AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194370 MtrunA17_Chr2g0285001 94.164 377 22 0 1 377 1 377 0.0 738
Msa0194370 MtrunA17_Chr2g0284991 75.853 381 87 2 1 377 1 380 0.0 587
Msa0194370 MtrunA17_Chr2g0284941 76.127 377 68 3 1 377 1 355 0.0 568
Msa0194370 MtrunA17_Chr2g0284951 76.127 377 84 3 1 377 1 371 0.0 566
Msa0194370 MtrunA17_Chr2g0284921 58.380 358 143 6 6 360 6 360 5.94e-137 394
Msa0194370 MtrunA17_Chr8g0380031 55.402 361 149 7 1 360 56 405 2.10e-130 380
Msa0194370 MtrunA17_Chr3g0085881 56.389 360 149 6 1 360 1 352 4.79e-130 377
Msa0194370 MtrunA17_Chr8g0380041 48.169 355 172 8 14 360 12 362 1.97e-108 322
Msa0194370 MtrunA17_Chr2g0285061 42.896 366 193 8 3 360 7 364 5.96e-97 293
Msa0194370 MtrunA17_Chr3g0086641 42.896 366 195 9 5 360 8 369 1.24e-96 292
Msa0194370 MtrunA17_Chr3g0077581 41.758 364 193 9 8 359 12 368 2.08e-86 266
Msa0194370 MtrunA17_Chr3g0077571 40.385 364 201 10 4 360 2 356 1.29e-81 253
Msa0194370 MtrunA17_Chr3g0131321 40.988 344 182 11 34 363 35 371 1.31e-72 231
Msa0194370 MtrunA17_Chr2g0284931 47.436 234 104 3 127 360 5 219 1.80e-64 204
Msa0194370 MtrunA17_Chr4g0017431 35.121 373 211 12 5 360 4 362 1.04e-61 202
Msa0194370 MtrunA17_Chr7g0275011 34.153 366 224 9 4 359 6 364 1.47e-60 199
Msa0194370 MtrunA17_Chr5g0434621 38.245 319 181 9 35 343 27 339 7.29e-60 197
Msa0194370 MtrunA17_Chr7g0275021 34.530 362 219 9 11 359 8 364 4.64e-58 193
Msa0194370 MtrunA17_Chr4g0068441 36.141 368 212 12 7 360 9 367 8.39e-57 189
Msa0194370 MtrunA17_Chr7g0274991 33.795 361 218 10 15 359 8 363 4.97e-56 187
Msa0194370 MtrunA17_Chr2g0294311 35.733 375 206 14 9 360 10 372 1.30e-55 186
Msa0194370 MtrunA17_Chr1g0189891 33.060 366 232 8 8 367 4 362 6.62e-53 179
Msa0194370 MtrunA17_Chr1g0189901 32.840 338 213 8 34 362 32 364 9.66e-53 179
Msa0194370 MtrunA17_Chr1g0182811 31.915 376 234 10 1 362 1 368 1.09e-51 176
Msa0194370 MtrunA17_Chr6g0457921 34.483 348 200 9 5 336 4 339 1.24e-51 176
Msa0194370 MtrunA17_Chr8g0374101 32.514 366 227 11 9 358 12 373 1.27e-51 176
Msa0194370 MtrunA17_Chr1g0189931 32.743 339 214 8 33 362 32 365 1.41e-51 176
Msa0194370 MtrunA17_Chr3g0085231 34.605 367 210 13 4 360 3 349 2.09e-51 175
Msa0194370 MtrunA17_Chr4g0060811 38.095 315 177 10 35 337 29 337 5.16e-51 174
Msa0194370 MtrunA17_Chr7g0275001 33.138 341 213 9 29 359 21 356 9.35e-51 174
Msa0194370 MtrunA17_Chr3g0092131 36.311 347 195 12 5 338 1 334 7.77e-50 171
Msa0194370 MtrunA17_Chr5g0444401 31.720 372 223 12 5 359 3 360 1.76e-49 170
Msa0194370 MtrunA17_Chr2g0320671 35.057 348 200 14 5 337 4 340 2.24e-49 169
Msa0194370 MtrunA17_Chr2g0294301 35.514 321 188 11 30 337 32 346 9.06e-49 168
Msa0194370 MtrunA17_Chr5g0396511 32.743 339 211 12 35 362 48 380 5.00e-47 164
Msa0194370 MtrunA17_Chr7g0215961 31.686 344 206 9 26 359 26 350 7.86e-47 163
Msa0194370 MtrunA17_Chr4g0008851 30.588 340 222 7 33 362 32 367 5.19e-46 161
Msa0194370 MtrunA17_Chr1g0156911 32.394 355 218 13 1 339 1 349 6.13e-46 160
Msa0194370 MtrunA17_Chr4g0027521 35.380 342 193 12 13 338 12 341 1.40e-45 159
Msa0194370 MtrunA17_Chr3g0099231 29.504 383 238 12 1 367 1 367 1.61e-45 160
Msa0194370 MtrunA17_Chr3g0105401 33.425 362 213 14 1 348 1 348 2.13e-45 159
Msa0194370 MtrunA17_Chr3g0099151 32.479 351 202 14 30 359 84 420 2.44e-45 160
Msa0194370 MtrunA17_Chr3g0099161 32.376 383 216 17 1 359 61 424 8.05e-44 157
Msa0194370 MtrunA17_Chr1g0156901 32.571 350 203 11 3 331 16 353 1.61e-43 155
Msa0194370 MtrunA17_Chr1g0156921 32.849 344 203 13 9 331 10 346 2.09e-43 154
Msa0194370 MtrunA17_Chr5g0438621 31.977 344 207 13 8 337 10 340 5.17e-43 153
Msa0194370 MtrunA17_Chr2g0285041 62.185 119 44 1 87 204 1 119 5.56e-43 146
Msa0194370 MtrunA17_Chr5g0405821 35.494 324 184 11 31 337 41 356 2.57e-42 151
Msa0194370 MtrunA17_Chr5g0432101 32.209 326 197 12 28 337 28 345 2.00e-41 149
Msa0194370 MtrunA17_Chr3g0120861 32.919 322 196 12 29 337 34 348 3.84e-41 148
Msa0194370 MtrunA17_Chr5g0420811 31.595 326 192 11 29 341 29 336 4.40e-41 147
Msa0194370 MtrunA17_Chr3g0142921 33.546 313 188 9 32 331 35 340 6.94e-41 147
Msa0194370 MtrunA17_Chr1g0156891 34.796 319 191 11 31 337 41 354 7.89e-41 147
Msa0194370 MtrunA17_Chr5g0438631 30.484 351 218 12 1 337 1 339 8.86e-41 147
Msa0194370 MtrunA17_Chr2g0330781 33.231 325 188 13 31 337 29 342 2.49e-40 145
Msa0194370 MtrunA17_Chr5g0405831 34.049 326 197 11 31 343 41 361 8.33e-40 145
Msa0194370 MtrunA17_Chr5g0438641 32.647 340 206 14 11 337 13 342 1.18e-39 144
Msa0194370 MtrunA17_Chr8g0370951 31.412 347 210 13 4 330 1 339 2.16e-39 144
Msa0194370 MtrunA17_Chr8g0371491 31.672 341 208 13 11 335 14 345 2.25e-39 143
Msa0194370 MtrunA17_Chr8g0341001 31.921 354 212 14 1 337 2 343 7.96e-38 139
Msa0194370 MtrunA17_Chr8g0344941 31.250 336 206 13 14 331 18 346 1.04e-37 139
Msa0194370 MtrunA17_Chr4g0046151 28.736 348 217 13 13 337 16 355 1.98e-37 138
Msa0194370 MtrunA17_Chr2g0301641 29.897 388 226 18 8 365 10 381 2.73e-37 139
Msa0194370 MtrunA17_Chr1g0156931 31.195 343 209 13 14 336 14 349 6.13e-37 137
Msa0194370 MtrunA17_Chr8g0349321 29.919 371 223 15 13 361 10 365 2.72e-36 135
Msa0194370 MtrunA17_Chr2g0283191 29.395 347 214 13 14 337 21 359 7.94e-36 134
Msa0194370 MtrunA17_Chr8g0371471 29.261 352 225 13 3 336 6 351 2.59e-35 132
Msa0194370 MtrunA17_Chr6g0455661 32.794 247 153 5 122 360 230 471 1.51e-34 132
Msa0194370 MtrunA17_Chr6g0455661 47.321 112 47 4 32 143 30 129 1.16e-22 99.0
Msa0194370 MtrunA17_Chr8g0349341 29.459 370 224 14 14 361 11 365 2.02e-34 130
Msa0194370 MtrunA17_Chr8g0344931 30.028 353 219 13 19 360 25 360 7.40e-34 129
