Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613060 | XP_013457098.1 | 97.231 | 325 | 9 | 0 | 1 | 325 | 1 | 325 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613060 | sp|Q9C942|CSE_ARATH | 38.562 | 306 | 185 | 3 | 21 | 325 | 22 | 325 | 4.52e-71 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613060 | I3S4R2 | 97.231 | 325 | 9 | 0 | 1 | 325 | 1 | 325 | 0.0 | 659 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612930 | Msa0613060 | 0.813304 | 2.738566e-51 | -8.615850e-47 |
| Msa0613060 | Msa1173470 | 0.811252 | 7.684572e-51 | -8.615850e-47 |
| Msa0613060 | Msa1179770 | 0.805756 | 1.144482e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613060 | MtrunA17_Chr4g0047891 | 97.231 | 325 | 9 | 0 | 1 | 325 | 1 | 325 | 0.0 | 659 |
| Msa0613060 | MtrunA17_Chr1g0195501 | 45.035 | 282 | 154 | 1 | 43 | 324 | 12 | 292 | 1.51e-83 | 255 |
| Msa0613060 | MtrunA17_Chr7g0269371 | 44.444 | 279 | 153 | 1 | 43 | 321 | 12 | 288 | 4.16e-79 | 244 |
| Msa0613060 | MtrunA17_Chr1g0212901 | 44.086 | 279 | 155 | 1 | 47 | 325 | 18 | 295 | 1.81e-78 | 242 |
| Msa0613060 | MtrunA17_Chr6g0460121 | 40.351 | 285 | 169 | 1 | 37 | 321 | 15 | 298 | 2.64e-77 | 239 |
| Msa0613060 | MtrunA17_Chr4g0071671 | 39.935 | 308 | 182 | 3 | 19 | 325 | 11 | 316 | 7.36e-77 | 238 |
| Msa0613060 | MtrunA17_Chr1g0199771 | 41.967 | 305 | 158 | 8 | 25 | 320 | 18 | 312 | 1.11e-76 | 238 |
| Msa0613060 | MtrunA17_Chr6g0457581 | 41.091 | 275 | 161 | 1 | 47 | 321 | 62 | 335 | 3.51e-76 | 237 |
| Msa0613060 | MtrunA17_Chr7g0215451 | 40.727 | 275 | 162 | 1 | 47 | 321 | 63 | 336 | 6.92e-75 | 234 |
| Msa0613060 | MtrunA17_Chr1g0209741 | 39.568 | 278 | 168 | 0 | 47 | 324 | 101 | 378 | 6.08e-70 | 222 |
| Msa0613060 | MtrunA17_Chr5g0423541 | 38.489 | 278 | 171 | 0 | 47 | 324 | 115 | 392 | 7.15e-70 | 222 |
| Msa0613060 | MtrunA17_Chr6g0484431 | 38.182 | 220 | 134 | 2 | 44 | 262 | 63 | 281 | 3.12e-51 | 171 |
| Msa0613060 | MtrunA17_Chr6g0479331 | 36.972 | 284 | 165 | 9 | 43 | 323 | 118 | 390 | 7.02e-43 | 152 |
| Msa0613060 | MtrunA17_Chr3g0140391 | 34.694 | 294 | 162 | 11 | 41 | 323 | 97 | 371 | 1.01e-40 | 146 |
| Msa0613060 | MtrunA17_Chr6g0484421 | 42.373 | 59 | 34 | 0 | 263 | 321 | 1 | 59 | 1.38e-12 | 62.4 |
| Msa0613060 | MtrunA17_Chr1g0209761 | 39.726 | 73 | 44 | 0 | 251 | 323 | 7 | 79 | 5.71e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613060 | AT1G11090.1 | 68.750 | 304 | 95 | 0 | 21 | 324 | 12 | 315 | 1.27e-160 | 451 |
| Msa0613060 | AT5G16120.3 | 44.056 | 286 | 158 | 2 | 37 | 321 | 53 | 337 | 6.02e-81 | 250 |
| Msa0613060 | AT5G16120.1 | 44.056 | 286 | 158 | 2 | 37 | 321 | 53 | 337 | 6.02e-81 | 250 |
| Msa0613060 | AT5G16120.2 | 44.056 | 286 | 158 | 2 | 37 | 321 | 71 | 355 | 8.76e-81 | 250 |
| Msa0613060 | AT5G16120.4 | 44.056 | 286 | 158 | 2 | 37 | 321 | 85 | 369 | 1.49e-80 | 250 |
| Msa0613060 | AT3G62860.1 | 44.043 | 277 | 153 | 1 | 47 | 323 | 17 | 291 | 4.85e-80 | 247 |
| Msa0613060 | AT2G39420.1 | 44.014 | 284 | 158 | 1 | 40 | 323 | 12 | 294 | 2.54e-79 | 244 |
| Msa0613060 | AT2G47630.1 | 43.321 | 277 | 157 | 0 | 47 | 323 | 17 | 293 | 4.10e-79 | 245 |
| Msa0613060 | AT5G14980.1 | 40.064 | 312 | 182 | 4 | 15 | 325 | 10 | 317 | 1.19e-78 | 243 |
| Msa0613060 | AT3G55180.1 | 43.416 | 281 | 159 | 0 | 44 | 324 | 10 | 290 | 6.88e-76 | 236 |
