Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698570 | XP_013457345.1 | 97.368 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 1.59e-100 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698570 | sp|O64702|HMG14_ARATH | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 5.03e-50 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698570 | I3SF63 | 97.368 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 7.60e-101 | 295 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0698570 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615520 | Msa0698570 | 0.956261 | 4.472588e-114 | -8.615850e-47 |
| Msa0698570 | Msa0698590 | 0.896446 | 3.659877e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698570 | MtrunA17_Chr4g0052011 | 97.368 | 152 | 3 | 1 | 1 | 151 | 1 | 152 | 1.46e-104 | 295 |
| Msa0698570 | MtrunA17_Chr8g0370431 | 46.067 | 89 | 48 | 0 | 59 | 147 | 33 | 121 | 8.22e-24 | 90.5 |
| Msa0698570 | MtrunA17_Chr3g0143991 | 47.674 | 86 | 45 | 0 | 53 | 138 | 35 | 120 | 2.42e-23 | 89.4 |
| Msa0698570 | MtrunA17_Chr7g0242251 | 51.316 | 76 | 37 | 0 | 59 | 134 | 47 | 122 | 1.47e-22 | 87.8 |
| Msa0698570 | MtrunA17_Chr1g0212341 | 48.315 | 89 | 45 | 1 | 59 | 146 | 98 | 186 | 8.54e-22 | 87.0 |
| Msa0698570 | MtrunA17_Chr5g0407011 | 38.272 | 81 | 50 | 0 | 52 | 132 | 25 | 105 | 3.55e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698570 | AT2G34450.4 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 5.11e-51 | 160 |
| Msa0698570 | AT2G34450.3 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 5.11e-51 | 160 |
| Msa0698570 | AT2G34450.1 | 55.921 | 152 | 65 | 2 | 1 | 151 | 1 | 151 | 5.11e-51 | 160 |
| Msa0698570 | AT2G34450.2 | 55.556 | 153 | 65 | 3 | 1 | 151 | 1 | 152 | 3.43e-49 | 155 |
| Msa0698570 | AT2G17560.3 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 8.71e-24 | 90.5 |
| Msa0698570 | AT2G17560.2 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 9.27e-24 | 90.5 |
| Msa0698570 | AT2G17560.1 | 43.478 | 115 | 61 | 1 | 41 | 151 | 13 | 127 | 9.27e-24 | 90.5 |
| Msa0698570 | AT3G51880.4 | 44.554 | 101 | 56 | 0 | 50 | 150 | 40 | 140 | 1.65e-23 | 90.5 |
| Msa0698570 | AT3G51880.5 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.13e-23 | 90.5 |
| Msa0698570 | AT3G51880.1 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.13e-23 | 90.5 |
| Msa0698570 | AT3G51880.3 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.13e-23 | 90.5 |
| Msa0698570 | AT3G51880.2 | 44.118 | 102 | 57 | 0 | 50 | 151 | 40 | 141 | 2.33e-23 | 90.9 |
| Msa0698570 | AT1G20693.3 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 5.19e-22 | 86.3 |
| Msa0698570 | AT1G20693.1 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 5.32e-22 | 86.3 |
| Msa0698570 | AT4G35570.1 | 44.318 | 88 | 49 | 0 | 59 | 146 | 30 | 117 | 5.77e-22 | 85.5 |
| Msa0698570 | AT4G35570.2 | 44.318 | 88 | 49 | 0 | 59 | 146 | 30 | 117 | 5.77e-22 | 85.5 |
| Msa0698570 | AT1G20693.2 | 46.667 | 90 | 46 | 1 | 59 | 148 | 34 | 121 | 1.22e-21 | 85.1 |
| Msa0698570 | AT1G20696.1 | 45.556 | 90 | 47 | 1 | 59 | 148 | 31 | 118 | 8.03e-21 | 82.8 |
| Msa0698570 | AT1G20696.2 | 44.156 | 77 | 43 | 0 | 59 | 135 | 31 | 107 | 5.12e-18 | 75.9 |
