Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615190 | XP_013457288.1 | 95.741 | 540 | 23 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1043 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615190 | sp|Q8GTB6|THCAS_CANSA | 49.628 | 538 | 262 | 5 | 4 | 535 | 6 | 540 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615190 | G8A1B7 | 95.741 | 540 | 23 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1043 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615190 | Msa0698180 | 0.927030 | 2.072756e-91 | -8.615850e-47 |
| Msa0615190 | Msa1269190 | 0.913056 | 9.576529e-84 | -8.615850e-47 |
| Msa0440350 | Msa0615190 | 0.806057 | 9.894074e-50 | -8.615850e-47 |
| Msa0561030 | Msa0615190 | 0.853586 | 2.167123e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615190 | MtrunA17_Chr4g0051381 | 95.741 | 540 | 23 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1043 |
| Msa0615190 | MtrunA17_Chr4g0051411 | 84.831 | 534 | 81 | 0 | 1 | 534 | 1 | 534 | 0.0 | 924 |
| Msa0615190 | MtrunA17_Chr4g0051421 | 79.633 | 545 | 104 | 2 | 1 | 538 | 1 | 545 | 0.0 | 887 |
| Msa0615190 | MtrunA17_Chr4g0051421 | 77.138 | 538 | 118 | 2 | 7 | 541 | 546 | 1081 | 0.0 | 843 |
| Msa0615190 | MtrunA17_Chr4g0051211 | 70.064 | 471 | 136 | 2 | 69 | 535 | 2 | 471 | 0.0 | 704 |
| Msa0615190 | MtrunA17_Chr4g0051441 | 59.578 | 569 | 189 | 5 | 1 | 535 | 53 | 614 | 0.0 | 655 |
| Msa0615190 | MtrunA17_Chr2g0293121 | 51.711 | 526 | 250 | 2 | 10 | 535 | 2 | 523 | 0.0 | 566 |
| Msa0615190 | MtrunA17_Chr2g0292971 | 52.250 | 511 | 237 | 5 | 30 | 538 | 27 | 532 | 0.0 | 561 |
| Msa0615190 | MtrunA17_Chr3g0079831 | 53.008 | 532 | 240 | 6 | 5 | 535 | 14 | 536 | 0.0 | 552 |
| Msa0615190 | MtrunA17_Chr2g0293161 | 53.073 | 537 | 244 | 5 | 2 | 535 | 1 | 532 | 0.0 | 549 |
| Msa0615190 | MtrunA17_Chr3g0079791 | 52.182 | 527 | 242 | 5 | 11 | 535 | 4 | 522 | 0.0 | 548 |
| Msa0615190 | MtrunA17_Chr3g0079801 | 52.182 | 527 | 242 | 5 | 11 | 535 | 4 | 522 | 0.0 | 547 |
| Msa0615190 | MtrunA17_Chr2g0293191 | 52.974 | 538 | 245 | 5 | 1 | 535 | 31 | 563 | 0.0 | 545 |
| Msa0615190 | MtrunA17_Chr2g0292991 | 54.143 | 519 | 223 | 7 | 18 | 535 | 23 | 527 | 0.0 | 534 |
| Msa0615190 | MtrunA17_Chr4g0051551 | 52.142 | 537 | 242 | 7 | 1 | 535 | 35 | 558 | 0.0 | 530 |
| Msa0615190 | MtrunA17_Chr4g0051541 | 53.346 | 508 | 230 | 5 | 30 | 535 | 28 | 530 | 0.0 | 528 |
| Msa0615190 | MtrunA17_Chr2g0293021 | 52.724 | 514 | 233 | 6 | 30 | 543 | 30 | 533 | 0.0 | 523 |
| Msa0615190 | MtrunA17_Chr2g0293031 | 50.000 | 538 | 259 | 7 | 3 | 535 | 6 | 538 | 1.67e-175 | 506 |
| Msa0615190 | MtrunA17_Chr6g0457061 | 50.095 | 525 | 252 | 5 | 11 | 534 | 10 | 525 | 2.55e-171 | 495 |
| Msa0615190 | MtrunA17_Chr4g0046581 | 51.473 | 509 | 235 | 5 | 31 | 534 | 31 | 532 | 3.24e-171 | 495 |
| Msa0615190 | MtrunA17_Chr6g0457031 | 49.714 | 525 | 254 | 5 | 11 | 534 | 10 | 525 | 1.23e-170 | 494 |
| Msa0615190 | MtrunA17_Chr4g0048361 | 49.434 | 530 | 255 | 5 | 6 | 534 | 8 | 525 | 2.95e-170 | 492 |
| Msa0615190 | MtrunA17_Chr4g0048351 | 48.030 | 533 | 267 | 6 | 6 | 537 | 20 | 543 | 2.63e-169 | 490 |
| Msa0615190 | MtrunA17_Chr4g0048311 | 51.272 | 511 | 236 | 6 | 31 | 535 | 37 | 540 | 3.27e-168 | 488 |
| Msa0615190 | MtrunA17_Chr2g0293041 | 50.198 | 506 | 244 | 5 | 33 | 535 | 40 | 540 | 3.65e-168 | 488 |
| Msa0615190 | MtrunA17_Chr4g0028611 | 49.720 | 535 | 254 | 7 | 1 | 534 | 30 | 550 | 5.42e-168 | 487 |
| Msa0615190 | MtrunA17_Chr4g0051531 | 50.380 | 526 | 257 | 3 | 10 | 535 | 631 | 1152 | 1.07e-167 | 506 |
| Msa0615190 | MtrunA17_Chr4g0051531 | 50.395 | 506 | 243 | 5 | 32 | 534 | 39 | 539 | 2.19e-162 | 492 |
| Msa0615190 | MtrunA17_Chr2g0288611 | 48.932 | 468 | 232 | 3 | 68 | 534 | 4 | 465 | 1.82e-147 | 432 |
| Msa0615190 | MtrunA17_Chr1g0188271 | 40.649 | 524 | 294 | 8 | 32 | 545 | 31 | 547 | 1.89e-127 | 384 |
| Msa0615190 | MtrunA17_Chr4g0048331 | 43.373 | 415 | 208 | 4 | 124 | 534 | 1 | 392 | 5.03e-118 | 354 |
| Msa0615190 | MtrunA17_Chr3g0079821 | 57.965 | 226 | 93 | 2 | 310 | 535 | 5 | 228 | 2.88e-87 | 269 |
| Msa0615190 | MtrunA17_Chr2g0320381 | 56.790 | 81 | 31 | 1 | 158 | 238 | 36 | 112 | 3.36e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615190 | AT5G44440.1 | 50.847 | 531 | 245 | 7 | 8 | 533 | 8 | 527 | 0.0 | 520 |
| Msa0615190 | AT4G20820.1 | 49.162 | 537 | 255 | 5 | 2 | 533 | 1 | 524 | 5.80e-180 | 517 |
| Msa0615190 | AT5G44440.2 | 50.847 | 531 | 245 | 7 | 8 | 533 | 78 | 597 | 8.15e-180 | 520 |
| Msa0615190 | AT5G44400.1 | 48.704 | 540 | 263 | 9 | 3 | 536 | 6 | 537 | 1.91e-177 | 511 |
| Msa0615190 | AT2G34790.1 | 47.925 | 530 | 261 | 8 | 9 | 534 | 11 | 529 | 6.88e-176 | 507 |
