Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699790 | XP_039685192.1 | 98.225 | 169 | 3 | 0 | 1 | 169 | 1 | 169 | 5.01e-118 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699790 | sp|Q39263|ZFP4_ARATH | 51.471 | 136 | 38 | 6 | 57 | 168 | 78 | 209 | 4.10e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699790 | A0A396GPM5 | 98.225 | 169 | 3 | 0 | 1 | 169 | 1 | 169 | 2.39e-118 | 348 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0699790 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616460 | Msa0699790 | 0.928360 | 3.225675e-92 | -8.615850e-47 |
| Msa0655930 | Msa0699790 | 0.954146 | 5.700220e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699790 | MtrunA17_Chr8g0376021 | 98.225 | 169 | 3 | 0 | 1 | 169 | 1 | 169 | 4.61e-122 | 348 |
| Msa0699790 | MtrunA17_Chr1g0161901 | 52.885 | 208 | 58 | 8 | 1 | 169 | 2 | 208 | 1.18e-60 | 193 |
| Msa0699790 | MtrunA17_Chr3g0110091 | 49.324 | 148 | 71 | 3 | 21 | 168 | 47 | 190 | 5.32e-44 | 149 |
| Msa0699790 | MtrunA17_Chr5g0434121 | 49.367 | 158 | 72 | 5 | 17 | 168 | 39 | 194 | 4.03e-40 | 139 |
| Msa0699790 | MtrunA17_Chr2g0333741 | 66.667 | 81 | 21 | 2 | 59 | 133 | 78 | 158 | 6.93e-29 | 110 |
| Msa0699790 | MtrunA17_Chr1g0149811 | 38.194 | 144 | 63 | 3 | 15 | 132 | 37 | 180 | 3.49e-23 | 95.9 |
| Msa0699790 | MtrunA17_Chr4g0001081 | 40.426 | 141 | 66 | 4 | 2 | 136 | 6 | 134 | 1.37e-22 | 93.2 |
| Msa0699790 | MtrunA17_Chr1g0207691 | 45.192 | 104 | 49 | 3 | 46 | 149 | 51 | 146 | 3.34e-19 | 83.6 |
| Msa0699790 | MtrunA17_Chr3g0137111 | 50.562 | 89 | 26 | 4 | 61 | 132 | 71 | 158 | 8.05e-19 | 83.2 |
| Msa0699790 | MtrunA17_Chr4g0072571 | 65.517 | 58 | 18 | 1 | 62 | 119 | 45 | 100 | 1.43e-17 | 78.6 |
| Msa0699790 | MtrunA17_Chr4g0053691 | 47.368 | 76 | 26 | 2 | 57 | 132 | 62 | 123 | 5.79e-14 | 68.9 |
| Msa0699790 | MtrunA17_Chr3g0079221 | 50.794 | 63 | 31 | 0 | 227 | 289 | 5 | 67 | 1.96e-13 | 64.7 |
| Msa0699790 | MtrunA17_Chr7g0254221 | 58.000 | 50 | 19 | 1 | 51 | 98 | 20 | 69 | 4.54e-12 | 62.8 |
| Msa0699790 | MtrunA17_Chr7g0251581 | 68.421 | 38 | 12 | 0 | 57 | 94 | 34 | 71 | 8.66e-12 | 62.8 |
| Msa0699790 | MtrunA17_Chr3g0081131 | 36.641 | 131 | 73 | 5 | 62 | 186 | 98 | 224 | 6.83e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699790 | AT1G66140.1 | 51.471 | 136 | 38 | 6 | 57 | 168 | 78 | 209 | 4.17e-34 | 125 |
| Msa0699790 | AT1G80730.1 | 55.056 | 89 | 23 | 2 | 61 | 132 | 65 | 153 | 1.64e-24 | 99.0 |