| Msa0698570 | AT1G20696.5 | 44.156 | 77 | 43 | 0 | 59 | 135 | 31 | 107 | 5.38e-18 | 75.5 |
| Msa0698570 | AT5G23420.1 | 47.059 | 68 | 35 | 1 | 60 | 127 | 112 | 178 | 6.51e-13 | 64.3 |
| Msa0698570 | AT1G20696.4 | 43.243 | 74 | 40 | 1 | 75 | 148 | 5 | 76 | 4.74e-12 | 59.3 |
| Msa0698570 | AT1G20696.3 | 43.243 | 74 | 40 | 1 | 75 | 148 | 5 | 76 | 1.29e-11 | 58.2 |
Find 35 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCTTAAAATTGCAGTTT+TGG | 0.234894 | 4_4:+68937308 | Msa0698570:three_prime_UTR |
| CTGATTCCAAGTTTGGTAAA+AGG | 0.256016 | 4_4:-68937365 | None:intergenic |
| ATCAAATTCTGCACGTTTCT+CGG | 0.263566 | 4_4:-68936950 | None:intergenic |
| GAAGACCCTGATTCCAAGTT+TGG | 0.294181 | 4_4:-68937372 | None:intergenic |
| TCTTCTTCGGCCTCCACCTC+CGG | 0.314496 | 4_4:+68934189 | Msa0698570:CDS |
| GACAGAGTATAACAAGAAAA+TGG | 0.358050 | 4_4:+68936981 | Msa0698570:CDS |
| TTCACAGACAGTGTGGTTGC+AGG | 0.361442 | 4_4:+68934103 | None:intergenic |
| TTAAGTCTCTTGACTTAGTC+TGG | 0.383960 | 4_4:-68934811 | None:intergenic |
| ACAATTGAATATACAACTTA+AGG | 0.404428 | 4_4:-68937208 | None:intergenic |
| TATTAAGGAAACTGAATAGA+AGG | 0.404653 | 4_4:+68937338 | Msa0698570:three_prime_UTR |
| TCAAAAGAACGCTTCTTCTT+CGG | 0.408803 | 4_4:+68934176 | Msa0698570:CDS |
| TCACGCATTGACTTAACATC+TGG | 0.420177 | 4_4:-68935593 | None:intergenic |
| TATTCAATTGTAGTCAGCTC+TGG | 0.466116 | 4_4:+68937220 | Msa0698570:three_prime_UTR |
| CTTCTTCGGCCTCCACCTCC+GGG | 0.468963 | 4_4:+68934190 | Msa0698570:CDS |
| AGTGAAAGGGTACCCGGAGG+TGG | 0.487598 | 4_4:-68934202 | None:intergenic |
| TTTAAGCATCTAACTAACAT+AGG | 0.495752 | 4_4:-68937295 | None:intergenic |
| CGAGTAGTTTCAATTAACAT+AGG | 0.500098 | 4_4:-68937181 | None:intergenic |
| GAAAGGGTACCCGGAGGTGG+AGG | 0.521126 | 4_4:-68934199 | None:intergenic |
| TCACAGACAGTGTGGTTGCA+GGG | 0.527449 | 4_4:+68934104 | None:intergenic |
| GCAAGGCATGTGGAGAGAAG+TGG | 0.571530 | 4_4:+68935899 | Msa0698570:CDS |
| CGTGTTCATACAGATTGGCA+AGG | 0.572075 | 4_4:+68935882 | Msa0698570:intron |
| AAGAAGTAGAAGAAAGCAGT+GGG | 0.576065 | 4_4:-68934893 | None:intergenic |
| GTTGGCGATCAAATCGAATG+AGG | 0.587280 | 4_4:+68934769 | Msa0698570:CDS |
| GAAGTAGAAGAAAGCAGTGG+GGG | 0.593069 | 4_4:-68934891 | None:intergenic |
| TCTGATGCTTTGCAGGAAAG+CGG | 0.595152 | 4_4:+68937076 | Msa0698570:intron |
| CAAGAAAATGAATAAACTGA+AGG | 0.601062 | 4_4:-68937144 | None:intergenic |
| ATACAGATTGGCAAGGCATG+TGG | 0.602187 | 4_4:+68935889 | Msa0698570:intron |
| CGAATATGAAGAAACTGATG+AGG | 0.603289 | 4_4:+68937099 | Msa0698570:CDS |
| TGATAGTTGAGAAGCACCAA+TGG | 0.611816 | 4_4:+68934128 | Msa0698570:exon |
| TTGGCGATCAAATCGAATGA+GGG | 0.633911 | 4_4:+68934770 | Msa0698570:CDS |
| CAAGAAGTAGAAGAAAGCAG+TGG | 0.644048 | 4_4:-68934894 | None:intergenic |
| TTCGCATTTCACAGACAGTG+TGG | 0.663483 | 4_4:+68934096 | None:intergenic |
| ATGTTAATTGAAACTACTCG+AGG | 0.664773 | 4_4:+68937184 | Msa0698570:three_prime_UTR |
| AAGTAGAAGAAAGCAGTGGG+GGG | 0.691336 | 4_4:-68934890 | None:intergenic |
| AGAAGTAGAAGAAAGCAGTG+GGG | 0.730489 | 4_4:-68934892 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAAGTTTCAAAAAT+TGG | + | chr4_4:68936031-68936050 | Msa0698570:intron | 10.0% |
