AlfalfaGEDB | Msa0615520

M. sativa cultivar zhongmu-4 / Msa0615520

KEGG: K11296
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00505.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0615520	XP_013457345.1	97.368	152	3	1	1	151	1	152	1.59e-100	295

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0615520	sp\|O64702\|HMG14_ARATH	55.921	152	65	2	1	151	1	151	5.03e-50	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0615520	TR	HMG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0615520	Msa0698570	0.956261	4.472588e-114	-8.615850e-47
Msa0615520	Msa0698590	0.817111	3.906381e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0615520	MtrunA17_Chr4g0052011	97.368	152	3	1	1	151	1	152	1.46e-104	295
Msa0615520	MtrunA17_Chr8g0370431	46.067	89	48	0	59	147	33	121	8.22e-24	90.5
Msa0615520	MtrunA17_Chr3g0143991	47.674	86	45	0	53	138	35	120	2.42e-23	89.4
Msa0615520	MtrunA17_Chr7g0242251	51.316	76	37	0	59	134	47	122	1.47e-22	87.8
Msa0615520	MtrunA17_Chr1g0212341	48.315	89	45	1	59	146	98	186	8.54e-22	87.0
Msa0615520	MtrunA17_Chr5g0407011	38.272	81	50	0	52	132	25	105	3.55e-15	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0615520	AT2G34450.4	55.921	152	65	2	1	151	1	151	5.11e-51	160
Msa0615520	AT2G34450.3	55.921	152	65	2	1	151	1	151	5.11e-51	160
Msa0615520	AT2G34450.1	55.921	152	65	2	1	151	1	151	5.11e-51	160
Msa0615520	AT2G34450.2	55.556	153	65	3	1	151	1	152	3.43e-49	155
Msa0615520	AT2G17560.3	43.478	115	61	1	41	151	13	127	8.71e-24	90.5
Msa0615520	AT2G17560.2	43.478	115	61	1	41	151	13	127	9.27e-24	90.5
Msa0615520	AT2G17560.1	43.478	115	61	1	41	151	13	127	9.27e-24	90.5
Msa0615520	AT3G51880.4	44.554	101	56	0	50	150	40	140	1.65e-23	90.5
Msa0615520	AT3G51880.5	44.118	102	57	0	50	151	40	141	2.13e-23	90.5
Msa0615520	AT3G51880.1	44.118	102	57	0	50	151	40	141	2.13e-23	90.5

