Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616460 | XP_039685192.1 | 98.817 | 169 | 2 | 0 | 1 | 169 | 1 | 169 | 1.28e-118 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616460 | sp|Q39263|ZFP4_ARATH | 50.735 | 136 | 39 | 6 | 57 | 168 | 78 | 209 | 1.55e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616460 | A0A396GPM5 | 98.817 | 169 | 2 | 0 | 1 | 169 | 1 | 169 | 6.09e-119 | 349 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0616460 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616460 | Msa0655930 | 0.985193 | 8.248807e-163 | -8.615850e-47 |
| Msa0616460 | Msa0699790 | 0.928360 | 3.225675e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616460 | MtrunA17_Chr8g0376021 | 98.817 | 169 | 2 | 0 | 1 | 169 | 1 | 169 | 1.17e-122 | 349 |
| Msa0616460 | MtrunA17_Chr1g0161901 | 53.365 | 208 | 57 | 8 | 1 | 169 | 2 | 208 | 2.35e-61 | 194 |
| Msa0616460 | MtrunA17_Chr3g0110091 | 49.324 | 148 | 71 | 3 | 21 | 168 | 47 | 190 | 6.45e-44 | 149 |
| Msa0616460 | MtrunA17_Chr5g0434121 | 49.682 | 157 | 71 | 5 | 17 | 167 | 39 | 193 | 7.25e-40 | 139 |
| Msa0616460 | MtrunA17_Chr2g0333741 | 66.667 | 81 | 21 | 2 | 59 | 133 | 78 | 158 | 7.46e-29 | 110 |
| Msa0616460 | MtrunA17_Chr1g0149811 | 38.194 | 144 | 63 | 3 | 15 | 132 | 37 | 180 | 4.11e-23 | 95.5 |
| Msa0616460 | MtrunA17_Chr4g0001081 | 40.426 | 141 | 66 | 4 | 2 | 136 | 6 | 134 | 1.42e-22 | 93.2 |
| Msa0616460 | MtrunA17_Chr1g0207691 | 45.192 | 104 | 49 | 3 | 46 | 149 | 51 | 146 | 3.31e-19 | 83.6 |
| Msa0616460 | MtrunA17_Chr3g0137111 | 50.562 | 89 | 26 | 4 | 61 | 132 | 71 | 158 | 9.76e-19 | 83.2 |
| Msa0616460 | MtrunA17_Chr4g0072571 | 65.517 | 58 | 18 | 1 | 62 | 119 | 45 | 100 | 1.54e-17 | 78.2 |
| Msa0616460 | MtrunA17_Chr4g0053691 | 47.368 | 76 | 26 | 2 | 57 | 132 | 62 | 123 | 6.14e-14 | 68.6 |
| Msa0616460 | MtrunA17_Chr3g0079221 | 50.794 | 63 | 31 | 0 | 227 | 289 | 5 | 67 | 1.13e-13 | 65.5 |
| Msa0616460 | MtrunA17_Chr7g0254221 | 58.000 | 50 | 19 | 1 | 51 | 98 | 20 | 69 | 4.82e-12 | 62.8 |
| Msa0616460 | MtrunA17_Chr7g0251581 | 68.421 | 38 | 12 | 0 | 57 | 94 | 34 | 71 | 8.74e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616460 | AT1G66140.1 | 50.735 | 136 | 39 | 6 | 57 | 168 | 78 | 209 | 1.58e-33 | 123 |
| Msa0616460 | AT1G80730.1 | 55.056 | 89 | 23 | 2 | 61 | 132 | 65 | 153 | 1.84e-24 | 99.0 |
| Msa0616460 | AT1G24625.1 | 47.107 | 121 | 43 | 5 | 59 | 173 | 54 | 159 | 9.50e-23 | 94.0 |
| Msa0616460 | AT5G25160.1 | 54.762 | 84 | 31 | 3 | 55 | 132 | 52 | 134 | 1.52e-21 | 91.3 |
| Msa0616460 | AT5G10970.1 | 41.985 | 131 | 66 | 5 | 11 | 132 | 46 | 175 | 1.96e-21 | 91.7 |
| Msa0616460 | AT5G57520.1 | 76.923 | 39 | 9 | 0 | 61 | 99 | 49 | 87 | 5.25e-16 | 73.9 |
| Msa0616460 | AT5G14010.1 | 72.222 | 36 | 10 | 0 | 62 | 97 | 36 | 71 | 6.22e-13 | 65.9 |
| Msa0616460 | AT5G01860.1 | 67.647 | 34 | 11 | 0 | 62 | 95 | 65 | 98 | 7.95e-11 | 61.2 |
Find 64 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGATAGAAACCATTT+TGG | 0.216847 | 4_2:-66287524 | Msa0616460:CDS |
| TTCGAGTGAGGCCGAGTTAA+TGG | 0.228364 | 4_2:-66287879 | Msa0616460:CDS |
| TTCGCAGCAGCTCTCATATC+TGG | 0.318459 | 4_2:+66287545 | None:intergenic |
| GCATGTTGAAGTTGTCTATA+GGG | 0.333306 | 4_2:-66283877 | Msa0616460:CDS |
| CTTGCATCTCTACCTCTTCA+TGG | 0.342785 | 4_2:-66287650 | Msa0616460:CDS |
| TCAGGTTCCAAGTTCAAGTT+TGG | 0.345240 | 4_2:+66287965 | None:intergenic |
| CGAAAACTAGCGATCCAAAA+TGG | 0.355731 | 4_2:+66287510 | None:intergenic |
| TGCAAGGCTTGTATACCTTT+CGG | 0.407124 | 4_2:+66287667 | None:intergenic |
| TGTCTACATAAGAGATGAAA+TGG | 0.420278 | 4_2:-66283688 | Msa0616460:CDS |
| GGCATGTTGAAGTTGTCTAT+AGG | 0.425631 | 4_2:-66283878 | Msa0616460:CDS |
| AGCTTCAATAAAGTAGGAAT+TGG | 0.428315 | 4_2:-66283711 | Msa0616460:CDS |
| TCGAGTGAGGCCGAGTTAAT+GGG | 0.432246 | 4_2:-66287878 | Msa0616460:CDS |
| GTCATCAGAACGCTCACAAA+AGG | 0.433204 | 4_2:-66287733 | Msa0616460:CDS |
| GGTCATAGGATCTAGATCTT+GGG | 0.441405 | 4_2:+66287925 | None:intergenic |
| GGGTCATAGGATCTAGATCT+TGG | 0.448749 | 4_2:+66287924 | None:intergenic |
| GGCTAAACGTGCAATGCGAA+TGG | 0.452909 | 4_2:-66287699 | Msa0616460:CDS |
| TTCTATAGCTCGCAAGCATT+AGG | 0.456033 | 4_2:-66287758 | Msa0616460:CDS |
| GATGACTCCAAACTTGAACT+TGG | 0.465674 | 4_2:-66287972 | Msa0616460:CDS |
| AGTGATGCTAGTAGTGAAGT+AGG | 0.485652 | 4_2:-66287851 | Msa0616460:CDS |
| TAATTACAAGAGAATATCCT+TGG | 0.504702 | 4_2:+66287794 | None:intergenic |
| GGACGCAACCACTTCATTTG+AGG | 0.505288 | 4_2:+66283780 | None:intergenic |
| TCTAGGAATGCAAAGTTGAA+TGG | 0.511144 | 4_2:-66283899 | Msa0616460:intron |
| GGCAGAAGCAGAGGAGCAAT+GGG | 0.513812 | 4_2:-66283813 | Msa0616460:CDS |
| AAGCCATACTTCCGGAATTG+AGG | 0.514925 | 4_2:+66284800 | None:intergenic |
| AGTGTCAAGTCAAGGGTCAT+AGG | 0.518887 | 4_2:+66287911 | None:intergenic |
| GGGCAGAAGCAGAGGAGCAA+TGG | 0.524300 | 4_2:-66283814 | Msa0616460:CDS |
