Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698590 | XP_013457345.1 | 99.153 | 118 | 1 | 0 | 1 | 118 | 35 | 152 | 1.13e-79 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698590 | sp|O64702|HMG14_ARATH | 68.085 | 94 | 30 | 0 | 25 | 118 | 58 | 151 | 4.33e-44 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698590 | I3SF63 | 99.153 | 118 | 1 | 0 | 1 | 118 | 35 | 152 | 5.38e-80 | 241 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0698590 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615520 | Msa0698590 | 0.817111 | 3.906381e-52 | -8.615850e-47 |
| Msa0698570 | Msa0698590 | 0.896446 | 3.659877e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698590 | MtrunA17_Chr4g0052011 | 99.153 | 118 | 1 | 0 | 1 | 118 | 35 | 152 | 1.04e-83 | 241 |
| Msa0698590 | MtrunA17_Chr8g0370431 | 46.067 | 89 | 48 | 0 | 26 | 114 | 33 | 121 | 3.69e-24 | 90.1 |
| Msa0698590 | MtrunA17_Chr3g0143991 | 47.674 | 86 | 45 | 0 | 20 | 105 | 35 | 120 | 1.59e-23 | 88.6 |
| Msa0698590 | MtrunA17_Chr7g0242251 | 51.316 | 76 | 37 | 0 | 26 | 101 | 47 | 122 | 5.80e-23 | 87.8 |
| Msa0698590 | MtrunA17_Chr1g0212341 | 48.315 | 89 | 45 | 1 | 26 | 113 | 98 | 186 | 8.98e-22 | 85.5 |
| Msa0698590 | MtrunA17_Chr5g0407011 | 38.272 | 81 | 50 | 0 | 19 | 99 | 25 | 105 | 1.98e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698590 | AT2G34450.4 | 68.085 | 94 | 30 | 0 | 25 | 118 | 58 | 151 | 4.40e-45 | 143 |
| Msa0698590 | AT2G34450.3 | 68.085 | 94 | 30 | 0 | 25 | 118 | 58 | 151 | 4.40e-45 | 143 |
| Msa0698590 | AT2G34450.1 | 68.085 | 94 | 30 | 0 | 25 | 118 | 58 | 151 | 4.40e-45 | 143 |
| Msa0698590 | AT2G34450.2 | 67.368 | 95 | 30 | 1 | 25 | 118 | 58 | 152 | 2.92e-43 | 139 |
| Msa0698590 | AT3G51880.4 | 44.554 | 101 | 56 | 0 | 17 | 117 | 40 | 140 | 3.02e-24 | 91.3 |
| Msa0698590 | AT2G17560.3 | 43.478 | 115 | 61 | 1 | 8 | 118 | 13 | 127 | 3.25e-24 | 90.1 |
| Msa0698590 | AT2G17560.2 | 43.478 | 115 | 61 | 1 | 8 | 118 | 13 | 127 | 4.16e-24 | 90.1 |
| Msa0698590 | AT2G17560.1 | 43.478 | 115 | 61 | 1 | 8 | 118 | 13 | 127 | 4.16e-24 | 90.1 |
| Msa0698590 | AT3G51880.5 | 44.118 | 102 | 57 | 0 | 17 | 118 | 40 | 141 | 4.78e-24 | 90.9 |
| Msa0698590 | AT3G51880.1 | 44.118 | 102 | 57 | 0 | 17 | 118 | 40 | 141 | 4.78e-24 | 90.9 |
| Msa0698590 | AT3G51880.3 | 44.118 | 102 | 57 | 0 | 17 | 118 | 40 | 141 | 4.78e-24 | 90.9 |
| Msa0698590 | AT3G51880.2 | 44.118 | 102 | 57 | 0 | 17 | 118 | 40 | 141 | 5.22e-24 | 91.3 |