| !! | ATAAATTATGTTTCAAAAAT+TGG | + | chr4_4:68936106-68936125 | Msa0698570:intron | 10.0% |
| !! | TTGTTATATTTGAAAAAAAT+TGG | + | chr4_4:68936263-68936282 | Msa0698570:intron | 10.0% |
| !! | ATAAAAAAATTAAAGTAAAG+GGG | + | chr4_4:68936625-68936644 | Msa0698570:intron | 10.0% |
| !! | TCATTCAAGTAAAAAATTAT+TGG | + | chr4_4:68934506-68934525 | Msa0698570:intron | 15.0% |
| !!! | CGATTTTTATGTTTAATTAT+TGG | + | chr4_4:68936468-68936487 | Msa0698570:intron | 15.0% |
| !! | AAAAATGATAATTATTCACA+AGG | - | chr4_4:68937250-68937269 | None:intergenic | 15.0% |
| !! | AATAAGCAGAAAACAATTTA+TGG | - | chr4_4:68934322-68934341 | None:intergenic | 20.0% |
| !!! | AATTGATTTTTAGACCTATA+TGG | + | chr4_4:68934436-68934455 | Msa0698570:intron | 20.0% |
| !! | TTGTAAAAATTAGAAGATTC+AGG | + | chr4_4:68934479-68934498 | Msa0698570:intron | 20.0% |
| !! | TGTAAAAATTAGAAGATTCA+GGG | + | chr4_4:68934480-68934499 | Msa0698570:intron | 20.0% |
| !!! | CCATCATTTTATTCAATTTT+GGG | - | chr4_4:68934599-68934618 | None:intergenic | 20.0% |
| !! | AAAATTGAATAAAATGATGG+CGG | + | chr4_4:68934599-68934618 | Msa0698570:intron | 20.0% |
| !! | AACATCATAAATAAAGAACA+AGG | - | chr4_4:68934939-68934958 | None:intergenic | 20.0% |
| !!! | AATTTAGAACAAATGGAAAA+TGG | - | chr4_4:68935001-68935020 | None:intergenic | 20.0% |
| !!! | CCATAAAAATTTAGAACAAA+TGG | - | chr4_4:68935008-68935027 | None:intergenic | 20.0% |
| !!! | CCATTTGTTCTAAATTTTTA+TGG | + | chr4_4:68935005-68935024 | Msa0698570:intron | 20.0% |
| !! | ACTACTATTTACAGTATATT+TGG | + | chr4_4:68935413-68935432 | Msa0698570:intron | 20.0% |
| !!! | ACAATTGCTTCTTTTTTATA+TGG | + | chr4_4:68935477-68935496 | Msa0698570:intron | 20.0% |
| !!! | ATAACTGGCAATTTTTAAAA+TGG | - | chr4_4:68935754-68935773 | None:intergenic | 20.0% |
| !! | TCTCAAAAACATAAAATAAC+TGG | - | chr4_4:68935769-68935788 | None:intergenic | 20.0% |
| !! | TTTGAAAAAAATTGGAAAGT+TGG | + | chr4_4:68936271-68936290 | Msa0698570:intron | 20.0% |
| !! | TTATGTTTAATTATTGGTGT+TGG | + | chr4_4:68936474-68936493 | Msa0698570:intron | 20.0% |
| !!! | AAACTAGTTCTATATTGATT+TGG | - | chr4_4:68936771-68936790 | None:intergenic | 20.0% |
| !! | AGATCAAATTGAACATAATA+TGG | - | chr4_4:68936842-68936861 | None:intergenic | 20.0% |
| !!! | TATTCATTTTCTTGTTTACA+AGG | + | chr4_4:68937153-68937172 | Msa0698570:three_prime_UTR | 20.0% |
| !! | ACAATTGAATATACAACTTA+AGG | - | chr4_4:68937211-68937230 | None:intergenic | 20.0% |
| ! | CTAACTTTCTTCTATAGTTA+CGG | + | chr4_4:68934272-68934291 | Msa0698570:intron | 25.0% |
| !!! | TTTAATTTTCAGAAGCTCTT+CGG | + | chr4_4:68934409-68934428 | Msa0698570:intron | 25.0% |
| ! | TAGACCTATATGGATATTAA+TGG | + | chr4_4:68934446-68934465 | Msa0698570:intron | 25.0% |
| !!! | TTATTCAATTTTGGGTCTAA+GGG | - | chr4_4:68934591-68934610 | None:intergenic | 25.0% |
| !!! | TTTATTCAATTTTGGGTCTA+AGG | - | chr4_4:68934592-68934611 | None:intergenic | 25.0% |
| ! | CCCAAAATTGAATAAAATGA+TGG | + | chr4_4:68934596-68934615 | Msa0698570:intron | 25.0% |
| !! | GCCATCATTTTATTCAATTT+TGG | - | chr4_4:68934600-68934619 | None:intergenic | 25.0% |
| ! | ATCATAAATAAAGAACAAGG+AGG | - | chr4_4:68934936-68934955 | None:intergenic | 25.0% |