| GAATAATGTTAATAGAAGAA+TGG | 0.528397 | 4_2:-66283854 | Msa0616460:CDS |
| TCTACAAGCTTCAATAAAGT+AGG | 0.530671 | 4_2:-66283717 | Msa0616460:CDS |
| TCTCTTGTAATTACTGCAAG+AGG | 0.530679 | 4_2:-66287784 | Msa0616460:CDS |
| GCTAAACGTGCAATGCGAAT+GGG | 0.536618 | 4_2:-66287698 | Msa0616460:CDS |
| AGGAAGGAATCACTATGGAC+TGG | 0.542809 | 4_2:-66284892 | Msa0616460:CDS |
| TGGATAGAAGCTAGAACGGT+GGG | 0.545301 | 4_2:-66283834 | Msa0616460:CDS |
| TGAAATTGAGTGTCAAGTCA+AGG | 0.555713 | 4_2:+66287903 | None:intergenic |
| TTACCAGGAAGGAATCACTA+TGG | 0.558404 | 4_2:-66284897 | Msa0616460:intron |
| AAGCAGAGGAGCAATGGGTA+TGG | 0.558685 | 4_2:-66283808 | Msa0616460:CDS |
| TCATCAGAACGCTCACAAAA+GGG | 0.564572 | 4_2:-66287732 | Msa0616460:CDS |
| TCAACACCAAGGGACCGAAA+AGG | 0.568839 | 4_2:+66287623 | None:intergenic |
| AGAACGGTGGGCAGAAGCAG+AGG | 0.570484 | 4_2:-66283822 | Msa0616460:CDS |
| GAAATTGAGTGTCAAGTCAA+GGG | 0.590766 | 4_2:+66287904 | None:intergenic |
| GTCATAGGATCTAGATCTTG+GGG | 0.590838 | 4_2:+66287926 | None:intergenic |
| TGGTAAATCCTCAAATGAAG+TGG | 0.591816 | 4_2:-66283788 | Msa0616460:CDS |
| CATGTTGAAGTTGTCTATAG+GGG | 0.596490 | 4_2:-66283876 | Msa0616460:CDS |
| CTTCGCCATCGGTAACTCCA+AGG | 0.598331 | 4_2:-66287811 | Msa0616460:CDS |
| TGCAACCATCGTCAACAATG+AGG | 0.600965 | 4_2:-66287571 | Msa0616460:CDS |
| TTCGTGGAAGATGATGATGT+AGG | 0.604810 | 4_2:-66287491 | Msa0616460:intron |
| GCAACCATCGTCAACAATGA+GGG | 0.605847 | 4_2:-66287570 | Msa0616460:CDS |
| ACTCAATTTCAGTTCGAGTG+AGG | 0.611871 | 4_2:-66287891 | Msa0616460:CDS |
| TGAAGTTCATGCTTCGCCAT+CGG | 0.612721 | 4_2:-66287822 | Msa0616460:CDS |
| ATCACTTGAACCCATTAACT+CGG | 0.613671 | 4_2:+66287868 | None:intergenic |
| AGAATGGATAGAAGCTAGAA+CGG | 0.614590 | 4_2:-66283838 | Msa0616460:CDS |
| AGAACGCTCACAAAAGGGAG+AGG | 0.635123 | 4_2:-66287727 | Msa0616460:CDS |
| CAGAATGAGCTTCAACACCA+AGG | 0.638470 | 4_2:+66287612 | None:intergenic |
| ATGGATAGAAGCTAGAACGG+TGG | 0.638817 | 4_2:-66283835 | Msa0616460:CDS |
| CATGAAGAGGTAGAGATGCA+AGG | 0.640521 | 4_2:+66287651 | None:intergenic |
| AATATCCTTGGAGTTACCGA+TGG | 0.642699 | 4_2:+66287806 | None:intergenic |
| GGAAGGAATCACTATGGACT+GGG | 0.645819 | 4_2:-66284891 | Msa0616460:CDS |
| GAATGGGAATGTTCACCGAA+AGG | 0.647190 | 4_2:-66287682 | Msa0616460:CDS |
| CGAAAAGGCGAACCATGAAG+AGG | 0.651068 | 4_2:+66287638 | None:intergenic |
| AGAATGAGCTTCAACACCAA+GGG | 0.655962 | 4_2:+66287613 | None:intergenic |
| TATAGCTCGCAAGCATTAGG+CGG | 0.663928 | 4_2:-66287755 | Msa0616460:CDS |
| GGAGCCCTCATTGTTGACGA+TGG | 0.667173 | 4_2:+66287566 | None:intergenic |
| TCACAAAAGGGAGAGGACGA+TGG | 0.689083 | 4_2:-66287720 | Msa0616460:CDS |
| AAGTGGTTGCGTCCTCCACG+AGG | 0.692583 | 4_2:-66283771 | Msa0616460:CDS |
| TCGTTGGAGCTAAAACAGTG+TGG | 0.704637 | 4_2:-66283659 | Msa0616460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAAATAATAATTTTTA+TGG | + | chr4_2:66287164-66287183 | None:intergenic | 0.0% |
| !!! | AAATTATTATTTTAATAAAA+AGG | - | chr4_2:66287167-66287186 | Msa0616460:intron | 0.0% |
| !!! | TTATTATTATTTTTTATGAG+GGG | - | chr4_2:66284544-66284563 | Msa0616460:intron | 10.0% |
| !! | ATTTAATAATTGAAAAGAAA+AGG | - | chr4_2:66285417-66285436 | Msa0616460:intron | 10.0% |
| !!! | TAATACAATATTTTATTTTC+AGG | + | chr4_2:66287514-66287533 | None:intergenic | 10.0% |
| !!! | GATTTGATTTAAATTTATTT+GGG | - | chr4_2:66287542-66287561 | Msa0616460:CDS | 10.0% |
| !! | AAGGTGAAATTAAAATAAAA+AGG | + | chr4_2:66284724-66284743 | None:intergenic | 15.0% |
| !! | ATTAGAAGAAAACATTAATA+AGG | + | chr4_2:66284743-66284762 | None:intergenic | 15.0% |
| !! | TTGGTTACAAAAAATAAAAA+AGG | + | chr4_2:66286202-66286221 | None:intergenic | 15.0% |
| !!! | AAAAAAGATCTAATTCTTTT+GGG | + | chr4_2:66286576-66286595 | None:intergenic | 15.0% |
| !!! | AAAAAAAGATCTAATTCTTT+TGG | + | chr4_2:66286577-66286596 | None:intergenic | 15.0% |
| !!! | TTTTAATAATAGTACCTAAT+AGG | - | chr4_2:66287043-66287062 | Msa0616460:intron | 15.0% |
| !! | TTGTGGAAAAAAAAAATTAA+GGG | + | chr4_2:66287248-66287267 | None:intergenic | 15.0% |
| !! | ATTGTGGAAAAAAAAAATTA+AGG | + | chr4_2:66287249-66287268 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTTTTTCCACAA+TGG | - | chr4_2:66287248-66287267 | Msa0616460:intron | 15.0% |
| !!! | TAATTTTTTTTTTCCACAAT+GGG | - | chr4_2:66287249-66287268 | Msa0616460:intron | 15.0% |
| !!! | CGATTTGATTTAAATTTATT+TGG | - | chr4_2:66287541-66287560 | Msa0616460:CDS | 15.0% |
| !! | TTAAAAAATATGTCAATTCA+AGG | - | chr4_2:66287609-66287628 | Msa0616460:CDS | 15.0% |
| !!! | AAATTTGATAGAAACCATTT+TGG | - | chr4_2:66284103-66284122 | Msa0616460:intron | 20.0% |
| !! | ATCTTAAGATTATTTGTCTT+TGG | - | chr4_2:66284609-66284628 | Msa0616460:intron | 20.0% |
| !!! | CTATTTTGCTAAACTTAATA+GGG | + | chr4_2:66284808-66284827 | None:intergenic | 20.0% |
| !! | CTATTAAGTTTAGCAAAATA+GGG | - | chr4_2:66284807-66284826 | Msa0616460:intron | 20.0% |