| Msa0699790 | AT1G24625.1 | 47.107 | 121 | 43 | 5 | 59 | 173 | 54 | 159 | 3.51e-23 | 95.1 |
| Msa0699790 | AT5G25160.1 | 54.762 | 84 | 31 | 3 | 55 | 132 | 52 | 134 | 1.49e-21 | 91.3 |
| Msa0699790 | AT5G10970.1 | 41.611 | 149 | 67 | 7 | 3 | 132 | 28 | 175 | 1.62e-21 | 92.0 |
| Msa0699790 | AT5G57520.1 | 76.923 | 39 | 9 | 0 | 61 | 99 | 49 | 87 | 4.99e-16 | 73.9 |
| Msa0699790 | AT5G14010.1 | 72.222 | 36 | 10 | 0 | 62 | 97 | 36 | 71 | 5.63e-13 | 65.9 |
| Msa0699790 | AT5G01860.1 | 67.647 | 34 | 11 | 0 | 62 | 95 | 65 | 98 | 8.10e-11 | 60.8 |
Find 64 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGATAGAAACCATTT+TGG | 0.216847 | 4_4:-70573079 | Msa0699790:CDS |
| TTCGAGTGAGGCCGAGTTAA+TGG | 0.228364 | 4_4:-70573434 | Msa0699790:CDS |
| TTCGCAGCAGCTCTCATATC+TGG | 0.318459 | 4_4:+70573100 | None:intergenic |
| GCATGTTGAAGTTGTCTATA+GGG | 0.333306 | 4_4:-70569400 | Msa0699790:CDS |
| CTTGCATCTCTACCTCTTCA+TGG | 0.342785 | 4_4:-70573205 | Msa0699790:CDS |
| TCAGGTTCCAAGTTCAAGTT+TGG | 0.345240 | 4_4:+70573520 | None:intergenic |
| CGAAAACTAGCGATCCAAAA+TGG | 0.355731 | 4_4:+70573065 | None:intergenic |
| TGCAAGGCTTGTATACCTTT+CGG | 0.407124 | 4_4:+70573222 | None:intergenic |
| TGTCTACATAAGAGATGAAA+TGG | 0.420278 | 4_4:-70569211 | Msa0699790:CDS |
| GGCATGTTGAAGTTGTCTAT+AGG | 0.425631 | 4_4:-70569401 | Msa0699790:CDS |
| AGCTTCAATAAAGTAGGAAT+TGG | 0.428315 | 4_4:-70569234 | Msa0699790:CDS |
| TCGAGTGAGGCCGAGTTAAT+GGG | 0.432246 | 4_4:-70573433 | Msa0699790:CDS |
| GTCATCAGAACGCTCACAAA+AGG | 0.433204 | 4_4:-70573288 | Msa0699790:CDS |
| GGTCATAGGATCTAGATCTT+GGG | 0.441405 | 4_4:+70573480 | None:intergenic |
| GGGTCATAGGATCTAGATCT+TGG | 0.448749 | 4_4:+70573479 | None:intergenic |
| GGCTAAACGTGCAATGCGAA+TGG | 0.452909 | 4_4:-70573254 | Msa0699790:CDS |
| TTCTATAGCTCGCAAGCATT+AGG | 0.456033 | 4_4:-70573313 | Msa0699790:CDS |
| GATGACTCCAAACTTGAACT+TGG | 0.465674 | 4_4:-70573527 | Msa0699790:CDS |
| AGTGATGCTAGTAGTGAAGT+AGG | 0.485652 | 4_4:-70573406 | Msa0699790:CDS |
| GGCAGAAGCATAGGAGCAAT+GGG | 0.502263 | 4_4:-70569336 | Msa0699790:CDS |
| TAATTACAAGAGAATATCCT+TGG | 0.504702 | 4_4:+70573349 | None:intergenic |
| GGACGCAACCACTTCATTTG+AGG | 0.505288 | 4_4:+70569303 | None:intergenic |
| TCTAGGAATGCAAAGTTGAA+TGG | 0.511144 | 4_4:-70569422 | Msa0699790:intron |
| AGAACGGTGGGCAGAAGCAT+AGG | 0.512115 | 4_4:-70569345 | Msa0699790:CDS |