| Msa0613060 | AT2G39410.2 | 43.310 | 284 | 160 | 1 | 40 | 323 | 12 | 294 | 8.10e-76 | 236 |
| Msa0613060 | AT5G19290.1 | 39.535 | 301 | 174 | 3 | 29 | 325 | 22 | 318 | 2.08e-75 | 235 |
| Msa0613060 | AT2G39400.1 | 42.857 | 280 | 159 | 1 | 45 | 324 | 11 | 289 | 3.82e-74 | 231 |
| Msa0613060 | AT1G52760.1 | 38.562 | 306 | 185 | 3 | 21 | 325 | 22 | 325 | 4.60e-72 | 226 |
| Msa0613060 | AT3G55190.1 | 41.727 | 278 | 160 | 2 | 47 | 323 | 19 | 295 | 1.39e-70 | 222 |
| Msa0613060 | AT3G62860.2 | 44.726 | 237 | 131 | 0 | 87 | 323 | 12 | 248 | 1.70e-68 | 216 |
| Msa0613060 | AT2G47630.2 | 43.320 | 247 | 140 | 0 | 77 | 323 | 2 | 248 | 1.40e-66 | 211 |
| Msa0613060 | AT2G47630.3 | 44.726 | 237 | 131 | 0 | 87 | 323 | 32 | 268 | 5.89e-66 | 211 |
| Msa0613060 | AT1G77420.1 | 38.095 | 273 | 169 | 0 | 51 | 323 | 106 | 378 | 4.92e-61 | 199 |
| Msa0613060 | AT1G73480.1 | 39.446 | 289 | 157 | 9 | 41 | 324 | 188 | 463 | 8.36e-50 | 172 |
| Msa0613060 | AT1G18360.1 | 37.847 | 288 | 164 | 8 | 41 | 324 | 106 | 382 | 3.42e-48 | 166 |
| Msa0613060 | AT2G39400.2 | 39.151 | 212 | 128 | 1 | 45 | 256 | 11 | 221 | 2.45e-45 | 155 |
| Msa0613060 | AT5G11650.1 | 34.471 | 293 | 164 | 10 | 41 | 323 | 104 | 378 | 2.59e-40 | 145 |
| Msa0613060 | AT2G39410.1 | 39.394 | 99 | 59 | 1 | 40 | 138 | 12 | 109 | 7.68e-19 | 81.3 |
| Msa0613060 | AT5G11650.2 | 30.288 | 208 | 120 | 9 | 41 | 238 | 104 | 296 | 2.32e-16 | 78.6 |
Find 73 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGTAGTATTCAGATTC+TGG | 0.142529 | 4_2:-61635765 | None:intergenic |
| GTGAAGAGGGTTAGGTTTCT+TGG | 0.206429 | 4_2:-61635825 | None:intergenic |
| CTACCATGCAACACAATAAA+AGG | 0.275261 | 4_2:-61636464 | None:intergenic |
| ATAGCACCTTGAAACCCTTT+TGG | 0.286890 | 4_2:-61636173 | None:intergenic |
| AAGAAGATTGAAGAAGCTTT+TGG | 0.317467 | 4_2:-61635716 | None:intergenic |
| GAGTGAAGATAAGAGTATTA+AGG | 0.332679 | 4_2:+61636541 | Msa0613060:CDS |
| CGTGGTGGGGTGGTAGGGTT+TGG | 0.335829 | 4_2:-61635861 | None:intergenic |
| AAAGTTAAAATCTGAGGAAT+TGG | 0.336870 | 4_2:-61636245 | None:intergenic |
| ATCTGAGGAATTGGCCATTT+GGG | 0.338207 | 4_2:-61636236 | None:intergenic |
| CCCATTTGAGCAAGGAAGAT+TGG | 0.341554 | 4_2:-61635945 | None:intergenic |
| ATGAATCCTTTGAGGTATAG+AGG | 0.357188 | 4_2:+61636362 | Msa0613060:CDS |
| TCCAATCTTCCTTGCTCAAA+TGG | 0.364325 | 4_2:+61635944 | Msa0613060:CDS |
| TGTTTCTCTCTTGATCTTCA+AGG | 0.369035 | 4_2:+61635975 | Msa0613060:CDS |
| CTTCTTCATACCCTTACTAC+TGG | 0.381849 | 4_2:+61635733 | Msa0613060:CDS |
| AGATCAGGTGTAGGAACAAT+AGG | 0.382799 | 4_2:-61636293 | None:intergenic |
| AAGAGTATTAAGGTGTTTGA+TGG | 0.389742 | 4_2:+61636551 | Msa0613060:CDS |
| TATAGAGGGAAACCTAGGTT+AGG | 0.390724 | 4_2:+61636377 | Msa0613060:CDS |
| ATGATCTTGTGAAGAGGGTT+AGG | 0.391175 | 4_2:-61635833 | None:intergenic |
| AATCTGAGGAATTGGCCATT+TGG | 0.392380 | 4_2:-61636237 | None:intergenic |
| AGGGTTTCAAGGTGCTATTT+TGG | 0.399644 | 4_2:+61636178 | Msa0613060:CDS |
| CCAATCTTCCTTGCTCAAAT+GGG | 0.405887 | 4_2:+61635945 | Msa0613060:CDS |
| TTGCTCAAATGAATCCTTTG+AGG | 0.411616 | 4_2:+61636354 | Msa0613060:CDS |
| AAGAAAGATTCAAACTTTGT+TGG | 0.421169 | 4_2:+61636083 | Msa0613060:CDS |
| AGAGCACGTGGTGGGGTGGT+AGG | 0.424495 | 4_2:-61635867 | None:intergenic |
