Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615520 | XP_013457345.1 | 97.368 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 1.59e-100 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615520 | sp|O64702|HMG14_ARATH | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 5.03e-50 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0615520 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615520 | Msa0698570 | 0.956261 | 4.472588e-114 | -8.615850e-47 |
| Msa0615520 | Msa0698590 | 0.817111 | 3.906381e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615520 | MtrunA17_Chr4g0052011 | 97.368 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 1.46e-104 | 295 |
| Msa0615520 | MtrunA17_Chr8g0370431 | 46.067 | 89 | 48 | 0 | 59 | 147 | 33 | 121 | 8.22e-24 | 90.5 |
| Msa0615520 | MtrunA17_Chr3g0143991 | 47.674 | 86 | 45 | 0 | 53 | 138 | 35 | 120 | 2.42e-23 | 89.4 |
| Msa0615520 | MtrunA17_Chr7g0242251 | 51.316 | 76 | 37 | 0 | 59 | 134 | 47 | 122 | 1.47e-22 | 87.8 |
| Msa0615520 | MtrunA17_Chr1g0212341 | 48.315 | 89 | 45 | 1 | 59 | 146 | 98 | 186 | 8.54e-22 | 87.0 |
| Msa0615520 | MtrunA17_Chr5g0407011 | 38.272 | 81 | 50 | 0 | 52 | 132 | 25 | 105 | 3.55e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615520 | AT2G34450.4 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 5.11e-51 | 160 |
| Msa0615520 | AT2G34450.3 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 5.11e-51 | 160 |
| Msa0615520 | AT2G34450.1 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 5.11e-51 | 160 |
| Msa0615520 | AT2G34450.2 | 55.556 | 153 | 65 | 3 | 1 | 151 | 1 | 152 | 3.43e-49 | 155 |
| Msa0615520 | AT2G17560.3 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 8.71e-24 | 90.5 |
| Msa0615520 | AT2G17560.2 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 9.27e-24 | 90.5 |
| Msa0615520 | AT2G17560.1 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 9.27e-24 | 90.5 |
| Msa0615520 | AT3G51880.4 | 44.554 | 101 | 56 | 0 | 50 | 150 | 40 | 140 | 1.65e-23 | 90.5 |
| Msa0615520 | AT3G51880.5 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.13e-23 | 90.5 |
| Msa0615520 | AT3G51880.1 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.13e-23 | 90.5 |
| Msa0615520 | AT3G51880.3 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.13e-23 | 90.5 |
| Msa0615520 | AT3G51880.2 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.33e-23 | 90.9 |
| Msa0615520 | AT1G20693.3 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 5.19e-22 | 86.3 |
| Msa0615520 | AT1G20693.1 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 5.32e-22 | 86.3 |
| Msa0615520 | AT4G35570.1 | 44.318 | 88 | 49 | 0 | 59 | 146 | 30 | 117 | 5.77e-22 | 85.5 |
| Msa0615520 | AT4G35570.2 | 44.318 | 88 | 49 | 0 | 59 | 146 | 30 | 117 | 5.77e-22 | 85.5 |
| Msa0615520 | AT1G20693.2 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 1.22e-21 | 85.1 |
| Msa0615520 | AT1G20696.1 | 45.556 | 90 | 47 | 1 | 59 | 148 | 31 | 118 | 8.03e-21 | 82.8 |
| Msa0615520 | AT1G20696.2 | 44.156 | 77 | 43 | 0 | 59 | 135 | 31 | 107 | 5.12e-18 | 75.9 |
| Msa0615520 | AT1G20696.5 | 44.156 | 77 | 43 | 0 | 59 | 135 | 31 | 107 | 5.38e-18 | 75.5 |
| Msa0615520 | AT5G23420.1 | 47.059 | 68 | 35 | 1 | 60 | 127 | 112 | 178 | 6.51e-13 | 64.3 |