| AAGCCATACTTCCGGAATTG+AGG | 0.514925 | 4_4:+70570316 | None:intergenic |
| AGTGTCAAGTCAAGGGTCAT+AGG | 0.518887 | 4_4:+70573466 | None:intergenic |
| GAATAATGTTAATAGAAGAA+TGG | 0.528397 | 4_4:-70569377 | Msa0699790:CDS |
| TCTACAAGCTTCAATAAAGT+AGG | 0.530671 | 4_4:-70569240 | Msa0699790:CDS |
| TCTCTTGTAATTACTGCAAG+AGG | 0.530679 | 4_4:-70573339 | Msa0699790:CDS |
| GGGCAGAAGCATAGGAGCAA+TGG | 0.535350 | 4_4:-70569337 | Msa0699790:CDS |
| GCTAAACGTGCAATGCGAAT+GGG | 0.536618 | 4_4:-70573253 | Msa0699790:CDS |
| AGGAAGGAATCACTATGGAC+TGG | 0.542809 | 4_4:-70570408 | Msa0699790:CDS |
| TGGATAGAAGCTAGAACGGT+GGG | 0.545301 | 4_4:-70569357 | Msa0699790:CDS |
| TGAAATTGAGTGTCAAGTCA+AGG | 0.555713 | 4_4:+70573458 | None:intergenic |
| TTACCAGGAAGGAATCACTA+TGG | 0.558404 | 4_4:-70570413 | Msa0699790:intron |
| AAGCATAGGAGCAATGGGTA+TGG | 0.563873 | 4_4:-70569331 | Msa0699790:CDS |
| TCATCAGAACGCTCACAAAA+GGG | 0.564572 | 4_4:-70573287 | Msa0699790:CDS |
| TCAACACCAAGGGACCGAAA+AGG | 0.568839 | 4_4:+70573178 | None:intergenic |
| TTCGTGGAAGATGATGATGC+AGG | 0.588719 | 4_4:-70573046 | Msa0699790:intron |
| GAAATTGAGTGTCAAGTCAA+GGG | 0.590766 | 4_4:+70573459 | None:intergenic |
| GTCATAGGATCTAGATCTTG+GGG | 0.590838 | 4_4:+70573481 | None:intergenic |
| TGGTAAATCCTCAAATGAAG+TGG | 0.591816 | 4_4:-70569311 | Msa0699790:CDS |
| CATGTTGAAGTTGTCTATAG+GGG | 0.596490 | 4_4:-70569399 | Msa0699790:CDS |
| CTTCGCCATCGGTAACTCCA+AGG | 0.598331 | 4_4:-70573366 | Msa0699790:CDS |
| TGCAACCATCGTCAACAATG+AGG | 0.600965 | 4_4:-70573126 | Msa0699790:CDS |
| GCAACCATCGTCAACAATGA+GGG | 0.605847 | 4_4:-70573125 | Msa0699790:CDS |
| ACTCAATTTCAGTTCGAGTG+AGG | 0.611871 | 4_4:-70573446 | Msa0699790:CDS |
| TGAAGTTCATGCTTCGCCAT+CGG | 0.612721 | 4_4:-70573377 | Msa0699790:CDS |
| ATCACTTGAACCCATTAACT+CGG | 0.613671 | 4_4:+70573423 | None:intergenic |
| AGAATGGATAGAAGCTAGAA+CGG | 0.614590 | 4_4:-70569361 | Msa0699790:CDS |
| AGAACGCTCACAAAAGGGAG+AGG | 0.635123 | 4_4:-70573282 | Msa0699790:CDS |
| CAGAATGAGCTTCAACACCA+AGG | 0.638470 | 4_4:+70573167 | None:intergenic |
| ATGGATAGAAGCTAGAACGG+TGG | 0.638817 | 4_4:-70569358 | Msa0699790:CDS |
| CATGAAGAGGTAGAGATGCA+AGG | 0.640521 | 4_4:+70573206 | None:intergenic |
| AATATCCTTGGAGTTACCGA+TGG | 0.642699 | 4_4:+70573361 | None:intergenic |
| GGAAGGAATCACTATGGACT+GGG | 0.645819 | 4_4:-70570407 | Msa0699790:CDS |
| GAATGGGAATGTTCACCGAA+AGG | 0.647190 | 4_4:-70573237 | Msa0699790:CDS |