| TTACTGATCCTGAGGTTAGT+AGG | 0.426605 | 4_2:+61636498 | Msa0613060:CDS |
| GCTGATCCAAAAGGGTTTCA+AGG | 0.426607 | 4_2:+61636167 | Msa0613060:CDS |
| GGGTTGTAGCCCCAGTAGTA+AGG | 0.428895 | 4_2:-61635744 | None:intergenic |
| ATGAGAATGTTGAAATTGTT+AGG | 0.429955 | 4_2:+61636606 | Msa0613060:CDS |
| GTTTGTAGTATTCAGATTCT+GGG | 0.435351 | 4_2:-61635764 | None:intergenic |
| CAAGGAAGATTGGAGTGGAT+TGG | 0.435441 | 4_2:-61635935 | None:intergenic |
| GGGAATTGTATGAAGAAGCT+AGG | 0.463498 | 4_2:+61636519 | Msa0613060:CDS |
| TATGTGTAAAATCTCTGATA+AGG | 0.464943 | 4_2:+61636208 | Msa0613060:CDS |
| GTAGGAACAATAGGCAAAGT+TGG | 0.473558 | 4_2:-61636284 | None:intergenic |
| CAAGGACATGGTCATTCTCA+AGG | 0.477582 | 4_2:+61635993 | Msa0613060:CDS |
| GAGCACGTGGTGGGGTGGTA+GGG | 0.481270 | 4_2:-61635866 | None:intergenic |
| TAGGTTTCTTGGTGTTGTGA+AGG | 0.494001 | 4_2:-61635814 | None:intergenic |
| ACAGACTTATACAAAAGATC+AGG | 0.503183 | 4_2:-61636308 | None:intergenic |
| TACTGATCCTGAGGTTAGTA+GGG | 0.510507 | 4_2:+61636499 | Msa0613060:CDS |
| TCTCTTGATCTTCAAGGACA+TGG | 0.518953 | 4_2:+61635981 | Msa0613060:CDS |
| TTATTATCAATGGAAGAAGA+AGG | 0.519984 | 4_2:+61635681 | None:intergenic |
| TTCTTCATACCCTTACTACT+GGG | 0.522282 | 4_2:+61635734 | Msa0613060:CDS |
| CTGATAAGGTTAGACCCAAA+TGG | 0.529049 | 4_2:+61636222 | Msa0613060:CDS |
| AGAGTATTAAGGTGTTTGAT+GGG | 0.547375 | 4_2:+61636552 | Msa0613060:CDS |
| ATCTTCATGATCCATGGCTA+TGG | 0.551295 | 4_2:+61635891 | Msa0613060:CDS |
| TACAATTCCCTACTAACCTC+AGG | 0.553697 | 4_2:-61636506 | None:intergenic |
| GCTATGGCAACGACATCTCA+TGG | 0.554178 | 4_2:+61635907 | Msa0613060:CDS |
| TAACCCTCTTCACAAGATCA+TGG | 0.557698 | 4_2:+61635835 | Msa0613060:CDS |
| TGAATCCTTTGAGGTATAGA+GGG | 0.558623 | 4_2:+61636363 | Msa0613060:CDS |
| TGTGAAAGTTGATCATAAGA+AGG | 0.559417 | 4_2:+61636328 | Msa0613060:CDS |
| ATAGAGGGAAACCTAGGTTA+GGG | 0.564456 | 4_2:+61636378 | Msa0613060:CDS |
| GCTCTCATCTTCATGATCCA+TGG | 0.570876 | 4_2:+61635885 | Msa0613060:CDS |
| AAGCCATGATCTTGTGAAGA+GGG | 0.575206 | 4_2:-61635838 | None:intergenic |
| GGTTGTAGCCCCAGTAGTAA+GGG | 0.579814 | 4_2:-61635743 | None:intergenic |
| GGTTTCCCTCTATACCTCAA+AGG | 0.583565 | 4_2:-61636368 | None:intergenic |
| AGAGACAATCTTGTACAAGA+AGG | 0.593843 | 4_2:-61636043 | None:intergenic |
| AGATGTCGTTGCCATAGCCA+TGG | 0.594829 | 4_2:-61635902 | None:intergenic |
| GAAGATTGGAGTGGATTGGA+AGG | 0.598909 | 4_2:-61635931 | None:intergenic |
| TTGAGCAAGGAAGATTGGAG+TGG | 0.603705 | 4_2:-61635940 | None:intergenic |
| TGAGGTATAGAGGGAAACCT+AGG | 0.603962 | 4_2:+61636372 | Msa0613060:CDS |
| TGATGTTGTTACTGATCCTG+AGG | 0.606341 | 4_2:+61636490 | Msa0613060:CDS |
| GAAGCCATGATCTTGTGAAG+AGG | 0.612962 | 4_2:-61635839 | None:intergenic |
| TGAAGATGAGAGCACGTGGT+GGG | 0.613453 | 4_2:-61635875 | None:intergenic |
| AAGCGAAACCCATTTGAGCA+AGG | 0.634300 | 4_2:-61635953 | None:intergenic |
| GAAACCTAGGTTAGGGACTG+TGG | 0.643259 | 4_2:+61636385 | Msa0613060:CDS |
| TGTACAAGAAGGTCAACGCT+AGG | 0.645731 | 4_2:-61636032 | None:intergenic |
| TTATATGGTGAATCAATGGG+TGG | 0.653291 | 4_2:+61636119 | Msa0613060:CDS |
| TCAACCACAGTCCCTAACCT+AGG | 0.653370 | 4_2:-61636389 | None:intergenic |
| GATGAGAGCACGTGGTGGGG+TGG | 0.655445 | 4_2:-61635871 | None:intergenic |
| TTATACAAAAGATCAGGTGT+AGG | 0.656762 | 4_2:-61636302 | None:intergenic |