| Msa0615190 | AT5G44390.1 | 47.698 | 543 | 266 | 11 | 3 | 535 | 6 | 540 | 7.20e-172 | 497 |
| Msa0615190 | AT5G44410.1 | 49.627 | 536 | 248 | 9 | 4 | 533 | 8 | 527 | 4.55e-171 | 495 |
| Msa0615190 | AT1G30760.2 | 48.924 | 511 | 248 | 6 | 28 | 534 | 48 | 549 | 7.04e-171 | 495 |
| Msa0615190 | AT1G30760.1 | 48.924 | 511 | 248 | 6 | 28 | 534 | 30 | 531 | 7.66e-171 | 494 |
| Msa0615190 | AT5G44360.1 | 49.358 | 545 | 253 | 11 | 1 | 536 | 1 | 531 | 1.01e-169 | 491 |
| Msa0615190 | AT5G44360.2 | 49.358 | 545 | 253 | 11 | 1 | 536 | 17 | 547 | 1.47e-169 | 491 |
| Msa0615190 | AT5G44380.1 | 48.799 | 541 | 262 | 8 | 3 | 535 | 6 | 539 | 1.46e-165 | 481 |
| Msa0615190 | AT5G44380.2 | 48.799 | 541 | 262 | 8 | 3 | 535 | 46 | 579 | 2.38e-165 | 482 |
| Msa0615190 | AT1G26420.1 | 46.704 | 531 | 270 | 9 | 8 | 535 | 5 | 525 | 8.30e-161 | 468 |
| Msa0615190 | AT1G30700.1 | 46.717 | 533 | 274 | 6 | 6 | 535 | 1 | 526 | 3.71e-160 | 467 |
| Msa0615190 | AT1G30730.1 | 47.170 | 530 | 267 | 6 | 6 | 533 | 5 | 523 | 4.76e-160 | 466 |
| Msa0615190 | AT1G26380.1 | 47.026 | 538 | 270 | 10 | 11 | 543 | 8 | 535 | 2.93e-159 | 465 |
| Msa0615190 | AT1G26410.1 | 48.148 | 513 | 254 | 8 | 26 | 535 | 46 | 549 | 6.71e-159 | 464 |
| Msa0615190 | AT1G11770.1 | 45.996 | 537 | 277 | 7 | 4 | 535 | 1 | 529 | 1.46e-158 | 463 |
| Msa0615190 | AT1G26400.1 | 46.490 | 527 | 270 | 7 | 8 | 532 | 5 | 521 | 6.05e-158 | 461 |
| Msa0615190 | AT4G20840.1 | 46.562 | 509 | 261 | 6 | 31 | 536 | 36 | 536 | 1.39e-157 | 461 |
| Msa0615190 | AT1G30710.1 | 45.047 | 535 | 272 | 9 | 9 | 535 | 8 | 528 | 2.51e-157 | 460 |
| Msa0615190 | AT4G20860.1 | 48.767 | 527 | 241 | 12 | 22 | 535 | 19 | 529 | 3.44e-157 | 459 |
| Msa0615190 | AT1G26390.1 | 47.741 | 509 | 249 | 5 | 27 | 535 | 36 | 527 | 4.56e-155 | 454 |
| Msa0615190 | AT1G34575.1 | 45.591 | 533 | 266 | 10 | 6 | 533 | 9 | 522 | 1.94e-152 | 447 |
| Msa0615190 | AT4G20800.1 | 45.117 | 512 | 273 | 5 | 23 | 533 | 19 | 523 | 2.18e-150 | 442 |
| Msa0615190 | AT4G20830.2 | 47.047 | 508 | 256 | 7 | 32 | 535 | 38 | 536 | 2.47e-149 | 439 |
| Msa0615190 | AT4G20830.1 | 47.047 | 508 | 256 | 7 | 32 | 535 | 38 | 536 | 5.13e-149 | 440 |
| Msa0615190 | AT1G30720.1 | 47.117 | 503 | 257 | 5 | 33 | 533 | 29 | 524 | 9.42e-147 | 432 |
| Msa0615190 | AT1G30740.1 | 45.269 | 539 | 274 | 10 | 10 | 539 | 6 | 532 | 1.73e-146 | 432 |
| Msa0615190 | AT1G30740.2 | 45.269 | 539 | 274 | 10 | 10 | 539 | 9 | 535 | 1.84e-146 | 432 |
| Msa0615190 | AT1G01980.1 | 44.424 | 538 | 282 | 9 | 6 | 535 | 6 | 534 | 2.51e-144 | 427 |
| Msa0615190 | AT2G34810.1 | 43.725 | 510 | 279 | 5 | 31 | 535 | 33 | 539 | 2.24e-137 | 409 |
Find 105 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCGGTTCTTTACCTTTA+TGG | 0.132034 | 4_2:+64602351 | Msa0615190:CDS |
| AAAATTCCCATTCCTGAAAT+TGG | 0.132285 | 4_2:+64602459 | Msa0615190:CDS |
| AAATTATGCTTGTTTGAATA+TGG | 0.141661 | 4_2:-64601585 | None:intergenic |
| GTTATAAGCAAGCTAGTATT+TGG | 0.173497 | 4_2:+64602796 | Msa0615190:CDS |
| ATTCCTTCTAATCCAATTTC+AGG | 0.177038 | 4_2:-64602471 | None:intergenic |
| AATCGGTTCTTTACCTTTAT+GGG | 0.198752 | 4_2:+64602352 | Msa0615190:CDS |
| CACCCGGAAAACCAAGATTT+TGG | 0.227676 | 4_2:-64601810 | None:intergenic |
| TAGAAAACTTTATAGTTATA+TGG | 0.249330 | 4_2:+64602686 | Msa0615190:CDS |
| AATTATAGAGATCTTGATAT+TGG | 0.259521 | 4_2:+64602747 | Msa0615190:CDS |
| AATGAACTGAGTAATAAATT+TGG | 0.287296 | 4_2:-64602617 | None:intergenic |
| GGTGGTGGAGGAGCAAGTTT+TGG | 0.291186 | 4_2:+64602006 | Msa0615190:CDS |
| GTTTCAAGTGGTTCGTCTTT+CGG | 0.292602 | 4_2:-64602378 | None:intergenic |
| AAGGGTAAATTCAAGTATAA+AGG | 0.303183 | 4_2:+64602191 | Msa0615190:CDS |
| GTGAGATCAAGGATGATAAA+TGG | 0.304625 | 4_2:-64601688 | None:intergenic |
| AAATATCACCATAGCATCTT+TGG | 0.304978 | 4_2:-64602520 | None:intergenic |
| ATATTTCAAGCCTTGTTTCT+TGG | 0.305951 | 4_2:+64602240 | Msa0615190:CDS |
| ATTCCTGAAATTGGATTAGA+AGG | 0.307063 | 4_2:+64602468 | Msa0615190:CDS |
| ATTATAGAGATCTTGATATT+GGG | 0.316617 | 4_2:+64602748 | Msa0615190:CDS |
| ATTCCATTTCCACATAGATA+TGG | 0.327139 | 4_2:+64602585 | Msa0615190:CDS |
| GGAACCTTGGTTCGTAAATT+CGG | 0.334327 | 4_2:+64601883 | Msa0615190:CDS |
| GTTCATTTCTGAAGAAGTTA+AGG | 0.334950 | 4_2:-64602881 | None:intergenic |
| TTAAAGACTGTCACAATTGA+TGG | 0.347075 | 4_2:-64602066 | None:intergenic |
| AATTATGCTTGTTTGAATAT+GGG | 0.347218 | 4_2:-64601584 | None:intergenic |
| AGGGTAAATTCAAGTATAAA+GGG | 0.347661 | 4_2:+64602192 | Msa0615190:CDS |
| GGATTCGAATCTGCAGGTTA+TGG | 0.348552 | 4_2:-64601618 | None:intergenic |
| ATAGTAAAATATAAGTTTAG+AGG | 0.351664 | 4_2:-64601322 | None:intergenic |
| TTATAAGCAAGCTAGTATTT+GGG | 0.359669 | 4_2:+64602797 | Msa0615190:CDS |