| Msa0615520 | AT1G20696.4 | 43.243 | 74 | 40 | 1 | 75 | 148 | 5 | 76 | 4.74e-12 | 59.3 |
| Msa0615520 | AT1G20696.3 | 43.243 | 74 | 40 | 1 | 75 | 148 | 5 | 76 | 1.29e-11 | 58.2 |
Find 34 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCTTAAAATTGCAGTTT+TGG | 0.234894 | 4_2:+65007676 | Msa0615520:three_prime_UTR |
| ATCAAATTCTGCACGTTTCT+CGG | 0.263566 | 4_2:-65007318 | None:intergenic |
| GAAGACCCTGATTCCAAGTT+TGG | 0.294181 | 4_2:-65007740 | None:intergenic |
| TCTTCTTCGGCCTCCACCTC+CGG | 0.314496 | 4_2:+65004564 | Msa0615520:CDS |
| GACAGAGTATAACAAGAAAA+TGG | 0.358050 | 4_2:+65007349 | Msa0615520:CDS |
| TTCACAGACAGTGTGGTTGC+AGG | 0.361442 | 4_2:+65004478 | Msa0615520:five_prime_UTR |
| TTAAGTCTCTTGACTTAGTC+TGG | 0.383960 | 4_2:-65005186 | None:intergenic |
| ACAATTGAATATACAACTTA+AGG | 0.404428 | 4_2:-65007576 | None:intergenic |
| TCAAAAGAACGCTTCTTCTT+CGG | 0.408803 | 4_2:+65004551 | Msa0615520:CDS |
| TCACGCATTGACTTAACATC+TGG | 0.420177 | 4_2:-65005969 | None:intergenic |
| TATTGAGTAAACTGAATAGA+AGG | 0.428614 | 4_2:+65007706 | Msa0615520:three_prime_UTR |
| TATTCAATTGTAGTCAGCTC+TGG | 0.466116 | 4_2:+65007588 | Msa0615520:three_prime_UTR |
| CTTCTTCGGCCTCCACCTCC+GGG | 0.468963 | 4_2:+65004565 | Msa0615520:CDS |
| AGTGAAAGGGTACCCGGAGG+TGG | 0.487598 | 4_2:-65004577 | None:intergenic |
| TTTAAGCATCTAACTAACAT+AGG | 0.495752 | 4_2:-65007663 | None:intergenic |
| CGAGTAGTTTCAATTAACAT+AGG | 0.500098 | 4_2:-65007549 | None:intergenic |
| GAAAGGGTACCCGGAGGTGG+AGG | 0.521126 | 4_2:-65004574 | None:intergenic |
| TCACAGACAGTGTGGTTGCA+GGG | 0.527449 | 4_2:+65004479 | Msa0615520:five_prime_UTR |
| GCAAGGCATGTGGAGAGAAG+TGG | 0.571530 | 4_2:+65006266 | Msa0615520:CDS |
| CGTGTTCATACAGATTGGCA+AGG | 0.572075 | 4_2:+65006249 | Msa0615520:intron |
| AAGAAGTAGAAGAAAGCAGT+GGG | 0.576065 | 4_2:-65005268 | None:intergenic |
| GTTGGCGATCAAATCGAATG+AGG | 0.587280 | 4_2:+65005144 | Msa0615520:CDS |
| GAAGTAGAAGAAAGCAGTGG+GGG | 0.593069 | 4_2:-65005266 | None:intergenic |
| TCTGATGCTTTGCAGGAAAG+CGG | 0.595152 | 4_2:+65007444 | Msa0615520:intron |
| CAAGAAAATGAATAAACTGA+AGG | 0.601062 | 4_2:-65007512 | None:intergenic |
| ATACAGATTGGCAAGGCATG+TGG | 0.602187 | 4_2:+65006256 | Msa0615520:intron |
| CGAATATGAAGAAACTGATG+AGG | 0.603289 | 4_2:+65007467 | Msa0615520:CDS |
| TGATAGTTGAGAAGCACCAA+TGG | 0.611816 | 4_2:+65004503 | Msa0615520:exon |
| TTGGCGATCAAATCGAATGA+GGG | 0.633911 | 4_2:+65005145 | Msa0615520:CDS |
| CAAGAAGTAGAAGAAAGCAG+TGG | 0.644048 | 4_2:-65005269 | None:intergenic |
| TTCGCATTTCACAGACAGTG+TGG | 0.663483 | 4_2:+65004471 | Msa0615520:five_prime_UTR |
| ATGTTAATTGAAACTACTCG+AGG | 0.664773 | 4_2:+65007552 | Msa0615520:three_prime_UTR |
| AAGTAGAAGAAAGCAGTGGG+GGG | 0.691336 | 4_2:-65005265 | None:intergenic |
| AGAAGTAGAAGAAAGCAGTG+GGG | 0.730489 | 4_2:-65005267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATGTTATTTTTAAATTA+AGG | - | chr4_2:65004410-65004429 | None:intergenic | 10.0% |
| !! | ATAAATTAAGTTTCAAAAAT+TGG | + | chr4_2:65006398-65006417 | Msa0615520:intron | 10.0% |
| !! | ATAAATTATGTTTCAAAAAT+TGG | + | chr4_2:65006473-65006492 | Msa0615520:intron | 10.0% |
| !! | TTGTTATATTTGAAAAAAAT+TGG | + | chr4_2:65006630-65006649 | Msa0615520:intron | 10.0% |