| Msa0698590 | AT4G35570.1 | 44.318 | 88 | 49 | 0 | 26 | 113 | 30 | 117 | 1.95e-22 | 85.5 |
| Msa0698590 | AT4G35570.2 | 44.318 | 88 | 49 | 0 | 26 | 113 | 30 | 117 | 1.95e-22 | 85.5 |
| Msa0698590 | AT1G20693.3 | 39.823 | 113 | 66 | 1 | 3 | 115 | 11 | 121 | 3.35e-22 | 85.5 |
| Msa0698590 | AT1G20693.1 | 39.823 | 113 | 66 | 1 | 3 | 115 | 11 | 121 | 3.44e-22 | 85.5 |
| Msa0698590 | AT1G20693.2 | 39.823 | 113 | 66 | 1 | 3 | 115 | 11 | 121 | 5.21e-22 | 84.7 |
| Msa0698590 | AT1G20696.1 | 45.556 | 90 | 47 | 1 | 26 | 115 | 31 | 118 | 5.55e-21 | 82.0 |
| Msa0698590 | AT1G20696.5 | 44.156 | 77 | 43 | 0 | 26 | 102 | 31 | 107 | 2.16e-18 | 75.5 |
| Msa0698590 | AT1G20696.2 | 44.156 | 77 | 43 | 0 | 26 | 102 | 31 | 107 | 2.49e-18 | 75.5 |
| Msa0698590 | AT5G23420.1 | 47.059 | 68 | 35 | 1 | 27 | 94 | 112 | 178 | 2.41e-13 | 64.3 |
| Msa0698590 | AT1G20696.4 | 43.243 | 74 | 40 | 1 | 42 | 115 | 5 | 76 | 1.78e-12 | 59.3 |
| Msa0698590 | AT1G20696.3 | 43.243 | 74 | 40 | 1 | 42 | 115 | 5 | 76 | 3.78e-12 | 58.5 |
Find 14 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATTCTGCACGTTTCT+CGG | 0.263566 | 4_4:-68942762 | None:intergenic |
| GACAGAGTATAACAAGAAAA+TGG | 0.358050 | 4_4:+68942793 | Msa0698590:CDS |
| TTAAGTCTCTTGACTTAGTC+TGG | 0.383960 | 4_4:-68940623 | None:intergenic |
| TCACGCATTGACTTAACATC+TGG | 0.420177 | 4_4:-68941405 | None:intergenic |
| GCAAGGCATGTGGAGAGAAG+TGG | 0.571530 | 4_4:+68941711 | Msa0698590:CDS |
| CGTGTTCATACAGATTGGCA+AGG | 0.572075 | 4_4:+68941694 | Msa0698590:intron |
| AAGAAGTAGAAGAAAGCAGT+GGG | 0.576065 | 4_4:-68940705 | None:intergenic |
| GAAGTAGAAGAAAGCAGTGG+GGG | 0.593069 | 4_4:-68940703 | None:intergenic |
| TCTGATGCTTTGCAGGAAAG+CGG | 0.595152 | 4_4:+68942888 | Msa0698590:intron |
| ATACAGATTGGCAAGGCATG+TGG | 0.602187 | 4_4:+68941701 | Msa0698590:intron |
| CGAATATGAAGAAACTGATG+AGG | 0.603289 | 4_4:+68942911 | Msa0698590:CDS |
| CAAGAAGTAGAAGAAAGCAG+TGG | 0.644048 | 4_4:-68940706 | None:intergenic |
| AAGTAGAAGAAAGCAGTGGG+GGG | 0.691336 | 4_4:-68940702 | None:intergenic |
| AGAAGTAGAAGAAAGCAGTG+GGG | 0.730489 | 4_4:-68940704 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAAGTTTCAAAAAT+TGG | + | chr4_4:68941843-68941862 | Msa0698590:intron | 10.0% |
| !! | ATAAATTATGTTTCAAAAAT+TGG | + | chr4_4:68941918-68941937 | Msa0698590:intron | 10.0% |
| !! | TTGTTATATTTGAAAAAAAT+TGG | + | chr4_4:68942075-68942094 | Msa0698590:intron | 10.0% |