| TATTGATGAGTAAGAGGAAT+TGG | 0.360998 | 4_2:-64601479 | None:intergenic |
| CTCTGAAGTTTGTGAGATCA+AGG | 0.366703 | 4_2:-64601699 | None:intergenic |
| GTGATAATGACAAGAGGTTT+AGG | 0.372360 | 4_2:-64601547 | None:intergenic |
| CTTGGTGACTTTGAAACAAA+AGG | 0.372572 | 4_2:-64602711 | None:intergenic |
| CGTCTTTCGGAAACCCATAA+AGG | 0.375701 | 4_2:-64602365 | None:intergenic |
| AAATTTATTACTCAGTTCAT+TGG | 0.379935 | 4_2:+64602619 | Msa0615190:CDS |
| TTTCCATATCTATGTGGAAA+TGG | 0.380986 | 4_2:-64602588 | None:intergenic |
| TTTGAGTATTGATGAGTAAG+AGG | 0.381041 | 4_2:-64601485 | None:intergenic |
| TGAATATGGGAAATCTGTTT+AGG | 0.386909 | 4_2:-64601571 | None:intergenic |
| CAAGAACAACTTCAAAAGAT+TGG | 0.391940 | 4_2:+64602833 | Msa0615190:CDS |
| CACATCAGTGGCGGCGGCTA+TGG | 0.400837 | 4_2:+64601862 | Msa0615190:CDS |
| AAATTGGATTAGAAGGAATA+TGG | 0.403457 | 4_2:+64602475 | Msa0615190:CDS |
| CAAGAGAAGTTTCCTGAGCT+TGG | 0.412203 | 4_2:+64602291 | Msa0615190:CDS |
| TTCATTTCTGAAGAAGTTAA+GGG | 0.418127 | 4_2:-64602880 | None:intergenic |
| TCTAATCCAATTTCAGGAAT+GGG | 0.420910 | 4_2:-64602465 | None:intergenic |
| TACCTTCTCTCATGTGTTCA+AGG | 0.422099 | 4_2:+64602910 | Msa0615190:CDS |
| TTCTAATCCAATTTCAGGAA+TGG | 0.423335 | 4_2:-64602466 | None:intergenic |
| AAGATTGTGTTGAGATGAGT+TGG | 0.428995 | 4_2:+64602325 | Msa0615190:CDS |
| GAAGTTTCCTGAGCTTGGTT+TGG | 0.437875 | 4_2:+64602296 | Msa0615190:CDS |
| TTTCAAGCCTTGTTTCTTGG+AGG | 0.440275 | 4_2:+64602243 | Msa0615190:CDS |
| CAAAGTCATGGCCACCGCTT+CGG | 0.450183 | 4_2:-64601639 | None:intergenic |
| AAGCGGTGGCCATGACTTTG+AGG | 0.450822 | 4_2:+64601642 | Msa0615190:CDS |
| TGAGATCAAGGATGATAAAT+GGG | 0.474438 | 4_2:-64601687 | None:intergenic |
| GGTGGTGAATGTCCTACTAT+AGG | 0.479825 | 4_2:+64601829 | Msa0615190:CDS |
| AGAACAGCTTGGGTTCAATC+TGG | 0.484147 | 4_2:+64601745 | Msa0615190:CDS |
| TGGGCTATTAGAGGTGGTGG+AGG | 0.490480 | 4_2:+64601994 | Msa0615190:CDS |
| AATTACTGTTATCTTACAAA+GGG | 0.491690 | 4_2:+64602173 | Msa0615190:CDS |
| TGAGTAAGAGGAATTGGCTT+TGG | 0.492341 | 4_2:-64601473 | None:intergenic |
| TGTAGAAAGCAGAACAGCTT+GGG | 0.494574 | 4_2:+64601735 | Msa0615190:CDS |
| CTATCCATTATGCCACCATA+AGG | 0.494662 | 4_2:-64602546 | None:intergenic |
| TGAGATGAGTTGGGTTGAAT+CGG | 0.513533 | 4_2:+64602335 | Msa0615190:CDS |
| GTTCAATCTGGTGCAACAAT+TGG | 0.515144 | 4_2:+64601757 | Msa0615190:CDS |
| ATTTCTTGACAGAGAAGCAA+TGG | 0.520988 | 4_2:+64601957 | Msa0615190:CDS |
| TAATTGATATATGCAGCTCT+TGG | 0.521563 | 4_2:-64602729 | None:intergenic |
| AGATTGTGTTGAGATGAGTT+GGG | 0.523370 | 4_2:+64602326 | Msa0615190:CDS |
| TCTCTAACCAAACCAAGCTC+AGG | 0.524526 | 4_2:-64602303 | None:intergenic |
| GACAAAGAAATCAGCAGCTA+AGG | 0.525403 | 4_2:+64602933 | Msa0615190:CDS |
| CTGTTGAGCAACGTTTCAAG+TGG | 0.530743 | 4_2:-64602390 | None:intergenic |
| CGCTTCGGATTCGAATCTGC+AGG | 0.531779 | 4_2:-64601624 | None:intergenic |
| AGCGGTGGCCATGACTTTGA+GGG | 0.532159 | 4_2:+64601643 | Msa0615190:CDS |
| AAGAGGTTTAGGTGTTGTGT+TGG | 0.535453 | 4_2:-64601536 | None:intergenic |
| AAATGGGACTTCAGAAACAT+AGG | 0.536814 | 4_2:-64601671 | None:intergenic |
| TATAAATTTCCATATCTATG+TGG | 0.540221 | 4_2:-64602594 | None:intergenic |
| TGTCCACCAACACCTATAGT+AGG | 0.545211 | 4_2:-64601841 | None:intergenic |
| TTTCTTGACAGAGAAGCAAT+GGG | 0.552335 | 4_2:+64601958 | Msa0615190:CDS |
| TGGCGGCGGCTATGGAACCT+TGG | 0.554368 | 4_2:+64601870 | Msa0615190:CDS |
| GGTGGACACATCAGTGGCGG+CGG | 0.558776 | 4_2:+64601856 | Msa0615190:CDS |
| TGGCCTATGTTTCATGATGA+TGG | 0.560963 | 4_2:+64602495 | Msa0615190:CDS |
| GCACCATCATCATGAAACAT+AGG | 0.563262 | 4_2:-64602498 | None:intergenic |
| CAACAGAACACTAGCTGCAA+AGG | 0.565270 | 4_2:+64602407 | Msa0615190:CDS |
| AAATTACTGTTATCTTACAA+AGG | 0.566762 | 4_2:+64602172 | Msa0615190:CDS |
| TCCCTTGAACACATGAGAGA+AGG | 0.572099 | 4_2:-64602912 | None:intergenic |
| ATGTAGAAAGCAGAACAGCT+TGG | 0.572213 | 4_2:+64601734 | Msa0615190:CDS |
| TTATAGAGATCTTGATATTG+GGG | 0.576997 | 4_2:+64602749 | Msa0615190:CDS |
| TGCTCACATAATTGATGTGA+AGG | 0.585552 | 4_2:+64601930 | Msa0615190:CDS |
| GCATCAAGAAAGTGATGAGG+TGG | 0.587589 | 4_2:+64602641 | Msa0615190:CDS |
| CAACAAAGCTTATTCACAAG+TGG | 0.589114 | 4_2:+64602115 | Msa0615190:CDS |
| TGTCCTACTATAGGTGTTGG+TGG | 0.598722 | 4_2:+64601838 | Msa0615190:CDS |
| GAATGTCCTACTATAGGTGT+TGG | 0.600015 | 4_2:+64601835 | Msa0615190:CDS |
| GTGGCCATGACTTTGAGGGT+CGG | 0.601490 | 4_2:+64601647 | Msa0615190:CDS |
| ACCTTCTCTCATGTGTTCAA+GGG | 0.603782 | 4_2:+64602911 | Msa0615190:CDS |
| ATTGGGGTGAATAATAACAA+TGG | 0.606283 | 4_2:+64602765 | Msa0615190:CDS |
| TATAAGCAAGCTAGTATTTG+GGG | 0.615112 | 4_2:+64602798 | Msa0615190:CDS |