| TCTTCATACCCTTACTACTG+GGG | 0.662115 | 4_2:+61635735 | Msa0613060:CDS |
| GAAGATGAGAGCACGTGGTG+GGG | 0.666350 | 4_2:-61635874 | None:intergenic |
| ATGAAGATGAGAGCACGTGG+TGG | 0.684343 | 4_2:-61635876 | None:intergenic |
| ATCATGAAGATGAGAGCACG+TGG | 0.766597 | 4_2:-61635879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATATGGTGAATCAA+TGG | + | chr4_2:61636115-61636134 | Msa0613060:CDS | 20.0% |
| !!! | TTTTTATATGGTGAATCAAT+GGG | + | chr4_2:61636116-61636135 | Msa0613060:CDS | 20.0% |
| !!! | TTTTTTATATGGTGAATCAA+TGG | + | chr4_2:61636115-61636134 | Msa0613060:CDS | 20.0% |
| !!! | TTTTTATATGGTGAATCAAT+GGG | + | chr4_2:61636116-61636135 | Msa0613060:CDS | 20.0% |
| ! | AAGAAAGATTCAAACTTTGT+TGG | + | chr4_2:61636083-61636102 | Msa0613060:CDS | 25.0% |
| ! | GATTCACCATATAAAAAACA+AGG | - | chr4_2:61636113-61636132 | None:intergenic | 25.0% |
| !! | TTATCAGAGATTTTACACAT+AGG | - | chr4_2:61636209-61636228 | None:intergenic | 25.0% |
| ! | TATGTGTAAAATCTCTGATA+AGG | + | chr4_2:61636208-61636227 | Msa0613060:CDS | 25.0% |
| ! | AAAGTTAAAATCTGAGGAAT+TGG | - | chr4_2:61636248-61636267 | None:intergenic | 25.0% |
| ! | GCTAAAAAAGTTAAAATCTG+AGG | - | chr4_2:61636254-61636273 | None:intergenic | 25.0% |
| ! | ATGAGAATGTTGAAATTGTT+AGG | + | chr4_2:61636606-61636625 | Msa0613060:CDS | 25.0% |
| ! | AAGAAAGATTCAAACTTTGT+TGG | + | chr4_2:61636083-61636102 | Msa0613060:CDS | 25.0% |
| ! | GATTCACCATATAAAAAACA+AGG | - | chr4_2:61636113-61636132 | None:intergenic | 25.0% |
| !! | TTATCAGAGATTTTACACAT+AGG | - | chr4_2:61636209-61636228 | None:intergenic | 25.0% |
| ! | TATGTGTAAAATCTCTGATA+AGG | + | chr4_2:61636208-61636227 | Msa0613060:CDS | 25.0% |
| ! | AAAGTTAAAATCTGAGGAAT+TGG | - | chr4_2:61636248-61636267 | None:intergenic | 25.0% |
| ! | GCTAAAAAAGTTAAAATCTG+AGG | - | chr4_2:61636254-61636273 | None:intergenic | 25.0% |
| ! | ATGAGAATGTTGAAATTGTT+AGG | + | chr4_2:61636606-61636625 | Msa0613060:CDS | 25.0% |
| ! | AAGAAGATTGAAGAAGCTTT+TGG | - | chr4_2:61635719-61635738 | None:intergenic | 30.0% |
| GTTTGTAGTATTCAGATTCT+GGG | - | chr4_2:61635767-61635786 | None:intergenic | 30.0% | |
| TGTTTGTAGTATTCAGATTC+TGG | - | chr4_2:61635768-61635787 | None:intergenic | 30.0% | |
| !!! | GGATTGCCTTGTTTTTTATA+TGG | + | chr4_2:61636104-61636123 | Msa0613060:CDS | 30.0% |
| ! | ATTCATTTTGCTGATCCAAA+AGG | + | chr4_2:61636158-61636177 | Msa0613060:CDS | 30.0% |
| ! | TTCATTTTGCTGATCCAAAA+GGG | + | chr4_2:61636159-61636178 | Msa0613060:CDS | 30.0% |
| TTATACAAAAGATCAGGTGT+AGG | - | chr4_2:61636305-61636324 | None:intergenic | 30.0% | |
| ACAGACTTATACAAAAGATC+AGG | - | chr4_2:61636311-61636330 | None:intergenic | 30.0% | |
| ! | TGTGAAAGTTGATCATAAGA+AGG | + | chr4_2:61636328-61636347 | Msa0613060:CDS | 30.0% |
| !! | GAGTGAAGATAAGAGTATTA+AGG | + | chr4_2:61636541-61636560 | Msa0613060:CDS | 30.0% |
| !! | AAGAGTATTAAGGTGTTTGA+TGG | + | chr4_2:61636551-61636570 | Msa0613060:CDS | 30.0% |
| ! | AGAGTATTAAGGTGTTTGAT+GGG | + | chr4_2:61636552-61636571 | Msa0613060:CDS | 30.0% |
| !! | ATGATGCATTCTTTGCTTTT+TGG | + | chr4_2:61636575-61636594 | Msa0613060:CDS | 30.0% |
| ! | TTAGGAATGATATTTTGCAG+TGG | + | chr4_2:61636624-61636643 | Msa0613060:CDS | 30.0% |