| !! | TAAAAAAAATTAAAGTAAAG+GGG | + | chr4_4:68942437-68942456 | Msa0698590:intron | 10.0% |
| !!! | CGATTTTTATGTTTAATTAT+TGG | + | chr4_4:68942280-68942299 | Msa0698590:intron | 15.0% |
| !! | AACATCATAAATAAAGAACA+AGG | - | chr4_4:68940751-68940770 | None:intergenic | 20.0% |
| !!! | AATTTAGAACAAATGGAAAA+TGG | - | chr4_4:68940813-68940832 | None:intergenic | 20.0% |
| !!! | CCATAAAAATTTAGAACAAA+TGG | - | chr4_4:68940820-68940839 | None:intergenic | 20.0% |
| !!! | CCATTTGTTCTAAATTTTTA+TGG | + | chr4_4:68940817-68940836 | Msa0698590:intron | 20.0% |
| !! | ACTACTATTTACAGTATATT+TGG | + | chr4_4:68941225-68941244 | Msa0698590:intron | 20.0% |
| !!! | ACAATTGCTTCTTTTTTATA+TGG | + | chr4_4:68941289-68941308 | Msa0698590:intron | 20.0% |
| !!! | ATAACTGGCAATTTTTAAAA+TGG | - | chr4_4:68941566-68941585 | None:intergenic | 20.0% |
| !! | TCTCAAAAACATAAAATAAC+TGG | - | chr4_4:68941581-68941600 | None:intergenic | 20.0% |
| !! | TTTGAAAAAAATTGGAAAGT+TGG | + | chr4_4:68942083-68942102 | Msa0698590:intron | 20.0% |
| !! | TTATGTTTAATTATTGGTGT+TGG | + | chr4_4:68942286-68942305 | Msa0698590:intron | 20.0% |
| !!! | AAACTAGTTCTATATTGATT+TGG | - | chr4_4:68942583-68942602 | None:intergenic | 20.0% |
| !! | AGATCAAATTGAACATAATA+TGG | - | chr4_4:68942654-68942673 | None:intergenic | 20.0% |
| ! | ATCATAAATAAAGAACAAGG+AGG | - | chr4_4:68940748-68940767 | None:intergenic | 25.0% |
| ! | TAGTAATGAACCAGTAATTA+TGG | - | chr4_4:68940914-68940933 | None:intergenic | 25.0% |
| ! | AATAAGACATAGTAGAAACA+AGG | - | chr4_4:68941188-68941207 | None:intergenic | 25.0% |
| ! | TTCAAAATTACTGTGTTTAC+TGG | + | chr4_4:68941327-68941346 | Msa0698590:intron | 25.0% |
| !!! | AAGTTCTTTTTCATTCTGAA+GGG | + | chr4_4:68941350-68941369 | Msa0698590:intron | 25.0% |
| ! | TAGACGAAATATTAATACGA+CGG | - | chr4_4:68941445-68941464 | None:intergenic | 25.0% |
| !! | AATTCAGGTTAAATATGCAA+GGG | - | chr4_4:68941777-68941796 | None:intergenic | 25.0% |
| !! | TAACCTGAATTGTGTTATTA+TGG | + | chr4_4:68941786-68941805 | Msa0698590:intron | 25.0% |
| !! | GAATTTTGTCAAAACTGTTT+AGG | + | chr4_4:68941947-68941966 | Msa0698590:intron | 25.0% |
| !!! | AACTGTTTAGGTTTTTAATG+TGG | + | chr4_4:68941959-68941978 | Msa0698590:intron | 25.0% |
| !!! | ATCAGTTTTTTGACTCATTT+AGG | + | chr4_4:68942238-68942257 | Msa0698590:intron | 25.0% |
| !!! | TCAGTTTTTTGACTCATTTA+GGG | + | chr4_4:68942239-68942258 | Msa0698590:intron | 25.0% |