| CGAAAAGGCGAACCATGAAG+AGG | 0.651068 | 4_4:+70573193 | None:intergenic |
| AGAATGAGCTTCAACACCAA+GGG | 0.655962 | 4_4:+70573168 | None:intergenic |
| TATAGCTCGCAAGCATTAGG+CGG | 0.663928 | 4_4:-70573310 | Msa0699790:CDS |
| GGAGCCCTCATTGTTGACGA+TGG | 0.667173 | 4_4:+70573121 | None:intergenic |
| TCACAAAAGGGAGAGGACGA+TGG | 0.689083 | 4_4:-70573275 | Msa0699790:CDS |
| AAGTGGTTGCGTCCTCCACG+AGG | 0.692583 | 4_4:-70569294 | Msa0699790:CDS |
| TCGTTGGAGCTAAAACAGTG+TGG | 0.704637 | 4_4:-70569182 | Msa0699790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAAATAATAATTTTTA+TGG | + | chr4_4:70572725-70572744 | None:intergenic | 0.0% |
| !!! | AAATTATTATTTTAATAAAA+AGG | - | chr4_4:70572728-70572747 | Msa0699790:intron | 0.0% |
| !!! | TTATTATTATTTTTTATGAG+GGG | - | chr4_4:70570067-70570086 | Msa0699790:intron | 10.0% |
| !! | ATTTAATAATTGAAAAGAAA+AGG | - | chr4_4:70570940-70570959 | Msa0699790:intron | 10.0% |
| !!! | TAATACAATATTTTATTTTC+AGG | + | chr4_4:70573069-70573088 | None:intergenic | 10.0% |
| !!! | GATTTGATTTAAATTTATTT+GGG | - | chr4_4:70573097-70573116 | Msa0699790:CDS | 10.0% |
| !! | AAGGTGAAATTAAAATAAAA+AGG | + | chr4_4:70570247-70570266 | None:intergenic | 15.0% |
| !! | ATTAGAAGAAAACATTAATA+AGG | + | chr4_4:70570266-70570285 | None:intergenic | 15.0% |
| !!! | AAAAAAGATCTAATTCTTTT+GGG | + | chr4_4:70572138-70572157 | None:intergenic | 15.0% |
| !!! | AAAAAAAGATCTAATTCTTT+TGG | + | chr4_4:70572139-70572158 | None:intergenic | 15.0% |
| !!! | TTTTAATAATAGTACCTAAT+AGG | - | chr4_4:70572604-70572623 | Msa0699790:intron | 15.0% |
| !! | TGTGGAAAAAAAAAAATTAA+GGG | + | chr4_4:70572809-70572828 | None:intergenic | 15.0% |
| !! | TTGTGGAAAAAAAAAAATTA+AGG | + | chr4_4:70572810-70572829 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTTTTCCACAA+TGG | - | chr4_4:70572810-70572829 | Msa0699790:intron | 15.0% |
| !!! | AATTTTTTTTTTTCCACAAT+GGG | - | chr4_4:70572811-70572830 | Msa0699790:intron | 15.0% |
| !!! | CGATTTGATTTAAATTTATT+TGG | - | chr4_4:70573096-70573115 | Msa0699790:CDS | 15.0% |
| !! | TTAAAAAATATGTCAATTCA+AGG | - | chr4_4:70573164-70573183 | Msa0699790:CDS | 15.0% |
| !!! | AAATTTGATAGAAACCATTT+TGG | - | chr4_4:70569626-70569645 | Msa0699790:intron | 20.0% |
| !! | ATCTTAAGATTATTTGTCTT+TGG | - | chr4_4:70570132-70570151 | Msa0699790:intron | 20.0% |
| !!! | CTATTTTGCTAAACTTAATA+GGG | + | chr4_4:70570331-70570350 | None:intergenic | 20.0% |