Msa0194370 MtrunA17_Chr8g0371481 28.977 352 227 13 3 336 6 352 8.15e-34 129
Msa0194370 MtrunA17_Chr3g0142941 30.154 325 201 13 31 339 45 359 6.85e-33 126
Msa0194370 MtrunA17_Chr6g0459921 32.645 242 150 5 127 360 124 360 1.55e-32 125
Msa0194370 MtrunA17_Chr1g0157001 32.092 349 192 17 38 358 41 372 2.41e-32 125
Msa0194370 MtrunA17_Chr5g0437421 29.909 331 202 13 29 338 28 349 4.16e-31 121
Msa0194370 MtrunA17_Chr2g0284981 59.140 93 34 1 289 377 8 100 9.75e-31 113
Msa0194370 MtrunA17_Chr8g0349301 30.868 311 175 12 9 299 6 296 2.63e-29 115
Msa0194370 MtrunA17_Chr8g0370981 26.634 413 227 15 9 359 19 417 3.01e-29 117
Msa0194370 MtrunA17_Chr7g0229591 34.483 203 125 6 10 209 7 204 1.90e-27 107
Msa0194370 MtrunA17_Chr1g0178931 28.213 319 190 15 34 335 38 334 4.34e-27 110
Msa0194370 MtrunA17_Chr1g0178941 29.283 321 188 14 34 333 41 343 1.73e-26 108
Msa0194370 MtrunA17_Chr1g0198351 26.124 356 210 14 4 332 7 336 2.28e-24 102
Msa0194370 MtrunA17_Chr1g0160101 25.781 384 234 12 5 352 11 379 3.68e-24 102
Msa0194370 MtrunA17_Chr6g0450721 27.528 356 207 14 23 353 23 352 7.59e-24 101
Msa0194370 MtrunA17_Chr7g0266061 26.462 325 197 15 28 333 37 338 1.41e-23 100
Msa0194370 MtrunA17_Chr8g0381581 24.728 368 230 13 5 336 11 367 1.35e-22 98.2
Msa0194370 MtrunA17_Chr8g0349331 26.023 342 195 11 34 361 36 333 1.80e-22 97.1
Msa0194370 MtrunA17_Chr6g0450711 27.616 344 197 11 28 337 117 442 3.27e-22 97.8
Msa0194370 MtrunA17_Chr6g0450701 27.371 369 202 16 11 337 15 359 6.16e-22 96.3
Msa0194370 MtrunA17_Chr6g0469511 44.355 124 62 5 21 140 18 138 1.08e-21 90.1
Msa0194370 MtrunA17_Chr7g0226911 26.823 384 208 13 13 344 10 372 1.29e-21 95.1
Msa0194370 MtrunA17_Chr1g0160031 27.434 339 197 13 32 336 38 361 1.51e-21 95.1
Msa0194370 MtrunA17_Chr2g0285051 60.440 91 32 2 1 88 1 90 2.97e-21 88.2
Msa0194370 MtrunA17_Chr7g0275291 26.301 365 210 15 13 336 9 355 5.54e-21 93.2
Msa0194370 MtrunA17_Chr7g0254461 25.729 377 233 13 5 344 13 379 7.47e-21 93.2
Msa0194370 MtrunA17_Chr4g0027561 41.379 116 64 3 10 122 7 121 8.46e-21 87.8
Msa0194370 MtrunA17_Chr2g0283511 29.428 367 208 18 6 337 5 355 2.43e-20 91.7
Msa0194370 MtrunA17_Chr2g0285031 54.054 74 34 0 290 363 7 80 3.28e-19 81.3
Msa0194370 MtrunA17_Chr6g0450731 27.879 330 195 14 32 337 32 342 6.54e-19 87.0
Msa0194370 MtrunA17_Chr1g0198381 25.625 320 193 14 34 333 3 297 7.70e-19 86.3
Msa0194370 MtrunA17_Chr3g0104821 28.655 342 187 18 34 337 45 367 1.18e-18 86.7
Msa0194370 MtrunA17_Chr1g0160011 25.352 355 212 15 32 352 39 374 1.72e-18 86.3
Msa0194370 MtrunA17_Chr7g0226931 25.185 405 206 12 1 337 4 379 1.11e-17 84.0
Msa0194370 MtrunA17_Chr8g0370961 26.459 257 158 11 120 359 1 243 2.03e-17 80.9
Msa0194370 MtrunA17_Chr7g0226941 25.071 351 195 11 32 337 32 359 2.97e-17 82.4
Msa0194370 MtrunA17_Chr1g0159991 24.791 359 211 14 32 352 35 372 9.06e-17 80.9
Msa0194370 MtrunA17_Chr2g0301581 26.558 369 196 18 10 337 6 340 1.06e-16 80.5
Msa0194370 MtrunA17_Chr2g0283501 26.870 361 213 16 3 331 7 348 3.17e-16 79.3
Msa0194370 MtrunA17_Chr2g0301541 26.558 369 196 18 10 337 6 340 3.24e-16 79.3
Msa0194370 MtrunA17_Chr1g0198391 25.937 347 175 14 34 332 34 346 3.68e-16 79.0
Msa0194370 MtrunA17_Chr1g0189921 45.652 92 47 3 33 122 31 121 4.36e-16 75.1
Msa0194370 MtrunA17_Chr2g0321991 40.336 119 59 5 3 117 9 119 5.19e-16 73.9
Msa0194370 MtrunA17_Chr7g0271551 25.698 358 220 14 8 338 8 346 5.42e-16 78.6
Msa0194370 MtrunA17_Chr4g0057991 24.695 328 212 12 34 337 40 356 6.27e-16 78.6
Msa0194370 MtrunA17_Chr8g0370971 43.396 106 52 4 24 122 29 133 1.20e-15 73.9
Msa0194370 MtrunA17_Chr4g0027571 28.638 213 135 7 135 336 3 209 3.49e-15 74.3
Msa0194370 MtrunA17_Chr7g0273101 24.490 343 209 11 32 338 28 356 3.74e-14 73.2
Msa0194370 MtrunA17_Chr2g0308201 47.059 85 41 3 4 87 7 88 9.85e-14 66.6
Msa0194370 MtrunA17_Chr1g0191461 23.669 338 217 13 32 338 30 357 6.14e-13 69.3
Msa0194370 MtrunA17_Chr5g0440501 25.806 248 163 8 131 362 10 252 9.67e-13 67.8
Msa0194370 MtrunA17_Chr1g0189911 26.351 148 100 4 222 362 2 147 1.58e-11 62.0
Msa0194370 MtrunA17_Chr3g0112821 25.862 348 207 17 34 352 31 356 2.83e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194370 AT1G29670.1 47.139 367 182 8 1 360 1 362 1.68e-110 328
Msa0194370 AT1G29670.2 47.139 367 182 8 1 360 69 430 3.35e-109 327
Msa0194370 AT1G29660.1 45.924 368 186 9 1 360 1 363 4.26e-106 317
Msa0194370 AT5G45670.1 45.330 364 187 8 4 359 1 360 3.39e-101 304
Msa0194370 AT4G18970.1 46.491 342 172 7 27 360 22 360 5.06e-100 301
Msa0194370 AT4G18970.2 46.491 342 172 7 27 360 22 360 8.22e-99 300
Msa0194370 AT1G33811.1 40.921 369 196 8 4 359 9 368 1.48e-89 275
Msa0194370 AT2G19010.1 43.491 338 174 7 8 342 10 333 3.26e-86 265
Msa0194370 AT2G19010.2 43.195 338 175 6 8 342 40 363 2.12e-85 264
Msa0194370 AT2G19050.1 44.127 315 164 7 30 341 28 333 8.32e-82 254
Msa0194370 AT1G71691.2 39.118 340 193 9 27 359 49 381 1.36e-74 236
Msa0194370 AT4G30140.1 41.441 333 177 6 30 359 30 347 2.66e-74 234
Msa0194370 AT5G08460.1 38.606 373 209 12 1 358 15 382 3.60e-74 235
Msa0194370 AT2G19060.1 41.231 325 178 8 21 341 19 334 1.27e-72 230
Msa0194370 AT2G19050.2 46.988 249 123 5 30 278 28 267 5.18e-69 219
Msa0194370 AT5G15720.1 39.093 353 190 11 26 360 18 363 2.45e-68 219
Msa0194370 AT1G71250.1 37.363 364 199 11 13 358 18 370 3.70e-64 209
Msa0194370 AT1G71691.3 41.667 252 142 5 27 278 49 295 1.65e-58 192
Msa0194370 AT3G50400.1 34.483 377 223 13 4 360 1 373 3.01e-53 181
Msa0194370 AT5G37690.1 36.593 317 177 11 35 337 29 335 1.48e-52 178