| !!! | TTTATTTTTTTCTCTCTATC+AGG | + | chr4_2:66285279-66285298 | None:intergenic | 20.0% |
| !! | AATTAATAAACAAAGATGAG+TGG | + | chr4_2:66285393-66285412 | None:intergenic | 20.0% |
| !! | ATAATTGAAAAGAAAAGGAA+CGG | - | chr4_2:66285422-66285441 | Msa0616460:intron | 20.0% |
| !! | ATATATATTTATAGCCTACA+GGG | - | chr4_2:66286107-66286126 | Msa0616460:intron | 20.0% |
| !! | AAATGCAATGATATTTGTTT+GGG | + | chr4_2:66286272-66286291 | None:intergenic | 20.0% |
| !! | AAAATGCAATGATATTTGTT+TGG | + | chr4_2:66286273-66286292 | None:intergenic | 20.0% |
| !!! | ACAAATATCATTGCATTTTT+TGG | - | chr4_2:66286274-66286293 | Msa0616460:intron | 20.0% |
| !!! | ATTTTAATAAAAAGGTGATG+TGG | - | chr4_2:66287175-66287194 | Msa0616460:intron | 20.0% |
| !!! | TTTTAATAAAAAGGTGATGT+GGG | - | chr4_2:66287176-66287195 | Msa0616460:intron | 20.0% |
| !! | CATTGTTCAATGTATTATTA+TGG | + | chr4_2:66287348-66287367 | None:intergenic | 20.0% |
| !!! | AAGTTCTTTTTCATATTTTG+TGG | - | chr4_2:66287632-66287651 | Msa0616460:CDS | 20.0% |
| !! | GAATAATGTTAATAGAAGAA+TGG | - | chr4_2:66287773-66287792 | Msa0616460:CDS | 20.0% |
| ! | TAATTACAAGAGAATATCCT+TGG | + | chr4_2:66283836-66283855 | None:intergenic | 25.0% |
| ! | ATATCCTCAAACTTCAAATT+CGG | - | chr4_2:66284216-66284235 | Msa0616460:intron | 25.0% |
| ! | TAAAAAGGTAAAATCGCTAT+TGG | + | chr4_2:66284709-66284728 | None:intergenic | 25.0% |
| !! | CCTATTTTGCTAAACTTAAT+AGG | + | chr4_2:66284809-66284828 | None:intergenic | 25.0% |
| ! | CCTATTAAGTTTAGCAAAAT+AGG | - | chr4_2:66284806-66284825 | Msa0616460:intron | 25.0% |
| ! | AATGAGAAAACAAAGATATG+TGG | - | chr4_2:66285131-66285150 | Msa0616460:intron | 25.0% |
| ! | AGAGAGAAAAAAATAAAGAG+TGG | - | chr4_2:66285282-66285301 | Msa0616460:intron | 25.0% |
| ! | AAGAGAAATGCATGAAAAAT+AGG | - | chr4_2:66285579-66285598 | Msa0616460:intron | 25.0% |
| ! | AGAGAAATGCATGAAAAATA+GGG | - | chr4_2:66285580-66285599 | Msa0616460:intron | 25.0% |
| ! | ATGAAAAATAGGGTCTTAAA+TGG | - | chr4_2:66285590-66285609 | Msa0616460:intron | 25.0% |
| ! | TGAAAAATAGGGTCTTAAAT+GGG | - | chr4_2:66285591-66285610 | Msa0616460:intron | 25.0% |
| !!! | GTTTTTTGGGTAATTATACT+TGG | + | chr4_2:66285637-66285656 | None:intergenic | 25.0% |
| !!! | ACCTACTATTAGTGTTTTTT+GGG | + | chr4_2:66285650-66285669 | None:intergenic | 25.0% |
| !!! | AACCTACTATTAGTGTTTTT+TGG | + | chr4_2:66285651-66285670 | None:intergenic | 25.0% |
| ! | AAAAACACTAATAGTAGGTT+TGG | - | chr4_2:66285651-66285670 | Msa0616460:intron | 25.0% |
| !!! | GTTAGGAAATTTTTTTACCA+TGG | - | chr4_2:66285770-66285789 | Msa0616460:intron | 25.0% |
| !! | ATAATAAGTTTGTTCTTGTC+TGG | + | chr4_2:66286013-66286032 | None:intergenic | 25.0% |
| ! | CATATATATTTATAGCCTAC+AGG | - | chr4_2:66286106-66286125 | Msa0616460:intron | 25.0% |
| ! | TTAATATTAAATGTCCCTGT+AGG | + | chr4_2:66286124-66286143 | None:intergenic | 25.0% |
| !! | ATATGGCAATTTTCTTCTTT+TGG | + | chr4_2:66286221-66286240 | None:intergenic | 25.0% |
| !!! | AAAAAAAAAAGCGTCCTTTT+CGG | + | chr4_2:66286340-66286359 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTCTTAGATGAAG+TGG | - | chr4_2:66286356-66286375 | Msa0616460:intron | 25.0% |
| ! | ATTATTCAGAATTAGATCTC+TGG | - | chr4_2:66286602-66286621 | Msa0616460:intron | 25.0% |
| ! | TTATTCAGAATTAGATCTCT+GGG | - | chr4_2:66286603-66286622 | Msa0616460:intron | 25.0% |
| !!! | GGATTTTTTTATGAAATAGG+AGG | + | chr4_2:66286794-66286813 | None:intergenic | 25.0% |
| !!! | CAGGGATTTTTTTATGAAAT+AGG | + | chr4_2:66286797-66286816 | None:intergenic | 25.0% |
| ! | AATTGAGGTAAAAAAAGTCA+GGG | + | chr4_2:66286815-66286834 | None:intergenic | 25.0% |
| ! | TCTCAAAGTAGAAAATCATA+TGG | - | chr4_2:66286869-66286888 | Msa0616460:intron | 25.0% |
| ! | CTCAAAGTAGAAAATCATAT+GGG | - | chr4_2:66286870-66286889 | Msa0616460:intron | 25.0% |
| !! | TTTTTCCTTAAAAAGAAACG+TGG | - | chr4_2:66286912-66286931 | Msa0616460:intron | 25.0% |
| ! | TTAAGACCTCATTCTTAAAT+GGG | + | chr4_2:66287202-66287221 | None:intergenic | 25.0% |
| ! | ATTAAGACCTCATTCTTAAA+TGG | + | chr4_2:66287203-66287222 | None:intergenic | 25.0% |
| TATCCTCAAACTTCAAATTC+GGG | - | chr4_2:66284217-66284236 | Msa0616460:intron | 30.0% | |
| ATTTGAGAGATGATACAAAC+TGG | - | chr4_2:66284308-66284327 | Msa0616460:intron | 30.0% | |
| TTTGAGAGATGATACAAACT+GGG | - | chr4_2:66284309-66284328 | Msa0616460:intron | 30.0% | |
| !! | AAACCATTTTTATGAGGTGT+CGG | - | chr4_2:66284334-66284353 | Msa0616460:intron | 30.0% |
| ! | ATTTTACGACTGTCCATAAA+GGG | + | chr4_2:66284408-66284427 | None:intergenic | 30.0% |
| ! | CCAACTCATTATTTTCTCAA+GGG | + | chr4_2:66284463-66284482 | None:intergenic | 30.0% |
| ! | ACCAACTCATTATTTTCTCA+AGG | + | chr4_2:66284464-66284483 | None:intergenic | 30.0% |
| ! | TTGAGAAAATAATGAGTTGG+TGG | - | chr4_2:66284463-66284482 | Msa0616460:intron | 30.0% |
| ! | AATGAGTGATTGAGCAATTT+TGG | + | chr4_2:66284525-66284544 | None:intergenic | 30.0% |