| TGATGGTGCCAAAGATGCTA+TGG | 0.619348 | 4_2:+64602512 | Msa0615190:CDS |
| CAGATTCGAATCCGAAGCGG+TGG | 0.621977 | 4_2:+64601628 | Msa0615190:CDS |
| TCATTTCTGAAGAAGTTAAG+GGG | 0.625972 | 4_2:-64602879 | None:intergenic |
| ATCTACACCTCCAAGAAACA+AGG | 0.636642 | 4_2:-64602250 | None:intergenic |
| GGGTAAATTCAAGTATAAAG+GGG | 0.641672 | 4_2:+64602193 | Msa0615190:CDS |
| AGGACCGACCCTCAAAGTCA+TGG | 0.642967 | 4_2:-64601651 | None:intergenic |
| GGTGTTGGTGGACACATCAG+TGG | 0.646578 | 4_2:+64601850 | Msa0615190:CDS |
| GTTGGTGGACACATCAGTGG+CGG | 0.651631 | 4_2:+64601853 | Msa0615190:CDS |
| AATAACTATAGAGACACTGA+AGG | 0.658653 | 4_2:-64601414 | None:intergenic |
| TTAGGTGTGATAATGACAAG+AGG | 0.664428 | 4_2:-64601553 | None:intergenic |
| AAGACCGAATTTACGAACCA+AGG | 0.678437 | 4_2:-64601887 | None:intergenic |
| ATAGTAGGACATTCACCACC+CGG | 0.688594 | 4_2:-64601826 | None:intergenic |
| GCTCACATAATTGATGTGAA+GGG | 0.694549 | 4_2:+64601931 | Msa0615190:CDS |
| TTGGCATCAAGAAAGTGATG+AGG | 0.701714 | 4_2:+64602638 | Msa0615190:CDS |
| CTGCAGATTCGAATCCGAAG+CGG | 0.713192 | 4_2:+64601625 | Msa0615190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAAAATATAAGTTTAG+AGG | - | chr4_2:64601325-64601344 | None:intergenic | 15.0% |
| !! | TAGAAAACTTTATAGTTATA+TGG | + | chr4_2:64602686-64602705 | Msa0615190:CDS | 15.0% |
| !! | ATAGTAAAATATAAGTTTAG+AGG | - | chr4_2:64601325-64601344 | None:intergenic | 15.0% |
| !! | TAGAAAACTTTATAGTTATA+TGG | + | chr4_2:64602686-64602705 | Msa0615190:CDS | 15.0% |
| !! | AATTATGCTTGTTTGAATAT+GGG | - | chr4_2:64601587-64601606 | None:intergenic | 20.0% |
| !! | AAATTATGCTTGTTTGAATA+TGG | - | chr4_2:64601588-64601607 | None:intergenic | 20.0% |
| !! | AAATTACTGTTATCTTACAA+AGG | + | chr4_2:64602172-64602191 | Msa0615190:CDS | 20.0% |
| !! | AATTACTGTTATCTTACAAA+GGG | + | chr4_2:64602173-64602192 | Msa0615190:CDS | 20.0% |
| !! | TATAAATTTCCATATCTATG+TGG | - | chr4_2:64602597-64602616 | None:intergenic | 20.0% |
| !! | AATGAACTGAGTAATAAATT+TGG | - | chr4_2:64602620-64602639 | None:intergenic | 20.0% |
| !! | AAATTTATTACTCAGTTCAT+TGG | + | chr4_2:64602619-64602638 | Msa0615190:CDS | 20.0% |
| !! | TGGAAAAAATGAAAATGAAT+TGG | + | chr4_2:64602661-64602680 | Msa0615190:CDS | 20.0% |
| !! | AATTATAGAGATCTTGATAT+TGG | + | chr4_2:64602747-64602766 | Msa0615190:CDS | 20.0% |
| !! | ATTATAGAGATCTTGATATT+GGG | + | chr4_2:64602748-64602767 | Msa0615190:CDS | 20.0% |
| !! | AATTATGCTTGTTTGAATAT+GGG | - | chr4_2:64601587-64601606 | None:intergenic | 20.0% |
| !! | AAATTATGCTTGTTTGAATA+TGG | - | chr4_2:64601588-64601607 | None:intergenic | 20.0% |
| !! | AAATTACTGTTATCTTACAA+AGG | + | chr4_2:64602172-64602191 | Msa0615190:CDS | 20.0% |
| !! | AATTACTGTTATCTTACAAA+GGG | + | chr4_2:64602173-64602192 | Msa0615190:CDS | 20.0% |
| !! | TATAAATTTCCATATCTATG+TGG | - | chr4_2:64602597-64602616 | None:intergenic | 20.0% |
| !! | AATGAACTGAGTAATAAATT+TGG | - | chr4_2:64602620-64602639 | None:intergenic | 20.0% |
| !! | AAATTTATTACTCAGTTCAT+TGG | + | chr4_2:64602619-64602638 | Msa0615190:CDS | 20.0% |
| !! | TGGAAAAAATGAAAATGAAT+TGG | + | chr4_2:64602661-64602680 | Msa0615190:CDS | 20.0% |
| !! | AATTATAGAGATCTTGATAT+TGG | + | chr4_2:64602747-64602766 | Msa0615190:CDS | 20.0% |
| !! | ATTATAGAGATCTTGATATT+GGG | + | chr4_2:64602748-64602767 | Msa0615190:CDS | 20.0% |
| !!! | AACCAAGATTTTGGTTTTTT+CGG | - | chr4_2:64601804-64601823 | None:intergenic | 25.0% |
| !!! | AATGGGTGAAGATTATTTTT+GGG | + | chr4_2:64601975-64601994 | Msa0615190:CDS | 25.0% |
| ! | CTTTAATGTTCCAAAAACAT+TGG | + | chr4_2:64602083-64602102 | Msa0615190:CDS | 25.0% |
| ! | AAGGGTAAATTCAAGTATAA+AGG | + | chr4_2:64602191-64602210 | Msa0615190:CDS | 25.0% |
| ! | AGGGTAAATTCAAGTATAAA+GGG | + | chr4_2:64602192-64602211 | Msa0615190:CDS | 25.0% |
| !! | AAATTGGATTAGAAGGAATA+TGG | + | chr4_2:64602475-64602494 | Msa0615190:CDS | 25.0% |
| !!! | ATGGTGATATTTTTTCCTTA+TGG | + | chr4_2:64602531-64602550 | Msa0615190:CDS | 25.0% |
| ! | TTATAGAGATCTTGATATTG+GGG | + | chr4_2:64602749-64602768 | Msa0615190:CDS | 25.0% |
| ! | TTATAAGCAAGCTAGTATTT+GGG | + | chr4_2:64602797-64602816 | Msa0615190:CDS | 25.0% |
| !! | TTCATTTCTGAAGAAGTTAA+GGG | - | chr4_2:64602883-64602902 | None:intergenic | 25.0% |
| !!! | AACCAAGATTTTGGTTTTTT+CGG | - | chr4_2:64601804-64601823 | None:intergenic | 25.0% |
| !!! | AATGGGTGAAGATTATTTTT+GGG | + | chr4_2:64601975-64601994 | Msa0615190:CDS | 25.0% |
| ! | CTTTAATGTTCCAAAAACAT+TGG | + | chr4_2:64602083-64602102 | Msa0615190:CDS | 25.0% |
| ! | AAGGGTAAATTCAAGTATAA+AGG | + | chr4_2:64602191-64602210 | Msa0615190:CDS | 25.0% |
| ! | AGGGTAAATTCAAGTATAAA+GGG | + | chr4_2:64602192-64602211 | Msa0615190:CDS | 25.0% |
