | 4_4:+63253938 | Msa0694010:CDS |
| ACGTGACGCAAATTCAATGA+AGG | 0.564753 | 4_4:+63255450 | Msa0694010:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4_4:+63253915 | Msa0694010:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4_4:-63255059 | None:intergenic |
| ATACCTCAAATGCAACAAGT+AGG | 0.573192 | 4_4:+63254954 | Msa0694010:CDS |
| GGTGAGGAAGAAGAGAAACC+GGG | 0.579068 | 4_4:+63253959 | Msa0694010:CDS |
| CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4_4:-63254886 | None:intergenic |
| ATGAGTGTAGATCATGATCA+AGG | 0.591815 | 4_4:+63253798 | Msa0694010:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.598595 | 4_4:-63253796 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4_4:+63254839 | Msa0694010:CDS |
| AATGTTGTACTAAACATATG+TGG | 0.641101 | 4_4:+63254999 | Msa0694010:CDS |
| TTCTAATTACAACCCCACCC+CGG | 0.641970 | 4_4:-63253977 | None:intergenic |
| CAGAAAGAAGGAATCAACGA+AGG | 0.651154 | 4_4:+63253927 | Msa0694010:CDS |
| AGATGACTCACTCCCAAATG+GGG | 0.669367 | 4_4:-63254802 | None:intergenic |
| AGGAAGAAGAGAAACCGGGG+TGG | 0.676084 | 4_4:+63253963 | Msa0694010:CDS |
| GAAGGAAACATACAAGCATG+CGG | 0.683731 | 4_4:+63255468 | Msa0694010:CDS |
| CGGCTGGAGAAATTATGATG+TGG | 0.687301 | 4_4:+63255488 | Msa0694010:CDS |
| ACGAAGGAGATGCTCCGGTG+AGG | 0.689033 | 4_4:+63253943 | Msa0694010:CDS |
| ATTTGGGAAAATCATCCATG+GGG | 0.693011 | 4_4:+63253837 | Msa0694010:CDS |
| GAATTTGGGAGATCACCCCA+TGG | 0.708355 | 4_4:-63253852 | None:intergenic |
| GTGAGGAAGAAGAGAAACCG+GGG | 0.718521 | 4_4:+63253960 | Msa0694010:CDS |
| GTTGTACTAAACATATGTGG+TGG | 0.748360 | 4_4:+63255002 | Msa0694010:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4_4:+63254820 | Msa0694010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTATATTTTAC+AGG | + | chr4_4:63254674-63254693 | Msa0694010:intron | 10.0% |
| !!! | ATTTGATTTTTATATTTTAC+AGG | + | chr4_4:63254674-63254693 | Msa0694010:intron | 10.0% |
| !! | AATATAACAAAATGATAAAG+AGG | - | chr4_4:63255193-63255212 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | + | chr4_4:63255255-63255274 | Msa0694010:intron | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | - | chr4_4:63255348-63255367 | None:intergenic | 15.0% |
| !! | AATATAACAAAATGATAAAG+AGG | - | chr4_4:63255193-63255212 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | + | chr4_4:63255255-63255274 | Msa0694010:intron | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | - | chr4_4:63255348-63255367 | None:intergenic | 15.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | - | chr4_4:63254146-63254165 | None:intergenic | 20.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | - | chr4_4:63254249-63254268 | None:intergenic | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | - | chr4_4:63254250-63254269 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | - | chr4_4:63254433-63254452 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | + | chr4_4:63254737-63254756 | Msa0694010:CDS | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | - | chr4_4:63254889-63254908 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | - | chr4_4:63254936-63254955 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | + | chr4_4:63255142-63255161 | Msa0694010:CDS | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | - | chr4_4:63255286-63255305 | None:intergenic | 20.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | - | chr4_4:63254146-63254165 | None:intergenic | 20.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | - | chr4_4:63254249-63254268 | None:intergenic | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | - | chr4_4:63254250-63254269 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | - | chr4_4:63254433-63254452 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | + | chr4_4:63254737-63254756 | Msa0694010:CDS | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | - | chr4_4:63254889-63254908 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | - | chr4_4:63254936-63254955 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | + | chr4_4:63255142-63255161 | Msa0694010:CDS | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | - | chr4_4:63255286-63255305 | None:intergenic | 20.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | - | chr4_4:63253869-63253888 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | - | chr4_4:63253870-63253889 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | + | chr4_4:63254608-63254627 | Msa0694010:intron | 25.0% |