Msa0194370 AT3G04290.1 32.102 352 219 9 14 355 14 355 1.61e-52 179
Msa0194370 AT5G15720.2 43.200 250 129 7 26 265 18 264 3.19e-52 176
Msa0194370 AT1G74460.1 37.463 339 184 13 16 337 6 333 3.95e-52 177
Msa0194370 AT1G71691.1 34.266 286 175 8 81 359 1 280 4.02e-51 172
Msa0194370 AT2G23540.1 36.250 320 183 10 35 337 50 365 5.35e-51 175
Msa0194370 AT5G33370.1 31.965 341 218 8 28 359 25 360 5.97e-50 172
Msa0194370 AT5G18430.1 33.038 339 207 9 11 337 10 340 2.48e-49 170
Msa0194370 AT4G28780.1 30.376 372 235 12 1 359 1 361 1.26e-48 168
Msa0194370 AT2G04570.1 33.236 343 209 11 15 344 10 345 3.73e-47 164
Msa0194370 AT4G16230.1 40.984 244 135 8 13 251 10 249 6.43e-47 160
Msa0194370 AT5G15720.3 35.943 281 163 7 93 360 56 332 6.44e-47 163
Msa0194370 AT5G37690.2 34.700 317 175 12 35 337 29 327 8.00e-47 163
Msa0194370 AT4G10950.2 31.195 343 215 12 31 360 69 403 1.89e-45 161
Msa0194370 AT5G03820.1 32.764 351 216 12 1 337 1 345 2.89e-44 157
Msa0194370 AT5G41890.1 32.703 370 210 15 14 358 17 372 4.32e-44 157
Msa0194370 AT5G03820.2 34.462 325 193 12 27 337 55 373 9.04e-44 156
Msa0194370 AT4G10950.1 31.195 343 211 13 31 360 69 399 2.12e-43 155
Msa0194370 AT2G42990.1 31.214 346 218 12 4 337 1 338 2.20e-42 151
Msa0194370 AT4G26790.1 33.540 322 194 11 29 337 25 339 2.71e-42 151
Msa0194370 AT4G26790.2 33.540 322 194 11 29 337 25 339 2.71e-42 151
Msa0194370 AT5G55050.1 30.508 354 222 11 23 359 28 374 2.86e-42 152
Msa0194370 AT1G59406.1 31.805 349 209 14 5 336 1 337 4.88e-41 148
Msa0194370 AT1G59030.1 31.805 349 209 14 5 336 1 337 4.88e-41 148
Msa0194370 AT1G58725.1 31.805 349 209 14 5 336 1 337 4.88e-41 148
Msa0194370 AT3G53100.1 34.557 327 194 11 24 337 20 339 1.08e-40 147
Msa0194370 AT5G63170.1 30.488 328 210 9 9 330 4 319 1.23e-40 147
Msa0194370 AT5G03810.1 31.818 352 214 14 1 337 1 341 3.09e-40 146
Msa0194370 AT5G22810.1 33.894 357 193 14 8 337 7 347 3.82e-40 145
Msa0194370 AT3G14820.1 33.651 315 191 10 26 330 25 331 8.74e-40 144
Msa0194370 AT5G42170.1 33.750 320 188 14 31 336 48 357 1.24e-39 145
Msa0194370 AT1G20135.1 31.118 331 201 13 11 330 6 320 3.09e-39 142
Msa0194370 AT1G75890.2 32.000 325 200 10 32 342 46 363 3.49e-39 143
Msa0194370 AT1G75890.3 32.000 325 200 10 32 342 75 392 6.78e-39 143
Msa0194370 AT2G30220.1 30.655 336 206 12 16 331 11 339 2.77e-38 141
Msa0194370 AT1G58430.1 31.210 314 196 10 32 331 34 341 5.66e-38 140
Msa0194370 AT1G75880.1 31.818 352 217 15 3 337 19 364 6.40e-38 140
Msa0194370 AT1G75880.2 31.818 352 216 15 3 337 19 363 8.64e-38 140
Msa0194370 AT1G75890.1 31.361 338 198 12 32 342 46 376 1.96e-37 139
Msa0194370 AT5G33370.2 33.597 253 163 5 28 278 25 274 1.47e-36 135
Msa0194370 AT2G03980.2 29.377 337 208 9 22 341 32 355 2.19e-36 136
Msa0194370 AT2G03980.3 29.377 337 208 9 22 341 32 355 2.19e-36 136
Msa0194370 AT2G03980.1 29.377 337 208 9 22 341 32 355 2.19e-36 136
Msa0194370 AT2G03980.4 29.377 337 208 9 22 341 32 355 2.19e-36 136
Msa0194370 AT3G16370.1 31.595 326 194 14 31 338 28 342 2.41e-36 135
Msa0194370 AT2G31540.1 31.546 317 199 11 28 331 30 341 3.89e-36 135
Msa0194370 AT1G71120.1 28.857 350 218 13 29 363 27 360 8.23e-36 134
Msa0194370 AT2G24560.1 30.435 345 218 11 3 331 2 340 1.65e-35 133
Msa0194370 AT1G53920.1 30.599 317 196 12 26 327 41 348 3.78e-35 133
Msa0194370 AT1G58520.3 30.909 330 195 14 21 336 20 330 4.67e-35 132
Msa0194370 AT1G58525.1 30.909 330 195 14 21 336 20 330 4.67e-35 132
Msa0194370 AT1G20130.2 32.087 321 189 11 31 330 182 494 6.60e-35 134
Msa0194370 AT1G06990.1 29.814 322 207 11 29 337 33 348 1.08e-34 131
Msa0194370 AT1G20130.1 32.087 321 189 11 31 330 202 514 1.14e-34 134
Msa0194370 AT2G30310.1 29.524 315 200 11 32 331 33 340 1.22e-34 131
Msa0194370 AT3G43570.1 30.294 340 188 15 8 336 7 308 4.33e-34 129
Msa0194370 AT1G73610.1 31.804 327 197 13 13 330 16 325 5.28e-34 129
Msa0194370 AT2G40250.1 28.395 324 210 11 31 338 34 351 1.67e-33 128
Msa0194370 AT3G14225.2 30.699 329 200 12 28 337 32 351 4.73e-33 127
Msa0194370 AT5G45950.1 27.353 340 233 10 11 343 18 350 6.96e-33 126
Msa0194370 AT3G14225.1 30.514 331 202 12 28 337 32 355 9.91e-33 126
Msa0194370 AT5G45960.1 28.213 319 207 10 28 330 42 354 1.34e-32 126
Msa0194370 AT5G40990.1 29.288 379 227 15 7 360 10 372 1.36e-32 126
Msa0194370 AT1G20132.1 30.275 327 212 11 32 347 60 381 4.40e-32 124
Msa0194370 AT1G23500.1 31.965 341 193 14 13 337 16 333 6.33e-32 123
Msa0194370 AT1G75900.1 28.613 346 216 14 13 337 18 353 1.84e-30 120
Msa0194370 AT3G43550.1 31.488 289 175 10 8 287 7 281 2.06e-30 118
Msa0194370 AT1G75920.2 30.357 336 208 13 6 330 4 324 2.48e-30 119
Msa0194370 AT1G75910.1 31.818 330 200 14 13 330 8 324 7.86e-30 117
Msa0194370 AT1G75930.1 29.787 329 208 12 13 330 8 324 2.28e-29 116
Msa0194370 AT2G04020.2 29.595 321 168 13 32 342 42 314 1.13e-28 114
Msa0194370 AT2G24560.2 32.576 264 166 8 6 261 5 264 8.04e-28 112
Msa0194370 AT1G53990.1 27.083 384 233 15 9 363 1 366 4.71e-27 110
Msa0194370 AT1G75920.1 28.902 346 209 13 9 330 2 334 4.66e-26 107
Msa0194370 AT1G53940.2 27.557 352 215 16 33 360 39 374 4.79e-26 108
Msa0194370 AT1G20120.1 28.882 322 200 14 32 335 77 387 5.72e-26 108
Msa0194370 AT1G28570.1 29.446 343 201 15 23 337 28 357 8.07e-26 107
Msa0194370 AT2G04020.1 33.333 225 129 8 32 245 42 256 2.14e-25 103
Msa0194370 AT2G27360.1 28.169 355 217 12 4 331 8 351 2.34e-25 106
Msa0194370 AT5G03610.1 26.593 361 211 16 1 330 1 338 3.03e-25 105
Msa0194370 AT1G28610.2 26.882 372 215 14 1 337 4 353 1.69e-24 103
Msa0194370 AT1G54020.2 25.876 371 231 12 3 359 7 347 5.24e-24 102