| !! | AAATTGGATTAGAAGGAATA+TGG | + | chr4_2:64602475-64602494 | Msa0615190:CDS | 25.0% |
| !!! | ATGGTGATATTTTTTCCTTA+TGG | + | chr4_2:64602531-64602550 | Msa0615190:CDS | 25.0% |
| ! | TTATAGAGATCTTGATATTG+GGG | + | chr4_2:64602749-64602768 | Msa0615190:CDS | 25.0% |
| ! | TTATAAGCAAGCTAGTATTT+GGG | + | chr4_2:64602797-64602816 | Msa0615190:CDS | 25.0% |
| !! | TTCATTTCTGAAGAAGTTAA+GGG | - | chr4_2:64602883-64602902 | None:intergenic | 25.0% |
| AATAACTATAGAGACACTGA+AGG | - | chr4_2:64601417-64601436 | None:intergenic | 30.0% | |
| TATTGATGAGTAAGAGGAAT+TGG | - | chr4_2:64601482-64601501 | None:intergenic | 30.0% | |
| !! | TTTGAGTATTGATGAGTAAG+AGG | - | chr4_2:64601488-64601507 | None:intergenic | 30.0% |
| TGAATATGGGAAATCTGTTT+AGG | - | chr4_2:64601574-64601593 | None:intergenic | 30.0% | |
| TGAGATCAAGGATGATAAAT+GGG | - | chr4_2:64601690-64601709 | None:intergenic | 30.0% | |
| TACCGAAAAAACCAAAATCT+TGG | + | chr4_2:64601799-64601818 | Msa0615190:CDS | 30.0% | |
| !! | AAACCAAAATCTTGGTTTTC+CGG | + | chr4_2:64601807-64601826 | Msa0615190:CDS | 30.0% |
| ! | CAATGGGTGAAGATTATTTT+TGG | + | chr4_2:64601974-64601993 | Msa0615190:CDS | 30.0% |
| !!! | GATTATTTTTGGGCTATTAG+AGG | + | chr4_2:64601985-64602004 | Msa0615190:CDS | 30.0% |
| !!! | GTTTTGGAGTCATAATTTCA+TGG | + | chr4_2:64602022-64602041 | Msa0615190:CDS | 30.0% |
| TTAAAGACTGTCACAATTGA+TGG | - | chr4_2:64602069-64602088 | None:intergenic | 30.0% | |
| ! | GCATTTTGTTCCAATGTTTT+TGG | - | chr4_2:64602096-64602115 | None:intergenic | 30.0% |
| GGGTAAATTCAAGTATAAAG+GGG | + | chr4_2:64602193-64602212 | Msa0615190:CDS | 30.0% | |
| !! | ATATTTCAAGCCTTGTTTCT+TGG | + | chr4_2:64602240-64602259 | Msa0615190:CDS | 30.0% |
| ! | AATCGGTTCTTTACCTTTAT+GGG | + | chr4_2:64602352-64602371 | Msa0615190:CDS | 30.0% |
| AAAATTCCCATTCCTGAAAT+TGG | + | chr4_2:64602459-64602478 | Msa0615190:CDS | 30.0% | |
| TCTAATCCAATTTCAGGAAT+GGG | - | chr4_2:64602468-64602487 | None:intergenic | 30.0% | |
| TTCTAATCCAATTTCAGGAA+TGG | - | chr4_2:64602469-64602488 | None:intergenic | 30.0% | |
| ! | ATTCCTGAAATTGGATTAGA+AGG | + | chr4_2:64602468-64602487 | Msa0615190:CDS | 30.0% |
| ATTCCTTCTAATCCAATTTC+AGG | - | chr4_2:64602474-64602493 | None:intergenic | 30.0% | |
| AAATATCACCATAGCATCTT+TGG | - | chr4_2:64602523-64602542 | None:intergenic | 30.0% | |
| !!! | GTGATATTTTTTCCTTATGG+TGG | + | chr4_2:64602534-64602553 | Msa0615190:CDS | 30.0% |
| ATTCCATTTCCACATAGATA+TGG | + | chr4_2:64602585-64602604 | Msa0615190:CDS | 30.0% | |
| TTTCCATATCTATGTGGAAA+TGG | - | chr4_2:64602591-64602610 | None:intergenic | 30.0% | |
| TAATTGATATATGCAGCTCT+TGG | - | chr4_2:64602732-64602751 | None:intergenic | 30.0% | |
| ATTGGGGTGAATAATAACAA+TGG | + | chr4_2:64602765-64602784 | Msa0615190:CDS | 30.0% | |
| GTTATAAGCAAGCTAGTATT+TGG | + | chr4_2:64602796-64602815 | Msa0615190:CDS | 30.0% | |
| TATAAGCAAGCTAGTATTTG+GGG | + | chr4_2:64602798-64602817 | Msa0615190:CDS | 30.0% | |
| CAAGAACAACTTCAAAAGAT+TGG | + | chr4_2:64602833-64602852 | Msa0615190:CDS | 30.0% | |
| ! | TCATTTCTGAAGAAGTTAAG+GGG | - | chr4_2:64602882-64602901 | None:intergenic | 30.0% |
| ! | GTTCATTTCTGAAGAAGTTA+AGG | - | chr4_2:64602884-64602903 | None:intergenic | 30.0% |
| AATAACTATAGAGACACTGA+AGG | - | chr4_2:64601417-64601436 | None:intergenic | 30.0% | |
| TATTGATGAGTAAGAGGAAT+TGG | - | chr4_2:64601482-64601501 | None:intergenic | 30.0% | |
| !! | TTTGAGTATTGATGAGTAAG+AGG | - | chr4_2:64601488-64601507 | None:intergenic | 30.0% |
| TGAATATGGGAAATCTGTTT+AGG | - | chr4_2:64601574-64601593 | None:intergenic | 30.0% | |
| TGAGATCAAGGATGATAAAT+GGG | - | chr4_2:64601690-64601709 | None:intergenic | 30.0% | |
| TACCGAAAAAACCAAAATCT+TGG | + | chr4_2:64601799-64601818 | Msa0615190:CDS | 30.0% | |
| !! | AAACCAAAATCTTGGTTTTC+CGG | + | chr4_2:64601807-64601826 | Msa0615190:CDS | 30.0% |
| ! | CAATGGGTGAAGATTATTTT+TGG | + | chr4_2:64601974-64601993 | Msa0615190:CDS | 30.0% |
| !!! | GATTATTTTTGGGCTATTAG+AGG | + | chr4_2:64601985-64602004 | Msa0615190:CDS | 30.0% |
| !!! | GTTTTGGAGTCATAATTTCA+TGG | + | chr4_2:64602022-64602041 | Msa0615190:CDS | 30.0% |
| TTAAAGACTGTCACAATTGA+TGG | - | chr4_2:64602069-64602088 | None:intergenic | 30.0% | |
| ! | GCATTTTGTTCCAATGTTTT+TGG | - | chr4_2:64602096-64602115 | None:intergenic | 30.0% |
| GGGTAAATTCAAGTATAAAG+GGG | + | chr4_2:64602193-64602212 | Msa0615190:CDS | 30.0% | |
| !! | ATATTTCAAGCCTTGTTTCT+TGG | + | chr4_2:64602240-64602259 | Msa0615190:CDS | 30.0% |
| ! | AATCGGTTCTTTACCTTTAT+GGG | + | chr4_2:64602352-64602371 | Msa0615190:CDS | 30.0% |
| AAAATTCCCATTCCTGAAAT+TGG | + | chr4_2:64602459-64602478 | Msa0615190:CDS | 30.0% | |