| !! | CTATTAAGTTTAGCAAAATA+GGG | - | chr4_4:70570330-70570349 | Msa0699790:CDS | 20.0% |
| !!! | TTTATTTTTTTCTCTCTATC+AGG | + | chr4_4:70570802-70570821 | None:intergenic | 20.0% |
| !! | AATTAATAAACAAAGATGAG+TGG | + | chr4_4:70570916-70570935 | None:intergenic | 20.0% |
| !! | ATAATTGAAAAGAAAAGGAA+CGG | - | chr4_4:70570945-70570964 | Msa0699790:intron | 20.0% |
| !! | ATATATATTTATAGCCTACA+GGG | - | chr4_4:70571665-70571684 | Msa0699790:intron | 20.0% |
| !! | AAATGCAATGATATTTGTTT+GGG | + | chr4_4:70571830-70571849 | None:intergenic | 20.0% |
| !! | AAAATGCAATGATATTTGTT+TGG | + | chr4_4:70571831-70571850 | None:intergenic | 20.0% |
| !!! | ACAAATATCATTGCATTTTT+TGG | - | chr4_4:70571832-70571851 | Msa0699790:intron | 20.0% |
| !!! | ATTTTAATAAAAAGGTGATG+TGG | - | chr4_4:70572736-70572755 | Msa0699790:intron | 20.0% |
| !!! | TTTTAATAAAAAGGTGATGT+GGG | - | chr4_4:70572737-70572756 | Msa0699790:intron | 20.0% |
| !! | CATTGTTCAATGTATTATTA+TGG | + | chr4_4:70572910-70572929 | None:intergenic | 20.0% |
| !!! | AAGTTCTTTTTCATATTTTG+TGG | - | chr4_4:70573187-70573206 | Msa0699790:CDS | 20.0% |
| !! | GAATAATGTTAATAGAAGAA+TGG | - | chr4_4:70573328-70573347 | Msa0699790:CDS | 20.0% |
| ! | TAATTACAAGAGAATATCCT+TGG | + | chr4_4:70569359-70569378 | None:intergenic | 25.0% |
| ! | TAAAAAGGTAAAATCGCTAT+TGG | + | chr4_4:70570232-70570251 | None:intergenic | 25.0% |
| !! | CCTATTTTGCTAAACTTAAT+AGG | + | chr4_4:70570332-70570351 | None:intergenic | 25.0% |
| ! | CCTATTAAGTTTAGCAAAAT+AGG | - | chr4_4:70570329-70570348 | Msa0699790:CDS | 25.0% |
| ! | AGAGAGAAAAAAATAAAGAG+TGG | - | chr4_4:70570805-70570824 | Msa0699790:intron | 25.0% |
| ! | AAGAGAAATGCATGAAAAAT+AGG | - | chr4_4:70571102-70571121 | Msa0699790:intron | 25.0% |
| ! | AGAGAAATGCATGAAAAATA+GGG | - | chr4_4:70571103-70571122 | Msa0699790:intron | 25.0% |
| ! | ATGAAAAATAGGGTCTTAAA+TGG | - | chr4_4:70571113-70571132 | Msa0699790:intron | 25.0% |
| ! | TGAAAAATAGGGTCTTAAAT+GGG | - | chr4_4:70571114-70571133 | Msa0699790:intron | 25.0% |
| !!! | GTTTTTTGGGTAATTATACT+TGG | + | chr4_4:70571160-70571179 | None:intergenic | 25.0% |
| !!! | ACCTACTATTAGTGTTTTTT+GGG | + | chr4_4:70571173-70571192 | None:intergenic | 25.0% |
| !!! | AACCTACTATTAGTGTTTTT+TGG | + | chr4_4:70571174-70571193 | None:intergenic | 25.0% |
| ! | AAAAACACTAATAGTAGGTT+TGG | - | chr4_4:70571174-70571193 | Msa0699790:intron | 25.0% |