Msa0194370 AT1G28580.1 26.891 357 202 13 18 337 26 360 1.71e-23 101
Msa0194370 AT1G75920.4 29.787 282 179 10 58 330 25 296 1.78e-23 99.8
Msa0194370 AT1G53940.1 30.522 249 149 11 33 270 39 274 8.13e-23 97.8
Msa0194370 AT3G09930.2 26.984 315 193 13 34 330 40 335 2.16e-22 97.4
Msa0194370 AT3G09930.1 26.984 315 193 13 34 330 40 335 2.16e-22 97.4
Msa0194370 AT1G31550.2 27.019 359 196 15 13 331 20 352 5.18e-22 97.1
Msa0194370 AT1G31550.1 26.685 356 198 15 13 331 20 349 1.13e-21 95.9
Msa0194370 AT4G16220.1 47.059 119 56 5 1 117 1 114 2.59e-21 92.4
Msa0194370 AT5G03600.2 25.937 347 206 14 10 332 20 339 3.57e-21 94.0
Msa0194370 AT1G54000.1 24.722 360 239 12 13 359 15 355 7.40e-21 93.6
Msa0194370 AT1G28590.1 26.944 360 208 14 13 337 20 359 7.90e-21 93.6
Msa0194370 AT5G03600.1 25.857 321 193 13 30 332 11 304 1.30e-20 92.0
Msa0194370 AT1G28650.1 26.776 366 218 16 4 331 1 354 2.50e-20 92.0
Msa0194370 AT5G14450.1 26.596 376 217 13 1 337 12 367 4.02e-20 91.3
Msa0194370 AT1G75920.3 27.545 334 189 13 6 330 4 293 1.05e-19 89.0
Msa0194370 AT3G14210.1 25.656 343 218 11 33 359 36 357 1.17e-19 90.1
Msa0194370 AT3G14220.1 25.882 340 221 13 32 359 31 351 7.97e-19 87.4
Msa0194370 AT1G54030.1 23.418 316 201 10 34 336 53 340 1.43e-18 87.0
Msa0194370 AT1G54010.1 23.373 338 228 10 34 359 37 355 1.50e-18 86.7
Msa0194370 AT3G27950.1 23.684 380 229 16 4 344 1 358 6.46e-18 84.7
Msa0194370 AT1G28670.1 26.099 364 221 17 1 331 5 353 1.70e-17 83.6
Msa0194370 AT1G67830.1 25.706 354 210 15 19 336 21 357 5.38e-17 82.0
Msa0194370 AT3G05180.1 23.529 340 214 10 32 337 35 362 6.58e-17 82.0
Msa0194370 AT1G54790.3 23.077 364 234 12 9 338 8 359 1.27e-16 80.9
Msa0194370 AT4G01130.1 24.798 371 227 14 11 344 13 368 1.44e-16 80.9
Msa0194370 AT1G09390.1 25.496 353 222 11 11 337 12 349 1.17e-15 78.2
Msa0194370 AT3G62280.1 25.501 349 212 14 29 352 32 357 1.97e-15 77.4
Msa0194370 AT1G54790.1 23.333 360 230 12 13 338 11 358 4.60e-15 76.3
Msa0194370 AT1G28610.1 31.217 189 112 8 1 180 4 183 9.12e-15 73.9
Msa0194370 AT4G16233.1 33.582 134 72 6 241 363 5 132 1.25e-14 70.9
Msa0194370 AT1G54030.2 23.504 234 150 8 33 261 52 261 2.09e-13 70.9
Msa0194370 AT1G28600.2 29.570 186 106 9 1 174 4 176 4.82e-13 68.2
Msa0194370 AT4G01130.2 28.750 240 145 10 11 239 13 237 4.86e-13 69.7
Msa0194370 AT2G31550.1 27.128 188 124 7 154 331 16 200 5.50e-13 68.2
Msa0194370 AT3G62280.2 26.996 263 160 10 29 278 32 275 9.10e-13 68.6
Msa0194370 AT1G54790.2 22.798 386 226 13 13 338 11 384 2.28e-12 68.2
Msa0194370 AT5G45910.1 25.959 339 207 15 34 338 31 359 8.04e-12 66.6
Msa0194370 AT3G14210.2 24.651 215 142 6 159 359 21 229 1.95e-11 64.3

Find 87 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCATTTGCAAACATTAA+TGG 0.145814 2_1:-10328604 Msa0194370:CDS
TTGATTGCAGCTCAGCTTCT+TGG 0.176755 2_1:-10328643 Msa0194370:intron
CACAATCCAACCGAGCTTAT+TGG 0.237913 2_1:+10327649 None:intergenic
TATGATTCATCTAATCATTC+AGG 0.238175 2_1:-10327526 Msa0194370:CDS
ATTGTTTATTAAGATGAATT+TGG 0.259704 2_1:+10327849 None:intergenic
GTTACCTGGGTTAGGCCTAT+TGG 0.266631 2_1:-10328007 Msa0194370:CDS
AGAGTTATCATTGAATTTAC+AGG 0.271393 2_1:-10328197 Msa0194370:intron
TGTTACTTGTTAGGTAGAAT+TGG 0.307669 2_1:+10328257 None:intergenic
GTTACTTGTTAGGTAGAATT+GGG 0.308314 2_1:+10328258 None:intergenic
ACAAGAAATTGAGATGGAAT+TGG 0.332949 2_1:-10327467 Msa0194370:CDS
TTACCTGGGTTAGGCCTATT+GGG 0.350116 2_1:-10328006 Msa0194370:CDS
ATGAAAGGCCATGCTCTAAT+AGG 0.367336 2_1:-10327618 Msa0194370:CDS
AACTATGCATCTGGCGGAGC+TGG 0.371338 2_1:-10328559 Msa0194370:CDS
TAAGGATTGTAATTTGATCT+TGG 0.373431 2_1:+10328844 None:intergenic
ATAGGAGGGAGTATGTGTTT+TGG 0.376746 2_1:-10327600 Msa0194370:CDS
GGCTGTAAGTGTTACTTGTT+AGG 0.382777 2_1:+10328248 None:intergenic
TAACAGGCTTTACATGATCT+TGG 0.383167 2_1:-10328045 Msa0194370:intron
CAGGGTTATGCTATTAGCTT+GGG 0.384820 2_1:-10328424 Msa0194370:CDS
TCGACCGTTGGTAAATCTTC+CGG 0.391397 2_1:+10328795 None:intergenic
ATCTTCCGGTTGGGCCCATC+GGG 0.403407 2_1:+10328809 None:intergenic
GACTTCCCGATGGGCCCAAC+CGG 0.405745 2_1:-10328814 Msa0194370:CDS
ATCCTTACTCATGAGACATA+TGG 0.416628 2_1:-10327967 Msa0194370:CDS
GATCAAATTACAATCCTTAC+GGG 0.423913 2_1:-10328840 Msa0194370:CDS
CTTACAAACAAGATAAGAAT+AGG 0.427206 2_1:+10328973 None:intergenic
AGAGATTCTGCATACTGCTC+AGG 0.428339 2_1:+10328226 None:intergenic
AGGTATTCAAAAGCTTTGTC+AGG 0.428848 2_1:+10328343 None:intergenic
TCAGGGTTATGCTATTAGCT+TGG 0.441334 2_1:-10328425 Msa0194370:intron
TTTGGAGATTCTTTATCTGA+TGG 0.449945 2_1:-10328898 Msa0194370:CDS
AGATCAAATTACAATCCTTA+CGG 0.450350 2_1:-10328841 Msa0194370:CDS
CGTTGGTAAATCTTCCGGTT+GGG 0.464773 2_1:+10328800 None:intergenic
ACCCATATGTCTCATGAGTA+AGG 0.468364 2_1:+10327965 None:intergenic
AATCTTCCGGTTGGGCCCAT+CGG 0.479670 2_1:+10328808 None:intergenic
CAGTCCATCCCGGCGAGGCT+TGG 0.480459 2_1:-10327573 Msa0194370:CDS
TCTCAAATTGCTAGCAGACT+TGG 0.481756 2_1:-10328370 Msa0194370:CDS
CATAATACAAGCATTTGTTA+AGG 0.485419 2_1:+10328323 None:intergenic
ACAAGGTGCTTAATATCCAT+TGG 0.485696 2_1:+10327493 None:intergenic
GTCAATTGTAGTTCGACCGT+TGG 0.487738 2_1:+10328783 None:intergenic
TCCTTACTCATGAGACATAT+GGG 0.490931 2_1:-10327966 Msa0194370:CDS
AAAGGTGTGAACTATGCATC+TGG 0.495068 2_1:-10328568 Msa0194370:CDS
TCAACTGCCGAGCATTCATA+TGG 0.495949 2_1:-10327817 Msa0194370:intron
AAATATGTGTTACCTGGGTT+AGG 0.497677 2_1:-10328015 Msa0194370:CDS
TGTTGTCCAATAAGCTCGGT+TGG 0.500248 2_1:-10327655 Msa0194370:CDS
ATGATTCATCTAATCATTCA+GGG 0.500283 2_1:-10327525 Msa0194370:CDS
TTTGATCTTGGAGAGTTAGC+AGG 0.500662 2_1:+10328856 None:intergenic