| TCTAATCCAATTTCAGGAAT+GGG | - | chr4_2:64602468-64602487 | None:intergenic | 30.0% | |
| TTCTAATCCAATTTCAGGAA+TGG | - | chr4_2:64602469-64602488 | None:intergenic | 30.0% | |
| ! | ATTCCTGAAATTGGATTAGA+AGG | + | chr4_2:64602468-64602487 | Msa0615190:CDS | 30.0% |
| ATTCCTTCTAATCCAATTTC+AGG | - | chr4_2:64602474-64602493 | None:intergenic | 30.0% | |
| AAATATCACCATAGCATCTT+TGG | - | chr4_2:64602523-64602542 | None:intergenic | 30.0% | |
| !!! | GTGATATTTTTTCCTTATGG+TGG | + | chr4_2:64602534-64602553 | Msa0615190:CDS | 30.0% |
| ATTCCATTTCCACATAGATA+TGG | + | chr4_2:64602585-64602604 | Msa0615190:CDS | 30.0% | |
| TTTCCATATCTATGTGGAAA+TGG | - | chr4_2:64602591-64602610 | None:intergenic | 30.0% | |
| TAATTGATATATGCAGCTCT+TGG | - | chr4_2:64602732-64602751 | None:intergenic | 30.0% | |
| ATTGGGGTGAATAATAACAA+TGG | + | chr4_2:64602765-64602784 | Msa0615190:CDS | 30.0% | |
| GTTATAAGCAAGCTAGTATT+TGG | + | chr4_2:64602796-64602815 | Msa0615190:CDS | 30.0% | |
| TATAAGCAAGCTAGTATTTG+GGG | + | chr4_2:64602798-64602817 | Msa0615190:CDS | 30.0% | |
| CAAGAACAACTTCAAAAGAT+TGG | + | chr4_2:64602833-64602852 | Msa0615190:CDS | 30.0% | |
| ! | TCATTTCTGAAGAAGTTAAG+GGG | - | chr4_2:64602882-64602901 | None:intergenic | 30.0% |
| ! | GTTCATTTCTGAAGAAGTTA+AGG | - | chr4_2:64602884-64602903 | None:intergenic | 30.0% |
| ! | GTGATAATGACAAGAGGTTT+AGG | - | chr4_2:64601550-64601569 | None:intergenic | 35.0% |
| ! | TTAGGTGTGATAATGACAAG+AGG | - | chr4_2:64601556-64601575 | None:intergenic | 35.0% |
| AAATGGGACTTCAGAAACAT+AGG | - | chr4_2:64601674-64601693 | None:intergenic | 35.0% | |
| GTGAGATCAAGGATGATAAA+TGG | - | chr4_2:64601691-64601710 | None:intergenic | 35.0% | |
| !! | AACCAAAATCTTGGTTTTCC+GGG | + | chr4_2:64601808-64601827 | Msa0615190:CDS | 35.0% |
| TGCTCACATAATTGATGTGA+AGG | + | chr4_2:64601930-64601949 | Msa0615190:CDS | 35.0% | |
| GCTCACATAATTGATGTGAA+GGG | + | chr4_2:64601931-64601950 | Msa0615190:CDS | 35.0% | |
| ATTTCTTGACAGAGAAGCAA+TGG | + | chr4_2:64601957-64601976 | Msa0615190:CDS | 35.0% | |
| TTTCTTGACAGAGAAGCAAT+GGG | + | chr4_2:64601958-64601977 | Msa0615190:CDS | 35.0% | |
| !!! | TATTTTTGGGCTATTAGAGG+TGG | + | chr4_2:64601988-64602007 | Msa0615190:CDS | 35.0% |
| CAACAAAGCTTATTCACAAG+TGG | + | chr4_2:64602115-64602134 | Msa0615190:CDS | 35.0% | |
| AAGATTGTGTTGAGATGAGT+TGG | + | chr4_2:64602325-64602344 | Msa0615190:CDS | 35.0% | |
| AGATTGTGTTGAGATGAGTT+GGG | + | chr4_2:64602326-64602345 | Msa0615190:CDS | 35.0% | |
| ! | GAATCGGTTCTTTACCTTTA+TGG | + | chr4_2:64602351-64602370 | Msa0615190:CDS | 35.0% |
| ! | TTTTCCTTATGGTGGCATAA+TGG | + | chr4_2:64602542-64602561 | Msa0615190:CDS | 35.0% |
| !! | CTTGGTGACTTTGAAACAAA+AGG | - | chr4_2:64602714-64602733 | None:intergenic | 35.0% |
| ! | GTGATAATGACAAGAGGTTT+AGG | - | chr4_2:64601550-64601569 | None:intergenic | 35.0% |
| ! | TTAGGTGTGATAATGACAAG+AGG | - | chr4_2:64601556-64601575 | None:intergenic | 35.0% |
| AAATGGGACTTCAGAAACAT+AGG | - | chr4_2:64601674-64601693 | None:intergenic | 35.0% | |
| GTGAGATCAAGGATGATAAA+TGG | - | chr4_2:64601691-64601710 | None:intergenic | 35.0% | |
| !! | AACCAAAATCTTGGTTTTCC+GGG | + | chr4_2:64601808-64601827 | Msa0615190:CDS | 35.0% |
| TGCTCACATAATTGATGTGA+AGG | + | chr4_2:64601930-64601949 | Msa0615190:CDS | 35.0% | |
| GCTCACATAATTGATGTGAA+GGG | + | chr4_2:64601931-64601950 | Msa0615190:CDS | 35.0% | |
| ATTTCTTGACAGAGAAGCAA+TGG | + | chr4_2:64601957-64601976 | Msa0615190:CDS | 35.0% | |
| TTTCTTGACAGAGAAGCAAT+GGG | + | chr4_2:64601958-64601977 | Msa0615190:CDS | 35.0% | |
| !!! | TATTTTTGGGCTATTAGAGG+TGG | + | chr4_2:64601988-64602007 | Msa0615190:CDS | 35.0% |
| CAACAAAGCTTATTCACAAG+TGG | + | chr4_2:64602115-64602134 | Msa0615190:CDS | 35.0% | |
| AAGATTGTGTTGAGATGAGT+TGG | + | chr4_2:64602325-64602344 | Msa0615190:CDS | 35.0% | |
| AGATTGTGTTGAGATGAGTT+GGG | + | chr4_2:64602326-64602345 | Msa0615190:CDS | 35.0% | |
| ! | GAATCGGTTCTTTACCTTTA+TGG | + | chr4_2:64602351-64602370 | Msa0615190:CDS | 35.0% |
| ! | TTTTCCTTATGGTGGCATAA+TGG | + | chr4_2:64602542-64602561 | Msa0615190:CDS | 35.0% |
| !! | CTTGGTGACTTTGAAACAAA+AGG | - | chr4_2:64602714-64602733 | None:intergenic | 35.0% |
| ! | TGAGTAAGAGGAATTGGCTT+TGG | - | chr4_2:64601476-64601495 | None:intergenic | 40.0% |
| ! | AAGAGGTTTAGGTGTTGTGT+TGG | - | chr4_2:64601539-64601558 | None:intergenic | 40.0% |
| !! | CTCTGAAGTTTGTGAGATCA+AGG | - | chr4_2:64601702-64601721 | None:intergenic | 40.0% |
| ATGTAGAAAGCAGAACAGCT+TGG | + | chr4_2:64601734-64601753 | Msa0615190:CDS | 40.0% | |
| TGTAGAAAGCAGAACAGCTT+GGG | + | chr4_2:64601735-64601754 | Msa0615190:CDS | 40.0% | |