| AGATAAATGATACAAGCACT+TGG | + | chr4_2:66284593-66284612 | None:intergenic | 30.0% | |
| TGTCTAAATAAATGCATCTC+TGG | - | chr4_2:66284847-66284866 | Msa0616460:CDS | 30.0% | |
| GAACTCAAACCAAACAAAAT+CGG | + | chr4_2:66284912-66284931 | None:intergenic | 30.0% | |
| AGACTGTTTAATGGAAAACT+TGG | - | chr4_2:66284964-66284983 | Msa0616460:intron | 30.0% | |
| ! | ATTGGCTAAAGACTCTTTTA+AGG | - | chr4_2:66285068-66285087 | Msa0616460:intron | 30.0% |
| !!! | AGACTCTTTTAAGGTTTGAA+AGG | - | chr4_2:66285077-66285096 | Msa0616460:intron | 30.0% |
| !!! | GACTCTTTTAAGGTTTGAAA+GGG | - | chr4_2:66285078-66285097 | Msa0616460:intron | 30.0% |
| ! | TTTCTCATTTTCATGTCCTT+GGG | + | chr4_2:66285120-66285139 | None:intergenic | 30.0% |
| ! | TTTTCTCATTTTCATGTCCT+TGG | + | chr4_2:66285121-66285140 | None:intergenic | 30.0% |
| TGTACACTACTGCATTAAAA+CGG | - | chr4_2:66285192-66285211 | Msa0616460:intron | 30.0% | |
| GATATAAGGACACAAAAAGA+TGG | - | chr4_2:66285229-66285248 | Msa0616460:intron | 30.0% | |
| !! | TATGTTGGTAATGTGATAGA+AGG | - | chr4_2:66285323-66285342 | Msa0616460:intron | 30.0% |
| !! | ATGTTGGTAATGTGATAGAA+GGG | - | chr4_2:66285324-66285343 | Msa0616460:intron | 30.0% |
| ACCCAAAAAACACTAATAGT+AGG | - | chr4_2:66285646-66285665 | Msa0616460:intron | 30.0% | |
| !!! | ACACGTTTTAATTGGGTAAT+GGG | - | chr4_2:66286500-66286519 | Msa0616460:intron | 30.0% |
| GAATTGAGGTAAAAAAAGTC+AGG | + | chr4_2:66286816-66286835 | None:intergenic | 30.0% | |
| !!! | GACTTTTTTTACCTCAATTC+CGG | - | chr4_2:66286816-66286835 | Msa0616460:intron | 30.0% |
| TCATATGGGTTTGAATTTCA+AGG | - | chr4_2:66286884-66286903 | Msa0616460:intron | 30.0% | |
| !! | TCATCTTTGAGGTCTTAAAT+GGG | - | chr4_2:66286989-66287008 | Msa0616460:intron | 30.0% |
| CTCTAACAAAAGGTCTAATT+GGG | - | chr4_2:66287085-66287104 | Msa0616460:intron | 30.0% | |
| ! | TTTAAGACCTGATACCTAAT+AGG | + | chr4_2:66287279-66287298 | None:intergenic | 30.0% |
| ATGCATAAATATCGCAATCT+AGG | - | chr4_2:66287711-66287730 | Msa0616460:CDS | 30.0% | |
| ! | TTACACTTTAAAAAACCTCG+TGG | + | chr4_2:66287874-66287893 | None:intergenic | 30.0% |
| TCTACAAGCTTCAATAAAGT+AGG | - | chr4_2:66287910-66287929 | Msa0616460:CDS | 30.0% | |
| AGCTTCAATAAAGTAGGAAT+TGG | - | chr4_2:66287916-66287935 | Msa0616460:CDS | 30.0% | |
| TGTCTACATAAGAGATGAAA+TGG | - | chr4_2:66287939-66287958 | Msa0616460:CDS | 30.0% | |
| GAAATTGAGTGTCAAGTCAA+GGG | + | chr4_2:66283726-66283745 | None:intergenic | 35.0% | |
| TGAAATTGAGTGTCAAGTCA+AGG | + | chr4_2:66283727-66283746 | None:intergenic | 35.0% | |
| ATCACTTGAACCCATTAACT+CGG | + | chr4_2:66283762-66283781 | None:intergenic | 35.0% | |
| TCTCTTGTAATTACTGCAAG+AGG | - | chr4_2:66283843-66283862 | Msa0616460:CDS | 35.0% | |
| !! | ATGATGATGTAGGTAGCTTT+TGG | - | chr4_2:66284146-66284165 | Msa0616460:intron | 35.0% |
| CTATATTAACACTTCCTCCT+TGG | + | chr4_2:66284195-66284214 | None:intergenic | 35.0% | |
| !! | CAAGGAGGAAGTGTTAATAT+AGG | - | chr4_2:66284193-66284212 | Msa0616460:intron | 35.0% |
| ! | AAACCCGAATTTGAAGTTTG+AGG | + | chr4_2:66284223-66284242 | None:intergenic | 35.0% |
| !!! | AAATTCGGGTTTTGTTCCAA+TGG | - | chr4_2:66284231-66284250 | Msa0616460:intron | 35.0% |
| TATAGCTTCAGTGTAAGATC+AGG | + | chr4_2:66284286-66284305 | None:intergenic | 35.0% | |
| TTGAGAGATGATACAAACTG+GGG | - | chr4_2:66284310-66284329 | Msa0616460:intron | 35.0% | |
| !! | TGGGGTAAACCATTTTTATG+AGG | - | chr4_2:66284328-66284347 | Msa0616460:intron | 35.0% |
| ACAGAGTTCAAATCCCTTTA+TGG | - | chr4_2:66284392-66284411 | Msa0616460:intron | 35.0% | |
| ! | CATTTTACGACTGTCCATAA+AGG | + | chr4_2:66284409-66284428 | None:intergenic | 35.0% |
| CTTTATGGACAGTCGTAAAA+TGG | - | chr4_2:66284407-66284426 | Msa0616460:intron | 35.0% | |
| ACAGTCGTAAAATGGTCAAT+AGG | - | chr4_2:66284415-66284434 | Msa0616460:intron | 35.0% | |
| CCCTTGAGAAAATAATGAGT+TGG | - | chr4_2:66284460-66284479 | Msa0616460:intron | 35.0% | |
| ACAGCAATCATCAACAATGA+TGG | + | chr4_2:66284777-66284796 | None:intergenic | 35.0% | |
| ATATATAGTACCGTGAGATG+TGG | - | chr4_2:66284875-66284894 | Msa0616460:CDS | 35.0% | |
| !! | TAAACAGTCTTTCTGAGGTA+AGG | + | chr4_2:66284954-66284973 | None:intergenic | 35.0% |
| ACCTCAGAAAGACTGTTTAA+TGG | - | chr4_2:66284955-66284974 | Msa0616460:intron | 35.0% | |
| TCCATTAAACAGTCTTTCTG+AGG | + | chr4_2:66284959-66284978 | None:intergenic | 35.0% | |
| AGAGTCTTTAGCCAATATTG+TGG | + | chr4_2:66285064-66285083 | None:intergenic | 35.0% | |
| CAGTAGTGTACATAGATTGA+TGG | + | chr4_2:66285184-66285203 | None:intergenic | 35.0% | |
| AAGGAATGACAGTGGATATA+AGG | - | chr4_2:66285215-66285234 | Msa0616460:intron | 35.0% | |
| ! | TTTTCTCTCTATCAGGTGTA+TGG | + | chr4_2:66285272-66285291 | None:intergenic | 35.0% |
| ATCTAATAGCGGTGATATGT+TGG | - | chr4_2:66285308-66285327 | Msa0616460:intron | 35.0% | |
| ATAAACAAAGATGAGTGGAC+TGG | + | chr4_2:66285388-66285407 | None:intergenic | 35.0% | |