| ! | AAGAAGATTGAAGAAGCTTT+TGG | - | chr4_2:61635719-61635738 | None:intergenic | 30.0% |
| GTTTGTAGTATTCAGATTCT+GGG | - | chr4_2:61635767-61635786 | None:intergenic | 30.0% | |
| TGTTTGTAGTATTCAGATTC+TGG | - | chr4_2:61635768-61635787 | None:intergenic | 30.0% | |
| !!! | GGATTGCCTTGTTTTTTATA+TGG | + | chr4_2:61636104-61636123 | Msa0613060:CDS | 30.0% |
| ! | ATTCATTTTGCTGATCCAAA+AGG | + | chr4_2:61636158-61636177 | Msa0613060:CDS | 30.0% |
| ! | TTCATTTTGCTGATCCAAAA+GGG | + | chr4_2:61636159-61636178 | Msa0613060:CDS | 30.0% |
| TTATACAAAAGATCAGGTGT+AGG | - | chr4_2:61636305-61636324 | None:intergenic | 30.0% | |
| ACAGACTTATACAAAAGATC+AGG | - | chr4_2:61636311-61636330 | None:intergenic | 30.0% | |
| ! | TGTGAAAGTTGATCATAAGA+AGG | + | chr4_2:61636328-61636347 | Msa0613060:CDS | 30.0% |
| !! | GAGTGAAGATAAGAGTATTA+AGG | + | chr4_2:61636541-61636560 | Msa0613060:CDS | 30.0% |
| !! | AAGAGTATTAAGGTGTTTGA+TGG | + | chr4_2:61636551-61636570 | Msa0613060:CDS | 30.0% |
| ! | AGAGTATTAAGGTGTTTGAT+GGG | + | chr4_2:61636552-61636571 | Msa0613060:CDS | 30.0% |
| !! | ATGATGCATTCTTTGCTTTT+TGG | + | chr4_2:61636575-61636594 | Msa0613060:CDS | 30.0% |
| ! | TTAGGAATGATATTTTGCAG+TGG | + | chr4_2:61636624-61636643 | Msa0613060:CDS | 30.0% |
| TTCTTCATACCCTTACTACT+GGG | + | chr4_2:61635734-61635753 | Msa0613060:CDS | 35.0% | |
| !! | TGTTGTGAAGGTTGATTTTG+TGG | - | chr4_2:61635805-61635824 | None:intergenic | 35.0% |
| TGTTTCTCTCTTGATCTTCA+AGG | + | chr4_2:61635975-61635994 | Msa0613060:CDS | 35.0% | |
| AGAGACAATCTTGTACAAGA+AGG | - | chr4_2:61636046-61636065 | None:intergenic | 35.0% | |
| TTATATGGTGAATCAATGGG+TGG | + | chr4_2:61636119-61636138 | Msa0613060:CDS | 35.0% | |
| TTGCTCAAATGAATCCTTTG+AGG | + | chr4_2:61636354-61636373 | Msa0613060:CDS | 35.0% | |
| !! | ATGAATCCTTTGAGGTATAG+AGG | + | chr4_2:61636362-61636381 | Msa0613060:CDS | 35.0% |
| !! | TGAATCCTTTGAGGTATAGA+GGG | + | chr4_2:61636363-61636382 | Msa0613060:CDS | 35.0% |
| !! | GGGTTACTGATATTTTGAGT+AGG | + | chr4_2:61636420-61636439 | Msa0613060:CDS | 35.0% |
| ! | CTTCCTTTTATTGTGTTGCA+TGG | + | chr4_2:61636461-61636480 | Msa0613060:CDS | 35.0% |
| CTACCATGCAACACAATAAA+AGG | - | chr4_2:61636467-61636486 | None:intergenic | 35.0% | |
| TTCTTCATACCCTTACTACT+GGG | + | chr4_2:61635734-61635753 | Msa0613060:CDS | 35.0% | |
| !! | TGTTGTGAAGGTTGATTTTG+TGG | - | chr4_2:61635805-61635824 | None:intergenic | 35.0% |
| TGTTTCTCTCTTGATCTTCA+AGG | + | chr4_2:61635975-61635994 | Msa0613060:CDS | 35.0% | |
| AGAGACAATCTTGTACAAGA+AGG | - | chr4_2:61636046-61636065 | None:intergenic | 35.0% | |
| TTATATGGTGAATCAATGGG+TGG | + | chr4_2:61636119-61636138 | Msa0613060:CDS | 35.0% | |
| TTGCTCAAATGAATCCTTTG+AGG | + | chr4_2:61636354-61636373 | Msa0613060:CDS | 35.0% | |
| !! | ATGAATCCTTTGAGGTATAG+AGG | + | chr4_2:61636362-61636381 | Msa0613060:CDS | 35.0% |
| !! | TGAATCCTTTGAGGTATAGA+GGG | + | chr4_2:61636363-61636382 | Msa0613060:CDS | 35.0% |
| !! | GGGTTACTGATATTTTGAGT+AGG | + | chr4_2:61636420-61636439 | Msa0613060:CDS | 35.0% |
| ! | CTTCCTTTTATTGTGTTGCA+TGG | + | chr4_2:61636461-61636480 | Msa0613060:CDS | 35.0% |
| CTACCATGCAACACAATAAA+AGG | - | chr4_2:61636467-61636486 | None:intergenic | 35.0% | |
| CTTCTTCATACCCTTACTAC+TGG | + | chr4_2:61635733-61635752 | Msa0613060:CDS | 40.0% | |