| ! | TAGTAATGAACCAGTAATTA+TGG | - | chr4_4:68935102-68935121 | None:intergenic | 25.0% |
| ! | AATAAGACATAGTAGAAACA+AGG | - | chr4_4:68935376-68935395 | None:intergenic | 25.0% |
| ! | TTCAAAATTACTGTGTTTAC+TGG | + | chr4_4:68935515-68935534 | Msa0698570:intron | 25.0% |
| !!! | AAGTTCTTTTTCATTCTGAA+GGG | + | chr4_4:68935538-68935557 | Msa0698570:intron | 25.0% |
| ! | TAGACGAAATATTAATACGA+CGG | - | chr4_4:68935633-68935652 | None:intergenic | 25.0% |
| !! | AATTCAGGTTAAATATGCAA+GGG | - | chr4_4:68935965-68935984 | None:intergenic | 25.0% |
| !! | TAACCTGAATTGTGTTATTA+TGG | + | chr4_4:68935974-68935993 | Msa0698570:intron | 25.0% |
| !! | GAATTTTGTCAAAACTGTTT+AGG | + | chr4_4:68936135-68936154 | Msa0698570:intron | 25.0% |
| !!! | AACTGTTTAGGTTTTTAATG+TGG | + | chr4_4:68936147-68936166 | Msa0698570:intron | 25.0% |
| !!! | ATCAGTTTTTTGACTCATTT+AGG | + | chr4_4:68936426-68936445 | Msa0698570:intron | 25.0% |
| !!! | TCAGTTTTTTGACTCATTTA+GGG | + | chr4_4:68936427-68936446 | Msa0698570:intron | 25.0% |
| ! | ATTATAAAGACACGTAAACT+GGG | - | chr4_4:68936590-68936609 | None:intergenic | 25.0% |
| ! | TAACAAAAATTGTATCTGAC+AGG | + | chr4_4:68936900-68936919 | Msa0698570:intron | 25.0% |
| ! | CAAGAAAATGAATAAACTGA+AGG | - | chr4_4:68937147-68937166 | None:intergenic | 25.0% |
| ! | TTTAAGCATCTAACTAACAT+AGG | - | chr4_4:68937298-68937317 | None:intergenic | 25.0% |
| !! | ATGCTTAAAATTGCAGTTTT+GGG | + | chr4_4:68937309-68937328 | Msa0698570:three_prime_UTR | 25.0% |
| !!! | AGTTTTGGGCATATATATTA+AGG | + | chr4_4:68937323-68937342 | Msa0698570:three_prime_UTR | 25.0% |
| ! | TATTAAGGAAACTGAATAGA+AGG | + | chr4_4:68937338-68937357 | Msa0698570:three_prime_UTR | 25.0% |
| ! | TTAATTTTCAGAAGCTCTTC+GGG | + | chr4_4:68934410-68934429 | Msa0698570:intron | 30.0% |
| CACTCCATTAATATCCATAT+AGG | - | chr4_4:68934453-68934472 | None:intergenic | 30.0% | |
| AAAAGTAGCACCATAATTAC+TGG | + | chr4_4:68935089-68935108 | Msa0698570:intron | 30.0% | |
| !!! | GTATTTTACGGATTTTGACT+TGG | + | chr4_4:68935207-68935226 | Msa0698570:intron | 30.0% |
| GCTAATTGCTAATCAACAAA+TGG | - | chr4_4:68935255-68935274 | None:intergenic | 30.0% | |
| AAAACATGTTTGAAGATGAG+TGG | - | chr4_4:68935309-68935328 | None:intergenic | 30.0% | |
| ATAGTAGTATGATTGAGCAA+AGG | - | chr4_4:68935401-68935420 | None:intergenic | 30.0% | |
| TTACAGTATATTTGGCATTG+TGG | + | chr4_4:68935421-68935440 | Msa0698570:intron | 30.0% | |
| !! | GAAGTTCTTTTTCATTCTGA+AGG | + | chr4_4:68935537-68935556 | Msa0698570:intron | 30.0% |
| TGTAAAACAAAGTTGCTTCA+GGG | - | chr4_4:68935679-68935698 | None:intergenic | 30.0% | |
| TTGTAAAACAAAGTTGCTTC+AGG | - | chr4_4:68935680-68935699 | None:intergenic | 30.0% | |
| ! | CAATTCAGGTTAAATATGCA+AGG | - | chr4_4:68935966-68935985 | None:intergenic | 30.0% |
| CAACCATAATAACACAATTC+AGG | - | chr4_4:68935980-68935999 | None:intergenic | 30.0% | |
| TTGTCAGTTGTGATATTTGA+CGG | + | chr4_4:68936065-68936084 | Msa0698570:intron | 30.0% | |
| ! | TATGTTTCAAAAATTGGCTC+AGG | + | chr4_4:68936112-68936131 | Msa0698570:intron | 30.0% |
| ! | ATGTTTCAAAAATTGGCTCA+GGG | + | chr4_4:68936113-68936132 | Msa0698570:intron | 30.0% |