| ! | ATTATAAAGACACGTAAACT+GGG | - | chr4_4:68942402-68942421 | None:intergenic | 25.0% |
| ! | TAACAAAAATTGTATCTGAC+AGG | + | chr4_4:68942712-68942731 | Msa0698590:intron | 25.0% |
| AAAAGTAGCACCATAATTAC+TGG | + | chr4_4:68940901-68940920 | Msa0698590:intron | 30.0% | |
| !!! | GTATTTTACGGATTTTGACT+TGG | + | chr4_4:68941019-68941038 | Msa0698590:intron | 30.0% |
| GCTAATTGCTAATCAACAAA+TGG | - | chr4_4:68941067-68941086 | None:intergenic | 30.0% | |
| AAAACATGTTTGAAGATGAG+TGG | - | chr4_4:68941121-68941140 | None:intergenic | 30.0% | |
| ATAGTAGTATGATTGAGCAA+AGG | - | chr4_4:68941213-68941232 | None:intergenic | 30.0% | |
| TTACAGTATATTTGGCATTG+TGG | + | chr4_4:68941233-68941252 | Msa0698590:intron | 30.0% | |
| !! | GAAGTTCTTTTTCATTCTGA+AGG | + | chr4_4:68941349-68941368 | Msa0698590:intron | 30.0% |
| TGTAAAACAAAGTTGCTTCA+GGG | - | chr4_4:68941491-68941510 | None:intergenic | 30.0% | |
| TTGTAAAACAAAGTTGCTTC+AGG | - | chr4_4:68941492-68941511 | None:intergenic | 30.0% | |
| ! | CAATTCAGGTTAAATATGCA+AGG | - | chr4_4:68941778-68941797 | None:intergenic | 30.0% |
| CAACCATAATAACACAATTC+AGG | - | chr4_4:68941792-68941811 | None:intergenic | 30.0% | |
| TTGTCAGTTGTGATATTTGA+CGG | + | chr4_4:68941877-68941896 | Msa0698590:intron | 30.0% | |
| ! | TATGTTTCAAAAATTGGCTC+AGG | + | chr4_4:68941924-68941943 | Msa0698590:intron | 30.0% |
| ! | ATGTTTCAAAAATTGGCTCA+GGG | + | chr4_4:68941925-68941944 | Msa0698590:intron | 30.0% |
| ATTAACACGAGTACATTTGT+AGG | + | chr4_4:68942313-68942332 | Msa0698590:intron | 30.0% | |
| GATTATAAAGACACGTAAAC+TGG | - | chr4_4:68942403-68942422 | None:intergenic | 30.0% | |
| !! | TGGATGGTATTTTAGAAAAC+TGG | - | chr4_4:68942470-68942489 | None:intergenic | 30.0% |
| !! | TTCTAAAATACCATCCATTG+TGG | + | chr4_4:68942473-68942492 | Msa0698590:intron | 30.0% |
| ! | ATTTGGAATAAATAGCAGCA+CGG | - | chr4_4:68942566-68942585 | None:intergenic | 30.0% |
| GACAGAGTATAACAAGAAAA+TGG | + | chr4_4:68942793-68942812 | Msa0698590:CDS | 30.0% | |
| TAACCTATCTGTCATATTCA+TGG | + | chr4_4:68942816-68942835 | Msa0698590:intron | 30.0% | |
| TTAAGTCTCTTGACTTAGTC+TGG | - | chr4_4:68940626-68940645 | None:intergenic | 35.0% | |
| !!! | GTTCTTTTTTTGCACTGCTT+TGG | - | chr4_4:68940649-68940668 | None:intergenic | 35.0% |
| AAGAAGTAGAAGAAAGCAGT+GGG | - | chr4_4:68940708-68940727 | None:intergenic | 35.0% | |