| TCTTCATACCCTTACTACTG+GGG | + | chr4_2:61635735-61635754 | Msa0613060:CDS | 40.0% | |
| !! | TAGGTTTCTTGGTGTTGTGA+AGG | - | chr4_2:61635817-61635836 | None:intergenic | 40.0% |
| ATGATCTTGTGAAGAGGGTT+AGG | - | chr4_2:61635836-61635855 | None:intergenic | 40.0% | |
| TAACCCTCTTCACAAGATCA+TGG | + | chr4_2:61635835-61635854 | Msa0613060:CDS | 40.0% | |
| AAGCCATGATCTTGTGAAGA+GGG | - | chr4_2:61635841-61635860 | None:intergenic | 40.0% | |
| ATCTTCATGATCCATGGCTA+TGG | + | chr4_2:61635891-61635910 | Msa0613060:CDS | 40.0% | |
| TCCAATCTTCCTTGCTCAAA+TGG | + | chr4_2:61635944-61635963 | Msa0613060:CDS | 40.0% | |
| CCAATCTTCCTTGCTCAAAT+GGG | + | chr4_2:61635945-61635964 | Msa0613060:CDS | 40.0% | |
| TCTCTTGATCTTCAAGGACA+TGG | + | chr4_2:61635981-61636000 | Msa0613060:CDS | 40.0% | |
| ! | ATAGCACCTTGAAACCCTTT+TGG | - | chr4_2:61636176-61636195 | None:intergenic | 40.0% |
| !!! | AGGGTTTCAAGGTGCTATTT+TGG | + | chr4_2:61636178-61636197 | Msa0613060:CDS | 40.0% |
| CTGATAAGGTTAGACCCAAA+TGG | + | chr4_2:61636222-61636241 | Msa0613060:CDS | 40.0% | |
| ATCTGAGGAATTGGCCATTT+GGG | - | chr4_2:61636239-61636258 | None:intergenic | 40.0% | |
| AATCTGAGGAATTGGCCATT+TGG | - | chr4_2:61636240-61636259 | None:intergenic | 40.0% | |
| GTAGGAACAATAGGCAAAGT+TGG | - | chr4_2:61636287-61636306 | None:intergenic | 40.0% | |
| AGATCAGGTGTAGGAACAAT+AGG | - | chr4_2:61636296-61636315 | None:intergenic | 40.0% | |
| TATAGAGGGAAACCTAGGTT+AGG | + | chr4_2:61636377-61636396 | Msa0613060:CDS | 40.0% | |
| ATAGAGGGAAACCTAGGTTA+GGG | + | chr4_2:61636378-61636397 | Msa0613060:CDS | 40.0% | |
| TGATGTTGTTACTGATCCTG+AGG | + | chr4_2:61636490-61636509 | Msa0613060:CDS | 40.0% | |
| TTACTGATCCTGAGGTTAGT+AGG | + | chr4_2:61636498-61636517 | Msa0613060:CDS | 40.0% | |
| TACTGATCCTGAGGTTAGTA+GGG | + | chr4_2:61636499-61636518 | Msa0613060:CDS | 40.0% | |
| TACAATTCCCTACTAACCTC+AGG | - | chr4_2:61636509-61636528 | None:intergenic | 40.0% | |
| GGGAATTGTATGAAGAAGCT+AGG | + | chr4_2:61636519-61636538 | Msa0613060:CDS | 40.0% | |
| CTTCTTCATACCCTTACTAC+TGG | + | chr4_2:61635733-61635752 | Msa0613060:CDS | 40.0% | |
| TCTTCATACCCTTACTACTG+GGG | + | chr4_2:61635735-61635754 | Msa0613060:CDS | 40.0% | |
| !! | TAGGTTTCTTGGTGTTGTGA+AGG | - | chr4_2:61635817-61635836 | None:intergenic | 40.0% |
| ATGATCTTGTGAAGAGGGTT+AGG | - | chr4_2:61635836-61635855 | None:intergenic | 40.0% | |
| TAACCCTCTTCACAAGATCA+TGG | + | chr4_2:61635835-61635854 | Msa0613060:CDS | 40.0% | |
| AAGCCATGATCTTGTGAAGA+GGG | - | chr4_2:61635841-61635860 | None:intergenic | 40.0% | |
| ATCTTCATGATCCATGGCTA+TGG | + | chr4_2:61635891-61635910 | Msa0613060:CDS | 40.0% | |
| TCCAATCTTCCTTGCTCAAA+TGG | + | chr4_2:61635944-61635963 | Msa0613060:CDS | 40.0% | |
| CCAATCTTCCTTGCTCAAAT+GGG | + | chr4_2:61635945-61635964 | Msa0613060:CDS | 40.0% | |
| TCTCTTGATCTTCAAGGACA+TGG | + | chr4_2:61635981-61636000 | Msa0613060:CDS | 40.0% | |
| ! | ATAGCACCTTGAAACCCTTT+TGG | - | chr4_2:61636176-61636195 | None:intergenic | 40.0% |
| !!! | AGGGTTTCAAGGTGCTATTT+TGG | + | chr4_2:61636178-61636197 | Msa0613060:CDS | 40.0% |
| CTGATAAGGTTAGACCCAAA+TGG | + | chr4_2:61636222-61636241 | Msa0613060:CDS | 40.0% | |
| ATCTGAGGAATTGGCCATTT+GGG | - | chr4_2:61636239-61636258 | None:intergenic | 40.0% | |