CACTTGGAGTGCAACCCAAT+AGG 0.503321 2_1:+10327992 None:intergenic
TCCTTGTTGTCCAATAAGCT+CGG 0.516114 2_1:-10327659 Msa0194370:CDS
GGTTCCAAGCCTCGCCGGGA+TGG 0.517773 2_1:+10327569 None:intergenic
TGCTTGTATTATGTGCATAT+AGG 0.519757 2_1:-10328313 Msa0194370:CDS
GAACCATTAATGTTTGCAAA+TGG 0.520949 2_1:+10328601 None:intergenic
TTCAGGGTTCGCTTATCCAA+TGG 0.529308 2_1:-10327509 Msa0194370:CDS
CCATTAATGTTTGCAAATGG+TGG 0.530450 2_1:+10328604 None:intergenic
GCAAGAAAATATGTGTTACC+TGG 0.530877 2_1:-10328021 Msa0194370:CDS
AGTAGGTTCCAAGCCTCGCC+GGG 0.532908 2_1:+10327565 None:intergenic
ATTATTACCATATGAATGCT+CGG 0.539271 2_1:+10327810 None:intergenic
CCGTTGGTAAATCTTCCGGT+TGG 0.540057 2_1:+10328799 None:intergenic
AATTCGAATGGAGACATACT+CGG 0.551240 2_1:-10328536 Msa0194370:CDS
AAAGGCCATGCTCTAATAGG+AGG 0.552345 2_1:-10327615 Msa0194370:CDS
TATTTGCAACAATGTGTCAA+TGG 0.553346 2_1:-10328949 Msa0194370:CDS
TACGGGATCGACTTCCCGAT+GGG 0.553446 2_1:-10328823 Msa0194370:CDS
AATGGAGACATACTCGGCTA+AGG 0.563484 2_1:-10328530 Msa0194370:intron
GAGTAGGTTCCAAGCCTCGC+CGG 0.564674 2_1:+10327564 None:intergenic
ATCGGGAAGTCGATCCCGTA+AGG 0.567459 2_1:+10328826 None:intergenic
GGAGATTCTTTATCTGATGG+TGG 0.571261 2_1:-10328895 Msa0194370:CDS
CAAGAAAATATGTGTTACCT+GGG 0.577135 2_1:-10328020 Msa0194370:CDS
TGGCGGAGCTGGAATTCGAA+TGG 0.584028 2_1:-10328548 Msa0194370:CDS
TGTTGAACAAGAAATTGAGA+TGG 0.584999 2_1:-10327473 Msa0194370:CDS
TCATGAGTAAGGATGGCACT+TGG 0.585430 2_1:+10327976 None:intergenic
TTACGGGATCGACTTCCCGA+TGG 0.593179 2_1:-10328824 Msa0194370:CDS
ATATGTCTCATGAGTAAGGA+TGG 0.596046 2_1:+10327969 None:intergenic
GAGATTCTGCATACTGCTCA+GGG 0.602712 2_1:+10328227 None:intergenic
GATTGTGTATTCGTGATGAA+AGG 0.604626 2_1:-10327633 Msa0194370:CDS
TTACTTGTTAGGTAGAATTG+GGG 0.608022 2_1:+10328259 None:intergenic
TACTCCCTCCTATTAGAGCA+TGG 0.611833 2_1:+10327610 None:intergenic
TTCTATGATAAAGACATGGT+TGG 0.621014 2_1:-10329001 Msa0194370:CDS
TCTCAATTTCTTGTTCAACA+AGG 0.626756 2_1:+10327476 None:intergenic
ACTTGAACATATTTAAGCAG+AGG 0.627899 2_1:+10327423 None:intergenic
GACATATGGGTCTTGTGTTG+AGG 0.634040 2_1:-10327953 Msa0194370:CDS
GGATGCAGTCCATCCCGGCG+AGG 0.639170 2_1:-10327578 Msa0194370:CDS
AATGGTTCAGACATACTCAA+AGG 0.644324 2_1:-10328586 Msa0194370:CDS
ACCGAGCTTATTGGACAACA+AGG 0.654970 2_1:+10327658 None:intergenic
ATCTTGGAGAGTTAGCAGGA+AGG 0.658959 2_1:+10328860 None:intergenic
AAGGCCATGCTCTAATAGGA+GGG 0.662836 2_1:-10327614 Msa0194370:CDS
ATGATGTTGTTGCAATGAGT+AGG 0.671130 2_1:+10327548 None:intergenic
GGTGTGAACTATGCATCTGG+CGG 0.691974 2_1:-10328565 Msa0194370:CDS
CAACCCAATAGGCCTAACCC+AGG 0.699377 2_1:+10328003 None:intergenic
TGGATTCTATGATAAAGACA+TGG 0.717804 2_1:-10329005 Msa0194370:CDS
CCAACCGGAAGATTTACCAA+CGG 0.762608 2_1:-10328799 Msa0194370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAATATTTATGAATATGA+TGG - chr2_1:10328347-10328366 Msa0194370:CDS 15.0%
!! ATTGTTTATTAAGATGAATT+TGG + chr2_1:10328595-10328614 None:intergenic 15.0%
!! TACAATATTTATGAATATGA+TGG - chr2_1:10328347-10328366 Msa0194370:CDS 15.0%
!! ATTGTTTATTAAGATGAATT+TGG + chr2_1:10328595-10328614 None:intergenic 15.0%
!! ACACTTAATGTTTCATAATA+TGG + chr2_1:10327711-10327730 None:intergenic 20.0%
!! TTTAAGCTTGAAATCAAAAA+TGG + chr2_1:10328532-10328551 None:intergenic 20.0%
!! ACACTTAATGTTTCATAATA+TGG + chr2_1:10327711-10327730 None:intergenic 20.0%
!! TTTAAGCTTGAAATCAAAAA+TGG + chr2_1:10328532-10328551 None:intergenic 20.0%
! CTTACAAACAAGATAAGAAT+AGG + chr2_1:10327471-10327490 None:intergenic 25.0%
! TAAGGATTGTAATTTGATCT+TGG + chr2_1:10327600-10327619 None:intergenic 25.0%
! AGATCAAATTACAATCCTTA+CGG - chr2_1:10327600-10327619 Msa0194370:CDS 25.0%
! TAAGCTGAATCAAAAGTTTA+AGG + chr2_1:10327759-10327778 None:intergenic 25.0%
!! TGGACATAATGTTAATTTTG+CGG + chr2_1:10327995-10328014 None:intergenic 25.0%
! AATTAACATTATGTCCATTC+AGG - chr2_1:10327998-10328017 Msa0194370:CDS 25.0%
! ATTAACATTATGTCCATTCA+GGG - chr2_1:10327999-10328018 Msa0194370:CDS 25.0%
!! CATAATACAAGCATTTGTTA+AGG + chr2_1:10328121-10328140 None:intergenic 25.0%
! AGAGTTATCATTGAATTTAC+AGG - chr2_1:10328244-10328263 Msa0194370:CDS 25.0%
! GTACAATAGTGGTATATTAA+TGG - chr2_1:10328320-10328339 Msa0194370:CDS 25.0%
!!! TGGTTTATAATAGAAGCATT+TGG - chr2_1:10328367-10328386 Msa0194370:CDS 25.0%
! ATTATTACCATATGAATGCT+CGG + chr2_1:10328634-10328653 None:intergenic 25.0%
! TATGATTCATCTAATCATTC+AGG - chr2_1:10328915-10328934 Msa0194370:CDS 25.0%
! ATGATTCATCTAATCATTCA+GGG - chr2_1:10328916-10328935 Msa0194370:CDS 25.0%
! CTTACAAACAAGATAAGAAT+AGG + chr2_1:10327471-10327490 None:intergenic 25.0%
! TAAGGATTGTAATTTGATCT+TGG + chr2_1:10327600-10327619 None:intergenic 25.0%
! AGATCAAATTACAATCCTTA+CGG - chr2_1:10327600-10327619 Msa0194370:CDS 25.0%
! TAAGCTGAATCAAAAGTTTA+AGG + chr2_1:10327759-10327778 None:intergenic 25.0%
!! TGGACATAATGTTAATTTTG+CGG + chr2_1:10327995-10328014 None:intergenic 25.0%
! AATTAACATTATGTCCATTC+AGG - chr2_1:10327998-10328017 Msa0194370:CDS 25.0%
! ATTAACATTATGTCCATTCA+GGG - chr2_1:10327999-10328018 Msa0194370:CDS 25.0%
!! CATAATACAAGCATTTGTTA+AGG + chr2_1:10328121-10328140 None:intergenic 25.0%
! AGAGTTATCATTGAATTTAC+AGG - chr2_1:10328244-10328263 Msa0194370:CDS 25.0%
! GTACAATAGTGGTATATTAA+TGG - chr2_1:10328320-10328339 Msa0194370:CDS 25.0%
!!! TGGTTTATAATAGAAGCATT+TGG - chr2_1:10328367-10328386 Msa0194370:CDS 25.0%
! ATTATTACCATATGAATGCT+CGG + chr2_1:10328634-10328653 None:intergenic 25.0%
! TATGATTCATCTAATCATTC+AGG - chr2_1:10328915-10328934 Msa0194370:CDS 25.0%
