AlfalfaGEDB | Msa0614600

M. sativa cultivar zhongmu-4 / Msa0614600

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805
PFAM: PF00350.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0614600	XP_013457218.1	96.574	759	5	1	1	738	1	759	0.0	1509

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0614600	sp\|Q84N64\|ARC5_ARATH	76.996	739	149	1	15	732	23	761	0.0	1164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0614600	A0A072UN67	96.574	759	5	1	1	738	1	759	0.0	1509

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0194370	Msa0614600	0.805618	1.223844e-49	-8.615850e-47
Msa0560650	Msa0614600	0.924124	1.070681e-89	-8.615850e-47
Msa0614600	Msa0639260	0.943358	1.388781e-102	-8.615850e-47
Msa0614600	Msa1122920	0.816706	4.816478e-52	-8.615850e-47
Msa0614600	Msa1122930	0.827089	1.896115e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0614600	MtrunA17_Chr4g0050661	96.574	759	5	1	1	738	1	759	0.0	1509
Msa0614600	MtrunA17_Chr8g0360401	31.626	449	262	10	21	442	27	457	9.01e-55	202
Msa0614600	MtrunA17_Chr8g0391891	28.649	185	106	6	41	205	36	214	3.74e-11	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0614600	AT3G19720.1	76.996	739	149	1	15	732	23	761	0.0	1164
Msa0614600	AT3G19720.2	75.372	739	125	2	15	732	23	725	0.0	1129
Msa0614600	AT3G19720.3	71.742	775	126	4	15	732	23	761	0.0	1104
Msa0614600	AT1G53140.1	29.204	565	345	15	21	549	43	588	1.30e-56	207

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Find 205 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGTGAGTATCTAAG+TGG	0.583085	4_2:+63674591	Msa0614600:CDS
AAATAGGGCCATACAGGCAC+AGG	0.587978	4_2:+63671151	Msa0614600:CDS
AAATTGATCCTGAATTGTCA+AGG	0.631423	4_2:+63671288	Msa0614600:CDS
AACATTACATGTAAATTGAA+GGG	0.554472	4_2:+63676636	Msa0614600:three_prime_UTR
AACCTGTTTGAAATCATCAT+TGG	0.384824	4_2:-63671492	None:intergenic
AACTTACCAAACTTATCAGG+AGG	0.646410	4_2:-63673043	None:intergenic
AAGACAAAGAAGAAAACGAG+TGG	0.685207	4_2:+63670479	Msa0614600:CDS
AAGACGGAGACTCGCAATGA+GGG	0.598166	4_2:-63670702	None:intergenic
AAGCAAGAAAGAAGTAGGAT+AGG	0.516003	4_2:+63672272	Msa0614600:CDS
AAGCATTTACAATTTCTTCC+CGG	0.417927	4_2:-63673650	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAGATAAGGAAAGGACTT+TGG	-	chr4_2:63670394-63670413	None:intergenic	30.0%
TTACAATATTCCTGCATGTT+TGG	+	chr4_2:63670812-63670831	Msa0614600:intron	30.0%
AAAATTGTGAGGACCAAAAT+GGG	+	chr4_2:63670924-63670943	Msa0614600:intron	30.0%
AAATTGATCCTGAATTGTCA+AGG	+	chr4_2:63671288-63671307	Msa0614600:CDS	30.0%
TAAAACAAGACAACGTGTAT+TGG	-	chr4_2:63671667-63671686	None:intergenic	30.0%
TGGTTAATTTATCAAGGGTA+GGG	+	chr4_2:63671863-63671882	Msa0614600:intron	30.0%
TTATCCAATTCACCAATCAA+CGG	+	chr4_2:63671999-63672018	Msa0614600:intron	30.0%
CAATAAATCCTAAACTTGCA+AGG	-	chr4_2:63672079-63672098	None:intergenic	30.0%
GATCTATTTAGCTGTACTTA+TGG	+	chr4_2:63672177-63672196	Msa0614600:intron	30.0%
ACAACAACAAATTCTAGTGT+AGG	-	chr4_2:63672348-63672367	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	63670316	63676886	63670316	ID=Msa0614600;Name=Msa0614600
