AlfalfaGEDB | Msa0639260

M. sativa cultivar zhongmu-4 / Msa0639260

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805
PFAM: PF00350.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639260	XP_013457218.1	96.574	759	5	1	1	738	1	759	0.0	1509

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639260	sp\|Q84N64\|ARC5_ARATH	76.996	739	149	1	15	732	23	761	0.0	1164

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030710	Msa0639260	0.801660	8.109972e-49	-8.615850e-47
Msa0033970	Msa0639260	-0.841336	5.054393e-58	-8.615850e-47
Msa0038910	Msa0639260	0.819256	1.277628e-52	-8.615850e-47
Msa0047210	Msa0639260	-0.805522	1.281687e-49	-8.615850e-47
Msa0053680	Msa0639260	0.832234	1.061860e-55	-8.615850e-47
Msa0078110	Msa0639260	0.833268	5.879426e-56	-8.615850e-47
Msa0081920	Msa0639260	-0.829784	4.239868e-55	-8.615850e-47
Msa0084330	Msa0639260	0.800685	1.283652e-48	-8.615850e-47
Msa0099300	Msa0639260	0.827857	1.240614e-54	-8.615850e-47
Msa0128030	Msa0639260	-0.838855	2.243990e-57	-8.615850e-47

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639260	MtrunA17_Chr4g0050661	96.574	759	5	1	1	738	1	759	0.0	1509
Msa0639260	MtrunA17_Chr8g0360401	31.626	449	262	10	21	442	27	457	9.01e-55	202
Msa0639260	MtrunA17_Chr8g0391891	28.649	185	106	6	41	205	36	214	3.74e-11	66.6

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639260	AT3G19720.1	76.996	739	149	1	15	732	23	761	0.0	1164
Msa0639260	AT3G19720.2	75.372	739	125	2	15	732	23	725	0.0	1129
Msa0639260	AT3G19720.3	71.742	775	126	4	15	732	23	761	0.0	1104
Msa0639260	AT1G53140.1	29.204	565	345	15	21	549	43	588	1.30e-56	207

Showing 1 to 4 of 4 entries

Previous1Next

Find 206 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGTGAGTATCTAAG+TGG	0.591421	4_3:+34918620	Msa0639260:CDS
AAATAGGGCAATACAGGCAC+AGG	0.587978	4_3:+34915180	Msa0639260:CDS
AAATTGATCCTGAATTGTCA+AGG	0.631423	4_3:+34915317	Msa0639260:CDS
AACATTACATGTAAATTGAA+GGG	0.554472	4_3:+34920671	Msa0639260:three_prime_UTR
AACCTGTTTGAAATCATCAT+TGG	0.384824	4_3:-34915521	None:intergenic
AACTTACCAAACTTATCAGG+AGG	0.646410	4_3:-34917069	None:intergenic
AAGACAAAGAAGAAAACGAG+TGG	0.685207	4_3:+34914520	Msa0639260:CDS
AAGACGGAGACTCGCAATGA+GGG	0.598166	4_3:-34914743	None:intergenic
AAGCAAGAAAGAAGTAGGAT+AGG	0.516003	4_3:+34916298	Msa0639260:CDS
AAGCATTTACAATTTCTTCC+CGG	0.417927	4_3:-34917677	None:intergenic

Showing 1 to 10 of 206 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTAGATAAGGAAAGGACTT+TGG	-	chr4_3:34914435-34914454	None:intergenic	30.0%
TTACAATATTCCTGCATGTT+TGG	+	chr4_3:34914853-34914872	Msa0639260:intron	30.0%
TGATTGTGAATGTAAATGTG+AGG	+	chr4_3:34914911-34914930	Msa0639260:intron	30.0%
GATTGTGAATGTAAATGTGA+GGG	+	chr4_3:34914912-34914931	Msa0639260:intron	30.0%
AAAATTGTGAGGACCAAAAT+GGG	+	chr4_3:34914953-34914972	Msa0639260:intron	30.0%
AAATTGATCCTGAATTGTCA+AGG	+	chr4_3:34915317-34915336	Msa0639260:CDS	30.0%
TGATTCTCCATTCTTTACTT+CGG	+	chr4_3:34915453-34915472	Msa0639260:CDS	30.0%
TAAAACAAGACAACGTGTAT+TGG	-	chr4_3:34915696-34915715	None:intergenic	30.0%
TGGTTAATTTATCAAGGGTA+GGG	+	chr4_3:34915888-34915907	Msa0639260:intron	30.0%
GATCTATTTAGCTGTACTTA+TGG	+	chr4_3:34916203-34916222	Msa0639260:intron	30.0%