! ATGATTCATCTAATCATTCA+GGG - chr2_1:10328916-10328935 Msa0194370:CDS 25.0%
TGGATTCTATGATAAAGACA+TGG - chr2_1:10327436-10327455 Msa0194370:CDS 30.0%
TTCTATGATAAAGACATGGT+TGG - chr2_1:10327440-10327459 Msa0194370:CDS 30.0%
TATTTGCAACAATGTGTCAA+TGG - chr2_1:10327492-10327511 Msa0194370:CDS 30.0%
TCTCCAAAGATAAAAAGACA+AGG + chr2_1:10327531-10327550 None:intergenic 30.0%
TTTGGAGATTCTTTATCTGA+TGG - chr2_1:10327543-10327562 Msa0194370:CDS 30.0%
GATCAAATTACAATCCTTAC+GGG - chr2_1:10327601-10327620 Msa0194370:CDS 30.0%
GAACCATTAATGTTTGCAAA+TGG + chr2_1:10327843-10327862 None:intergenic 30.0%
TGCTTGTATTATGTGCATAT+AGG - chr2_1:10328128-10328147 Msa0194370:intron 30.0%
! TTACTTGTTAGGTAGAATTG+GGG + chr2_1:10328185-10328204 None:intergenic 30.0%
! GTTACTTGTTAGGTAGAATT+GGG + chr2_1:10328186-10328205 None:intergenic 30.0%
! TGTTACTTGTTAGGTAGAAT+TGG + chr2_1:10328187-10328206 None:intergenic 30.0%
GACTTTGATAAGTACAATAG+TGG - chr2_1:10328309-10328328 Msa0194370:CDS 30.0%
AAGCATTTGGTATATGTAAC+AGG - chr2_1:10328380-10328399 Msa0194370:CDS 30.0%
CAAGAAAATATGTGTTACCT+GGG - chr2_1:10328421-10328440 Msa0194370:CDS 30.0%
! TCAATGAATCTCAGGTTTTT+CGG - chr2_1:10328749-10328768 Msa0194370:intron 30.0%
TCTCAATTTCTTGTTCAACA+AGG + chr2_1:10328968-10328987 None:intergenic 30.0%
TGTTGAACAAGAAATTGAGA+TGG - chr2_1:10328968-10328987 Msa0194370:CDS 30.0%
ACAAGAAATTGAGATGGAAT+TGG - chr2_1:10328974-10328993 Msa0194370:CDS 30.0%
TGGATTCTATGATAAAGACA+TGG - chr2_1:10327436-10327455 Msa0194370:CDS 30.0%
TTCTATGATAAAGACATGGT+TGG - chr2_1:10327440-10327459 Msa0194370:CDS 30.0%
TATTTGCAACAATGTGTCAA+TGG - chr2_1:10327492-10327511 Msa0194370:CDS 30.0%
TCTCCAAAGATAAAAAGACA+AGG + chr2_1:10327531-10327550 None:intergenic 30.0%
TTTGGAGATTCTTTATCTGA+TGG - chr2_1:10327543-10327562 Msa0194370:CDS 30.0%
GATCAAATTACAATCCTTAC+GGG - chr2_1:10327601-10327620 Msa0194370:CDS 30.0%
GAACCATTAATGTTTGCAAA+TGG + chr2_1:10327843-10327862 None:intergenic 30.0%
TGCTTGTATTATGTGCATAT+AGG - chr2_1:10328128-10328147 Msa0194370:intron 30.0%
! TTACTTGTTAGGTAGAATTG+GGG + chr2_1:10328185-10328204 None:intergenic 30.0%
! GTTACTTGTTAGGTAGAATT+GGG + chr2_1:10328186-10328205 None:intergenic 30.0%
! TGTTACTTGTTAGGTAGAAT+TGG + chr2_1:10328187-10328206 None:intergenic 30.0%
GACTTTGATAAGTACAATAG+TGG - chr2_1:10328309-10328328 Msa0194370:CDS 30.0%
AAGCATTTGGTATATGTAAC+AGG - chr2_1:10328380-10328399 Msa0194370:CDS 30.0%
CAAGAAAATATGTGTTACCT+GGG - chr2_1:10328421-10328440 Msa0194370:CDS 30.0%
! TCAATGAATCTCAGGTTTTT+CGG - chr2_1:10328749-10328768 Msa0194370:intron 30.0%
TCTCAATTTCTTGTTCAACA+AGG + chr2_1:10328968-10328987 None:intergenic 30.0%
TGTTGAACAAGAAATTGAGA+TGG - chr2_1:10328968-10328987 Msa0194370:CDS 30.0%
ACAAGAAATTGAGATGGAAT+TGG - chr2_1:10328974-10328993 Msa0194370:CDS 30.0%
! GATAAAAAGACAAGGCACTT+GGG + chr2_1:10327523-10327542 None:intergenic 35.0%
! AGATAAAAAGACAAGGCACT+TGG + chr2_1:10327524-10327543 None:intergenic 35.0%
! GTGCCTTGTCTTTTTATCTT+TGG - chr2_1:10327525-10327544 Msa0194370:CDS 35.0%
CCATTAATGTTTGCAAATGG+TGG + chr2_1:10327840-10327859 None:intergenic 35.0%
CCACCATTTGCAAACATTAA+TGG - chr2_1:10327837-10327856 Msa0194370:CDS 35.0%
AATGGTTCAGACATACTCAA+AGG - chr2_1:10327855-10327874 Msa0194370:CDS 35.0%
AATTCGAATGGAGACATACT+CGG - chr2_1:10327905-10327924 Msa0194370:CDS 35.0%
! AGGTATTCAAAAGCTTTGTC+AGG + chr2_1:10328101-10328120 None:intergenic 35.0%
AGTGAAACACAAAGTTCAAG+TGG + chr2_1:10328273-10328292 None:intergenic 35.0%
TAACAGGCTTTACATGATCT+TGG - chr2_1:10328396-10328415 Msa0194370:CDS 35.0%
GCAAGAAAATATGTGTTACC+TGG - chr2_1:10328420-10328439 Msa0194370:CDS 35.0%
AAATATGTGTTACCTGGGTT+AGG - chr2_1:10328426-10328445 Msa0194370:intron 35.0%
ATATGTCTCATGAGTAAGGA+TGG + chr2_1:10328475-10328494 None:intergenic 35.0%
ATCCTTACTCATGAGACATA+TGG - chr2_1:10328474-10328493 Msa0194370:intron 35.0%
TCCTTACTCATGAGACATAT+GGG - chr2_1:10328475-10328494 Msa0194370:intron 35.0%
CAGTTTAATGTGATTGATCG+AGG - chr2_1:10328697-10328716 Msa0194370:intron 35.0%
CTGCATATTCAATGAATCTC+AGG - chr2_1:10328741-10328760 Msa0194370:intron 35.0%
GATTGTGTATTCGTGATGAA+AGG - chr2_1:10328808-10328827 Msa0194370:CDS 35.0%
ATGATGTTGTTGCAATGAGT+AGG + chr2_1:10328896-10328915 None:intergenic 35.0%
! ACAAGGTGCTTAATATCCAT+TGG + chr2_1:10328951-10328970 None:intergenic 35.0%
! GATAAAAAGACAAGGCACTT+GGG + chr2_1:10327523-10327542 None:intergenic 35.0%
! AGATAAAAAGACAAGGCACT+TGG + chr2_1:10327524-10327543 None:intergenic 35.0%
! GTGCCTTGTCTTTTTATCTT+TGG - chr2_1:10327525-10327544 Msa0194370:CDS 35.0%
CCATTAATGTTTGCAAATGG+TGG + chr2_1:10327840-10327859 None:intergenic 35.0%
CCACCATTTGCAAACATTAA+TGG - chr2_1:10327837-10327856 Msa0194370:CDS 35.0%
AATGGTTCAGACATACTCAA+AGG - chr2_1:10327855-10327874 Msa0194370:CDS 35.0%
AATTCGAATGGAGACATACT+CGG - chr2_1:10327905-10327924 Msa0194370:CDS 35.0%
! AGGTATTCAAAAGCTTTGTC+AGG + chr2_1:10328101-10328120 None:intergenic 35.0%
AGTGAAACACAAAGTTCAAG+TGG + chr2_1:10328273-10328292 None:intergenic 35.0%
TAACAGGCTTTACATGATCT+TGG - chr2_1:10328396-10328415 Msa0194370:CDS 35.0%
GCAAGAAAATATGTGTTACC+TGG - chr2_1:10328420-10328439 Msa0194370:CDS 35.0%
AAATATGTGTTACCTGGGTT+AGG - chr2_1:10328426-10328445 Msa0194370:intron 35.0%
ATATGTCTCATGAGTAAGGA+TGG + chr2_1:10328475-10328494 None:intergenic 35.0%
ATCCTTACTCATGAGACATA+TGG - chr2_1:10328474-10328493 Msa0194370:intron 35.0%
TCCTTACTCATGAGACATAT+GGG - chr2_1:10328475-10328494 Msa0194370:intron 35.0%
CAGTTTAATGTGATTGATCG+AGG - chr2_1:10328697-10328716 Msa0194370:intron 35.0%