chr4_2	mRNA	63670316	63676886	63670316	ID=Msa0614600-mRNA-1;Parent=Msa0614600;Name=Msa0614600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=132\|0.92\|0.93\|1\|1\|1\|15\|283\|738
chr4_2	exon	63670316	63670786	63670316	ID=Msa0614600-mRNA-1:exon:17765;Parent=Msa0614600-mRNA-1
chr4_2	exon	63671062	63671511	63671062	ID=Msa0614600-mRNA-1:exon:17766;Parent=Msa0614600-mRNA-1
chr4_2	exon	63672206	63672339	63672206	ID=Msa0614600-mRNA-1:exon:17767;Parent=Msa0614600-mRNA-1
chr4_2	exon	63672447	63672539	63672447	ID=Msa0614600-mRNA-1:exon:17768;Parent=Msa0614600-mRNA-1
chr4_2	exon	63672682	63672745	63672682	ID=Msa0614600-mRNA-1:exon:17769;Parent=Msa0614600-mRNA-1
chr4_2	exon	63673010	63673058	63673010	ID=Msa0614600-mRNA-1:exon:17770;Parent=Msa0614600-mRNA-1
chr4_2	exon	63673210	63673292	63673210	ID=Msa0614600-mRNA-1:exon:17771;Parent=Msa0614600-mRNA-1
chr4_2	exon	63673555	63673712	63673555	ID=Msa0614600-mRNA-1:exon:17772;Parent=Msa0614600-mRNA-1
chr4_2	exon	63673800	63673860	63673800	ID=Msa0614600-mRNA-1:exon:17773;Parent=Msa0614600-mRNA-1
chr4_2	exon	63674127	63674189	63674127	ID=Msa0614600-mRNA-1:exon:17774;Parent=Msa0614600-mRNA-1
chr4_2	exon	63674591	63674691	63674591	ID=Msa0614600-mRNA-1:exon:17775;Parent=Msa0614600-mRNA-1
chr4_2	exon	63674916	63674973	63674916	ID=Msa0614600-mRNA-1:exon:17776;Parent=Msa0614600-mRNA-1
chr4_2	exon	63675152	63675484	63675152	ID=Msa0614600-mRNA-1:exon:17777;Parent=Msa0614600-mRNA-1
chr4_2	exon	63676270	63676434	63676270	ID=Msa0614600-mRNA-1:exon:17778;Parent=Msa0614600-mRNA-1
chr4_2	exon	63676538	63676886	63676538	ID=Msa0614600-mRNA-1:exon:17779;Parent=Msa0614600-mRNA-1
chr4_2	five_prime_UTR	63670316	63670447	63670316	ID=Msa0614600-mRNA-1:five_prime_utr;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63670448	63670786	63670448	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63671062	63671511	63671062	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63672206	63672339	63672206	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63672447	63672539	63672447	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63672682	63672745	63672682	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63673010	63673058	63673010	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63673210	63673292	63673210	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63673555	63673712	63673555	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63673800	63673860	63673800	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63674127	63674189	63674127	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63674591	63674691	63674591	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63674916	63674973	63674916	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63675152	63675484	63675152	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63676270	63676434	63676270	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	CDS	63676538	63676603	63676538	ID=Msa0614600-mRNA-1:cds;Parent=Msa0614600-mRNA-1
chr4_2	three_prime_UTR	63676604	63676886	63676604	ID=Msa0614600-mRNA-1:three_prime_utr;Parent=Msa0614600-mRNA-1