| ATTAACACGAGTACATTTGT+AGG | + | chr4_4:68936501-68936520 | Msa0698570:intron | 30.0% | |
| GATTATAAAGACACGTAAAC+TGG | - | chr4_4:68936591-68936610 | None:intergenic | 30.0% | |
| !! | TGGATGGTATTTTAGAAAAC+TGG | - | chr4_4:68936658-68936677 | None:intergenic | 30.0% |
| !! | TTCTAAAATACCATCCATTG+TGG | + | chr4_4:68936661-68936680 | Msa0698570:intron | 30.0% |
| ! | ATTTGGAATAAATAGCAGCA+CGG | - | chr4_4:68936754-68936773 | None:intergenic | 30.0% |
| GACAGAGTATAACAAGAAAA+TGG | + | chr4_4:68936981-68937000 | Msa0698570:CDS | 30.0% | |
| TAACCTATCTGTCATATTCA+TGG | + | chr4_4:68937004-68937023 | Msa0698570:intron | 30.0% | |
| CGAGTAGTTTCAATTAACAT+AGG | - | chr4_4:68937184-68937203 | None:intergenic | 30.0% | |
| ATGTTAATTGAAACTACTCG+AGG | + | chr4_4:68937184-68937203 | Msa0698570:three_prime_UTR | 30.0% | |
| ! | GATGCTTAAAATTGCAGTTT+TGG | + | chr4_4:68937308-68937327 | Msa0698570:three_prime_UTR | 30.0% |
| ! | TTTTACCAAACTTGGAATCA+GGG | + | chr4_4:68937367-68937386 | Msa0698570:three_prime_UTR | 30.0% |
| TCAAAAGAACGCTTCTTCTT+CGG | + | chr4_4:68934176-68934195 | Msa0698570:CDS | 35.0% | |
| TTTCTTCTATAGTTACGGTC+TGG | + | chr4_4:68934277-68934296 | Msa0698570:intron | 35.0% | |
| !! | CTTATTTTCACAAGCTCTTC+AGG | + | chr4_4:68934336-68934355 | Msa0698570:intron | 35.0% |
| TTATGACCAATGCGCAATTT+AGG | - | chr4_4:68934536-68934555 | None:intergenic | 35.0% | |
| ! | GCGCATTGGTCATAATAAAA+AGG | + | chr4_4:68934541-68934560 | Msa0698570:intron | 35.0% |
| ! | AATGCTGCATTGAGTTTTTC+AGG | + | chr4_4:68934738-68934757 | Msa0698570:intron | 35.0% |
| !!! | GTTTTTCAGGAAACTAGTGT+TGG | + | chr4_4:68934751-68934770 | Msa0698570:intron | 35.0% |
| TTAAGTCTCTTGACTTAGTC+TGG | - | chr4_4:68934814-68934833 | None:intergenic | 35.0% | |
| !!! | GTTCTTTTTTTGCACTGCTT+TGG | - | chr4_4:68934837-68934856 | None:intergenic | 35.0% |
| AAGAAGTAGAAGAAAGCAGT+GGG | - | chr4_4:68934896-68934915 | None:intergenic | 35.0% | |
| ACAAGAGTTTAGCTGCATTA+AGG | + | chr4_4:68935045-68935064 | Msa0698570:intron | 35.0% | |
| ACTGATATGTGTGTTTCCTT+TGG | + | chr4_4:68935149-68935168 | Msa0698570:intron | 35.0% | |
| ! | TATACTATCGCGTAAGTTGA+TGG | + | chr4_4:68935175-68935194 | Msa0698570:intron | 35.0% |
| !! | ATACTATCGCGTAAGTTGAT+GGG | + | chr4_4:68935176-68935195 | Msa0698570:intron | 35.0% |
| ! | TGGGGTTCTGTTGTATTTTA+CGG | + | chr4_4:68935195-68935214 | Msa0698570:intron | 35.0% |
| !!! | TTTTACGGATTTTGACTTGG+AGG | + | chr4_4:68935210-68935229 | Msa0698570:intron | 35.0% |
| GACATAGTAGAAACAAGGAA+AGG | - | chr4_4:68935371-68935390 | None:intergenic | 35.0% | |
| !! | TTCTTTTTCATTCTGAAGGG+AGG | + | chr4_4:68935541-68935560 | Msa0698570:intron | 35.0% |
| GTAAAACAAAGTTGCTTCAG+GGG | - | chr4_4:68935678-68935697 | None:intergenic | 35.0% | |
| ! | GATGATGATGATGATGATGA+TGG | - | chr4_4:68935804-68935823 | None:intergenic | 35.0% |
| ! | GTGGAAAACAATGACTTTTG+AGG | + | chr4_4:68935918-68935937 | Msa0698570:CDS | 35.0% |
| AAGAAGTCATGATCAAGACA+TGG | - | chr4_4:68936194-68936213 | None:intergenic | 35.0% | |
| TGGAAAGTTGGAATTCATTG+CGG | + | chr4_4:68936283-68936302 | Msa0698570:intron | 35.0% | |
| CCATTGTCAGGAATTTAAAC+AGG | - | chr4_4:68936807-68936826 | None:intergenic | 35.0% | |