| !!! | GTTAGGAAATTTTTTTACCA+TGG | - | chr4_4:70571293-70571312 | Msa0699790:intron | 25.0% |
| !! | ATAATAAGTTTGTTCTTGTC+TGG | + | chr4_4:70571571-70571590 | None:intergenic | 25.0% |
| ! | CATATATATTTATAGCCTAC+AGG | - | chr4_4:70571664-70571683 | Msa0699790:intron | 25.0% |
| ! | TTAATATTAAATGTCCCTGT+AGG | + | chr4_4:70571682-70571701 | None:intergenic | 25.0% |
| !! | ATATGGCAATTTTCTTCTTT+TGG | + | chr4_4:70571779-70571798 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTCTTAGATGAAG+TGG | - | chr4_4:70571918-70571937 | Msa0699790:intron | 25.0% |
| ! | ATTATTCAGAATTAGATCTG+TGG | - | chr4_4:70572164-70572183 | Msa0699790:intron | 25.0% |
| ! | TTATTCAGAATTAGATCTGT+GGG | - | chr4_4:70572165-70572184 | Msa0699790:intron | 25.0% |
| !!! | GGATTTTTTTATGAAATAGG+AGG | + | chr4_4:70572356-70572375 | None:intergenic | 25.0% |
| !!! | CAGGGATTTTTTTATGAAAT+AGG | + | chr4_4:70572359-70572378 | None:intergenic | 25.0% |
| ! | AATTGAGGTAAAAAAAGTCA+GGG | + | chr4_4:70572377-70572396 | None:intergenic | 25.0% |
| ! | TCTCAAAGTAGAAAATCATA+TGG | - | chr4_4:70572431-70572450 | Msa0699790:intron | 25.0% |
| ! | CTCAAAGTAGAAAATCATAT+GGG | - | chr4_4:70572432-70572451 | Msa0699790:intron | 25.0% |
| !! | TTTTTCCTTAAAAAGAAACG+TGG | - | chr4_4:70572474-70572493 | Msa0699790:intron | 25.0% |
| ! | TTAAGACCTCATTCTTAAAT+GGG | + | chr4_4:70572763-70572782 | None:intergenic | 25.0% |
| ! | ATTAAGACCTCATTCTTAAA+TGG | + | chr4_4:70572764-70572783 | None:intergenic | 25.0% |
| ! | AAACTCGAATTTGAAGTTTG+AGG | + | chr4_4:70569746-70569765 | None:intergenic | 30.0% |
| !!! | AAATTCGAGTTTTGTTCCAA+TGG | - | chr4_4:70569754-70569773 | Msa0699790:intron | 30.0% |
| !! | AAACCATTTTTATGAGGTGT+CGG | - | chr4_4:70569857-70569876 | Msa0699790:intron | 30.0% |
| ! | ATTTTACGACTGTCCATAAA+GGG | + | chr4_4:70569931-70569950 | None:intergenic | 30.0% |
| ! | CCAACTCATTATTTTCTCAA+GGG | + | chr4_4:70569986-70570005 | None:intergenic | 30.0% |
| ! | ACCAACTCATTATTTTCTCA+AGG | + | chr4_4:70569987-70570006 | None:intergenic | 30.0% |
| ! | TTGAGAAAATAATGAGTTGG+TGG | - | chr4_4:70569986-70570005 | Msa0699790:intron | 30.0% |
| ! | AATGAGTGATTGAGCAATTT+TGG | + | chr4_4:70570048-70570067 | None:intergenic | 30.0% |
| AGATAAATGATACAAGCACT+TGG | + | chr4_4:70570116-70570135 | None:intergenic | 30.0% | |
| TGTCTAAATAAATGCATCTC+TGG | - | chr4_4:70570370-70570389 | Msa0699790:CDS | 30.0% | |
| GAACTCAAACCAAACAAAAT+CGG | + | chr4_4:70570435-70570454 | None:intergenic | 30.0% | |