| !! | TAAAAAAAATTAAAGTAAAG+GGG | + | chr4_2:65006993-65007012 | Msa0615520:intron | 10.0% |
| !!! | AATAAAAGCAGTTTTTTTTA+GGG | - | chr4_2:65004387-65004406 | None:intergenic | 15.0% |
| !! | TCATTCAAGTAAAAAATTAT+TGG | + | chr4_2:65004881-65004900 | Msa0615520:intron | 15.0% |
| !!! | CGATTTTTATGTTTAATTAT+TGG | + | chr4_2:65006835-65006854 | Msa0615520:intron | 15.0% |
| !! | AAAAATGATAATTATTCACA+AGG | - | chr4_2:65007618-65007637 | None:intergenic | 15.0% |
| !!! | ATAAAAGCAGTTTTTTTTAG+GGG | - | chr4_2:65004386-65004405 | None:intergenic | 20.0% |
| !!! | GAATAAAAGCAGTTTTTTTT+AGG | - | chr4_2:65004388-65004407 | None:intergenic | 20.0% |
| !! | AATAAGCAGAAAACAATTTA+TGG | - | chr4_2:65004697-65004716 | None:intergenic | 20.0% |
| !!! | AAATTGATTTTTAGACCTAT+AGG | + | chr4_2:65004810-65004829 | Msa0615520:intron | 20.0% |
| !!! | AATTGATTTTTAGACCTATA+GGG | + | chr4_2:65004811-65004830 | Msa0615520:intron | 20.0% |
| !! | TTGTAAAAATTAGAAGATTC+AGG | + | chr4_2:65004854-65004873 | Msa0615520:intron | 20.0% |
| !! | TGTAAAAATTAGAAGATTCA+GGG | + | chr4_2:65004855-65004874 | Msa0615520:intron | 20.0% |
| !!! | CCATCATTTTATTCAATTTT+GGG | - | chr4_2:65004974-65004993 | None:intergenic | 20.0% |
| !! | AAAATTGAATAAAATGATGG+CGG | + | chr4_2:65004974-65004993 | Msa0615520:intron | 20.0% |
| !! | AACATCATAAATAAAGAACA+AGG | - | chr4_2:65005314-65005333 | None:intergenic | 20.0% |
| !!! | AATTTAGAACAAATGGAAAA+TGG | - | chr4_2:65005376-65005395 | None:intergenic | 20.0% |
| !!! | CCATAAAAATTTAGAACAAA+TGG | - | chr4_2:65005383-65005402 | None:intergenic | 20.0% |
| !!! | CCATTTGTTCTAAATTTTTA+TGG | + | chr4_2:65005380-65005399 | Msa0615520:intron | 20.0% |
| !! | ACTACTATTTACAGTATATT+TGG | + | chr4_2:65005789-65005808 | Msa0615520:intron | 20.0% |
| !!! | ACAATTGCTTCTTTTTTATA+TGG | + | chr4_2:65005853-65005872 | Msa0615520:intron | 20.0% |
| !!! | ATAACTGGCAATTTTTAAAA+TGG | - | chr4_2:65006130-65006149 | None:intergenic | 20.0% |
| !! | TCTCAAAAACATAAAATAAC+TGG | - | chr4_2:65006145-65006164 | None:intergenic | 20.0% |
| !! | TTTGAAAAAAATTGGAAAGT+TGG | + | chr4_2:65006638-65006657 | Msa0615520:intron | 20.0% |
| !! | TTATGTTTAATTATTGGTGT+TGG | + | chr4_2:65006841-65006860 | Msa0615520:intron | 20.0% |
| !!! | AAACTAGTTCTATATTGATT+TGG | - | chr4_2:65007139-65007158 | None:intergenic | 20.0% |
| !! | AGATCAAATTGAACATAATA+TGG | - | chr4_2:65007210-65007229 | None:intergenic | 20.0% |
| !!! | TATTCATTTTCTTGTTTACA+AGG | + | chr4_2:65007521-65007540 | Msa0615520:three_prime_UTR | 20.0% |
| !! | ACAATTGAATATACAACTTA+AGG | - | chr4_2:65007579-65007598 | None:intergenic | 20.0% |
| !!! | TAAAAGCAGTTTTTTTTAGG+GGG | - | chr4_2:65004385-65004404 | None:intergenic | 25.0% |
| ! | CTAACTTTCTTCTATAGTTA+CGG | + | chr4_2:65004647-65004666 | Msa0615520:intron | 25.0% |
| !!! | TTTAATTTTCAGAAGCTCTT+CGG | + | chr4_2:65004784-65004803 | Msa0615520:intron | 25.0% |
| !!! | TTATTCAATTTTGGGTCTAA+GGG | - | chr4_2:65004966-65004985 | None:intergenic | 25.0% |
| !!! | TTTATTCAATTTTGGGTCTA+AGG | - | chr4_2:65004967-65004986 | None:intergenic | 25.0% |
| ! | CCCAAAATTGAATAAAATGA+TGG | + | chr4_2:65004971-65004990 | Msa0615520:intron | 25.0% |
| !! | GCCATCATTTTATTCAATTT+TGG | - | chr4_2:65004975-65004994 | None:intergenic | 25.0% |