| ! | AATGTTGTACTAAACATATG+TGG | + | chr4_4:63254999-63255018 | Msa0694010:CDS | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | - | chr4_4:63255281-63255300 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | + | chr4_4:63255414-63255433 | Msa0694010:intron | 25.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | - | chr4_4:63253869-63253888 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | - | chr4_4:63253870-63253889 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | + | chr4_4:63254608-63254627 | Msa0694010:intron | 25.0% |
| ! | AATGTTGTACTAAACATATG+TGG | + | chr4_4:63254999-63255018 | Msa0694010:CDS | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | - | chr4_4:63255281-63255300 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | + | chr4_4:63255414-63255433 | Msa0694010:intron | 25.0% |
| CTCCCAAATTCTGATAATTT+AGG | + | chr4_4:63253864-63253883 | Msa0694010:CDS | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | + | chr4_4:63254066-63254085 | Msa0694010:CDS | 30.0% |
| TCCAAGTTTGACATTGTATT+CGG | - | chr4_4:63254379-63254398 | None:intergenic | 30.0% | |
| !! | AAACATCTTCATTAGTCTTG+AGG | - | chr4_4:63254653-63254672 | None:intergenic | 30.0% |
| TTGAAAAGAAGAAGCAAGAA+AGG | + | chr4_4:63254766-63254785 | Msa0694010:CDS | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | + | chr4_4:63254967-63254986 | Msa0694010:CDS | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | - | chr4_4:63255168-63255187 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | - | chr4_4:63255185-63255204 | None:intergenic | 30.0% | |
| CTCCCAAATTCTGATAATTT+AGG | + | chr4_4:63253864-63253883 | Msa0694010:CDS | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | + | chr4_4:63254066-63254085 | Msa0694010:CDS | 30.0% |
| TCCAAGTTTGACATTGTATT+CGG | - | chr4_4:63254379-63254398 | None:intergenic | 30.0% | |
| !! | AAACATCTTCATTAGTCTTG+AGG | - | chr4_4:63254653-63254672 | None:intergenic | 30.0% |
| TTGAAAAGAAGAAGCAAGAA+AGG | + | chr4_4:63254766-63254785 | Msa0694010:CDS | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | + | chr4_4:63254967-63254986 | Msa0694010:CDS | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | - | chr4_4:63255168-63255187 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | - | chr4_4:63255185-63255204 | None:intergenic | 30.0% | |
| TTGATCATGATCTACACTCA+TGG | - | chr4_4:63253799-63253818 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | + | chr4_4:63253798-63253817 | Msa0694010:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | + | chr4_4:63253821-63253840 | Msa0694010:CDS | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | + | chr4_4:63253835-63253854 | Msa0694010:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | + | chr4_4:63253836-63253855 | Msa0694010:CDS | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | + | chr4_4:63253837-63253856 | Msa0694010:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | + | chr4_4:63253915-63253934 | Msa0694010:CDS | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | - | chr4_4:63253921-63253940 | None:intergenic | 35.0% |
| GAGAAAGGAGAAAGAAAATG+AGG | + | chr4_4:63254081-63254100 | Msa0694010:CDS | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | - | chr4_4:63254137-63254156 | None:intergenic | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | - | chr4_4:63254326-63254345 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | + | chr4_4:63254345-63254364 | Msa0694010:intron | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | + | chr4_4:63254346-63254365 | Msa0694010:intron | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | - | chr4_4:63254378-63254397 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | + | chr4_4:63254472-63254491 | Msa0694010:intron | 35.0% | |
| ! | AGAACTCGATTTTCATTCCT+GGG | - | chr4_4:63254535-63254554 | None:intergenic | 35.0% |
| CCACAAATGACGAATTGTTT+GGG | - | chr4_4:63254558-63254577 | None:intergenic | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | - | chr4_4:63254559-63254578 | None:intergenic | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | + | chr4_4:63254790-63254809 | Msa0694010:CDS | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | - | chr4_4:63254849-63254868 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | + | chr4_4:63254954-63254973 | Msa0694010:CDS | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | - | chr4_4:63254960-63254979 | None:intergenic | 35.0% |
| GTTGTACTAAACATATGTGG+TGG | + | chr4_4:63255002-63255021 | Msa0694010:CDS | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | - | chr4_4:63255123-63255142 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | - | chr4_4:63255169-63255188 | None:intergenic | 35.0% |