| CCTGTTTAAATTCCTGACAA+TGG | + | chr4_4:68936804-68936823 | Msa0698570:intron | 35.0% | |
| TCAATTTGATCTGAGCAAGA+AGG | + | chr4_4:68936850-68936869 | Msa0698570:intron | 35.0% | |
| ATCAAATTCTGCACGTTTCT+CGG | - | chr4_4:68936953-68936972 | None:intergenic | 35.0% | |
| TAGCCATGAATATGACAGAT+AGG | - | chr4_4:68937010-68937029 | None:intergenic | 35.0% | |
| ! | CTAGTGAACTGACTCTTATT+TGG | + | chr4_4:68937027-68937046 | Msa0698570:intron | 35.0% |
| !! | TTTGTTTTCTGATGCTTTGC+AGG | + | chr4_4:68937069-68937088 | Msa0698570:intron | 35.0% |
| CGAATATGAAGAAACTGATG+AGG | + | chr4_4:68937099-68937118 | Msa0698570:CDS | 35.0% | |
| TATTCAATTGTAGTCAGCTC+TGG | + | chr4_4:68937220-68937239 | Msa0698570:three_prime_UTR | 35.0% | |
| ! | GGTATTCCTTTTACCAAACT+TGG | + | chr4_4:68937359-68937378 | Msa0698570:three_prime_UTR | 35.0% |
| CTGATTCCAAGTTTGGTAAA+AGG | - | chr4_4:68937368-68937387 | None:intergenic | 35.0% | |
| ! | CTTTTACCAAACTTGGAATC+AGG | + | chr4_4:68937366-68937385 | Msa0698570:three_prime_UTR | 35.0% |
| !! | TGATAGTTGAGAAGCACCAA+TGG | + | chr4_4:68934128-68934147 | Msa0698570:exon | 40.0% |
| !!! | GCTTTAGCTTTTTTCGCCAT+TGG | - | chr4_4:68934147-68934166 | None:intergenic | 40.0% |
| GGAGAGTAGAGAAAGTGAAA+GGG | - | chr4_4:68934218-68934237 | None:intergenic | 40.0% | |
| AGGAGAGTAGAGAAAGTGAA+AGG | - | chr4_4:68934219-68934238 | None:intergenic | 40.0% | |
| ! | TACTCTCCTTTTCGTTCACA+AGG | + | chr4_4:68934230-68934249 | Msa0698570:intron | 40.0% |
| ! | ACTCTCCTTTTCGTTCACAA+GGG | + | chr4_4:68934231-68934250 | Msa0698570:intron | 40.0% |
| CCAAGGCATAATTGCATTGT+TGG | - | chr4_4:68934568-68934587 | None:intergenic | 40.0% | |
| CCAACAATGCAATTATGCCT+TGG | + | chr4_4:68934565-68934584 | Msa0698570:intron | 40.0% | |
| TAGCTTCAGGTGTTAGTAGT+GGG | + | chr4_4:68934658-68934677 | Msa0698570:intron | 40.0% | |
| TTGGCGATCAAATCGAATGA+GGG | + | chr4_4:68934770-68934789 | Msa0698570:CDS | 40.0% | |
| AGAAGTAGAAGAAAGCAGTG+GGG | - | chr4_4:68934895-68934914 | None:intergenic | 40.0% | |
| CAAGAAGTAGAAGAAAGCAG+TGG | - | chr4_4:68934897-68934916 | None:intergenic | 40.0% | |
| ACGCGATAGTATAACTCCAA+AGG | - | chr4_4:68935168-68935187 | None:intergenic | 40.0% | |
| !! | TACTATCGCGTAAGTTGATG+GGG | + | chr4_4:68935177-68935196 | Msa0698570:intron | 40.0% |
| !! | CATTCTGAAGGGAGGATTTT+CGG | + | chr4_4:68935549-68935568 | Msa0698570:intron | 40.0% |
| !! | TCACGCATTGACTTAACATC+TGG | - | chr4_4:68935596-68935615 | None:intergenic | 40.0% |
| CAATCTGTATGAACACGGAA+AGG | - | chr4_4:68935879-68935898 | None:intergenic | 40.0% | |
| CTTTCCGTGTTCATACAGAT+TGG | + | chr4_4:68935877-68935896 | Msa0698570:intron | 40.0% | |
| CTTGCCAATCTGTATGAACA+CGG | - | chr4_4:68935884-68935903 | None:intergenic | 40.0% | |
| AGCAGAACTGAAGATCACTT+TGG | + | chr4_4:68936308-68936327 | Msa0698570:intron | 40.0% | |
| AGGTAAGTTTCCACAATGGA+TGG | - | chr4_4:68936674-68936693 | None:intergenic | 40.0% | |
| ATCCATTGTGGAAACTTACC+TGG | + | chr4_4:68936673-68936692 | Msa0698570:intron | 40.0% | |
| TCCATTGTGGAAACTTACCT+GGG | + | chr4_4:68936674-68936693 | Msa0698570:intron | 40.0% | |
| ATACTTGACACTCCATTGTC+AGG | - | chr4_4:68936819-68936838 | None:intergenic | 40.0% | |