Gene Sequence

>Msa0614600

ATGGAGGAAGAAACAGAGCACCACCAACTCCAAGACAAAGAAGAAAACGAGTGGCGTCTCTACGAAGCTTACAATGAACTTCACGCGCTTGCTCAAGAACTTCACACGCCTTTCGACGCGCCGGCTGTGCTGGTGGTGGGCCACCAAACAGACGGGAAGAGCGCCTTAGTTGAGGCTCTAATGGGCTTCCAGTTCAACCACGTCGGTGGTGGCACCAAAACCCGCCGGCCCATTACTCTTCATATGAAATATGGCCCTCATTGCGAGTCTCCGTCTTGTTATCTCCTCTCTGATGATGACCCTTCTCTTTCTCACCATATGTCCCTCTCCCAAATCCAGGAAATAATAATAAAAGTGGAATACAAATACTGTCCTAATCTCACCATAATAGACACACCAGGACTAGTTGCTCCTGCACCAGGTCGTAAAAATAGGGCCATACAGGCACAGGCACGAGCCGTAGAGTCACTCGTTCGTGCAAAAATGCAGCACAAGGAGTTCATTATACTCTGTCTTGAAGATTGTAGTGATTGGAGCAACGCAACTACCAGGCGCGTTGTAATGCAAATTGATCCTGAATTGTCAAGGACTGTGATTGTTTCGACTAAGTTGGATACTAGGATACCACAATTTTCACGTCCTTCTGATGTTGAAGTTTTCCTTTCGCCGCCTGCGTCTACGCTTGATGGATGCATTCTTGGTGATTCTCCGTTCTTTACTTCGGTGCCTTCTGGAAGAGTTGGTTCTGGAACTCATTGTTTGTACTCCTCCAATGATGATTTCAAACAGGCAGTAAGCTTCAGAGAGATAGAAGATGTTGCATCCTTGGAGGAGAAATTGGGAAGGCCATTGTCAAAGCAAGAAAGAAGTAGGATAGGTGTGAGCAAACTTAGGTTGTTTCTTGAAGAAATACTACAAAAGAGGTATATAAATAATGTACCATTGATCATTCCACTTCTTGAGAAGGAGCATCGGAGCGTGACAAGGAAATTGAGTGATATAAATCAAGAATTGAGCACACTGGATGAAGCCAAGTTGAAGGAGAAAGGAAGAGCTTTTCATGATATGTTCTTGACCAAGCTGTCATTGCTGCTTAAAGGGACAGTTGTCGCGCCTCCTGATAAGTTTGGTGAAACATTACCAGATGAGCGAATAAATGGAGGTGCATTTGTTGGTGCTGATGGTGTTCAGTTCCCTCACAAGCTAATACCTAATGCAGGGATGCGTCTTTATGGGGGTGCACAATATCATCGAGCAATGGCTGAATTTCGTTTTGTAGTTGGAGGAATCAAGTGCCCTCCAATTACCCGGGAAGAAATTGTAAATGCTTGTGGAGTTGAAGACATTCATGATGGAACAAACTACTCTAGGACTGCTTGTGTAATTGCTGTTGCAAAGGCTCATGATACATTTGAACCTTTTCTTCATCAGTTGGGGTCTAGATTGTTGCACATACTTAAGAGATTGCTCCCAATCTCTTTTTATCTTCTTCAGAAAGATTGTGAGTATCTAAGTGGCCATCAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCGACAACTTTGCAGAATCCACTGAAAAATCATGCCGTGAAAAATGCATGGAGGACTTGGTAAGCACCACACGATATGTCTCATGGTCTCTACACAATAAGAGTCGGGCAGGATTACGCCAGTTCTTAGATTCATTTGGTGGAACAGAACATTCCAATGCTTGTAATGATCCCACTGCAACTGTTCTATCACAAACAAATGTGCAAGAGAAGGAAGACACAAAGCCACAACTAGAAGTAAAGCTCAGTCACGTGGCCTCTGGAACTGATTCAAGCACGTCCACCCAGACAGCTGAAACAAAGCTTGCGGACCTTCTAGATAGTACACTTTGGAATCGGAGGCTTGCACCCTCTTCTGAAAGGATTGTTTATGGTTTGGTACAACAAATATTTCATGGCATACGAGAATATTTCTTGGTTTCTACAGAATTAAAGTTCAACTGTTTCCTCTTGATGCCCATTGTGGATAAGTTGCCTGCACGCCTTCGGGAGGACCTAGAATCTGCTTTTGAAGATGACCTGGAAAATGTTTTTGACATGACCAATCTGCAACTTTCACTGGGGCAACAGAAAAGAGATACAGAAATTGAACTGAAAAGGATCAAGAGGCTCAAAGATAAATTCAGAATGATACATGAGCAGCTAATTCTACGTCAAGCCGCTTGA

Protein sequence

>Msa0614600

MEEETEHHQLQDKEENEWRLYEAYNELHALAQELHTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYGPHCESPSCYLLSDDDPSLSHHMSLSQIQEIIIKVEYKYCPNLTIIDTPGLVAPAPGRKNRAIQAQARAVESLVRAKMQHKEFIILCLEDCSDWSNATTRRVVMQIDPELSRTVIVSTKLDTRIPQFSRPSDVEVFLSPPASTLDGCILGDSPFFTSVPSGRVGSGTHCLYSSNDDFKQAVSFREIEDVASLEEKLGRPLSKQERSRIGVSKLRLFLEEILQKRYINNVPLIIPLLEKEHRSVTRKLSDINQELSTLDEAKLKEKGRAFHDMFLTKLSLLLKGTVVAPPDKFGETLPDERINGGAFVGADGVQFPHKLIPNAGMRLYGGAQYHRAMAEFRFVVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKAHDTFEPFLHQLGSRLLHILKRLLPISFYLLQKDCEYLSGHQVFLRRVASAFDNFAESTEKSCREKCMEDLVSTTRYVSWSLHNKSRAGLRQFLDSFGGTEHSNACNDPTATVLSQTNVQEKEDTKPQLEVKLSHVASGTDSSTSTQTAETKLADLLDSTLWNRRLAPSSERIVYGLVQQIFHGIREYFLVSTELKFNCFLLMPIVDKLPARLREDLESAFEDDLENVFDMTNLQLSLGQQKRDTEIELKRIKRLKDKFRMIHEQLILRQAA*