Showing 1 to 10 of 451 entries

Previous1 2 3 4 5…46Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	34914357	34920921	34914357	ID=Msa0639260;Name=Msa0639260
chr4_3	mRNA	34914357	34920921	34914357	ID=Msa0639260-mRNA-1;Parent=Msa0639260;Name=Msa0639260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=132\|0.92\|0.93\|1\|0.92\|0.93\|15\|283\|738
chr4_3	exon	34914357	34914827	34914357	ID=Msa0639260-mRNA-1:exon:8175;Parent=Msa0639260-mRNA-1
chr4_3	exon	34915091	34915540	34915091	ID=Msa0639260-mRNA-1:exon:8176;Parent=Msa0639260-mRNA-1
chr4_3	exon	34916232	34916365	34916232	ID=Msa0639260-mRNA-1:exon:8177;Parent=Msa0639260-mRNA-1
chr4_3	exon	34916473	34916565	34916473	ID=Msa0639260-mRNA-1:exon:8178;Parent=Msa0639260-mRNA-1
chr4_3	exon	34916708	34916771	34916708	ID=Msa0639260-mRNA-1:exon:8179;Parent=Msa0639260-mRNA-1
chr4_3	exon	34917036	34917084	34917036	ID=Msa0639260-mRNA-1:exon:8180;Parent=Msa0639260-mRNA-1
chr4_3	exon	34917236	34917318	34917236	ID=Msa0639260-mRNA-1:exon:8181;Parent=Msa0639260-mRNA-1
chr4_3	exon	34917582	34917739	34917582	ID=Msa0639260-mRNA-1:exon:8182;Parent=Msa0639260-mRNA-1
chr4_3	exon	34917827	34917887	34917827	ID=Msa0639260-mRNA-1:exon:8183;Parent=Msa0639260-mRNA-1
chr4_3	exon	34918157	34918219	34918157	ID=Msa0639260-mRNA-1:exon:8184;Parent=Msa0639260-mRNA-1
chr4_3	exon	34918620	34918720	34918620	ID=Msa0639260-mRNA-1:exon:8185;Parent=Msa0639260-mRNA-1
chr4_3	exon	34918949	34919006	34918949	ID=Msa0639260-mRNA-1:exon:8186;Parent=Msa0639260-mRNA-1
chr4_3	exon	34919185	34919517	34919185	ID=Msa0639260-mRNA-1:exon:8187;Parent=Msa0639260-mRNA-1
chr4_3	exon	34920305	34920469	34920305	ID=Msa0639260-mRNA-1:exon:8188;Parent=Msa0639260-mRNA-1
chr4_3	exon	34920573	34920921	34920573	ID=Msa0639260-mRNA-1:exon:8189;Parent=Msa0639260-mRNA-1
chr4_3	five_prime_UTR	34914357	34914488	34914357	ID=Msa0639260-mRNA-1:five_prime_utr;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34914489	34914827	34914489	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34915091	34915540	34915091	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34916232	34916365	34916232	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34916473	34916565	34916473	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34916708	34916771	34916708	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34917036	34917084	34917036	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34917236	34917318	34917236	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34917582	34917739	34917582	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34917827	34917887	34917827	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34918157	34918219	34918157	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34918620	34918720	34918620	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34918949	34919006	34918949	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34919185	34919517	34919185	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34920305	34920469	34920305	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	CDS	34920573	34920638	34920573	ID=Msa0639260-mRNA-1:cds;Parent=Msa0639260-mRNA-1
chr4_3	three_prime_UTR	34920639	34920921	34920639	ID=Msa0639260-mRNA-1:three_prime_utr;Parent=Msa0639260-mRNA-1