| TCTATTAAACAGTCTTTCTG+AGG | + | chr4_4:70570482-70570501 | None:intergenic | 30.0% | |
| ! | ATTGGCTAAAGACTCTTTTA+AGG | - | chr4_4:70570591-70570610 | Msa0699790:intron | 30.0% |
| !!! | AGACTCTTTTAAGGTTTGAA+AGG | - | chr4_4:70570600-70570619 | Msa0699790:intron | 30.0% |
| !!! | GACTCTTTTAAGGTTTGAAA+GGG | - | chr4_4:70570601-70570620 | Msa0699790:intron | 30.0% |
| ! | TTTCTCATTTTCATGTCCTT+GGG | + | chr4_4:70570643-70570662 | None:intergenic | 30.0% |
| ! | TTTTCTCATTTTCATGTCCT+TGG | + | chr4_4:70570644-70570663 | None:intergenic | 30.0% |
| AATGAGAAAACACAGATATG+TGG | - | chr4_4:70570654-70570673 | Msa0699790:intron | 30.0% | |
| TGTACACTACTGCATTAAAA+CGG | - | chr4_4:70570715-70570734 | Msa0699790:intron | 30.0% | |
| GATATAAGGACACAAAAAGA+TGG | - | chr4_4:70570752-70570771 | Msa0699790:intron | 30.0% | |
| !! | TATGTTGGTAATGTGATAGA+AGG | - | chr4_4:70570846-70570865 | Msa0699790:intron | 30.0% |
| !! | ATGTTGGTAATGTGATAGAA+GGG | - | chr4_4:70570847-70570866 | Msa0699790:intron | 30.0% |
| ACCCAAAAAACACTAATAGT+AGG | - | chr4_4:70571169-70571188 | Msa0699790:intron | 30.0% | |
| ! | AAAAAAAAACGCGTCCTTTT+CGG | + | chr4_4:70571898-70571917 | None:intergenic | 30.0% |
| GAATTGAGGTAAAAAAAGTC+AGG | + | chr4_4:70572378-70572397 | None:intergenic | 30.0% | |
| !!! | GACTTTTTTTACCTCAATTC+CGG | - | chr4_4:70572378-70572397 | Msa0699790:intron | 30.0% |
| TCATATGGGTTTGAATTTCA+AGG | - | chr4_4:70572446-70572465 | Msa0699790:intron | 30.0% | |
| !! | TCATCTTTGAGGTCTTAAAT+GGG | - | chr4_4:70572550-70572569 | Msa0699790:intron | 30.0% |
| CTCTAACAAAAGGTCTAATT+GGG | - | chr4_4:70572646-70572665 | Msa0699790:intron | 30.0% | |
| AAATGTTAACTAGTACTCCT+GGG | - | chr4_4:70573120-70573139 | Msa0699790:CDS | 30.0% | |
| ATGCATAAATATCGCAATCT+AGG | - | chr4_4:70573266-70573285 | Msa0699790:CDS | 30.0% | |
| ! | TTACACTTTAAAAAACCTCG+TGG | + | chr4_4:70573429-70573448 | None:intergenic | 30.0% |
| TCTACAAGCTTCAATAAAGT+AGG | - | chr4_4:70573465-70573484 | Msa0699790:CDS | 30.0% | |
| AGCTTCAATAAAGTAGGAAT+TGG | - | chr4_4:70573471-70573490 | Msa0699790:CDS | 30.0% | |
| TGTCTACATAAGAGATGAAA+TGG | - | chr4_4:70573494-70573513 | Msa0699790:CDS | 30.0% | |
| GAAATTGAGTGTCAAGTCAA+GGG | + | chr4_4:70569249-70569268 | None:intergenic | 35.0% | |
| TGAAATTGAGTGTCAAGTCA+AGG | + | chr4_4:70569250-70569269 | None:intergenic | 35.0% | |