| AATCTGAGGAATTGGCCATT+TGG | - | chr4_2:61636240-61636259 | None:intergenic | 40.0% | |
| GTAGGAACAATAGGCAAAGT+TGG | - | chr4_2:61636287-61636306 | None:intergenic | 40.0% | |
| AGATCAGGTGTAGGAACAAT+AGG | - | chr4_2:61636296-61636315 | None:intergenic | 40.0% | |
| TATAGAGGGAAACCTAGGTT+AGG | + | chr4_2:61636377-61636396 | Msa0613060:CDS | 40.0% | |
| ATAGAGGGAAACCTAGGTTA+GGG | + | chr4_2:61636378-61636397 | Msa0613060:CDS | 40.0% | |
| TGATGTTGTTACTGATCCTG+AGG | + | chr4_2:61636490-61636509 | Msa0613060:CDS | 40.0% | |
| TTACTGATCCTGAGGTTAGT+AGG | + | chr4_2:61636498-61636517 | Msa0613060:CDS | 40.0% | |
| TACTGATCCTGAGGTTAGTA+GGG | + | chr4_2:61636499-61636518 | Msa0613060:CDS | 40.0% | |
| TACAATTCCCTACTAACCTC+AGG | - | chr4_2:61636509-61636528 | None:intergenic | 40.0% | |
| GGGAATTGTATGAAGAAGCT+AGG | + | chr4_2:61636519-61636538 | Msa0613060:CDS | 40.0% | |
| GTGAAGAGGGTTAGGTTTCT+TGG | - | chr4_2:61635828-61635847 | None:intergenic | 45.0% | |
| GAAGCCATGATCTTGTGAAG+AGG | - | chr4_2:61635842-61635861 | None:intergenic | 45.0% | |
| ! | ATCATGAAGATGAGAGCACG+TGG | - | chr4_2:61635882-61635901 | None:intergenic | 45.0% |
| GCTCTCATCTTCATGATCCA+TGG | + | chr4_2:61635885-61635904 | Msa0613060:CDS | 45.0% | |
| !! | GAAGATTGGAGTGGATTGGA+AGG | - | chr4_2:61635934-61635953 | None:intergenic | 45.0% |
| CAAGGAAGATTGGAGTGGAT+TGG | - | chr4_2:61635938-61635957 | None:intergenic | 45.0% | |
| TTGAGCAAGGAAGATTGGAG+TGG | - | chr4_2:61635943-61635962 | None:intergenic | 45.0% | |
| CCCATTTGAGCAAGGAAGAT+TGG | - | chr4_2:61635948-61635967 | None:intergenic | 45.0% | |
| AAGCGAAACCCATTTGAGCA+AGG | - | chr4_2:61635956-61635975 | None:intergenic | 45.0% | |
| CAAGGACATGGTCATTCTCA+AGG | + | chr4_2:61635993-61636012 | Msa0613060:CDS | 45.0% | |
| TGTACAAGAAGGTCAACGCT+AGG | - | chr4_2:61636035-61636054 | None:intergenic | 45.0% | |
| GCTGATCCAAAAGGGTTTCA+AGG | + | chr4_2:61636167-61636186 | Msa0613060:CDS | 45.0% | |
| GGTTTCCCTCTATACCTCAA+AGG | - | chr4_2:61636371-61636390 | None:intergenic | 45.0% | |
| TGAGGTATAGAGGGAAACCT+AGG | + | chr4_2:61636372-61636391 | Msa0613060:CDS | 45.0% | |
| ! | GACTGTGGTTGAGCTTTTGA+GGG | + | chr4_2:61636400-61636419 | Msa0613060:CDS | 45.0% |
| GTGAAGAGGGTTAGGTTTCT+TGG | - | chr4_2:61635828-61635847 | None:intergenic | 45.0% | |
| GAAGCCATGATCTTGTGAAG+AGG | - | chr4_2:61635842-61635861 | None:intergenic | 45.0% | |
| ! | ATCATGAAGATGAGAGCACG+TGG | - | chr4_2:61635882-61635901 | None:intergenic | 45.0% |
| GCTCTCATCTTCATGATCCA+TGG | + | chr4_2:61635885-61635904 | Msa0613060:CDS | 45.0% | |
| !! | GAAGATTGGAGTGGATTGGA+AGG | - | chr4_2:61635934-61635953 | None:intergenic | 45.0% |
| CAAGGAAGATTGGAGTGGAT+TGG | - | chr4_2:61635938-61635957 | None:intergenic | 45.0% | |
| TTGAGCAAGGAAGATTGGAG+TGG | - | chr4_2:61635943-61635962 | None:intergenic | 45.0% | |
| CCCATTTGAGCAAGGAAGAT+TGG | - | chr4_2:61635948-61635967 | None:intergenic | 45.0% | |
| AAGCGAAACCCATTTGAGCA+AGG | - | chr4_2:61635956-61635975 | None:intergenic | 45.0% | |
| CAAGGACATGGTCATTCTCA+AGG | + | chr4_2:61635993-61636012 | Msa0613060:CDS | 45.0% | |
| TGTACAAGAAGGTCAACGCT+AGG | - | chr4_2:61636035-61636054 | None:intergenic | 45.0% | |
| GCTGATCCAAAAGGGTTTCA+AGG | + | chr4_2:61636167-61636186 | Msa0613060:CDS | 45.0% | |