| ACAAGAGTTTAGCTGCATTA+AGG | + | chr4_4:68940857-68940876 | Msa0698590:intron | 35.0% | |
| ACTGATATGTGTGTTTCCTT+TGG | + | chr4_4:68940961-68940980 | Msa0698590:intron | 35.0% | |
| ! | TATACTATCGCGTAAGTTGA+TGG | + | chr4_4:68940987-68941006 | Msa0698590:intron | 35.0% |
| !! | ATACTATCGCGTAAGTTGAT+GGG | + | chr4_4:68940988-68941007 | Msa0698590:intron | 35.0% |
| ! | TGGGGTTCTGTTGTATTTTA+CGG | + | chr4_4:68941007-68941026 | Msa0698590:intron | 35.0% |
| !!! | TTTTACGGATTTTGACTTGG+AGG | + | chr4_4:68941022-68941041 | Msa0698590:intron | 35.0% |
| GACATAGTAGAAACAAGGAA+AGG | - | chr4_4:68941183-68941202 | None:intergenic | 35.0% | |
| !! | TTCTTTTTCATTCTGAAGGG+AGG | + | chr4_4:68941353-68941372 | Msa0698590:intron | 35.0% |
| GTAAAACAAAGTTGCTTCAG+GGG | - | chr4_4:68941490-68941509 | None:intergenic | 35.0% | |
| ! | GATGATGATGATGATGATGA+TGG | - | chr4_4:68941616-68941635 | None:intergenic | 35.0% |
| ! | GTGGAAAACAATGACTTTTG+AGG | + | chr4_4:68941730-68941749 | Msa0698590:CDS | 35.0% |
| AAGAAGTCATGATCAAGACA+TGG | - | chr4_4:68942006-68942025 | None:intergenic | 35.0% | |
| TGGAAAGTTGGAATTCATTG+CGG | + | chr4_4:68942095-68942114 | Msa0698590:intron | 35.0% | |
| CCATTGTCAGGAATTTAAAC+AGG | - | chr4_4:68942619-68942638 | None:intergenic | 35.0% | |
| CCTGTTTAAATTCCTGACAA+TGG | + | chr4_4:68942616-68942635 | Msa0698590:intron | 35.0% | |
| TCAATTTGATCTGAGCAAGA+AGG | + | chr4_4:68942662-68942681 | Msa0698590:intron | 35.0% | |
| ATCAAATTCTGCACGTTTCT+CGG | - | chr4_4:68942765-68942784 | None:intergenic | 35.0% | |
| TAGCCATGAATATGACAGAT+AGG | - | chr4_4:68942822-68942841 | None:intergenic | 35.0% | |
| ! | CTAGTGAACTGACTCTTATT+TGG | + | chr4_4:68942839-68942858 | Msa0698590:intron | 35.0% |
| !! | TTTGTTTTCTGATGCTTTGC+AGG | + | chr4_4:68942881-68942900 | Msa0698590:intron | 35.0% |
| CGAATATGAAGAAACTGATG+AGG | + | chr4_4:68942911-68942930 | Msa0698590:CDS | 35.0% | |
| AGAAGTAGAAGAAAGCAGTG+GGG | - | chr4_4:68940707-68940726 | None:intergenic | 40.0% | |
| CAAGAAGTAGAAGAAAGCAG+TGG | - | chr4_4:68940709-68940728 | None:intergenic | 40.0% | |
| ACGCGATAGTATAACTCCAA+AGG | - | chr4_4:68940980-68940999 | None:intergenic | 40.0% | |
| !! | TACTATCGCGTAAGTTGATG+GGG | + | chr4_4:68940989-68941008 | Msa0698590:intron | 40.0% |
| !! | CATTCTGAAGGGAGGATTTT+CGG | + | chr4_4:68941361-68941380 | Msa0698590:intron | 40.0% |
| !! | TCACGCATTGACTTAACATC+TGG | - | chr4_4:68941408-68941427 | None:intergenic | 40.0% |