| ! | ATCATAAATAAAGAACAAGG+AGG | - | chr4_2:65005311-65005330 | None:intergenic | 25.0% |
| ! | TAGTAATGAACCAGTAATTA+TGG | - | chr4_2:65005477-65005496 | None:intergenic | 25.0% |
| ! | AATAAGACATAGTAGAAACA+AGG | - | chr4_2:65005752-65005771 | None:intergenic | 25.0% |
| ! | TTCAAAATTACTGTGTTTAC+TGG | + | chr4_2:65005891-65005910 | Msa0615520:intron | 25.0% |
| !!! | AAGTTCTTTTTCATTCTGAA+GGG | + | chr4_2:65005914-65005933 | Msa0615520:intron | 25.0% |
| ! | TAGACGAAATATTAATACGA+CGG | - | chr4_2:65006009-65006028 | None:intergenic | 25.0% |
| !! | AATTCAGGTTAAATATGCAA+GGG | - | chr4_2:65006332-65006351 | None:intergenic | 25.0% |
| !! | TAACCTGAATTGTGTTATTA+TGG | + | chr4_2:65006341-65006360 | Msa0615520:intron | 25.0% |
| !! | GAATTTTGTCAAAACTGTTT+AGG | + | chr4_2:65006502-65006521 | Msa0615520:intron | 25.0% |
| !!! | AACTGTTTAGGTTTTTAATG+TGG | + | chr4_2:65006514-65006533 | Msa0615520:intron | 25.0% |
| !!! | ATCAGTTTTTTGACTCATTT+AGG | + | chr4_2:65006793-65006812 | Msa0615520:intron | 25.0% |
| !!! | TCAGTTTTTTGACTCATTTA+GGG | + | chr4_2:65006794-65006813 | Msa0615520:intron | 25.0% |
| ! | ATTATAAAGACACGTAAACT+GGG | - | chr4_2:65006957-65006976 | None:intergenic | 25.0% |
| ! | TAACAAAAATTGTATCTGAC+AGG | + | chr4_2:65007268-65007287 | Msa0615520:intron | 25.0% |
| ! | CAAGAAAATGAATAAACTGA+AGG | - | chr4_2:65007515-65007534 | None:intergenic | 25.0% |
| ! | TTTAAGCATCTAACTAACAT+AGG | - | chr4_2:65007666-65007685 | None:intergenic | 25.0% |
| !! | ATGCTTAAAATTGCAGTTTT+GGG | + | chr4_2:65007677-65007696 | Msa0615520:three_prime_UTR | 25.0% |
| ! | TATTGAGTAAACTGAATAGA+AGG | + | chr4_2:65007706-65007725 | Msa0615520:three_prime_UTR | 25.0% |
| !!! | AAAAGCAGTTTTTTTTAGGG+GGG | - | chr4_2:65004384-65004403 | None:intergenic | 30.0% |
| TCGTTGTTGTAGCAAAAAAT+AGG | + | chr4_2:65004440-65004459 | Msa0615520:five_prime_UTR | 30.0% | |
| ! | TTAATTTTCAGAAGCTCTTC+GGG | + | chr4_2:65004785-65004804 | Msa0615520:intron | 30.0% |
| TAGACCTATAGGGATATTAA+TGG | + | chr4_2:65004821-65004840 | Msa0615520:intron | 30.0% | |
| AAAAGTAGCACCATAATTAC+TGG | + | chr4_2:65005464-65005483 | Msa0615520:intron | 30.0% | |
| !!! | GTATTTTACGGATTTTGACT+TGG | + | chr4_2:65005583-65005602 | Msa0615520:intron | 30.0% |
| GCTAATTGCTAATCAACAAA+TGG | - | chr4_2:65005631-65005650 | None:intergenic | 30.0% | |
| AAAACATGTTTGAAGATGAG+TGG | - | chr4_2:65005685-65005704 | None:intergenic | 30.0% | |
| ATAGTAGTATGATTGAGCAA+AGG | - | chr4_2:65005777-65005796 | None:intergenic | 30.0% | |
| TTACAGTATATTTGGCATTG+TGG | + | chr4_2:65005797-65005816 | Msa0615520:intron | 30.0% | |
| !! | GAAGTTCTTTTTCATTCTGA+AGG | + | chr4_2:65005913-65005932 | Msa0615520:intron | 30.0% |
| TGTAAAACAAAGTTGCTTCA+GGG | - | chr4_2:65006055-65006074 | None:intergenic | 30.0% | |
| TTGTAAAACAAAGTTGCTTC+AGG | - | chr4_2:65006056-65006075 | None:intergenic | 30.0% | |
| ! | AACAATGATGATGATGATGA+TGG | - | chr4_2:65006180-65006199 | None:intergenic | 30.0% |
| ! | CAATTCAGGTTAAATATGCA+AGG | - | chr4_2:65006333-65006352 | None:intergenic | 30.0% |
| CAACCATAATAACACAATTC+AGG | - | chr4_2:65006347-65006366 | None:intergenic | 30.0% | |
| ! | TATGTTTCAAAAATTGGCTC+AGG | + | chr4_2:65006479-65006498 | Msa0615520:intron | 30.0% |
| ! | ATGTTTCAAAAATTGGCTCA+GGG | + | chr4_2:65006480-65006499 | Msa0615520:intron | 30.0% |
