AlfalfaGEDB | Msa0694010

M. sativa cultivar zhongmu-4 / Msa0694010

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694010	XP_003607934.1	94.098	305	17	1	1	305	1	304	0.0	545

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694010	sp\|Q9FXA3\|BH095_ARATH	33.333	324	160	8	12	305	9	306	8.43e-42	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694010	G7JK21	94.098	305	17	1	1	305	1	304	0.0	545

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TFs/TRs:

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Gene ID	Type	Classification
Msa0694010	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0611170	Msa0694010	0.863644	2.148333e-64	-8.615850e-47
Msa0611250	Msa0694010	0.845852	3.136385e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694010	MtrunA17_Chr4g0044621	89.869	306	29	2	1	305	1	305	0.0	509
Msa0694010	MtrunA17_Chr4g0044611	93.548	279	17	1	1	279	1	278	1.72e-177	492
Msa0694010	MtrunA17_Chr4g0042511	43.214	280	121	7	1	279	1	243	4.18e-50	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694010	AT1G49770.1	33.333	324	160	8	12	305	9	306	8.57e-43	149

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Find 63 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATTGAACCAGAAAGA+AGG	0.568529	4_4:+63253915	Msa0694010:CDS
AAACCTACTTGTTGCATTTG+AGG	0.351914	4_4:-63254957	None:intergenic
AAATGAATTTATACCTTAGA+AGG	0.331818	4_4:-63254143	None:intergenic
AATCAACGAAGGAGATGCTC+CGG	0.562362	4_4:+63253938	Msa0694010:CDS
AATGCTTCCCTTGATTCATA+GGG	0.521692	4_4:-63254846	None:intergenic
AATGTTGTACTAAACATATG+TGG	0.641101	4_4:+63254999	Msa0694010:CDS
ACAGATGACTCACTCCCAAA+TGG	0.463724	4_4:-63254804	None:intergenic
ACATATTGACTGAAAGAGAA+AGG	0.558067	4_4:+63254066	Msa0694010:CDS
ACGAAGGAGATGCTCCGGTG+AGG	0.689033	4_4:+63253943	Msa0694010:CDS
ACGTGACGCAAATTCAATGA+AGG	0.564753	4_4:+63255450	Msa0694010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCCCAAATTCTGATAATTT+AGG	+	chr4_4:63253864-63253883	Msa0694010:CDS	30.0%
TCCAAGTTTGACATTGTATT+CGG	-	chr4_4:63254379-63254398	None:intergenic	30.0%
TTGAAAAGAAGAAGCAAGAA+AGG	+	chr4_4:63254766-63254785	Msa0694010:CDS	30.0%
AAAATGATAAAGAGGAGAGA+AGG	-	chr4_4:63255185-63255204	None:intergenic	30.0%
CTCCCAAATTCTGATAATTT+AGG	+	chr4_4:63253864-63253883	Msa0694010:CDS	30.0%
TCCAAGTTTGACATTGTATT+CGG	-	chr4_4:63254379-63254398	None:intergenic	30.0%
TTGAAAAGAAGAAGCAAGAA+AGG	+	chr4_4:63254766-63254785	Msa0694010:CDS	30.0%
AAAATGATAAAGAGGAGAGA+AGG	-	chr4_4:63255185-63255204	None:intergenic	30.0%
TTGATCATGATCTACACTCA+TGG	-	chr4_4:63253799-63253818	None:intergenic	35.0%
ATGAGTGTAGATCATGATCA+AGG	+	chr4_4:63253798-63253817	Msa0694010:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	63253792	63255519	63253792	ID=Msa0694010;Name=Msa0694010
chr4_4	mRNA	63253792	63255519	63253792	ID=Msa0694010-mRNA-1;Parent=Msa0694010;Name=Msa0694010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|305
chr4_4	exon	63253792	63254151	63253792	ID=Msa0694010-mRNA-1:exon:17720;Parent=Msa0694010-mRNA-1
chr4_4	exon	63254696	63255169	63254696	ID=Msa0694010-mRNA-1:exon:17721;Parent=Msa0694010-mRNA-1
chr4_4	exon	63255436	63255519	63255436	ID=Msa0694010-mRNA-1:exon:17722;Parent=Msa0694010-mRNA-1
chr4_4	CDS	63253792	63254151	63253792	ID=Msa0694010-mRNA-1:cds;Parent=Msa0694010-mRNA-1
chr4_4	CDS	63254696	63255169	63254696	ID=Msa0694010-mRNA-1:cds;Parent=Msa0694010-mRNA-1
chr4_4	CDS	63255436	63255519	63255436	ID=Msa0694010-mRNA-1:cds;Parent=Msa0694010-mRNA-1

Gene Sequence

>Msa0694010

ATGGCCATGAGTGTAGATCATGATCAAGGTGTTCAGACAGGTTTCATTTGGGAAAATCATCCATGGGGTGATCTCCCAAATTCTGATAATTTAGGTGAGAGTAGCAAAAAAAGAATAGACACAAAACCATTGAACCAGAAAGAAGGAATCAACGAAGGAGATGCTCCGGTGAGGAAGAAGAGAAACCGGGGTGGGGTTGTAATTAGAAGTGAGAATAATATTACAACTGATGAAGAAAAAGATAGAAAGTATCGTGATTTTGATCATGAAATGCACATATTGACTGAAAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGATAGCCTTCATGCCTTGCTTCCTGAACTTCCTTCTAAGGCTGATAAATCAACCATTGTAGATGCAGCAATGAAGCACATTAAAAATCTGCAAGAAATTAAGGAAAAGCTTGAAAAGAAGAAGCAAGAAAGGCTCAAATGTGTATCCCCATTTGGGAGTGAGTCATCTGTGATCAACTCACAGTGGCATCCCTATGAATCAAGGGAAGCATTCTTAGCTGATCAAGGATCCTCAAGTTATAATAATAACTTGTCTAGCGCAACTGTAACTTCAAATCCTTCAAATAATGCATTTTCAATACCTCAAATGCAACAAGTAGGTTTTCAAACATGGTCTTCTCAAAATGTTGTACTAAACATATGTGGTGGTGAAGCACAATTTTGCATTTGTGCAACTAAGAAGCCTGGTCTCTTGACCACAATTGCTTTGGTGTTGGAGAAACATAAGATTGATGTTATTTCTGCCAACATCATGTGCAATGCAAATGAAAATTTCTACATGATTATGGCCCATGCAAAACAAGCTTCACGTGACGCAAATTCAATGAAGGAAACATACAAGCATGCGGCTGGAGAAATTATGATGTGGATCGCTTAG

Protein sequence

>Msa0694010

MAMSVDHDQGVQTGFIWENHPWGDLPNSDNLGESSKKRIDTKPLNQKEGINEGDAPVRKKRNRGGVVIRSENNITTDEEKDRKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKADKSTIVDAAMKHIKNLQEIKEKLEKKKQERLKCVSPFGSESSVINSQWHPYESREAFLADQGSSSYNNNLSSATVTSNPSNNAFSIPQMQQVGFQTWSSQNVVLNICGGEAQFCICATKKPGLLTTIALVLEKHKIDVISANIMCNANENFYMIMAHAKQASRDANSMKETYKHAAGEIMMWIA*