| GTTCAATCTGGTGCAACAAT+TGG | + | chr4_2:64601757-64601776 | Msa0615190:CDS | 40.0% | |
| GAATGTCCTACTATAGGTGT+TGG | + | chr4_2:64601835-64601854 | Msa0615190:CDS | 40.0% | |
| ! | GGAACCTTGGTTCGTAAATT+CGG | + | chr4_2:64601883-64601902 | Msa0615190:CDS | 40.0% |
| AAGACCGAATTTACGAACCA+AGG | - | chr4_2:64601890-64601909 | None:intergenic | 40.0% | |
| !! | TTTCAAGCCTTGTTTCTTGG+AGG | + | chr4_2:64602243-64602262 | Msa0615190:CDS | 40.0% |
| ATCTACACCTCCAAGAAACA+AGG | - | chr4_2:64602253-64602272 | None:intergenic | 40.0% | |
| !! | TGAGATGAGTTGGGTTGAAT+CGG | + | chr4_2:64602335-64602354 | Msa0615190:CDS | 40.0% |
| ! | GTTTCAAGTGGTTCGTCTTT+CGG | - | chr4_2:64602381-64602400 | None:intergenic | 40.0% |
| TGGCCTATGTTTCATGATGA+TGG | + | chr4_2:64602495-64602514 | Msa0615190:CDS | 40.0% | |
| GCACCATCATCATGAAACAT+AGG | - | chr4_2:64602501-64602520 | None:intergenic | 40.0% | |
| CTATCCATTATGCCACCATA+AGG | - | chr4_2:64602549-64602568 | None:intergenic | 40.0% | |
| TTGGCATCAAGAAAGTGATG+AGG | + | chr4_2:64602638-64602657 | Msa0615190:CDS | 40.0% | |
| TACCTTCTCTCATGTGTTCA+AGG | + | chr4_2:64602910-64602929 | Msa0615190:CDS | 40.0% | |
| ACCTTCTCTCATGTGTTCAA+GGG | + | chr4_2:64602911-64602930 | Msa0615190:CDS | 40.0% | |
| ! | TGAGTAAGAGGAATTGGCTT+TGG | - | chr4_2:64601476-64601495 | None:intergenic | 40.0% |
| ! | AAGAGGTTTAGGTGTTGTGT+TGG | - | chr4_2:64601539-64601558 | None:intergenic | 40.0% |
| !! | CTCTGAAGTTTGTGAGATCA+AGG | - | chr4_2:64601702-64601721 | None:intergenic | 40.0% |
| ATGTAGAAAGCAGAACAGCT+TGG | + | chr4_2:64601734-64601753 | Msa0615190:CDS | 40.0% | |
| TGTAGAAAGCAGAACAGCTT+GGG | + | chr4_2:64601735-64601754 | Msa0615190:CDS | 40.0% | |
| GTTCAATCTGGTGCAACAAT+TGG | + | chr4_2:64601757-64601776 | Msa0615190:CDS | 40.0% | |
| GAATGTCCTACTATAGGTGT+TGG | + | chr4_2:64601835-64601854 | Msa0615190:CDS | 40.0% | |
| ! | GGAACCTTGGTTCGTAAATT+CGG | + | chr4_2:64601883-64601902 | Msa0615190:CDS | 40.0% |
| AAGACCGAATTTACGAACCA+AGG | - | chr4_2:64601890-64601909 | None:intergenic | 40.0% | |
| !! | TTTCAAGCCTTGTTTCTTGG+AGG | + | chr4_2:64602243-64602262 | Msa0615190:CDS | 40.0% |
| ATCTACACCTCCAAGAAACA+AGG | - | chr4_2:64602253-64602272 | None:intergenic | 40.0% | |
| !! | TGAGATGAGTTGGGTTGAAT+CGG | + | chr4_2:64602335-64602354 | Msa0615190:CDS | 40.0% |
| ! | GTTTCAAGTGGTTCGTCTTT+CGG | - | chr4_2:64602381-64602400 | None:intergenic | 40.0% |
| TGGCCTATGTTTCATGATGA+TGG | + | chr4_2:64602495-64602514 | Msa0615190:CDS | 40.0% | |
| GCACCATCATCATGAAACAT+AGG | - | chr4_2:64602501-64602520 | None:intergenic | 40.0% | |
| CTATCCATTATGCCACCATA+AGG | - | chr4_2:64602549-64602568 | None:intergenic | 40.0% | |
| TTGGCATCAAGAAAGTGATG+AGG | + | chr4_2:64602638-64602657 | Msa0615190:CDS | 40.0% | |
| TACCTTCTCTCATGTGTTCA+AGG | + | chr4_2:64602910-64602929 | Msa0615190:CDS | 40.0% | |
| ACCTTCTCTCATGTGTTCAA+GGG | + | chr4_2:64602911-64602930 | Msa0615190:CDS | 40.0% | |
| GGATTCGAATCTGCAGGTTA+TGG | - | chr4_2:64601621-64601640 | None:intergenic | 45.0% | |
| AGAACAGCTTGGGTTCAATC+TGG | + | chr4_2:64601745-64601764 | Msa0615190:CDS | 45.0% | |
| ! | CACCCGGAAAACCAAGATTT+TGG | - | chr4_2:64601813-64601832 | None:intergenic | 45.0% |
| !! | CAAAATCTTGGTTTTCCGGG+TGG | + | chr4_2:64601811-64601830 | Msa0615190:CDS | 45.0% |
| ATAGTAGGACATTCACCACC+CGG | - | chr4_2:64601829-64601848 | None:intergenic | 45.0% | |
| GGTGGTGAATGTCCTACTAT+AGG | + | chr4_2:64601829-64601848 | Msa0615190:CDS | 45.0% | |
| !! | TGTCCTACTATAGGTGTTGG+TGG | + | chr4_2:64601838-64601857 | Msa0615190:CDS | 45.0% |
| TGTCCACCAACACCTATAGT+AGG | - | chr4_2:64601844-64601863 | None:intergenic | 45.0% | |
| ! | TTTTGGGCTATTAGAGGTGG+TGG | + | chr4_2:64601991-64602010 | Msa0615190:CDS | 45.0% |
| CAAGAGAAGTTTCCTGAGCT+TGG | + | chr4_2:64602291-64602310 | Msa0615190:CDS | 45.0% | |
| GAAGTTTCCTGAGCTTGGTT+TGG | + | chr4_2:64602296-64602315 | Msa0615190:CDS | 45.0% | |
| TCTCTAACCAAACCAAGCTC+AGG | - | chr4_2:64602306-64602325 | None:intergenic | 45.0% | |
| CGTCTTTCGGAAACCCATAA+AGG | - | chr4_2:64602368-64602387 | None:intergenic | 45.0% | |
| CTGTTGAGCAACGTTTCAAG+TGG | - | chr4_2:64602393-64602412 | None:intergenic | 45.0% | |
| CAACAGAACACTAGCTGCAA+AGG | + | chr4_2:64602407-64602426 | Msa0615190:CDS | 45.0% | |
| ! | TGATGGTGCCAAAGATGCTA+TGG | + | chr4_2:64602512-64602531 | Msa0615190:CDS | 45.0% |
| GCATCAAGAAAGTGATGAGG+TGG | + | chr4_2:64602641-64602660 | Msa0615190:CDS | 45.0% | |
| TCCCTTGAACACATGAGAGA+AGG | - | chr4_2:64602915-64602934 | None:intergenic | 45.0% | |
| GGATTCGAATCTGCAGGTTA+TGG | - | chr4_2:64601621-64601640 | None:intergenic | 45.0% | |