| ! | CCAATGAGGTTTTTAATGGA+GGG | + | chr4_2:66285467-66285486 | None:intergenic | 35.0% |
| ! | TCCAATGAGGTTTTTAATGG+AGG | + | chr4_2:66285468-66285487 | None:intergenic | 35.0% |
| ! | CTCTCCAATGAGGTTTTTAA+TGG | + | chr4_2:66285471-66285490 | None:intergenic | 35.0% |
| ! | TCTCTCTAGTGTTTCTATCA+CGG | + | chr4_2:66285503-66285522 | None:intergenic | 35.0% |
| TAGGTTTGGATACATGTTTC+AGG | - | chr4_2:66285665-66285684 | Msa0616460:intron | 35.0% | |
| !! | CTTTTGAGTAATCGTGTGTT+AGG | - | chr4_2:66285753-66285772 | Msa0616460:intron | 35.0% |
| TTAGTACTCGTTTGATTCCA+TGG | + | chr4_2:66285790-66285809 | None:intergenic | 35.0% | |
| TGAATAATGCATACCATCCA+TGG | - | chr4_2:66285861-66285880 | Msa0616460:intron | 35.0% | |
| !! | AAGTTTTATCGCTAGGTTCT+TGG | + | chr4_2:66285893-66285912 | None:intergenic | 35.0% |
| !! | TGTGTGTAAGTTTTATCGCT+AGG | + | chr4_2:66285900-66285919 | None:intergenic | 35.0% |
| TTACATGTTAGAACTCTCAC+TGG | - | chr4_2:66285941-66285960 | Msa0616460:intron | 35.0% | |
| ATTTACTTTCTCGGGAGATA+TGG | + | chr4_2:66286238-66286257 | None:intergenic | 35.0% | |
| GCAATGATATTTGTTTGGGA+AGG | + | chr4_2:66286268-66286287 | None:intergenic | 35.0% | |
| !! | GTGTGTGAGTTTATTTTCAG+TGG | + | chr4_2:66286386-66286405 | None:intergenic | 35.0% |
| TAAACTCACACACAATTGTG+AGG | - | chr4_2:66286393-66286412 | Msa0616460:intron | 35.0% | |
| !! | AGGAAAGGACACGTTTTAAT+TGG | - | chr4_2:66286492-66286511 | Msa0616460:intron | 35.0% |
| !!! | GGAAAGGACACGTTTTAATT+GGG | - | chr4_2:66286493-66286512 | Msa0616460:intron | 35.0% |
| !!! | GACACGTTTTAATTGGGTAA+TGG | - | chr4_2:66286499-66286518 | Msa0616460:intron | 35.0% |
| !! | TAATTGGGTAATGGGTGTAT+CGG | - | chr4_2:66286508-66286527 | Msa0616460:intron | 35.0% |
| ! | TTATTTCAATGCTGCTTACC+AGG | - | chr4_2:66286715-66286734 | Msa0616460:intron | 35.0% |
| TGGGTTTGAATTTCAAGGAT+TGG | - | chr4_2:66286889-66286908 | Msa0616460:intron | 35.0% | |
| TTCCTTAAAAAGAAACGTGG+CGG | - | chr4_2:66286915-66286934 | Msa0616460:intron | 35.0% | |
| !! | CTCATCTTTGAGGTCTTAAA+TGG | - | chr4_2:66286988-66287007 | Msa0616460:intron | 35.0% |
| ! | CCAATTAGACCTTTTGTTAG+AGG | + | chr4_2:66287087-66287106 | None:intergenic | 35.0% |
| CCTCTAACAAAAGGTCTAAT+TGG | - | chr4_2:66287084-66287103 | Msa0616460:intron | 35.0% | |
| ! | TTGAACAATGAACTTGCTTC+TGG | - | chr4_2:66287358-66287377 | Msa0616460:intron | 35.0% |
| AAATGTTAACTAGTACCCCT+GGG | - | chr4_2:66287565-66287584 | Msa0616460:CDS | 35.0% | |
| TCTAGGAATGCAAAGTTGAA+TGG | - | chr4_2:66287728-66287747 | Msa0616460:CDS | 35.0% | |
| GCATGTTGAAGTTGTCTATA+GGG | - | chr4_2:66287750-66287769 | Msa0616460:CDS | 35.0% | |
| CATGTTGAAGTTGTCTATAG+GGG | - | chr4_2:66287751-66287770 | Msa0616460:CDS | 35.0% | |
| AGAATGGATAGAAGCTAGAA+CGG | - | chr4_2:66287789-66287808 | Msa0616460:CDS | 35.0% | |
| TGGTAAATCCTCAAATGAAG+TGG | - | chr4_2:66287839-66287858 | Msa0616460:CDS | 35.0% | |
| ! | GATGAAATGGAGTTTTTCGT+TGG | - | chr4_2:66287952-66287971 | Msa0616460:CDS | 35.0% |
| GATGACTCCAAACTTGAACT+TGG | - | chr4_2:66283655-66283674 | Msa0616460:CDS | 40.0% | |
| ! | TCAGGTTCCAAGTTCAAGTT+TGG | + | chr4_2:66283665-66283684 | None:intergenic | 40.0% |
| GTCATAGGATCTAGATCTTG+GGG | + | chr4_2:66283704-66283723 | None:intergenic | 40.0% | |
| GGTCATAGGATCTAGATCTT+GGG | + | chr4_2:66283705-66283724 | None:intergenic | 40.0% | |
| ACTCAATTTCAGTTCGAGTG+AGG | - | chr4_2:66283736-66283755 | Msa0616460:CDS | 40.0% | |
| AGTGATGCTAGTAGTGAAGT+AGG | - | chr4_2:66283776-66283795 | Msa0616460:CDS | 40.0% | |
| AATATCCTTGGAGTTACCGA+TGG | + | chr4_2:66283824-66283843 | None:intergenic | 40.0% | |
| TTCTATAGCTCGCAAGCATT+AGG | - | chr4_2:66283869-66283888 | Msa0616460:CDS | 40.0% | |
| TCATCAGAACGCTCACAAAA+GGG | - | chr4_2:66283895-66283914 | Msa0616460:CDS | 40.0% | |
| TGCAAGGCTTGTATACCTTT+CGG | + | chr4_2:66283963-66283982 | None:intergenic | 40.0% | |
| AGAATGAGCTTCAACACCAA+GGG | + | chr4_2:66284017-66284036 | None:intergenic | 40.0% | |
| CGAAAACTAGCGATCCAAAA+TGG | + | chr4_2:66284120-66284139 | None:intergenic | 40.0% | |
| !!! | TTTTGGATCGCTAGTTTTCG+TGG | - | chr4_2:66284120-66284139 | Msa0616460:intron | 40.0% |
| ! | TTCGTGGAAGATGATGATGT+AGG | - | chr4_2:66284136-66284155 | Msa0616460:intron | 40.0% |
| GAACCGACACCTCATAAAAA+TGG | + | chr4_2:66284340-66284359 | None:intergenic | 40.0% | |
| GAGCTTGACTATGTAACTTC+AGG | - | chr4_2:66284369-66284388 | Msa0616460:intron | 40.0% | |
| AGGGGTTTATGACTTTGTGA+AGG | - | chr4_2:66284562-66284581 | Msa0616460:intron | 40.0% | |
| !! | CAAAGTGGACCGATTTTGTT+TGG | - | chr4_2:66284900-66284919 | Msa0616460:intron | 40.0% |
| ! | GACAAGAATCTAGAACCACT+GGG | + | chr4_2:66285035-66285054 | None:intergenic | 40.0% |
| !! | TGGTTCTAGATTCTTGTCCA+TGG | - | chr4_2:66285037-66285056 | Msa0616460:intron | 40.0% |
| TTGTCCATGGACCACAATAT+TGG | - | chr4_2:66285050-66285069 | Msa0616460:intron | 40.0% | |