| AACATAGAGCTCAACCAAAG+CGG | - | chr4_4:68936881-68936900 | None:intergenic | 40.0% | |
| !! | AGCGTTCTTTTGAGAGTGAG+AGG | - | chr4_4:68934169-68934188 | None:intergenic | 45.0% |
| !! | AGAGAAAGTGAAAGGGTACC+CGG | - | chr4_4:68934211-68934230 | None:intergenic | 45.0% |
| CCTTTCCCTTGTGAACGAAA+AGG | - | chr4_4:68934239-68934258 | None:intergenic | 45.0% | |
| ! | CCTTTTCGTTCACAAGGGAA+AGG | + | chr4_4:68934236-68934255 | Msa0698570:intron | 45.0% |
| GGAAGACCTAAATTGCGCAT+TGG | + | chr4_4:68934527-68934546 | Msa0698570:intron | 45.0% | |
| !! | AATTTTGGGTCTAAGGGCCA+AGG | - | chr4_4:68934585-68934604 | None:intergenic | 45.0% |
| TGTGAGTTTCAACCGTGTCT+AGG | + | chr4_4:68934625-68934644 | Msa0698570:intron | 45.0% | |
| ! | TAGAGGTGTAGACCTAGACA+CGG | - | chr4_4:68934640-68934659 | None:intergenic | 45.0% |
| CTACTAACACCTGAAGCTAG+AGG | - | chr4_4:68934657-68934676 | None:intergenic | 45.0% | |
| CTAGCTTCAGGTGTTAGTAG+TGG | + | chr4_4:68934657-68934676 | Msa0698570:intron | 45.0% | |
| AGCTTCAGGTGTTAGTAGTG+GGG | + | chr4_4:68934659-68934678 | Msa0698570:intron | 45.0% | |
| GTTGGCGATCAAATCGAATG+AGG | + | chr4_4:68934769-68934788 | Msa0698570:CDS | 45.0% | |
| AAGTAGAAGAAAGCAGTGGG+GGG | - | chr4_4:68934893-68934912 | None:intergenic | 45.0% | |
| GAAGTAGAAGAAAGCAGTGG+GGG | - | chr4_4:68934894-68934913 | None:intergenic | 45.0% | |
| !!! | CGGATTTTGACTTGGAGGAA+TGG | + | chr4_4:68935215-68935234 | Msa0698570:intron | 45.0% |
| TCTCAGCTCTTGAACTTGAG+GGG | - | chr4_4:68935283-68935302 | None:intergenic | 45.0% | |
| GTCTCAGCTCTTGAACTTGA+GGG | - | chr4_4:68935284-68935303 | None:intergenic | 45.0% | |
| TGTCTCAGCTCTTGAACTTG+AGG | - | chr4_4:68935285-68935304 | None:intergenic | 45.0% | |
| TCTGTATGAACACGGAAAGG+AGG | - | chr4_4:68935876-68935895 | None:intergenic | 45.0% | |
| CGTGTTCATACAGATTGGCA+AGG | + | chr4_4:68935882-68935901 | Msa0698570:intron | 45.0% | |
| ATACAGATTGGCAAGGCATG+TGG | + | chr4_4:68935889-68935908 | Msa0698570:intron | 45.0% | |
| TCCCAGGTAAGTTTCCACAA+TGG | - | chr4_4:68936678-68936697 | None:intergenic | 45.0% | |
| TGGAAACTTACCTGGGACTA+AGG | + | chr4_4:68936681-68936700 | Msa0698570:intron | 45.0% | |
| TCTGATGCTTTGCAGGAAAG+CGG | + | chr4_4:68937076-68937095 | Msa0698570:intron | 45.0% | |
| GAAGACCCTGATTCCAAGTT+TGG | - | chr4_4:68937375-68937394 | None:intergenic | 45.0% | |
| !! | AAATAAAAAAATTAAAGTAA+AGG | + | chr4_4:68936623-68936642 | Msa0698570:intron | 5.0% |
| !! | AATAAAAAAATTAAAGTAAA+GGG | + | chr4_4:68936624-68936643 | Msa0698570:intron | 5.0% |
| ! | AGGTCTACACCTCTAGCTTC+AGG | + | chr4_4:68934645-68934664 | Msa0698570:intron | 50.0% |
| GCTTCAGGTGTTAGTAGTGG+GGG | + | chr4_4:68934660-68934679 | Msa0698570:intron | 50.0% | |
| AAAGCAGTGGGGGGTTTCTT+CGG | - | chr4_4:68934884-68934903 | None:intergenic | 50.0% | |
| CTCAGCTCTTGAACTTGAGG+GGG | - | chr4_4:68935282-68935301 | None:intergenic | 50.0% | |
| TCTCCTCTGGTTGGAATTCC+AGG | + | chr4_4:68936392-68936411 | Msa0698570:intron | 50.0% | |
| AACTGATGATCATGCCAGCC+TGG | - | chr4_4:68936413-68936432 | None:intergenic | 50.0% | |
| CACGTAAACTGGGTGCTCTA+AGG | - | chr4_4:68936580-68936599 | None:intergenic | 50.0% | |