| TTGATCATGATCTACACTCA+TGG | - | chr4_4:63253799-63253818 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | + | chr4_4:63253798-63253817 | Msa0694010:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | + | chr4_4:63253821-63253840 | Msa0694010:CDS | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | + | chr4_4:63253835-63253854 | Msa0694010:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | + | chr4_4:63253836-63253855 | Msa0694010:CDS | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | + | chr4_4:63253837-63253856 | Msa0694010:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | + | chr4_4:63253915-63253934 | Msa0694010:CDS | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | - | chr4_4:63253921-63253940 | None:intergenic | 35.0% |
| GAGAAAGGAGAAAGAAAATG+AGG | + | chr4_4:63254081-63254100 | Msa0694010:CDS | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | - | chr4_4:63254137-63254156 | None:intergenic | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | - | chr4_4:63254326-63254345 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | + | chr4_4:63254345-63254364 | Msa0694010:intron | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | + | chr4_4:63254346-63254365 | Msa0694010:intron | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | - | chr4_4:63254378-63254397 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | + | chr4_4:63254472-63254491 | Msa0694010:intron | 35.0% | |
| ! | AGAACTCGATTTTCATTCCT+GGG | - | chr4_4:63254535-63254554 | None:intergenic | 35.0% |
| CCACAAATGACGAATTGTTT+GGG | - | chr4_4:63254558-63254577 | None:intergenic | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | - | chr4_4:63254559-63254578 | None:intergenic | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | + | chr4_4:63254790-63254809 | Msa0694010:CDS | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | - | chr4_4:63254849-63254868 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | + | chr4_4:63254954-63254973 | Msa0694010:CDS | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | - | chr4_4:63254960-63254979 | None:intergenic | 35.0% |
| GTTGTACTAAACATATGTGG+TGG | + | chr4_4:63255002-63255021 | Msa0694010:CDS | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | - | chr4_4:63255123-63255142 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | - | chr4_4:63255169-63255188 | None:intergenic | 35.0% |
| GTGTTCAGACAGGTTTCATT+TGG | + | chr4_4:63253820-63253839 | Msa0694010:CDS | 40.0% | |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | - | chr4_4:63253929-63253948 | None:intergenic | 40.0% |
| CAGAAAGAAGGAATCAACGA+AGG | + | chr4_4:63253927-63253946 | Msa0694010:CDS | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | - | chr4_4:63254325-63254344 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | - | chr4_4:63254327-63254346 | None:intergenic | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | - | chr4_4:63254349-63254368 | None:intergenic | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | + | chr4_4:63254375-63254394 | Msa0694010:intron | 40.0% | |
| TGTTAACCTTCGAAGTTTGG+CGG | + | chr4_4:63254475-63254494 | Msa0694010:intron | 40.0% | |
| ! | TTCCTGGGTGGAACAATTTT+TGG | - | chr4_4:63254520-63254539 | None:intergenic | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | - | chr4_4:63254536-63254555 | None:intergenic | 40.0% |
| CCCAAACAATTCGTCATTTG+TGG | + | chr4_4:63254555-63254574 | Msa0694010:intron | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | - | chr4_4:63254712-63254731 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | + | chr4_4:63254789-63254808 | Msa0694010:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | - | chr4_4:63254850-63254869 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | + | chr4_4:63254861-63254880 | Msa0694010:CDS | 40.0% |
| ATTTGTGCAACTAAGAAGCC+TGG | + | chr4_4:63255041-63255060 | Msa0694010:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | + | chr4_4:63255064-63255083 | Msa0694010:CDS | 40.0% | |
| ACGTGACGCAAATTCAATGA+AGG | + | chr4_4:63255450-63255469 | Msa0694010:CDS | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | + | chr4_4:63255468-63255487 | Msa0694010:CDS | 40.0% | |
| GTGTTCAGACAGGTTTCATT+TGG | + | chr4_4:63253820-63253839 | Msa0694010:CDS | 40.0% | |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | - | chr4_4:63253929-63253948 | None:intergenic | 40.0% |