| TTAGCCAATATTGTGGTCCA+TGG | + | chr4_2:66285057-66285076 | None:intergenic | 40.0% | |
| CACTACTGCATTAAAACGGA+AGG | - | chr4_2:66285196-66285215 | Msa0616460:intron | 40.0% | |
| TAAAACGGAAGGAATGACAG+TGG | - | chr4_2:66285207-66285226 | Msa0616460:intron | 40.0% | |
| AAGAGTGGTCGATCTAATAG+CGG | - | chr4_2:66285297-66285316 | Msa0616460:intron | 40.0% | |
| !! | TTGGTAATGTGATAGAAGGG+AGG | - | chr4_2:66285327-66285346 | Msa0616460:intron | 40.0% |
| CCCTCCATTAAAAACCTCAT+TGG | - | chr4_2:66285464-66285483 | Msa0616460:intron | 40.0% | |
| CACACGATTACTCAAAAGCT+AGG | + | chr4_2:66285751-66285770 | None:intergenic | 40.0% | |
| TTCTTGGAACATTCCATGGA+TGG | + | chr4_2:66285877-66285896 | None:intergenic | 40.0% | |
| TAGGTTCTTGGAACATTCCA+TGG | + | chr4_2:66285881-66285900 | None:intergenic | 40.0% | |
| TCTGGTAAGTGTAGCTCATA+TGG | + | chr4_2:66285995-66286014 | None:intergenic | 40.0% | |
| GCTTCGCTATTTACTTTCTC+GGG | + | chr4_2:66286246-66286265 | None:intergenic | 40.0% | |
| GGCTTCGCTATTTACTTTCT+CGG | + | chr4_2:66286247-66286266 | None:intergenic | 40.0% | |
| AAGGAGGAGAGAGAAAATTC+AGG | + | chr4_2:66286312-66286331 | None:intergenic | 40.0% | |
| TGACAAATGCCGAAATTGCA+AGG | + | chr4_2:66286451-66286470 | None:intergenic | 40.0% | |
| !! | AATTGGGTAATGGGTGTATC+GGG | - | chr4_2:66286509-66286528 | Msa0616460:intron | 40.0% |
| TTACCAGGAAGGAATCACTA+TGG | - | chr4_2:66286730-66286749 | Msa0616460:intron | 40.0% | |
| TTACCTCAATTCCGGAAGTA+TGG | - | chr4_2:66286824-66286843 | Msa0616460:intron | 40.0% | |
| !! | AATTCCGGAAGTATGGCTTT+TGG | - | chr4_2:66286831-66286850 | Msa0616460:intron | 40.0% |
| !! | ATTCCGGAAGTATGGCTTTT+GGG | - | chr4_2:66286832-66286851 | Msa0616460:intron | 40.0% |
| AAAGATGAGAGTCTCCATTG+TGG | + | chr4_2:66286977-66286996 | None:intergenic | 40.0% | |
| AATGGAGACTCTCATCTTTG+AGG | - | chr4_2:66286978-66286997 | Msa0616460:intron | 40.0% | |
| ! | TTTTGTTAGAGGATCTCCAG+TGG | + | chr4_2:66287076-66287095 | None:intergenic | 40.0% |
| ACTGGAGATCCTCTAACAAA+AGG | - | chr4_2:66287075-66287094 | Msa0616460:intron | 40.0% | |
| ATGTTTAGACTCTCCCATTG+TGG | - | chr4_2:66287298-66287317 | Msa0616460:intron | 40.0% | |
| GAAATGTTAACTAGTACCCC+TGG | - | chr4_2:66287564-66287583 | Msa0616460:CDS | 40.0% | |
| GGAAACTTACTCGCGATAAT+AGG | - | chr4_2:66287653-66287672 | Msa0616460:CDS | 40.0% | |
| GGCATGTTGAAGTTGTCTAT+AGG | - | chr4_2:66287749-66287768 | Msa0616460:CDS | 40.0% | |
| ! | CACTTTAAAAAACCTCGTGG+AGG | + | chr4_2:66287871-66287890 | None:intergenic | 40.0% |
| !! | GGTGCTTCTGACTGATTTTC+AGG | + | chr4_2:66283683-66283702 | None:intergenic | 45.0% |
| GGGTCATAGGATCTAGATCT+TGG | + | chr4_2:66283706-66283725 | None:intergenic | 45.0% | |
| AGTGTCAAGTCAAGGGTCAT+AGG | + | chr4_2:66283719-66283738 | None:intergenic | 45.0% | |
| TGAAGTTCATGCTTCGCCAT+CGG | - | chr4_2:66283805-66283824 | Msa0616460:CDS | 45.0% | |
| TATAGCTCGCAAGCATTAGG+CGG | - | chr4_2:66283872-66283891 | Msa0616460:CDS | 45.0% | |
| GTCATCAGAACGCTCACAAA+AGG | - | chr4_2:66283894-66283913 | Msa0616460:CDS | 45.0% | |
| GCTAAACGTGCAATGCGAAT+GGG | - | chr4_2:66283929-66283948 | Msa0616460:intron | 45.0% | |
| GAATGGGAATGTTCACCGAA+AGG | - | chr4_2:66283945-66283964 | Msa0616460:intron | 45.0% | |
| CATGAAGAGGTAGAGATGCA+AGG | + | chr4_2:66283979-66283998 | None:intergenic | 45.0% | |
| CTTGCATCTCTACCTCTTCA+TGG | - | chr4_2:66283977-66283996 | Msa0616460:intron | 45.0% | |
| ! | CTCTTCATGGTTCGCCTTTT+CGG | - | chr4_2:66283990-66284009 | Msa0616460:intron | 45.0% |
| CAGAATGAGCTTCAACACCA+AGG | + | chr4_2:66284018-66284037 | None:intergenic | 45.0% | |
| TGCAACCATCGTCAACAATG+AGG | - | chr4_2:66284056-66284075 | Msa0616460:intron | 45.0% | |
| GCAACCATCGTCAACAATGA+GGG | - | chr4_2:66284057-66284076 | Msa0616460:intron | 45.0% | |
| ! | TCCACCTGTCTAAAACTTCC+GGG | + | chr4_2:66284172-66284191 | None:intergenic | 45.0% |
| ! | GTCCACCTGTCTAAAACTTC+CGG | + | chr4_2:66284173-66284192 | None:intergenic | 45.0% |
| !!! | AGTTTTAGACAGGTGGACCA+AGG | - | chr4_2:66284175-66284194 | Msa0616460:intron | 45.0% |
| !! | TTATGAGGTGTCGGTTCAAG+TGG | - | chr4_2:66284343-66284362 | Msa0616460:intron | 45.0% |
| !! | GAGTTGGTGGTTGTAAGAAG+TGG | - | chr4_2:66284476-66284495 | Msa0616460:intron | 45.0% |
| CCACTTTGAACCACATCTCA+CGG | + | chr4_2:66284888-66284907 | None:intergenic | 45.0% | |
| AGAACCACTGGGACTTTACT+TGG | + | chr4_2:66285024-66285043 | None:intergenic | 45.0% | |
| ! | GGACAAGAATCTAGAACCAC+TGG | + | chr4_2:66285036-66285055 | None:intergenic | 45.0% |
| ACAAAGATATGTGGACCACG+TGG | - | chr4_2:66285140-66285159 | Msa0616460:intron | 45.0% | |
| GGAACGGCAAAGATTAACAC+TGG | - | chr4_2:66285438-66285457 | Msa0616460:intron | 45.0% | |
| AACCTCATTGGAGAGAATCC+TGG | - | chr4_2:66285476-66285495 | Msa0616460:intron | 45.0% | |
| ! | TAGTGTTTCTATCACGGACC+AGG | + | chr4_2:66285497-66285516 | None:intergenic | 45.0% |