| ATTAACACGAGTACATTTGT+AGG | + | chr4_2:65006868-65006887 | Msa0615520:intron | 30.0% | |
| GATTATAAAGACACGTAAAC+TGG | - | chr4_2:65006958-65006977 | None:intergenic | 30.0% | |
| !! | TGGATGGTATTTTAGAAAAC+TGG | - | chr4_2:65007026-65007045 | None:intergenic | 30.0% |
| !! | TTCTAAAATACCATCCATTG+TGG | + | chr4_2:65007029-65007048 | Msa0615520:intron | 30.0% |
| ! | ATTTGGAATAAATAGCAGCA+CGG | - | chr4_2:65007122-65007141 | None:intergenic | 30.0% |
| GACAGAGTATAACAAGAAAA+TGG | + | chr4_2:65007349-65007368 | Msa0615520:CDS | 30.0% | |
| TAACCTATCTGTCATATTCA+TGG | + | chr4_2:65007372-65007391 | Msa0615520:intron | 30.0% | |
| CGAGTAGTTTCAATTAACAT+AGG | - | chr4_2:65007552-65007571 | None:intergenic | 30.0% | |
| ATGTTAATTGAAACTACTCG+AGG | + | chr4_2:65007552-65007571 | Msa0615520:three_prime_UTR | 30.0% | |
| ! | GATGCTTAAAATTGCAGTTT+TGG | + | chr4_2:65007676-65007695 | Msa0615520:three_prime_UTR | 30.0% |
| ! | GGTATTTCTTTTACCAAACT+TGG | + | chr4_2:65007727-65007746 | Msa0615520:three_prime_UTR | 30.0% |
| ! | TTTTACCAAACTTGGAATCA+GGG | + | chr4_2:65007735-65007754 | Msa0615520:three_prime_UTR | 30.0% |
| TCAAAAGAACGCTTCTTCTT+CGG | + | chr4_2:65004551-65004570 | Msa0615520:CDS | 35.0% | |
| TTTCTTCTATAGTTACGGTC+TGG | + | chr4_2:65004652-65004671 | Msa0615520:intron | 35.0% | |
| !! | CTTATTTTCACAAGCTCTTC+AGG | + | chr4_2:65004711-65004730 | Msa0615520:intron | 35.0% |
| CACTCCATTAATATCCCTAT+AGG | - | chr4_2:65004828-65004847 | None:intergenic | 35.0% | |
| TTATGACCAATGCGCAATTT+AGG | - | chr4_2:65004911-65004930 | None:intergenic | 35.0% | |
| ! | GCGCATTGGTCATAATAAAA+AGG | + | chr4_2:65004916-65004935 | Msa0615520:intron | 35.0% |
| ! | AATGCTGCATTGAGTTTTTC+AGG | + | chr4_2:65005113-65005132 | Msa0615520:intron | 35.0% |
| !!! | GTTTTTCAGGAAACTAGTGT+TGG | + | chr4_2:65005126-65005145 | Msa0615520:intron | 35.0% |
| TTAAGTCTCTTGACTTAGTC+TGG | - | chr4_2:65005189-65005208 | None:intergenic | 35.0% | |
| !!! | GTTCTTTTTTTGCACTGCTT+TGG | - | chr4_2:65005212-65005231 | None:intergenic | 35.0% |
| AAGAAGTAGAAGAAAGCAGT+GGG | - | chr4_2:65005271-65005290 | None:intergenic | 35.0% | |
| ACAAGAGTTTAGCTGCATTA+AGG | + | chr4_2:65005420-65005439 | Msa0615520:intron | 35.0% | |
| ! | TATACTATCGCGTAAGTTGA+TGG | + | chr4_2:65005550-65005569 | Msa0615520:intron | 35.0% |
| !! | ATACTATCGCGTAAGTTGAT+GGG | + | chr4_2:65005551-65005570 | Msa0615520:intron | 35.0% |
| !!! | TTTTACGGATTTTGACTTGG+AGG | + | chr4_2:65005586-65005605 | Msa0615520:intron | 35.0% |
| GACATAGTAGAAACAAGGAA+AGG | - | chr4_2:65005747-65005766 | None:intergenic | 35.0% | |
| !! | TTCTTTTTCATTCTGAAGGG+AGG | + | chr4_2:65005917-65005936 | Msa0615520:intron | 35.0% |
| GTAAAACAAAGTTGCTTCAG+GGG | - | chr4_2:65006054-65006073 | None:intergenic | 35.0% | |
| ! | GTGGAAAACAATGACTTTTG+AGG | + | chr4_2:65006285-65006304 | Msa0615520:CDS | 35.0% |
| TTGTCAGTTGTGATGTTTGA+CGG | + | chr4_2:65006432-65006451 | Msa0615520:intron | 35.0% | |
| AAGAAGTCATGATCAAGACA+TGG | - | chr4_2:65006561-65006580 | None:intergenic | 35.0% | |
| TGGAAAGTTGGAATTCATTG+CGG | + | chr4_2:65006650-65006669 | Msa0615520:intron | 35.0% | |
| CCATTGTCAGGAATTTAAAC+AGG | - | chr4_2:65007175-65007194 | None:intergenic | 35.0% | |
| CCTGTTTAAATTCCTGACAA+TGG | + | chr4_2:65007172-65007191 | Msa0615520:intron | 35.0% | |