| GGTTTCCCTCTATACCTCAA+AGG | - | chr4_2:61636371-61636390 | None:intergenic | 45.0% | |
| TGAGGTATAGAGGGAAACCT+AGG | + | chr4_2:61636372-61636391 | Msa0613060:CDS | 45.0% | |
| ! | GACTGTGGTTGAGCTTTTGA+GGG | + | chr4_2:61636400-61636419 | Msa0613060:CDS | 45.0% |
| GGTTGTAGCCCCAGTAGTAA+GGG | - | chr4_2:61635746-61635765 | None:intergenic | 50.0% | |
| ! | TGAAGATGAGAGCACGTGGT+GGG | - | chr4_2:61635878-61635897 | None:intergenic | 50.0% |
| ! | ATGAAGATGAGAGCACGTGG+TGG | - | chr4_2:61635879-61635898 | None:intergenic | 50.0% |
| AGATGTCGTTGCCATAGCCA+TGG | - | chr4_2:61635905-61635924 | None:intergenic | 50.0% | |
| GCTATGGCAACGACATCTCA+TGG | + | chr4_2:61635907-61635926 | Msa0613060:CDS | 50.0% | |
| GAAACCTAGGTTAGGGACTG+TGG | + | chr4_2:61636385-61636404 | Msa0613060:CDS | 50.0% | |
| TCAACCACAGTCCCTAACCT+AGG | - | chr4_2:61636392-61636411 | None:intergenic | 50.0% | |
| ! | GGACTGTGGTTGAGCTTTTG+AGG | + | chr4_2:61636399-61636418 | Msa0613060:CDS | 50.0% |
| GGTTGTAGCCCCAGTAGTAA+GGG | - | chr4_2:61635746-61635765 | None:intergenic | 50.0% | |
| ! | TGAAGATGAGAGCACGTGGT+GGG | - | chr4_2:61635878-61635897 | None:intergenic | 50.0% |
| ! | ATGAAGATGAGAGCACGTGG+TGG | - | chr4_2:61635879-61635898 | None:intergenic | 50.0% |
| AGATGTCGTTGCCATAGCCA+TGG | - | chr4_2:61635905-61635924 | None:intergenic | 50.0% | |
| GCTATGGCAACGACATCTCA+TGG | + | chr4_2:61635907-61635926 | Msa0613060:CDS | 50.0% | |
| GAAACCTAGGTTAGGGACTG+TGG | + | chr4_2:61636385-61636404 | Msa0613060:CDS | 50.0% | |
| TCAACCACAGTCCCTAACCT+AGG | - | chr4_2:61636392-61636411 | None:intergenic | 50.0% | |
| ! | GGACTGTGGTTGAGCTTTTG+AGG | + | chr4_2:61636399-61636418 | Msa0613060:CDS | 50.0% |
| GGGTTGTAGCCCCAGTAGTA+AGG | - | chr4_2:61635747-61635766 | None:intergenic | 55.0% | |
| ! | GAAGATGAGAGCACGTGGTG+GGG | - | chr4_2:61635877-61635896 | None:intergenic | 55.0% |
| GGGTTGTAGCCCCAGTAGTA+AGG | - | chr4_2:61635747-61635766 | None:intergenic | 55.0% | |
| ! | GAAGATGAGAGCACGTGGTG+GGG | - | chr4_2:61635877-61635896 | None:intergenic | 55.0% |
| ! | CGTGGTGGGGTGGTAGGGTT+TGG | - | chr4_2:61635864-61635883 | None:intergenic | 65.0% |
| ! | GAGCACGTGGTGGGGTGGTA+GGG | - | chr4_2:61635869-61635888 | None:intergenic | 65.0% |
| ! | AGAGCACGTGGTGGGGTGGT+AGG | - | chr4_2:61635870-61635889 | None:intergenic | 65.0% |
| ! | GATGAGAGCACGTGGTGGGG+TGG | - | chr4_2:61635874-61635893 | None:intergenic | 65.0% |
| ! | CGTGGTGGGGTGGTAGGGTT+TGG | - | chr4_2:61635864-61635883 | None:intergenic | 65.0% |
| ! | GAGCACGTGGTGGGGTGGTA+GGG | - | chr4_2:61635869-61635888 | None:intergenic | 65.0% |
| ! | AGAGCACGTGGTGGGGTGGT+AGG | - | chr4_2:61635870-61635889 | None:intergenic | 65.0% |
| ! | GATGAGAGCACGTGGTGGGG+TGG | - | chr4_2:61635874-61635893 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61635690 | 61636667 | 61635690 | ID=Msa0613060;Name=Msa0613060 |
| chr4_2 | mRNA | 61635690 | 61636667 | 61635690 | ID=Msa0613060-mRNA-1;Parent=Msa0613060;Name=Msa0613060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|325 |
| chr4_2 | exon | 61635690 | 61636667 | 61635690 | ID=Msa0613060-mRNA-1:exon:16823;Parent=Msa0613060-mRNA-1 |
| chr4_2 | CDS | 61635690 | 61636667 | 61635690 | ID=Msa0613060-mRNA-1:cds;Parent=Msa0613060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