| GAGAGTGATCGATCTAGTAG+AGG | - | chr4_2:66285533-66285552 | Msa0616460:intron | 45.0% | |
| GAGGAGAGAGAAAATTCAGG+AGG | + | chr4_2:66286309-66286328 | None:intergenic | 45.0% | |
| CTCCTCCTTGTATTCCGAAA+AGG | - | chr4_2:66286323-66286342 | Msa0616460:intron | 45.0% | |
| ! | GTCCTTTTCGGAATACAAGG+AGG | + | chr4_2:66286328-66286347 | None:intergenic | 45.0% |
| ! | AGCGTCCTTTTCGGAATACA+AGG | + | chr4_2:66286331-66286350 | None:intergenic | 45.0% |
| AAATGCCGAAATTGCAAGGC+CGG | + | chr4_2:66286447-66286466 | None:intergenic | 45.0% | |
| TTGAGCTAGGACTTCTAGAC+AGG | - | chr4_2:66286472-66286491 | Msa0616460:intron | 45.0% | |
| CTAGGACTTCTAGACAGGAA+AGG | - | chr4_2:66286477-66286496 | Msa0616460:intron | 45.0% | |
| TGGGTGTATCGGGATGATTT+CGG | - | chr4_2:66286519-66286538 | Msa0616460:intron | 45.0% | |
| TCTCGTCGCGTTATATAGCA+TGG | - | chr4_2:66286548-66286567 | Msa0616460:intron | 45.0% | |
| ! | TTCAATGCTGCTTACCAGGA+AGG | - | chr4_2:66286719-66286738 | Msa0616460:intron | 45.0% |
| AGTCCATAGTGATTCCTTCC+TGG | + | chr4_2:66286736-66286755 | None:intergenic | 45.0% | |
| AGGAAGGAATCACTATGGAC+TGG | - | chr4_2:66286735-66286754 | Msa0616460:intron | 45.0% | |
| GGAAGGAATCACTATGGACT+GGG | - | chr4_2:66286736-66286755 | Msa0616460:intron | 45.0% | |
| !!! | CACTATGGACTGGGTCTTTT+AGG | - | chr4_2:66286745-66286764 | Msa0616460:intron | 45.0% |
| !! | ACTGGGTCTTTTAGGTGCAA+AGG | - | chr4_2:66286753-66286772 | Msa0616460:intron | 45.0% |
| !! | CTGGGTCTTTTAGGTGCAAA+GGG | - | chr4_2:66286754-66286773 | Msa0616460:intron | 45.0% |
| AAGCCATACTTCCGGAATTG+AGG | + | chr4_2:66286830-66286849 | None:intergenic | 45.0% | |
| !! | TTCCGGAAGTATGGCTTTTG+GGG | - | chr4_2:66286833-66286852 | Msa0616460:intron | 45.0% |
| ! | CACCGCCACGTTTCTTTTTA+AGG | + | chr4_2:66286920-66286939 | None:intergenic | 45.0% |
| ! | ATGCTCTGAGTGGACAACAA+GGG | + | chr4_2:66286954-66286973 | None:intergenic | 45.0% |
| CCAGTGGTTGAGTACCTATT+AGG | + | chr4_2:66287060-66287079 | None:intergenic | 45.0% | |
| CCTAATAGGTACTCAACCAC+TGG | - | chr4_2:66287057-66287076 | Msa0616460:intron | 45.0% | |
| TGTGGGCCCATTTAAGAATG+AGG | - | chr4_2:66287193-66287212 | Msa0616460:intron | 45.0% | |
| CCTAATAGGTACTCCCATTG+TGG | + | chr4_2:66287265-66287284 | None:intergenic | 45.0% | |
| !! | CCACAATGGGAGTACCTATT+AGG | - | chr4_2:66287262-66287281 | Msa0616460:intron | 45.0% |
| !! | GGGAGTACCTATTAGGTATC+AGG | - | chr4_2:66287269-66287288 | Msa0616460:intron | 45.0% |
| !! | CACATGAGAGCATCCACAAT+GGG | + | chr4_2:66287314-66287333 | None:intergenic | 45.0% |
| !! | ACACATGAGAGCATCCACAA+TGG | + | chr4_2:66287315-66287334 | None:intergenic | 45.0% |
| CTACAACGCTGTAGAGTTTG+TGG | - | chr4_2:66287686-66287705 | Msa0616460:CDS | 45.0% | |
| ATGGATAGAAGCTAGAACGG+TGG | - | chr4_2:66287792-66287811 | Msa0616460:CDS | 45.0% | |
| TGGATAGAAGCTAGAACGGT+GGG | - | chr4_2:66287793-66287812 | Msa0616460:CDS | 45.0% | |
| TCGTTGGAGCTAAAACAGTG+TGG | - | chr4_2:66287968-66287987 | Msa0616460:CDS | 45.0% | |
| !!! | ATTTATTATTATTTTTTATG+AGG | - | chr4_2:66284542-66284561 | Msa0616460:intron | 5.0% |
| !!! | TTTATTATTATTTTTTATGA+GGG | - | chr4_2:66284543-66284562 | Msa0616460:intron | 5.0% |
| !! | ATTAAATAAATAATATTGAT+GGG | + | chr4_2:66287112-66287131 | None:intergenic | 5.0% |
| !! | TATTAAATAAATAATATTGA+TGG | + | chr4_2:66287113-66287132 | None:intergenic | 5.0% |
| !!! | TTAATTTTAATTTGATATAA+TGG | - | chr4_2:66287467-66287486 | Msa0616460:intron | 5.0% |
| TTCGAGTGAGGCCGAGTTAA+TGG | - | chr4_2:66283748-66283767 | Msa0616460:CDS | 50.0% | |
| TCGAGTGAGGCCGAGTTAAT+GGG | - | chr4_2:66283749-66283768 | Msa0616460:CDS | 50.0% | |
| AGAACGCTCACAAAAGGGAG+AGG | - | chr4_2:66283900-66283919 | Msa0616460:intron | 50.0% | |
| TCACAAAAGGGAGAGGACGA+TGG | - | chr4_2:66283907-66283926 | Msa0616460:intron | 50.0% | |
| GGCTAAACGTGCAATGCGAA+TGG | - | chr4_2:66283928-66283947 | Msa0616460:intron | 50.0% | |
| CGAAAAGGCGAACCATGAAG+AGG | + | chr4_2:66283992-66284011 | None:intergenic | 50.0% | |
| TCAACACCAAGGGACCGAAA+AGG | + | chr4_2:66284007-66284026 | None:intergenic | 50.0% | |
| TTCGCAGCAGCTCTCATATC+TGG | + | chr4_2:66284085-66284104 | None:intergenic | 50.0% | |
| ! | GATGTAGGTAGCTTTTGGCC+CGG | - | chr4_2:66284151-66284170 | Msa0616460:intron | 50.0% |
| !!! | TTGGCCCGGAAGTTTTAGAC+AGG | - | chr4_2:66284165-66284184 | Msa0616460:intron | 50.0% |
| TTTAGACAGGTGGACCAAGG+AGG | - | chr4_2:66284178-66284197 | Msa0616460:intron | 50.0% | |
| TCAGGAGATGCAGATGCTTG+AGG | + | chr4_2:66284268-66284287 | None:intergenic | 50.0% | |
| CCGTGAGATGTGGTTCAAAG+TGG | - | chr4_2:66284885-66284904 | Msa0616460:CDS | 50.0% | |
| GCTACCAAGTAAAGTCCCAG+TGG | - | chr4_2:66285017-66285036 | Msa0616460:intron | 50.0% | |
| CATGTGCATCTTCAACCACG+TGG | + | chr4_2:66285158-66285177 | None:intergenic | 50.0% | |
| !! | ATGAGTGGACTGGATTCCAC+TGG | + | chr4_2:66285378-66285397 | None:intergenic | 50.0% |