| CAATCTGTATGAACACGGAA+AGG | - | chr4_4:68941691-68941710 | None:intergenic | 40.0% | |
| CTTTCCGTGTTCATACAGAT+TGG | + | chr4_4:68941689-68941708 | Msa0698590:intron | 40.0% | |
| CTTGCCAATCTGTATGAACA+CGG | - | chr4_4:68941696-68941715 | None:intergenic | 40.0% | |
| AGCAGAACTGAAGATCACTT+TGG | + | chr4_4:68942120-68942139 | Msa0698590:intron | 40.0% | |
| AGGTAAGTTTCCACAATGGA+TGG | - | chr4_4:68942486-68942505 | None:intergenic | 40.0% | |
| ATCCATTGTGGAAACTTACC+TGG | + | chr4_4:68942485-68942504 | Msa0698590:intron | 40.0% | |
| TCCATTGTGGAAACTTACCT+GGG | + | chr4_4:68942486-68942505 | Msa0698590:intron | 40.0% | |
| ATACTTGACACTCCATTGTC+AGG | - | chr4_4:68942631-68942650 | None:intergenic | 40.0% | |
| AACATAGAGCTCAACCAAAG+CGG | - | chr4_4:68942693-68942712 | None:intergenic | 40.0% | |
| AAGTAGAAGAAAGCAGTGGG+GGG | - | chr4_4:68940705-68940724 | None:intergenic | 45.0% | |
| GAAGTAGAAGAAAGCAGTGG+GGG | - | chr4_4:68940706-68940725 | None:intergenic | 45.0% | |
| !!! | CGGATTTTGACTTGGAGGAA+TGG | + | chr4_4:68941027-68941046 | Msa0698590:intron | 45.0% |
| TCTCAGCTCTTGAACTTGAG+GGG | - | chr4_4:68941095-68941114 | None:intergenic | 45.0% | |
| GTCTCAGCTCTTGAACTTGA+GGG | - | chr4_4:68941096-68941115 | None:intergenic | 45.0% | |
| TGTCTCAGCTCTTGAACTTG+AGG | - | chr4_4:68941097-68941116 | None:intergenic | 45.0% | |
| TCTGTATGAACACGGAAAGG+AGG | - | chr4_4:68941688-68941707 | None:intergenic | 45.0% | |
| CGTGTTCATACAGATTGGCA+AGG | + | chr4_4:68941694-68941713 | Msa0698590:intron | 45.0% | |
| ATACAGATTGGCAAGGCATG+TGG | + | chr4_4:68941701-68941720 | Msa0698590:intron | 45.0% | |
| TCCCAGGTAAGTTTCCACAA+TGG | - | chr4_4:68942490-68942509 | None:intergenic | 45.0% | |
| TGGAAACTTACCTGGGACTA+AGG | + | chr4_4:68942493-68942512 | Msa0698590:intron | 45.0% | |
| TCTGATGCTTTGCAGGAAAG+CGG | + | chr4_4:68942888-68942907 | Msa0698590:intron | 45.0% | |
| !! | AATAAAAAAAATTAAAGTAA+AGG | + | chr4_4:68942435-68942454 | Msa0698590:intron | 5.0% |
| !! | ATAAAAAAAATTAAAGTAAA+GGG | + | chr4_4:68942436-68942455 | Msa0698590:intron | 5.0% |
| AAAGCAGTGGGGGGTTTCTT+CGG | - | chr4_4:68940696-68940715 | None:intergenic | 50.0% | |
| CTCAGCTCTTGAACTTGAGG+GGG | - | chr4_4:68941094-68941113 | None:intergenic | 50.0% | |
| TCTCCTCTGGTTGGAATTCC+AGG | + | chr4_4:68942204-68942223 | Msa0698590:intron | 50.0% | |