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Find 34 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGTAGAAGAAAGCAGT+GGG	0.576065	4_2:-65005268	None:intergenic
AAGTAGAAGAAAGCAGTGGG+GGG	0.691336	4_2:-65005265	None:intergenic
ACAATTGAATATACAACTTA+AGG	0.404428	4_2:-65007576	None:intergenic
AGAAGTAGAAGAAAGCAGTG+GGG	0.730489	4_2:-65005267	None:intergenic
AGTGAAAGGGTACCCGGAGG+TGG	0.487598	4_2:-65004577	None:intergenic
ATACAGATTGGCAAGGCATG+TGG	0.602187	4_2:+65006256	Msa0615520:intron
ATCAAATTCTGCACGTTTCT+CGG	0.263566	4_2:-65007318	None:intergenic
ATGTTAATTGAAACTACTCG+AGG	0.664773	4_2:+65007552	Msa0615520:three_prime_UTR
CAAGAAAATGAATAAACTGA+AGG	0.601062	4_2:-65007512	None:intergenic
CAAGAAGTAGAAGAAAGCAG+TGG	0.644048	4_2:-65005269	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGTTGTTGTAGCAAAAAAT+AGG	+	chr4_2:65004440-65004459	Msa0615520:five_prime_UTR	30.0%
TAGACCTATAGGGATATTAA+TGG	+	chr4_2:65004821-65004840	Msa0615520:intron	30.0%
AAAAGTAGCACCATAATTAC+TGG	+	chr4_2:65005464-65005483	Msa0615520:intron	30.0%
GCTAATTGCTAATCAACAAA+TGG	-	chr4_2:65005631-65005650	None:intergenic	30.0%
AAAACATGTTTGAAGATGAG+TGG	-	chr4_2:65005685-65005704	None:intergenic	30.0%
ATAGTAGTATGATTGAGCAA+AGG	-	chr4_2:65005777-65005796	None:intergenic	30.0%
TTACAGTATATTTGGCATTG+TGG	+	chr4_2:65005797-65005816	Msa0615520:intron	30.0%
TGTAAAACAAAGTTGCTTCA+GGG	-	chr4_2:65006055-65006074	None:intergenic	30.0%
TTGTAAAACAAAGTTGCTTC+AGG	-	chr4_2:65006056-65006075	None:intergenic	30.0%
CAACCATAATAACACAATTC+AGG	-	chr4_2:65006347-65006366	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	65004320	65007782	65004320	ID=Msa0615520;Name=Msa0615520
chr4_2	mRNA	65004320	65007782	65004320	ID=Msa0615520-mRNA-1;Parent=Msa0615520;Name=Msa0615520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=202\|1\|1\|1\|1\|1\|6\|273\|151
chr4_2	exon	65004320	65004586	65004320	ID=Msa0615520-mRNA-1:exon:18321;Parent=Msa0615520-mRNA-1
chr4_2	exon	65005135	65005290	65005135	ID=Msa0615520-mRNA-1:exon:18322;Parent=Msa0615520-mRNA-1
chr4_2	exon	65005935	65005992	65005935	ID=Msa0615520-mRNA-1:exon:18323;Parent=Msa0615520-mRNA-1
chr4_2	exon	65006262	65006306	65006262	ID=Msa0615520-mRNA-1:exon:18324;Parent=Msa0615520-mRNA-1
chr4_2	exon	65007290	65007370	65007290	ID=Msa0615520-mRNA-1:exon:18325;Parent=Msa0615520-mRNA-1
chr4_2	exon	65007459	65007782	65007459	ID=Msa0615520-mRNA-1:exon:18326;Parent=Msa0615520-mRNA-1
chr4_2	five_prime_UTR	65004320	65004521	65004320	ID=Msa0615520-mRNA-1:five_prime_utr;Parent=Msa0615520-mRNA-1
chr4_2	CDS	65004522	65004586	65004522	ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1
chr4_2	CDS	65005135	65005290	65005135	ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1
chr4_2	CDS	65005935	65005992	65005935	ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1
chr4_2	CDS	65006262	65006306	65006262	ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1
chr4_2	CDS	65007290	65007370	65007290	ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1
chr4_2	CDS	65007459	65007509	65007459	ID=Msa0615520-mRNA-1:cds;Parent=Msa0615520-mRNA-1
chr4_2	three_prime_UTR	65007510	65007782	65007510	ID=Msa0615520-mRNA-1:three_prime_utr;Parent=Msa0615520-mRNA-1

Gene Sequence

>Msa0615520

ATGGCGAAAAAAGCTAAAGCCTCTCACTCTCAAAAGAACGCTTCTTCTTCGGCCTCCACCTCCGGGAAACTAGTGTTGGCGATCAAATCGAATGAGGGAATGAAGAGATCGTTGCGCCAGACTAAGTCAAGAGACTTAACCAAAGCAGTGCAAAAAAAGAACAAGCAAAAGATTGATGCTAAGAAGCCGAAGAAACCCCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGGAAAGAGTTTAAAGATCAGAATCCAGATGTTAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTTTGAGGAGAAAGTTCAATACTATGATATAGCAACCGAGAAACGTGCAGAATTTGATAGAGCAACGACAGAGTATAACAAGAAAATGGAAAGCGGCGAATATGAAGAAACTGATGAGGAGTCAGAGTATGACGAGTAA

Protein sequence

>Msa0615520

MAKKAKASHSQKNASSSASTSGKLVLAIKSNEGMKRSLRQTKSRDLTKAVQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIGKACGEKWKTMTFEEKVQYYDIATEKRAEFDRATTEYNKKMESGEYEETDEESEYDE*