| TCAATTTGATCTGAGCAAGA+AGG | + | chr4_2:65007218-65007237 | Msa0615520:intron | 35.0% | |
| ATCAAATTCTGCACGTTTCT+CGG | - | chr4_2:65007321-65007340 | None:intergenic | 35.0% | |
| TAGCCATGAATATGACAGAT+AGG | - | chr4_2:65007378-65007397 | None:intergenic | 35.0% | |
| ! | CTAGTGAACTGACTCTTATT+TGG | + | chr4_2:65007395-65007414 | Msa0615520:intron | 35.0% |
| !! | TTTGTTTTCTGATGCTTTGC+AGG | + | chr4_2:65007437-65007456 | Msa0615520:intron | 35.0% |
| CGAATATGAAGAAACTGATG+AGG | + | chr4_2:65007467-65007486 | Msa0615520:CDS | 35.0% | |
| TATTCAATTGTAGTCAGCTC+TGG | + | chr4_2:65007588-65007607 | Msa0615520:three_prime_UTR | 35.0% | |
| ! | CTTTTACCAAACTTGGAATC+AGG | + | chr4_2:65007734-65007753 | Msa0615520:three_prime_UTR | 35.0% |
| !! | TGATAGTTGAGAAGCACCAA+TGG | + | chr4_2:65004503-65004522 | Msa0615520:exon | 40.0% |
| !!! | GCTTTAGCTTTTTTCGCCAT+TGG | - | chr4_2:65004522-65004541 | None:intergenic | 40.0% |
| GGAGAGTAGAGAAAGTGAAA+GGG | - | chr4_2:65004593-65004612 | None:intergenic | 40.0% | |
| AGGAGAGTAGAGAAAGTGAA+AGG | - | chr4_2:65004594-65004613 | None:intergenic | 40.0% | |
| ! | TACTCTCCTTTTCGTTCACA+AGG | + | chr4_2:65004605-65004624 | Msa0615520:intron | 40.0% |
| ! | ACTCTCCTTTTCGTTCACAA+GGG | + | chr4_2:65004606-65004625 | Msa0615520:intron | 40.0% |
| CCAAGGCATAATTGCATTGT+TGG | - | chr4_2:65004943-65004962 | None:intergenic | 40.0% | |
| CCAACAATGCAATTATGCCT+TGG | + | chr4_2:65004940-65004959 | Msa0615520:intron | 40.0% | |
| TAGCTTCAGGTGTTAGTAGT+GGG | + | chr4_2:65005033-65005052 | Msa0615520:intron | 40.0% | |
| TTGGCGATCAAATCGAATGA+GGG | + | chr4_2:65005145-65005164 | Msa0615520:CDS | 40.0% | |
| AGAAGTAGAAGAAAGCAGTG+GGG | - | chr4_2:65005270-65005289 | None:intergenic | 40.0% | |
| CAAGAAGTAGAAGAAAGCAG+TGG | - | chr4_2:65005272-65005291 | None:intergenic | 40.0% | |
| ACTGATCTGTGTGTTTCCTT+TGG | + | chr4_2:65005524-65005543 | Msa0615520:intron | 40.0% | |
| ACGCGATAGTATAACTCCAA+AGG | - | chr4_2:65005543-65005562 | None:intergenic | 40.0% | |
| !! | TACTATCGCGTAAGTTGATG+GGG | + | chr4_2:65005552-65005571 | Msa0615520:intron | 40.0% |
| ! | GGGGGTTCTGTTGTATTTTA+CGG | + | chr4_2:65005571-65005590 | Msa0615520:intron | 40.0% |
| !! | CATTCTGAAGGGAGGATTTT+CGG | + | chr4_2:65005925-65005944 | Msa0615520:intron | 40.0% |
| !! | TCACGCATTGACTTAACATC+TGG | - | chr4_2:65005972-65005991 | None:intergenic | 40.0% |
| CAATCTGTATGAACACGGAA+AGG | - | chr4_2:65006246-65006265 | None:intergenic | 40.0% | |
| CTTTCCGTGTTCATACAGAT+TGG | + | chr4_2:65006244-65006263 | Msa0615520:intron | 40.0% | |
| CTTGCCAATCTGTATGAACA+CGG | - | chr4_2:65006251-65006270 | None:intergenic | 40.0% | |
| AGCAGAACTGAAGATCACTT+TGG | + | chr4_2:65006675-65006694 | Msa0615520:intron | 40.0% | |
| AGGTAAGTTTCCACAATGGA+TGG | - | chr4_2:65007042-65007061 | None:intergenic | 40.0% | |
| ATCCATTGTGGAAACTTACC+TGG | + | chr4_2:65007041-65007060 | Msa0615520:intron | 40.0% | |
| TCCATTGTGGAAACTTACCT+GGG | + | chr4_2:65007042-65007061 | Msa0615520:intron | 40.0% | |
| ATACTTGACACTCCATTGTC+AGG | - | chr4_2:65007187-65007206 | None:intergenic | 40.0% | |
| AACATAGAGCTCAACCAAAG+CGG | - | chr4_2:65007249-65007268 | None:intergenic | 40.0% | |
| TTCGCATTTCACAGACAGTG+TGG | + | chr4_2:65004471-65004490 | Msa0615520:five_prime_UTR | 45.0% | |