| CAGAAAGAAGGAATCAACGA+AGG | + | chr4_4:63253927-63253946 | Msa0694010:CDS | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | - | chr4_4:63254325-63254344 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | - | chr4_4:63254327-63254346 | None:intergenic | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | - | chr4_4:63254349-63254368 | None:intergenic | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | + | chr4_4:63254375-63254394 | Msa0694010:intron | 40.0% | |
| TGTTAACCTTCGAAGTTTGG+CGG | + | chr4_4:63254475-63254494 | Msa0694010:intron | 40.0% | |
| ! | TTCCTGGGTGGAACAATTTT+TGG | - | chr4_4:63254520-63254539 | None:intergenic | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | - | chr4_4:63254536-63254555 | None:intergenic | 40.0% |
| CCCAAACAATTCGTCATTTG+TGG | + | chr4_4:63254555-63254574 | Msa0694010:intron | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | - | chr4_4:63254712-63254731 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | + | chr4_4:63254789-63254808 | Msa0694010:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | - | chr4_4:63254850-63254869 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | + | chr4_4:63254861-63254880 | Msa0694010:CDS | 40.0% |
| ATTTGTGCAACTAAGAAGCC+TGG | + | chr4_4:63255041-63255060 | Msa0694010:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | + | chr4_4:63255064-63255083 | Msa0694010:CDS | 40.0% | |
| ACGTGACGCAAATTCAATGA+AGG | + | chr4_4:63255450-63255469 | Msa0694010:CDS | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | + | chr4_4:63255468-63255487 | Msa0694010:CDS | 40.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | + | chr4_4:63253810-63253829 | Msa0694010:CDS | 45.0% |
| AATCAACGAAGGAGATGCTC+CGG | + | chr4_4:63253938-63253957 | Msa0694010:CDS | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | - | chr4_4:63253980-63253999 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | - | chr4_4:63254129-63254148 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | + | chr4_4:63254130-63254149 | Msa0694010:CDS | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | + | chr4_4:63254308-63254327 | Msa0694010:intron | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | + | chr4_4:63254352-63254371 | Msa0694010:intron | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | - | chr4_4:63254373-63254392 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | + | chr4_4:63254515-63254534 | Msa0694010:intron | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | - | chr4_4:63254532-63254551 | None:intergenic | 45.0% |
| AGATGACTCACTCCCAAATG+GGG | - | chr4_4:63254805-63254824 | None:intergenic | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | - | chr4_4:63254806-63254825 | None:intergenic | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | - | chr4_4:63254807-63254826 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | + | chr4_4:63254820-63254839 | Msa0694010:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | + | chr4_4:63254838-63254857 | Msa0694010:CDS | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | + | chr4_4:63254839-63254858 | Msa0694010:CDS | 45.0% | |
| ! | GACCACAATTGCTTTGGTGT+TGG | + | chr4_4:63255070-63255089 | Msa0694010:CDS | 45.0% |
| CTCCAACACCAAAGCAATTG+TGG | - | chr4_4:63255075-63255094 | None:intergenic | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | + | chr4_4:63255488-63255507 | Msa0694010:CDS | 45.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | + | chr4_4:63253810-63253829 | Msa0694010:CDS | 45.0% |
| AATCAACGAAGGAGATGCTC+CGG | + | chr4_4:63253938-63253957 | Msa0694010:CDS | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | - | chr4_4:63253980-63253999 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | - | chr4_4:63254129-63254148 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | + | chr4_4:63254130-63254149 | Msa0694010:CDS | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | + | chr4_4:63254308-63254327 | Msa0694010:intron | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | + | chr4_4:63254352-63254371 | Msa0694010:intron | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | - | chr4_4:63254373-63254392 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | + | chr4_4:63254515-63254534 | Msa0694010:intron | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | - | chr4_4:63254532-63254551 | None:intergenic | 45.0% |