CTGCATATTCAATGAATCTC+AGG - chr2_1:10328741-10328760 Msa0194370:intron 35.0%
GATTGTGTATTCGTGATGAA+AGG - chr2_1:10328808-10328827 Msa0194370:CDS 35.0%
ATGATGTTGTTGCAATGAGT+AGG + chr2_1:10328896-10328915 None:intergenic 35.0%
! ACAAGGTGCTTAATATCCAT+TGG + chr2_1:10328951-10328970 None:intergenic 35.0%
GGAGATTCTTTATCTGATGG+TGG - chr2_1:10327546-10327565 Msa0194370:CDS 40.0%
TTTGATCTTGGAGAGTTAGC+AGG + chr2_1:10327588-10327607 None:intergenic 40.0%
! AAAGGTGTGAACTATGCATC+TGG - chr2_1:10327873-10327892 Msa0194370:CDS 40.0%
GCTAATAGCATAACCCTGAA+TGG + chr2_1:10328015-10328034 None:intergenic 40.0%
TCAGGGTTATGCTATTAGCT+TGG - chr2_1:10328016-10328035 Msa0194370:CDS 40.0%
! CAGGGTTATGCTATTAGCTT+GGG - chr2_1:10328017-10328036 Msa0194370:CDS 40.0%
TCTCAAATTGCTAGCAGACT+TGG - chr2_1:10328071-10328090 Msa0194370:intron 40.0%
!! GGCTGTAAGTGTTACTTGTT+AGG + chr2_1:10328196-10328215 None:intergenic 40.0%
ACCCATATGTCTCATGAGTA+AGG + chr2_1:10328479-10328498 None:intergenic 40.0%
!! CTCAGGTTTTTCGGTTTCAA+TGG - chr2_1:10328758-10328777 Msa0194370:intron 40.0%
! TCCTTGTTGTCCAATAAGCT+CGG - chr2_1:10328782-10328801 Msa0194370:CDS 40.0%
ATGAAAGGCCATGCTCTAAT+AGG - chr2_1:10328823-10328842 Msa0194370:CDS 40.0%
!! ATAGGAGGGAGTATGTGTTT+TGG - chr2_1:10328841-10328860 Msa0194370:CDS 40.0%
!! TAGGAGGGAGTATGTGTTTT+GGG - chr2_1:10328842-10328861 Msa0194370:CDS 40.0%
GGAGATTCTTTATCTGATGG+TGG - chr2_1:10327546-10327565 Msa0194370:CDS 40.0%
TTTGATCTTGGAGAGTTAGC+AGG + chr2_1:10327588-10327607 None:intergenic 40.0%
! AAAGGTGTGAACTATGCATC+TGG - chr2_1:10327873-10327892 Msa0194370:CDS 40.0%
GCTAATAGCATAACCCTGAA+TGG + chr2_1:10328015-10328034 None:intergenic 40.0%
TCAGGGTTATGCTATTAGCT+TGG - chr2_1:10328016-10328035 Msa0194370:CDS 40.0%
! CAGGGTTATGCTATTAGCTT+GGG - chr2_1:10328017-10328036 Msa0194370:CDS 40.0%
TCTCAAATTGCTAGCAGACT+TGG - chr2_1:10328071-10328090 Msa0194370:intron 40.0%
!! GGCTGTAAGTGTTACTTGTT+AGG + chr2_1:10328196-10328215 None:intergenic 40.0%
ACCCATATGTCTCATGAGTA+AGG + chr2_1:10328479-10328498 None:intergenic 40.0%
!! CTCAGGTTTTTCGGTTTCAA+TGG - chr2_1:10328758-10328777 Msa0194370:intron 40.0%
! TCCTTGTTGTCCAATAAGCT+CGG - chr2_1:10328782-10328801 Msa0194370:CDS 40.0%
ATGAAAGGCCATGCTCTAAT+AGG - chr2_1:10328823-10328842 Msa0194370:CDS 40.0%
!! ATAGGAGGGAGTATGTGTTT+TGG - chr2_1:10328841-10328860 Msa0194370:CDS 40.0%
!! TAGGAGGGAGTATGTGTTTT+GGG - chr2_1:10328842-10328861 Msa0194370:CDS 40.0%
ATCTTGGAGAGTTAGCAGGA+AGG + chr2_1:10327584-10327603 None:intergenic 45.0%
! CGTTGGTAAATCTTCCGGTT+GGG + chr2_1:10327644-10327663 None:intergenic 45.0%
CCAACCGGAAGATTTACCAA+CGG - chr2_1:10327642-10327661 Msa0194370:CDS 45.0%
! TCGACCGTTGGTAAATCTTC+CGG + chr2_1:10327649-10327668 None:intergenic 45.0%
GTCAATTGTAGTTCGACCGT+TGG + chr2_1:10327661-10327680 None:intergenic 45.0%
TTGATTGCAGCTCAGCTTCT+TGG - chr2_1:10327798-10327817 Msa0194370:intron 45.0%
AATGGAGACATACTCGGCTA+AGG - chr2_1:10327911-10327930 Msa0194370:CDS 45.0%
GAGATTCTGCATACTGCTCA+GGG + chr2_1:10328217-10328236 None:intergenic 45.0%
AGAGATTCTGCATACTGCTC+AGG + chr2_1:10328218-10328237 None:intergenic 45.0%
! TTACCTGGGTTAGGCCTATT+GGG - chr2_1:10328435-10328454 Msa0194370:intron 45.0%
TCATGAGTAAGGATGGCACT+TGG + chr2_1:10328468-10328487 None:intergenic 45.0%
! GACATATGGGTCTTGTGTTG+AGG - chr2_1:10328488-10328507 Msa0194370:intron 45.0%
TCAACTGCCGAGCATTCATA+TGG - chr2_1:10328624-10328643 Msa0194370:CDS 45.0%
ACCGAGCTTATTGGACAACA+AGG + chr2_1:10328786-10328805 None:intergenic 45.0%
TGTTGTCCAATAAGCTCGGT+TGG - chr2_1:10328786-10328805 Msa0194370:CDS 45.0%
CACAATCCAACCGAGCTTAT+TGG + chr2_1:10328795-10328814 None:intergenic 45.0%
AAAGGCCATGCTCTAATAGG+AGG - chr2_1:10328826-10328845 Msa0194370:CDS 45.0%
AAGGCCATGCTCTAATAGGA+GGG - chr2_1:10328827-10328846 Msa0194370:CDS 45.0%
TACTCCCTCCTATTAGAGCA+TGG + chr2_1:10328834-10328853 None:intergenic 45.0%
TTCAGGGTTCGCTTATCCAA+TGG - chr2_1:10328932-10328951 Msa0194370:CDS 45.0%
ATCTTGGAGAGTTAGCAGGA+AGG + chr2_1:10327584-10327603 None:intergenic 45.0%
! CGTTGGTAAATCTTCCGGTT+GGG + chr2_1:10327644-10327663 None:intergenic 45.0%
CCAACCGGAAGATTTACCAA+CGG - chr2_1:10327642-10327661 Msa0194370:CDS 45.0%
! TCGACCGTTGGTAAATCTTC+CGG + chr2_1:10327649-10327668 None:intergenic 45.0%
GTCAATTGTAGTTCGACCGT+TGG + chr2_1:10327661-10327680 None:intergenic 45.0%
TTGATTGCAGCTCAGCTTCT+TGG - chr2_1:10327798-10327817 Msa0194370:intron 45.0%
AATGGAGACATACTCGGCTA+AGG - chr2_1:10327911-10327930 Msa0194370:CDS 45.0%
GAGATTCTGCATACTGCTCA+GGG + chr2_1:10328217-10328236 None:intergenic 45.0%
AGAGATTCTGCATACTGCTC+AGG + chr2_1:10328218-10328237 None:intergenic 45.0%
! TTACCTGGGTTAGGCCTATT+GGG - chr2_1:10328435-10328454 Msa0194370:intron 45.0%
TCATGAGTAAGGATGGCACT+TGG + chr2_1:10328468-10328487 None:intergenic 45.0%
! GACATATGGGTCTTGTGTTG+AGG - chr2_1:10328488-10328507 Msa0194370:intron 45.0%
TCAACTGCCGAGCATTCATA+TGG - chr2_1:10328624-10328643 Msa0194370:CDS 45.0%
ACCGAGCTTATTGGACAACA+AGG + chr2_1:10328786-10328805 None:intergenic 45.0%
TGTTGTCCAATAAGCTCGGT+TGG - chr2_1:10328786-10328805 Msa0194370:CDS 45.0%
CACAATCCAACCGAGCTTAT+TGG + chr2_1:10328795-10328814 None:intergenic 45.0%
AAAGGCCATGCTCTAATAGG+AGG - chr2_1:10328826-10328845 Msa0194370:CDS 45.0%
AAGGCCATGCTCTAATAGGA+GGG - chr2_1:10328827-10328846 Msa0194370:CDS 45.0%
TACTCCCTCCTATTAGAGCA+TGG + chr2_1:10328834-10328853 None:intergenic 45.0%
TTCAGGGTTCGCTTATCCAA+TGG - chr2_1:10328932-10328951 Msa0194370:CDS 45.0%
! CCGTTGGTAAATCTTCCGGT+TGG + chr2_1:10327645-10327664 None:intergenic 50.0%