| !! | AGCGTTCTTTTGAGAGTGAG+AGG | - | chr4_2:65004544-65004563 | None:intergenic | 45.0% |
| !! | AGAGAAAGTGAAAGGGTACC+CGG | - | chr4_2:65004586-65004605 | None:intergenic | 45.0% |
| CCTTTCCCTTGTGAACGAAA+AGG | - | chr4_2:65004614-65004633 | None:intergenic | 45.0% | |
| ! | CCTTTTCGTTCACAAGGGAA+AGG | + | chr4_2:65004611-65004630 | Msa0615520:intron | 45.0% |
| GGAAGACCTAAATTGCGCAT+TGG | + | chr4_2:65004902-65004921 | Msa0615520:intron | 45.0% | |
| !! | AATTTTGGGTCTAAGGGCCA+AGG | - | chr4_2:65004960-65004979 | None:intergenic | 45.0% |
| TGTGAGTTTCAACCGTGTCT+AGG | + | chr4_2:65005000-65005019 | Msa0615520:intron | 45.0% | |
| ! | TAGAGGTGTAGACCTAGACA+CGG | - | chr4_2:65005015-65005034 | None:intergenic | 45.0% |
| CTACTAACACCTGAAGCTAG+AGG | - | chr4_2:65005032-65005051 | None:intergenic | 45.0% | |
| CTAGCTTCAGGTGTTAGTAG+TGG | + | chr4_2:65005032-65005051 | Msa0615520:intron | 45.0% | |
| AGCTTCAGGTGTTAGTAGTG+GGG | + | chr4_2:65005034-65005053 | Msa0615520:intron | 45.0% | |
| GTTGGCGATCAAATCGAATG+AGG | + | chr4_2:65005144-65005163 | Msa0615520:CDS | 45.0% | |
| AAGTAGAAGAAAGCAGTGGG+GGG | - | chr4_2:65005268-65005287 | None:intergenic | 45.0% | |
| GAAGTAGAAGAAAGCAGTGG+GGG | - | chr4_2:65005269-65005288 | None:intergenic | 45.0% | |
| !! | ACTATCGCGTAAGTTGATGG+GGG | + | chr4_2:65005553-65005572 | Msa0615520:intron | 45.0% |
| !!! | CGGATTTTGACTTGGAGGAA+TGG | + | chr4_2:65005591-65005610 | Msa0615520:intron | 45.0% |
| TCTCAGCTCTTGAACTTGAG+GGG | - | chr4_2:65005659-65005678 | None:intergenic | 45.0% | |
| GTCTCAGCTCTTGAACTTGA+GGG | - | chr4_2:65005660-65005679 | None:intergenic | 45.0% | |
| TGTCTCAGCTCTTGAACTTG+AGG | - | chr4_2:65005661-65005680 | None:intergenic | 45.0% | |
| TCTGTATGAACACGGAAAGG+AGG | - | chr4_2:65006243-65006262 | None:intergenic | 45.0% | |
| CGTGTTCATACAGATTGGCA+AGG | + | chr4_2:65006249-65006268 | Msa0615520:intron | 45.0% | |
| ATACAGATTGGCAAGGCATG+TGG | + | chr4_2:65006256-65006275 | Msa0615520:intron | 45.0% | |
| TCCCAGGTAAGTTTCCACAA+TGG | - | chr4_2:65007046-65007065 | None:intergenic | 45.0% | |
| TGGAAACTTACCTGGGACTA+AGG | + | chr4_2:65007049-65007068 | Msa0615520:intron | 45.0% | |
| TCTGATGCTTTGCAGGAAAG+CGG | + | chr4_2:65007444-65007463 | Msa0615520:intron | 45.0% | |
| GAAGACCCTGATTCCAAGTT+TGG | - | chr4_2:65007743-65007762 | None:intergenic | 45.0% | |
| !! | AATAAAAAAAATTAAAGTAA+AGG | + | chr4_2:65006991-65007010 | Msa0615520:intron | 5.0% |
| !! | ATAAAAAAAATTAAAGTAAA+GGG | + | chr4_2:65006992-65007011 | Msa0615520:intron | 5.0% |
| TTCACAGACAGTGTGGTTGC+AGG | + | chr4_2:65004478-65004497 | Msa0615520:five_prime_UTR | 50.0% | |
| TCACAGACAGTGTGGTTGCA+GGG | + | chr4_2:65004479-65004498 | Msa0615520:five_prime_UTR | 50.0% | |
| ! | AGGTCTACACCTCTAGCTTC+AGG | + | chr4_2:65005020-65005039 | Msa0615520:intron | 50.0% |
| AAAGCAGTGGGGGGTTTCTT+CGG | - | chr4_2:65005259-65005278 | None:intergenic | 50.0% | |
| CTCAGCTCTTGAACTTGAGG+GGG | - | chr4_2:65005658-65005677 | None:intergenic | 50.0% | |
| TCTCCTCTGGTTGGAATTCC+AGG | + | chr4_2:65006759-65006778 | Msa0615520:intron | 50.0% | |
| AACTGATGATCATGCCAGCC+TGG | - | chr4_2:65006780-65006799 | None:intergenic | 50.0% | |
| CACGTAAACTGGGTGCTCTA+AGG | - | chr4_2:65006947-65006966 | None:intergenic | 50.0% | |