| AGCTTCTTCTCGATAGCAGC+AGG | - | chr4_4:68936717-68936736 | None:intergenic | 50.0% | |
| GCAAGAAGGAAACACCGCTT+TGG | + | chr4_4:68936864-68936883 | Msa0698570:intron | 50.0% | |
| !! | GAAAGTGAAAGGGTACCCGG+AGG | - | chr4_4:68934208-68934227 | None:intergenic | 55.0% |
| GACTTGGAGGAATGGTGCAG+AGG | + | chr4_4:68935223-68935242 | Msa0698570:intron | 55.0% | |
| TTGGAGGAATGGTGCAGAGG+AGG | + | chr4_4:68935226-68935245 | Msa0698570:intron | 55.0% | |
| GCAAGGCATGTGGAGAGAAG+TGG | + | chr4_4:68935899-68935918 | Msa0698570:CDS | 55.0% | |
| AGTCGCAGAACTGTCTCCTC+TGG | + | chr4_4:68936379-68936398 | Msa0698570:intron | 55.0% | |
| GCAGAACTGTCTCCTCTGGT+TGG | + | chr4_4:68936383-68936402 | Msa0698570:intron | 55.0% | |
| CAGCCTGGAATTCCAACCAG+AGG | - | chr4_4:68936398-68936417 | None:intergenic | 55.0% | |
| CTCTGGTTGGAATTCCAGGC+TGG | + | chr4_4:68936396-68936415 | Msa0698570:intron | 55.0% | |
| CTTTCACGTGCCTTAGTCCC+AGG | - | chr4_4:68936694-68936713 | None:intergenic | 55.0% | |
| TCTTCTTCGGCCTCCACCTC+CGG | + | chr4_4:68934189-68934208 | Msa0698570:CDS | 60.0% | |
| !! | AGTGAAAGGGTACCCGGAGG+TGG | - | chr4_4:68934205-68934224 | None:intergenic | 60.0% |
| CTTCTTCGGCCTCCACCTCC+GGG | + | chr4_4:68934190-68934209 | Msa0698570:CDS | 65.0% | |
| !! | GAAAGGGTACCCGGAGGTGG+AGG | - | chr4_4:68934202-68934221 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 68934107 | 68937414 | 68934107 | ID=Msa0698570;Name=Msa0698570 |
| chr4_4 | mRNA | 68934107 | 68937414 | 68934107 | ID=Msa0698570-mRNA-1;Parent=Msa0698570;Name=Msa0698570-mRNA-1;_AED=0.33;_eAED=0.33;_QI=40|1|1|1|1|1|6|273|151 |
| chr4_4 | exon | 68934107 | 68934211 | 68934107 | ID=Msa0698570-mRNA-1:exon:20555;Parent=Msa0698570-mRNA-1 |
| chr4_4 | exon | 68934760 | 68934915 | 68934760 | ID=Msa0698570-mRNA-1:exon:20556;Parent=Msa0698570-mRNA-1 |
| chr4_4 | exon | 68935559 | 68935616 | 68935559 | ID=Msa0698570-mRNA-1:exon:20557;Parent=Msa0698570-mRNA-1 |
| chr4_4 | exon | 68935895 | 68935939 | 68935895 | ID=Msa0698570-mRNA-1:exon:20558;Parent=Msa0698570-mRNA-1 |
| chr4_4 | exon | 68936922 | 68937002 | 68936922 | ID=Msa0698570-mRNA-1:exon:20559;Parent=Msa0698570-mRNA-1 |
| chr4_4 | exon | 68937091 | 68937414 | 68937091 | ID=Msa0698570-mRNA-1:exon:20560;Parent=Msa0698570-mRNA-1 |
| chr4_4 | five_prime_UTR | 68934107 | 68934146 | 68934107 | ID=Msa0698570-mRNA-1:five_prime_utr;Parent=Msa0698570-mRNA-1 |
| chr4_4 | CDS | 68934147 | 68934211 | 68934147 | ID=Msa0698570-mRNA-1:cds;Parent=Msa0698570-mRNA-1 |
| chr4_4 | CDS | 68934760 | 68934915 | 68934760 | ID=Msa0698570-mRNA-1:cds;Parent=Msa0698570-mRNA-1 |
| chr4_4 | CDS | 68935559 | 68935616 | 68935559 | ID=Msa0698570-mRNA-1:cds;Parent=Msa0698570-mRNA-1 |
| chr4_4 | CDS | 68935895 | 68935939 | 68935895 | ID=Msa0698570-mRNA-1:cds;Parent=Msa0698570-mRNA-1 |
| chr4_4 | CDS | 68936922 | 68937002 | 68936922 | ID=Msa0698570-mRNA-1:cds;Parent=Msa0698570-mRNA-1 |
| chr4_4 | CDS | 68937091 | 68937141 | 68937091 | ID=Msa0698570-mRNA-1:cds;Parent=Msa0698570-mRNA-1 |
| chr4_4 | three_prime_UTR | 68937142 | 68937414 | 68937142 | ID=Msa0698570-mRNA-1:three_prime_utr;Parent=Msa0698570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