| AACTGATGATCATGCCAGCC+TGG | - | chr4_4:68942225-68942244 | None:intergenic | 50.0% | |
| CACGTAAACTGGGTGCTCTA+AGG | - | chr4_4:68942392-68942411 | None:intergenic | 50.0% | |
| AGCTTCTTCTCGATAGCAGC+AGG | - | chr4_4:68942529-68942548 | None:intergenic | 50.0% | |
| GCAAGAAGGAAACACCGCTT+TGG | + | chr4_4:68942676-68942695 | Msa0698590:intron | 50.0% | |
| GACTTGGAGGAATGGTGCAG+AGG | + | chr4_4:68941035-68941054 | Msa0698590:intron | 55.0% | |
| TTGGAGGAATGGTGCAGAGG+AGG | + | chr4_4:68941038-68941057 | Msa0698590:intron | 55.0% | |
| GCAAGGCATGTGGAGAGAAG+TGG | + | chr4_4:68941711-68941730 | Msa0698590:CDS | 55.0% | |
| AGTCGCAGAACTGTCTCCTC+TGG | + | chr4_4:68942191-68942210 | Msa0698590:intron | 55.0% | |
| GCAGAACTGTCTCCTCTGGT+TGG | + | chr4_4:68942195-68942214 | Msa0698590:intron | 55.0% | |
| CAGCCTGGAATTCCAACCAG+AGG | - | chr4_4:68942210-68942229 | None:intergenic | 55.0% | |
| CTCTGGTTGGAATTCCAGGC+TGG | + | chr4_4:68942208-68942227 | Msa0698590:intron | 55.0% | |
| CTTTCACGTGCCTTAGTCCC+AGG | - | chr4_4:68942506-68942525 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 68940606 | 68942953 | 68940606 | ID=Msa0698590;Name=Msa0698590 |
| chr4_4 | mRNA | 68940606 | 68942953 | 68940606 | ID=Msa0698590-mRNA-1;Parent=Msa0698590;Name=Msa0698590-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|5|0|118 |
| chr4_4 | exon | 68940606 | 68940727 | 68940606 | ID=Msa0698590-mRNA-1:exon:20561;Parent=Msa0698590-mRNA-1 |
| chr4_4 | exon | 68941371 | 68941428 | 68941371 | ID=Msa0698590-mRNA-1:exon:20562;Parent=Msa0698590-mRNA-1 |
| chr4_4 | exon | 68941707 | 68941751 | 68941707 | ID=Msa0698590-mRNA-1:exon:20563;Parent=Msa0698590-mRNA-1 |
| chr4_4 | exon | 68942734 | 68942814 | 68942734 | ID=Msa0698590-mRNA-1:exon:20564;Parent=Msa0698590-mRNA-1 |
| chr4_4 | exon | 68942903 | 68942953 | 68942903 | ID=Msa0698590-mRNA-1:exon:20565;Parent=Msa0698590-mRNA-1 |
| chr4_4 | CDS | 68940606 | 68940727 | 68940606 | ID=Msa0698590-mRNA-1:cds;Parent=Msa0698590-mRNA-1 |
| chr4_4 | CDS | 68941371 | 68941428 | 68941371 | ID=Msa0698590-mRNA-1:cds;Parent=Msa0698590-mRNA-1 |
| chr4_4 | CDS | 68941707 | 68941751 | 68941707 | ID=Msa0698590-mRNA-1:cds;Parent=Msa0698590-mRNA-1 |
| chr4_4 | CDS | 68942734 | 68942814 | 68942734 | ID=Msa0698590-mRNA-1:cds;Parent=Msa0698590-mRNA-1 |
| chr4_4 | CDS | 68942903 | 68942953 | 68942903 | ID=Msa0698590-mRNA-1:cds;Parent=Msa0698590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