| AGCTTCTTCTCGATAGCAGC+AGG | - | chr4_2:65007085-65007104 | None:intergenic | 50.0% | |
| GCAAGAAGGAAACACCGCTT+TGG | + | chr4_2:65007232-65007251 | Msa0615520:intron | 50.0% | |
| !! | GAAAGTGAAAGGGTACCCGG+AGG | - | chr4_2:65004583-65004602 | None:intergenic | 55.0% |
| GACTTGGAGGAATGGTGCAG+AGG | + | chr4_2:65005599-65005618 | Msa0615520:intron | 55.0% | |
| TTGGAGGAATGGTGCAGAGG+AGG | + | chr4_2:65005602-65005621 | Msa0615520:intron | 55.0% | |
| GCAAGGCATGTGGAGAGAAG+TGG | + | chr4_2:65006266-65006285 | Msa0615520:CDS | 55.0% | |
| AGTCGCAGAACTGTCTCCTC+TGG | + | chr4_2:65006746-65006765 | Msa0615520:intron | 55.0% | |
| GCAGAACTGTCTCCTCTGGT+TGG | + | chr4_2:65006750-65006769 | Msa0615520:intron | 55.0% | |
| CAGCCTGGAATTCCAACCAG+AGG | - | chr4_2:65006765-65006784 | None:intergenic | 55.0% | |
| CTCTGGTTGGAATTCCAGGC+TGG | + | chr4_2:65006763-65006782 | Msa0615520:intron | 55.0% | |
| CTTTCACGTGCCTTAGTCCC+AGG | - | chr4_2:65007062-65007081 | None:intergenic | 55.0% | |
| TCTTCTTCGGCCTCCACCTC+CGG | + | chr4_2:65004564-65004583 | Msa0615520:CDS | 60.0% | |
| !! | AGTGAAAGGGTACCCGGAGG+TGG | - | chr4_2:65004580-65004599 | None:intergenic | 60.0% |
| CTTCTTCGGCCTCCACCTCC+GGG | + | chr4_2:65004565-65004584 | Msa0615520:CDS | 65.0% | |
| !! | GAAAGGGTACCCGGAGGTGG+AGG | - | chr4_2:65004577-65004596 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 65004320 | 65007782 | 65004320 | ID=Msa0615520;Name=Msa0615520 |
| chr4_2 | mRNA | 65004320 | 65007782 | 65004320 | ID=Msa0615520-mRNA-1;Parent=Msa0615520;Name=Msa0615520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=202|1|1|1|1|1|6|273|151 |
| chr4_2 | exon | 65004320 | 65004586 | 65004320 | ID=Msa0615520-mRNA-1:exon:18321;Parent=Msa0615520-mRNA-1 |
| chr4_2 | exon | 65005135 | 65005290 | 65005135 | ID=Msa0615520-mRNA-1:exon:18322;Parent=Msa0615520-mRNA-1 |
| chr4_2 | exon | 65005935 | 65005992 | 65005935 | ID=Msa0615520-mRNA-1:exon:18323;Parent=Msa0615520-mRNA-1 |
| chr4_2 | exon | 65006262 | 65006306 | 65006262 | ID=Msa0615520-mRNA-1:exon:18324;Parent=Msa0615520-mRNA-1 |
| chr4_2 | exon | 65007290 | 65007370 | 65007290 | ID=Msa0615520-mRNA-1:exon:18325;Parent=Msa0615520-mRNA-1 |
| chr4_2 | exon | 65007459 | 65007782 | 65007459 | ID=Msa0615520-mRNA-1:exon:18326;Parent=Msa0615520-mRNA-1 |
| chr4_2 | five_prime_UTR | 65004320 | 65004521 | 65004320 | ID=Msa0615520-mRNA-1:five_prime_utr;Parent=Msa0615520-mRNA-1 |
| chr4_2 | CDS | 65004522 | 65004586 | 65004522 | ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1 |
| chr4_2 | CDS | 65005135 | 65005290 | 65005135 | ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1 |
| chr4_2 | CDS | 65005935 | 65005992 | 65005935 | ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1 |
| chr4_2 | CDS | 65006262 | 65006306 | 65006262 | ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1 |
| chr4_2 | CDS | 65007290 | 65007370 | 65007290 | ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1 |
| chr4_2 | CDS | 65007459 | 65007509 | 65007459 | ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1 |
| chr4_2 | three_prime_UTR | 65007510 | 65007782 | 65007510 | ID=Msa0615520-mRNA-1:three_prime_utr;Parent=Msa0615520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