| GACCAGGATTCTCTCCAATG+AGG | + | chr4_2:66285481-66285500 | None:intergenic | 50.0% | |
| CACACACAATTGTGAGGTCC+CGG | - | chr4_2:66286399-66286418 | Msa0616460:intron | 50.0% | |
| ACACACAATTGTGAGGTCCC+GGG | - | chr4_2:66286400-66286419 | Msa0616460:intron | 50.0% | |
| CGGCATTTGTCAGTTGAGCT+AGG | - | chr4_2:66286459-66286478 | Msa0616460:intron | 50.0% | |
| GGGTGTATCGGGATGATTTC+GGG | - | chr4_2:66286520-66286539 | Msa0616460:intron | 50.0% | |
| !! | TCCGGAAGTATGGCTTTTGG+GGG | - | chr4_2:66286834-66286853 | Msa0616460:intron | 50.0% |
| ! | GATGCTCTGAGTGGACAACA+AGG | + | chr4_2:66286955-66286974 | None:intergenic | 50.0% |
| ! | TCCACTCAGAGCATCCACAA+TGG | - | chr4_2:66286960-66286979 | Msa0616460:intron | 50.0% |
| ! | TCCATTGTGGATGCTCTGAG+TGG | + | chr4_2:66286964-66286983 | None:intergenic | 50.0% |
| AATGTCCAACCAGTGTCCCA+GGG | + | chr4_2:66287584-66287603 | None:intergenic | 50.0% | |
| AAATGTCCAACCAGTGTCCC+AGG | + | chr4_2:66287585-66287604 | None:intergenic | 50.0% | |
| AAGCAGAGGAGCAATGGGTA+TGG | - | chr4_2:66287819-66287838 | Msa0616460:CDS | 50.0% | |
| GGACGCAACCACTTCATTTG+AGG | + | chr4_2:66287850-66287869 | None:intergenic | 50.0% | |
| CTTCGCCATCGGTAACTCCA+AGG | - | chr4_2:66283816-66283835 | Msa0616460:CDS | 55.0% | |
| GGAGCCCTCATTGTTGACGA+TGG | + | chr4_2:66284064-66284083 | None:intergenic | 55.0% | |
| !!! | GCCCGGAAGTTTTAGACAGG+TGG | - | chr4_2:66284168-66284187 | Msa0616460:intron | 55.0% |
| GATGCAGATGCTTGAGGTGG+AGG | + | chr4_2:66284262-66284281 | None:intergenic | 55.0% | |
| GGAGATGCAGATGCTTGAGG+TGG | + | chr4_2:66284265-66284284 | None:intergenic | 55.0% | |
| ! | TTGAAAGGGCGTAGCAGCGT+AGG | - | chr4_2:66285092-66285111 | Msa0616460:intron | 55.0% |
| !! | GTGGACTGGATTCCACTGGA+CGG | + | chr4_2:66285374-66285393 | None:intergenic | 55.0% |
| GACGTCCGGCCTTGCAATTT+CGG | - | chr4_2:66286439-66286458 | Msa0616460:intron | 55.0% | |
| CCCCCCAAAAGCCATACTTC+CGG | + | chr4_2:66286838-66286857 | None:intergenic | 55.0% | |
| !! | CCGGAAGTATGGCTTTTGGG+GGG | - | chr4_2:66286835-66286854 | Msa0616460:intron | 55.0% |
| AACTAGTACCCCTGGGACAC+TGG | - | chr4_2:66287572-66287591 | Msa0616460:CDS | 55.0% | |
| ATGTCCAACCAGTGTCCCAG+GGG | + | chr4_2:66287583-66287602 | None:intergenic | 55.0% | |
| GGCAGAAGCAGAGGAGCAAT+GGG | - | chr4_2:66287814-66287833 | Msa0616460:CDS | 55.0% | |
| ! | GGTTCGCCTTTTCGGTCCCT+TGG | - | chr4_2:66283998-66284017 | Msa0616460:intron | 60.0% |
| !! | TGAGGTGGAGGAGGTGCCAT+TGG | + | chr4_2:66284250-66284269 | None:intergenic | 60.0% |
| GCAGATGCTTGAGGTGGAGG+AGG | + | chr4_2:66284259-66284278 | None:intergenic | 60.0% | |
| AGTACCCCTGGGACACTGGT+TGG | - | chr4_2:66287576-66287595 | Msa0616460:CDS | 60.0% | |
| AGAACGGTGGGCAGAAGCAG+AGG | - | chr4_2:66287805-66287824 | Msa0616460:CDS | 60.0% | |
| GGGCAGAAGCAGAGGAGCAA+TGG | - | chr4_2:66287813-66287832 | Msa0616460:CDS | 60.0% | |
| AAGTGGTTGCGTCCTCCACG+AGG | - | chr4_2:66287856-66287875 | Msa0616460:CDS | 60.0% | |
| CGTAGCAGCGTAGGTGCCCA+AGG | - | chr4_2:66285101-66285120 | Msa0616460:intron | 65.0% | |
| GGACGGTGCAGTGACAGGAG+AGG | + | chr4_2:66285357-66285376 | None:intergenic | 65.0% | |
| CCACTGGACGGTGCAGTGAC+AGG | + | chr4_2:66285362-66285381 | None:intergenic | 65.0% | |
| CCTGTCACTGCACCGTCCAG+TGG | - | chr4_2:66285359-66285378 | Msa0616460:intron | 65.0% | |
| TGAGGTCCCGGGTTCGAACC+CGG | - | chr4_2:66286411-66286430 | Msa0616460:intron | 65.0% | |
| TCGTGACCCGGGTTCGAACC+CGG | + | chr4_2:66286421-66286440 | None:intergenic | 65.0% | |
| GAGGTCCCGGGTTCGAACCC+GGG | - | chr4_2:66286412-66286431 | Msa0616460:intron | 70.0% | |
| CGTGACCCGGGTTCGAACCC+GGG | + | chr4_2:66286420-66286439 | None:intergenic | 70.0% | |
| CGAACCCGGGTCACGACGTC+CGG | - | chr4_2:66286425-66286444 | Msa0616460:intron | 70.0% | |
| AAGGCCGGACGTCGTGACCC+GGG | + | chr4_2:66286432-66286451 | None:intergenic | 70.0% | |
| CAAGGCCGGACGTCGTGACC+CGG | + | chr4_2:66286433-66286452 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66283653 | 66287996 | 66283653 | ID=Msa0616460;Name=Msa0616460 |
| chr4_2 | mRNA | 66283653 | 66287996 | 66283653 | ID=Msa0616460-mRNA-1;Parent=Msa0616460;Name=Msa0616460-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.66|1|1|3|0|290 |
| chr4_2 | exon | 66287492 | 66287996 | 66287492 | ID=Msa0616460-mRNA-1:exon:18860;Parent=Msa0616460-mRNA-1 |
| chr4_2 | exon | 66284809 | 66284912 | 66284809 | ID=Msa0616460-mRNA-1:exon:18859;Parent=Msa0616460-mRNA-1 |
| chr4_2 | exon | 66283653 | 66283916 | 66283653 | ID=Msa0616460-mRNA-1:exon:18858;Parent=Msa0616460-mRNA-1 |
| chr4_2 | CDS | 66287492 | 66287996 | 66287492 | ID=Msa0616460-mRNA-1:cds;Parent=Msa0616460-mRNA-1 |
| chr4_2 | CDS | 66284809 | 66284912 | 66284809 | ID=Msa0616460-mRNA-1:cds;Parent=Msa0616460-mRNA-1 |
| chr4_2 | CDS | 66283653 | 66283916 | 66283653 | ID=Msa0616460-mRNA-1:cds;Parent=Msa0616460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