| AGAACAGCTTGGGTTCAATC+TGG | + | chr4_2:64601745-64601764 | Msa0615190:CDS | 45.0% | |
| ! | CACCCGGAAAACCAAGATTT+TGG | - | chr4_2:64601813-64601832 | None:intergenic | 45.0% |
| !! | CAAAATCTTGGTTTTCCGGG+TGG | + | chr4_2:64601811-64601830 | Msa0615190:CDS | 45.0% |
| ATAGTAGGACATTCACCACC+CGG | - | chr4_2:64601829-64601848 | None:intergenic | 45.0% | |
| GGTGGTGAATGTCCTACTAT+AGG | + | chr4_2:64601829-64601848 | Msa0615190:CDS | 45.0% | |
| !! | TGTCCTACTATAGGTGTTGG+TGG | + | chr4_2:64601838-64601857 | Msa0615190:CDS | 45.0% |
| TGTCCACCAACACCTATAGT+AGG | - | chr4_2:64601844-64601863 | None:intergenic | 45.0% | |
| ! | TTTTGGGCTATTAGAGGTGG+TGG | + | chr4_2:64601991-64602010 | Msa0615190:CDS | 45.0% |
| CAAGAGAAGTTTCCTGAGCT+TGG | + | chr4_2:64602291-64602310 | Msa0615190:CDS | 45.0% | |
| GAAGTTTCCTGAGCTTGGTT+TGG | + | chr4_2:64602296-64602315 | Msa0615190:CDS | 45.0% | |
| TCTCTAACCAAACCAAGCTC+AGG | - | chr4_2:64602306-64602325 | None:intergenic | 45.0% | |
| CGTCTTTCGGAAACCCATAA+AGG | - | chr4_2:64602368-64602387 | None:intergenic | 45.0% | |
| CTGTTGAGCAACGTTTCAAG+TGG | - | chr4_2:64602393-64602412 | None:intergenic | 45.0% | |
| CAACAGAACACTAGCTGCAA+AGG | + | chr4_2:64602407-64602426 | Msa0615190:CDS | 45.0% | |
| ! | TGATGGTGCCAAAGATGCTA+TGG | + | chr4_2:64602512-64602531 | Msa0615190:CDS | 45.0% |
| GCATCAAGAAAGTGATGAGG+TGG | + | chr4_2:64602641-64602660 | Msa0615190:CDS | 45.0% | |
| TCCCTTGAACACATGAGAGA+AGG | - | chr4_2:64602915-64602934 | None:intergenic | 45.0% | |
| CTGCAGATTCGAATCCGAAG+CGG | + | chr4_2:64601625-64601644 | Msa0615190:CDS | 50.0% | |
| CTGCAGATTCGAATCCGAAG+CGG | + | chr4_2:64601625-64601644 | Msa0615190:CDS | 50.0% | |
| CGCTTCGGATTCGAATCTGC+AGG | - | chr4_2:64601627-64601646 | None:intergenic | 55.0% | |
| CAGATTCGAATCCGAAGCGG+TGG | + | chr4_2:64601628-64601647 | Msa0615190:CDS | 55.0% | |
| CAAAGTCATGGCCACCGCTT+CGG | - | chr4_2:64601642-64601661 | None:intergenic | 55.0% | |
| AAGCGGTGGCCATGACTTTG+AGG | + | chr4_2:64601642-64601661 | Msa0615190:CDS | 55.0% | |
| AGCGGTGGCCATGACTTTGA+GGG | + | chr4_2:64601643-64601662 | Msa0615190:CDS | 55.0% | |
| ! | GTGGCCATGACTTTGAGGGT+CGG | + | chr4_2:64601647-64601666 | Msa0615190:CDS | 55.0% |
| AGGACCGACCCTCAAAGTCA+TGG | - | chr4_2:64601654-64601673 | None:intergenic | 55.0% | |
| !! | GGTGTTGGTGGACACATCAG+TGG | + | chr4_2:64601850-64601869 | Msa0615190:CDS | 55.0% |
| ! | GTTGGTGGACACATCAGTGG+CGG | + | chr4_2:64601853-64601872 | Msa0615190:CDS | 55.0% |
| ! | TGGGCTATTAGAGGTGGTGG+AGG | + | chr4_2:64601994-64602013 | Msa0615190:CDS | 55.0% |
| !!! | GGTGGTGGAGGAGCAAGTTT+TGG | + | chr4_2:64602006-64602025 | Msa0615190:CDS | 55.0% |
| CGCTTCGGATTCGAATCTGC+AGG | - | chr4_2:64601627-64601646 | None:intergenic | 55.0% | |
| CAGATTCGAATCCGAAGCGG+TGG | + | chr4_2:64601628-64601647 | Msa0615190:CDS | 55.0% | |
| CAAAGTCATGGCCACCGCTT+CGG | - | chr4_2:64601642-64601661 | None:intergenic | 55.0% | |
| AAGCGGTGGCCATGACTTTG+AGG | + | chr4_2:64601642-64601661 | Msa0615190:CDS | 55.0% | |
| AGCGGTGGCCATGACTTTGA+GGG | + | chr4_2:64601643-64601662 | Msa0615190:CDS | 55.0% | |
| ! | GTGGCCATGACTTTGAGGGT+CGG | + | chr4_2:64601647-64601666 | Msa0615190:CDS | 55.0% |
| AGGACCGACCCTCAAAGTCA+TGG | - | chr4_2:64601654-64601673 | None:intergenic | 55.0% | |
| !! | GGTGTTGGTGGACACATCAG+TGG | + | chr4_2:64601850-64601869 | Msa0615190:CDS | 55.0% |
| ! | GTTGGTGGACACATCAGTGG+CGG | + | chr4_2:64601853-64601872 | Msa0615190:CDS | 55.0% |
| ! | TGGGCTATTAGAGGTGGTGG+AGG | + | chr4_2:64601994-64602013 | Msa0615190:CDS | 55.0% |
| !!! | GGTGGTGGAGGAGCAAGTTT+TGG | + | chr4_2:64602006-64602025 | Msa0615190:CDS | 55.0% |
| GGTGGACACATCAGTGGCGG+CGG | + | chr4_2:64601856-64601875 | Msa0615190:CDS | 65.0% | |
| CACATCAGTGGCGGCGGCTA+TGG | + | chr4_2:64601862-64601881 | Msa0615190:CDS | 65.0% | |
| TGGCGGCGGCTATGGAACCT+TGG | + | chr4_2:64601870-64601889 | Msa0615190:CDS | 65.0% | |
| GGTGGACACATCAGTGGCGG+CGG | + | chr4_2:64601856-64601875 | Msa0615190:CDS | 65.0% | |
| CACATCAGTGGCGGCGGCTA+TGG | + | chr4_2:64601862-64601881 | Msa0615190:CDS | 65.0% | |
| TGGCGGCGGCTATGGAACCT+TGG | + | chr4_2:64601870-64601889 | Msa0615190:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 64601316 | 64602953 | 64601316 | ID=Msa0615190;Name=Msa0615190 |
| chr4_2 | mRNA | 64601316 | 64602953 | 64601316 | ID=Msa0615190-mRNA-1;Parent=Msa0615190;Name=Msa0615190-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|545 |
| chr4_2 | exon | 64601316 | 64602953 | 64601316 | ID=Msa0615190-mRNA-1:exon:18109;Parent=Msa0615190-mRNA-1 |
| chr4_2 | CDS | 64601316 | 64602953 | 64601316 | ID=Msa0615190-mRNA-1:cds;Parent=Msa0615190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