Gene Sequence

>Msa0639260

ATGGAGGAAGAAACAGAGCACCACCAACTCCAAGACAAAGAAGAAAACGAGTGGCGTCTCTACGAAGCTTACAATGAACTTCACGCGCTTGCTCAAGAACTTCACACGCCTTTCGACGCGCCGGCTGTGCTGGTGGTGGGCCACCAAACAGACGGGAAGAGCGCCTTAGTTGAGGCTCTAATGGGCTTCCAGTTCAACCACGTCGGTGGTGGCACCAAAACCCGCCGGCCCATTACTCTTCATATGAAATATGGCCCTCATTGCGAGTCTCCGTCTTGTTATCTCCTCTCTGATGATGACCCTTCTCTTTCTCACCATATGTCCCTCTCCCAAATCCAGGAAATAATAATAAAAGTGGAATACAAATACTGTCCTAATCTCACCATAATAGACACACCAGGACTAGTTGCTCCTGCACCAGGTCGTAAAAATAGGGCAATACAGGCACAGGCACGAGCGGTAGAGTCACTCGTTCGTGCAAAAATGCAGCACAAGGAGTTCATTATACTCTGTCTTGAAGATTGTAGTGATTGGAGCAACGCAACTACCAGGCGCGTTGTAATGCAAATTGATCCTGAATTGTCAAGGACTGTGATTGTTTCGACTAAGTTGGATACTAGGATACCACAATTTTCACGTCCTTCTGATGTTGAAGTTTTCCTTTCGCCACCTGCGTCTACACTTGATGGATGCATTCTTGGTGATTCTCCATTCTTTACTTCGGTGCCTTCTGGAAGAGTTGGTTCTGGAACTCATTGTTTATACTCCTCCAATGATGATTTCAAACAGGCAGTAAGCTTCAGAGAGATAGAAGATGTTGCATCCTTGGAGGAGAAATTGGGAAGGCCATTGTCAAAGCAAGAAAGAAGTAGGATAGGTGTGAGCAAACTTAGGTTGTTTCTTGAAGAAATACTACAAAAGAGGTATATAAATAATGTACCATTGATCATTCCACTTCTTGAGAAGGAGCATCGGAGCGTGACAAGGAAATTGAGTGATATAAATCAAGAATTGAGCACACTGGATGAAGCCAAGTTGAAGGAGAAAGGAAGAGCTTTTCATGATATGTTCTTGACCAAGCTGTCATTGCTGCTTAAAGGGACAGTTGTCGCGCCTCCTGATAAGTTTGGTGAAACATTACCAGATGAGCGAATAAATGGAGGTGCATTTGTTGGTGCCGATGGTGTTCAGTTCCCTCACAAGCTAATACCTAATGCAGGGATGCGTCTTTATGGGGGTGCACAATATCATCGAGCAATGGCTGAATTTCGTTTTGTAGTTGGAGGAATCAAGTGCCCTCCAATTACCCGGGAAGAAATTGTAAATGCTTGTGGAGTTGAAGACATTCATGATGGAACAAACTACTCTAGGACTGCTTGTGTAATTGCTGTTGCAAAGGCTCATGATACATTTGAACCTTTTCTTCATCAGTTGGGGTCTAGATTGTTGCACATACTTAAGAGATTGCTCCCAATCTCTTTTTATCTTCTTCAGAAAGATTGTGAGTATCTAAGTGGCCATCAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCGACAACTTTGCAGAATCCACTGAAAAATCATGCCGTGAAAAATGCATGGAGGACTTGGTAAGCACCACACGATATGTCTCATGGTCTCTACACAATAAGAGTCGGGCAGGATTACGCCAGTTCTTAGATTCATTTGGTGGAACAGAACATTCCAATGCTTGTAATGATCCCACTGCAACTGTTCTATCACAAACAAATGTGCAAGAGAAGGAAGACACAAAGCCACAACTAGAAGTAAAGCTCAGTCACGTGGCCTCTGGAACTGATTCAAGCACATCCACCCAGACAGCTGAAACAAAGCTTGCGGACCTTCTAGATAGTACACTTTGGAATCGGAGGCTTGCACCCTCTTCTGAAAGGATTGTTTATGGTTTGGTACAACAAATATTTCATGGCATACGAGAATATTTCTTGGTTTCTACAGAATTAAAGTTCAACTGTTTCCTCTTGATGCCCATTGTGGATAAGTTGCCTGCACGCCTTCGGGAGGACCTAGAATCTGCTTTTGAAGATGACCTGGAAAATGTTTTTGACATGACCAATCTGCAACTTTCACTGGGGCAACAGAAAAGAGATACAGAAATTGAACTGAAAAGGATCAAGAGGCTCAAAGATAAATTCAGAATGATACATGAGCAGCTAATTCTACGTCAAGCCGCTTGA

Protein sequence

>Msa0639260

MEEETEHHQLQDKEENEWRLYEAYNELHALAQELHTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYGPHCESPSCYLLSDDDPSLSHHMSLSQIQEIIIKVEYKYCPNLTIIDTPGLVAPAPGRKNRAIQAQARAVESLVRAKMQHKEFIILCLEDCSDWSNATTRRVVMQIDPELSRTVIVSTKLDTRIPQFSRPSDVEVFLSPPASTLDGCILGDSPFFTSVPSGRVGSGTHCLYSSNDDFKQAVSFREIEDVASLEEKLGRPLSKQERSRIGVSKLRLFLEEILQKRYINNVPLIIPLLEKEHRSVTRKLSDINQELSTLDEAKLKEKGRAFHDMFLTKLSLLLKGTVVAPPDKFGETLPDERINGGAFVGADGVQFPHKLIPNAGMRLYGGAQYHRAMAEFRFVVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKAHDTFEPFLHQLGSRLLHILKRLLPISFYLLQKDCEYLSGHQVFLRRVASAFDNFAESTEKSCREKCMEDLVSTTRYVSWSLHNKSRAGLRQFLDSFGGTEHSNACNDPTATVLSQTNVQEKEDTKPQLEVKLSHVASGTDSSTSTQTAETKLADLLDSTLWNRRLAPSSERIVYGLVQQIFHGIREYFLVSTELKFNCFLLMPIVDKLPARLREDLESAFEDDLENVFDMTNLQLSLGQQKRDTEIELKRIKRLKDKFRMIHEQLILRQAA*