| AGATGACTCACTCCCAAATG+GGG | - | chr4_4:63254805-63254824 | None:intergenic | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | - | chr4_4:63254806-63254825 | None:intergenic | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | - | chr4_4:63254807-63254826 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | + | chr4_4:63254820-63254839 | Msa0694010:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | + | chr4_4:63254838-63254857 | Msa0694010:CDS | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | + | chr4_4:63254839-63254858 | Msa0694010:CDS | 45.0% | |
| ! | GACCACAATTGCTTTGGTGT+TGG | + | chr4_4:63255070-63255089 | Msa0694010:CDS | 45.0% |
| CTCCAACACCAAAGCAATTG+TGG | - | chr4_4:63255075-63255094 | None:intergenic | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | + | chr4_4:63255488-63255507 | Msa0694010:CDS | 45.0% | |
| GAATTTGGGAGATCACCCCA+TGG | - | chr4_4:63253855-63253874 | None:intergenic | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | - | chr4_4:63253960-63253979 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAAC+CGG | + | chr4_4:63253958-63253977 | Msa0694010:CDS | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | + | chr4_4:63253959-63253978 | Msa0694010:CDS | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | + | chr4_4:63253960-63253979 | Msa0694010:CDS | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | - | chr4_4:63254121-63254140 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | - | chr4_4:63255062-63255081 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | + | chr4_4:63255472-63255491 | Msa0694010:CDS | 50.0% | |
| GAATTTGGGAGATCACCCCA+TGG | - | chr4_4:63253855-63253874 | None:intergenic | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | - | chr4_4:63253960-63253979 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAAC+CGG | + | chr4_4:63253958-63253977 | Msa0694010:CDS | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | + | chr4_4:63253959-63253978 | Msa0694010:CDS | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | + | chr4_4:63253960-63253979 | Msa0694010:CDS | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | - | chr4_4:63254121-63254140 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | - | chr4_4:63255062-63255081 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | + | chr4_4:63255472-63255491 | Msa0694010:CDS | 50.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | + | chr4_4:63253963-63253982 | Msa0694010:CDS | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | + | chr4_4:63253964-63253983 | Msa0694010:CDS | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | + | chr4_4:63253965-63253984 | Msa0694010:CDS | 55.0% | |
| ACCTTCGAAGTTTGGCGGTG+AGG | + | chr4_4:63254480-63254499 | Msa0694010:intron | 55.0% | |
| ACCTCACCGCCAAACTTCGA+AGG | - | chr4_4:63254484-63254503 | None:intergenic | 55.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | + | chr4_4:63253963-63253982 | Msa0694010:CDS | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | + | chr4_4:63253964-63253983 | Msa0694010:CDS | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | + | chr4_4:63253965-63253984 | Msa0694010:CDS | 55.0% | |
| ACCTTCGAAGTTTGGCGGTG+AGG | + | chr4_4:63254480-63254499 | Msa0694010:intron | 55.0% | |
| ACCTCACCGCCAAACTTCGA+AGG | - | chr4_4:63254484-63254503 | None:intergenic | 55.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | + | chr4_4:63253943-63253962 | Msa0694010:CDS | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | - | chr4_4:63254360-63254379 | None:intergenic | 60.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | + | chr4_4:63253943-63253962 | Msa0694010:CDS | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | - | chr4_4:63254360-63254379 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 63253792 | 63255519 | 63253792 | ID=Msa0694010;Name=Msa0694010 |
| chr4_4 | mRNA | 63253792 | 63255519 | 63253792 | ID=Msa0694010-mRNA-1;Parent=Msa0694010;Name=Msa0694010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|305 |
| chr4_4 | exon | 63253792 | 63254151 | 63253792 | ID=Msa0694010-mRNA-1:exon:17720;Parent=Msa0694010-mRNA-1 |
| chr4_4 | exon | 63254696 | 63255169 | 63254696 | ID=Msa0694010-mRNA-1:exon:17721;Parent=Msa0694010-mRNA-1 |
| chr4_4 | exon | 63255436 | 63255519 | 63255436 | ID=Msa0694010-mRNA-1:exon:17722;Parent=Msa0694010-mRNA-1 |
| chr4_4 | CDS | 63253792 | 63254151 | 63253792 | ID=Msa0694010-mRNA-1:cds;Parent=Msa0694010-mRNA-1 |
| chr4_4 | CDS | 63254696 | 63255169 | 63254696 | ID=Msa0694010-mRNA-1:cds;Parent=Msa0694010-mRNA-1 |
| chr4_4 | CDS | 63255436 | 63255519 | 63255436 | ID=Msa0694010-mRNA-1:cds;Parent=Msa0694010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