GGTGTGAACTATGCATCTGG+CGG - chr2_1:10327876-10327895 Msa0194370:CDS 50.0%
! GTTACCTGGGTTAGGCCTAT+TGG - chr2_1:10328434-10328453 Msa0194370:intron 50.0%
CACTTGGAGTGCAACCCAAT+AGG + chr2_1:10328452-10328471 None:intergenic 50.0%
!!! TTTTGGGATGCAGTCCATCC+CGG - chr2_1:10328858-10328877 Msa0194370:CDS 50.0%
! CCGTTGGTAAATCTTCCGGT+TGG + chr2_1:10327645-10327664 None:intergenic 50.0%
GGTGTGAACTATGCATCTGG+CGG - chr2_1:10327876-10327895 Msa0194370:CDS 50.0%
! GTTACCTGGGTTAGGCCTAT+TGG - chr2_1:10328434-10328453 Msa0194370:intron 50.0%
CACTTGGAGTGCAACCCAAT+AGG + chr2_1:10328452-10328471 None:intergenic 50.0%
!!! TTTTGGGATGCAGTCCATCC+CGG - chr2_1:10328858-10328877 Msa0194370:CDS 50.0%
ATCGGGAAGTCGATCCCGTA+AGG + chr2_1:10327618-10327637 None:intergenic 55.0%
! TTACGGGATCGACTTCCCGA+TGG - chr2_1:10327617-10327636 Msa0194370:CDS 55.0%
! TACGGGATCGACTTCCCGAT+GGG - chr2_1:10327618-10327637 Msa0194370:CDS 55.0%
AATCTTCCGGTTGGGCCCAT+CGG + chr2_1:10327636-10327655 None:intergenic 55.0%
AACTATGCATCTGGCGGAGC+TGG - chr2_1:10327882-10327901 Msa0194370:CDS 55.0%
TGGCGGAGCTGGAATTCGAA+TGG - chr2_1:10327893-10327912 Msa0194370:CDS 55.0%
CAACCCAATAGGCCTAACCC+AGG + chr2_1:10328441-10328460 None:intergenic 55.0%
ATCGGGAAGTCGATCCCGTA+AGG + chr2_1:10327618-10327637 None:intergenic 55.0%
! TTACGGGATCGACTTCCCGA+TGG - chr2_1:10327617-10327636 Msa0194370:CDS 55.0%
! TACGGGATCGACTTCCCGAT+GGG - chr2_1:10327618-10327637 Msa0194370:CDS 55.0%
AATCTTCCGGTTGGGCCCAT+CGG + chr2_1:10327636-10327655 None:intergenic 55.0%
AACTATGCATCTGGCGGAGC+TGG - chr2_1:10327882-10327901 Msa0194370:CDS 55.0%
TGGCGGAGCTGGAATTCGAA+TGG - chr2_1:10327893-10327912 Msa0194370:CDS 55.0%
CAACCCAATAGGCCTAACCC+AGG + chr2_1:10328441-10328460 None:intergenic 55.0%
ATCTTCCGGTTGGGCCCATC+GGG + chr2_1:10327635-10327654 None:intergenic 60.0%
AGTAGGTTCCAAGCCTCGCC+GGG + chr2_1:10328879-10328898 None:intergenic 60.0%
GAGTAGGTTCCAAGCCTCGC+CGG + chr2_1:10328880-10328899 None:intergenic 60.0%
ATCTTCCGGTTGGGCCCATC+GGG + chr2_1:10327635-10327654 None:intergenic 60.0%
AGTAGGTTCCAAGCCTCGCC+GGG + chr2_1:10328879-10328898 None:intergenic 60.0%
GAGTAGGTTCCAAGCCTCGC+CGG + chr2_1:10328880-10328899 None:intergenic 60.0%
GACTTCCCGATGGGCCCAAC+CGG - chr2_1:10327627-10327646 Msa0194370:CDS 65.0%
GACTTCCCGATGGGCCCAAC+CGG - chr2_1:10327627-10327646 Msa0194370:CDS 65.0%
GGATGCAGTCCATCCCGGCG+AGG - chr2_1:10328863-10328882 Msa0194370:CDS 70.0%
CAGTCCATCCCGGCGAGGCT+TGG - chr2_1:10328868-10328887 Msa0194370:CDS 70.0%
GGTTCCAAGCCTCGCCGGGA+TGG + chr2_1:10328875-10328894 None:intergenic 70.0%
GGATGCAGTCCATCCCGGCG+AGG - chr2_1:10328863-10328882 Msa0194370:CDS 70.0%
CAGTCCATCCCGGCGAGGCT+TGG - chr2_1:10328868-10328887 Msa0194370:CDS 70.0%
GGTTCCAAGCCTCGCCGGGA+TGG + chr2_1:10328875-10328894 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 10327435 10329028 10327435 ID=Msa0194370;Name=Msa0194370
chr2_1 mRNA 10327435 10329028 10327435 ID=Msa0194370-mRNA-1;Parent=Msa0194370;Name=Msa0194370-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|5|0|377
chr2_1 exon 10328776 10329028 10328776 ID=Msa0194370-mRNA-1:exon:4688;Parent=Msa0194370-mRNA-1
chr2_1 exon 10328531 10328655 10328531 ID=Msa0194370-mRNA-1:exon:4687;Parent=Msa0194370-mRNA-1
chr2_1 exon 10328198 10328443 10328198 ID=Msa0194370-mRNA-1:exon:4686;Parent=Msa0194370-mRNA-1
chr2_1 exon 10327818 10328061 10327818 ID=Msa0194370-mRNA-1:exon:4685;Parent=Msa0194370-mRNA-1
chr2_1 exon 10327435 10327700 10327435 ID=Msa0194370-mRNA-1:exon:4684;Parent=Msa0194370-mRNA-1
chr2_1 CDS 10328776 10329028 10328776 ID=Msa0194370-mRNA-1:cds;Parent=Msa0194370-mRNA-1
chr2_1 CDS 10328531 10328655 10328531 ID=Msa0194370-mRNA-1:cds;Parent=Msa0194370-mRNA-1
chr2_1 CDS 10328198 10328443 10328198 ID=Msa0194370-mRNA-1:cds;Parent=Msa0194370-mRNA-1
chr2_1 CDS 10327818 10328061 10327818 ID=Msa0194370-mRNA-1:cds;Parent=Msa0194370-mRNA-1
chr2_1 CDS 10327435 10327700 10327435 ID=Msa0194370-mRNA-1:cds;Parent=Msa0194370-mRNA-1
Gene Sequence

>Msa0194370

ATGGATTCTATGATAAAGACATGGTTGGTGTTGCCTATTCTTATCTTGTTTGTAAGCTATTTGCAACAATGTGTCAATGGAAAATCCCAAGTGCCTTGTCTTTTTATCTTTGGAGATTCTTTATCTGATGGTGGAAACAACAACAACCTTCCTGCTAACTCTCCAAGATCAAATTACAATCCTTACGGGATCGACTTCCCGATGGGCCCAACCGGAAGATTTACCAACGGTCGAACTACAATTGACATAATAACTCAGCTTCTTGGTTTTGAGAACTTCATTCCACCATTTGCAAACATTAATGGTTCAGACATACTCAAAGGTGTGAACTATGCATCTGGCGGAGCTGGAATTCGAATGGAGACATACTCGGCTAAGGGTTATGCTATTAGCTTGGGATTGCAGTTAAGAAATCACAGAGTTATAGTTTCTCAAATTGCTAGCAGACTTGGACGTCCTGACAAAGCTTTTGAATACCTTAACAAATGCTTGTATTATGTGCATATAGGCAGTAATGATTACATAAATAATTACTTTCTTCCCCAATTCTACCTAACAAGTAACACTTACAGCCCTGAGCAGTATGCAGAATCTCTAATTGAAGAGTTATCATTGAATTTACAGGCTTTACATGATCTTGGAGCAAGAAAATATGTGTTACCTGGGTTAGGCCTATTGGGTTGCACTCCAAGTGCCATCCTTACTCATGAGACATATGGGTCTTGTGTTGAGGAGCAAAATGACATTGCATCCATTTTTGATTTCAAGCTTAAATCTTTAGTAGATCACTTCAATAATAAGTTCTCTGCTGATTCCAAATTCATCTTAATAAACAATACATTACAGTCAACTGCCGAGCATTCATATGGTTTTTCGGTTTCAATGGCTCCTTGTTGTCCAATAAGCTCGGTTGGATTGTGTATTCGTGATGAAAGGCCATGCTCTAATAGGAGGGAGTATGTGTTTTGGGATGCAGTCCATCCCGGCGAGGCTTGGAACCTACTCATTGCAACAACATCATATGATTCATCTAATCATTCAGGGTTCGCTTATCCAATGGATATTAAGCACCTTGTTGAACAAGAAATTGAGATGGAATTGGATTTCACTTCACAGCTTAGTGCCTCTGCTTAA

Protein sequence

>Msa0194370

MDSMIKTWLVLPILILFVSYLQQCVNGKSQVPCLFIFGDSLSDGGNNNNLPANSPRSNYNPYGIDFPMGPTGRFTNGRTTIDIITQLLGFENFIPPFANINGSDILKGVNYASGGAGIRMETYSAKGYAISLGLQLRNHRVIVSQIASRLGRPDKAFEYLNKCLYYVHIGSNDYINNYFLPQFYLTSNTYSPEQYAESLIEELSLNLQALHDLGARKYVLPGLGLLGCTPSAILTHETYGSCVEEQNDIASIFDFKLKSLVDHFNNKFSADSKFILINNTLQSTAEHSYGFSVSMAPCCPISSVGLCIRDERPCSNRREYVFWDAVHPGEAWNLLIATTSYDSSNHSGFAYPMDIKHLVEQEIEMELDFTSQLSASA*