| ATCACTTGAACCCATTAACT+CGG | + | chr4_4:70569285-70569304 | None:intergenic | 35.0% | |
| TCTCTTGTAATTACTGCAAG+AGG | - | chr4_4:70569366-70569385 | Msa0699790:CDS | 35.0% | |
| CTATATTAACACTTCCTCCT+TGG | + | chr4_4:70569718-70569737 | None:intergenic | 35.0% | |
| !! | CAAGGAGGAAGTGTTAATAT+AGG | - | chr4_4:70569716-70569735 | Msa0699790:intron | 35.0% |
| TATAGCTTCAGTGTAAGATC+AGG | + | chr4_4:70569809-70569828 | None:intergenic | 35.0% | |
| AGTTGAGAGATGATACAAAC+TGG | - | chr4_4:70569831-70569850 | Msa0699790:intron | 35.0% | |
| GTTGAGAGATGATACAAACT+GGG | - | chr4_4:70569832-70569851 | Msa0699790:intron | 35.0% | |
| TTGAGAGATGATACAAACTG+GGG | - | chr4_4:70569833-70569852 | Msa0699790:intron | 35.0% | |
| !! | TGGGGTAAACCATTTTTATG+AGG | - | chr4_4:70569851-70569870 | Msa0699790:intron | 35.0% |
| ACAGAGTTCAAATCCCTTTA+TGG | - | chr4_4:70569915-70569934 | Msa0699790:intron | 35.0% | |
| ! | CATTTTACGACTGTCCATAA+AGG | + | chr4_4:70569932-70569951 | None:intergenic | 35.0% |
| CTTTATGGACAGTCGTAAAA+TGG | - | chr4_4:70569930-70569949 | Msa0699790:intron | 35.0% | |
| ACAGTCGTAAAATGGTCAAT+AGG | - | chr4_4:70569938-70569957 | Msa0699790:intron | 35.0% | |
| CCCTTGAGAAAATAATGAGT+TGG | - | chr4_4:70569983-70570002 | Msa0699790:intron | 35.0% | |
| ACAGCAATCATCAACAATGA+TGG | + | chr4_4:70570300-70570319 | None:intergenic | 35.0% | |
| ATATATAGTACCGTGAGATG+TGG | - | chr4_4:70570398-70570417 | Msa0699790:CDS | 35.0% | |
| !! | TAAACAGTCTTTCTGAGGTA+AGG | + | chr4_4:70570477-70570496 | None:intergenic | 35.0% |
| AGAGTCTTTAGCCAATATTG+TGG | + | chr4_4:70570587-70570606 | None:intergenic | 35.0% | |
| CAGTAGTGTACATAGATTGA+TGG | + | chr4_4:70570707-70570726 | None:intergenic | 35.0% | |
| AAGGAATGACAGTGGATATA+AGG | - | chr4_4:70570738-70570757 | Msa0699790:intron | 35.0% | |
| ! | TTTTCTCTCTATCAGGTGTA+TGG | + | chr4_4:70570795-70570814 | None:intergenic | 35.0% |
| ATCTAATAGCGGTGATATGT+TGG | - | chr4_4:70570831-70570850 | Msa0699790:intron | 35.0% | |
| ATAAACAAAGATGAGTGGAC+TGG | + | chr4_4:70570911-70570930 | None:intergenic | 35.0% | |
| ! | CCAATGAGGTTTTTAATGGA+GGG | + | chr4_4:70570990-70571009 | None:intergenic | 35.0% |
| ! | TCCAATGAGGTTTTTAATGG+AGG | + | chr4_4:70570991-70571010 | None:intergenic | 35.0% |
| ! | CTCTCCAATGAGGTTTTTAA+TGG | + | chr4_4:70570994-70571013 | None:intergenic | 35.0% |
| ! | TCTCTCTAGTGTTTCTATCA+CGG | + | chr4_4:70571026-70571045 | None:intergenic | 35.0% |
| TAGGTTTGGATACATGTTTC+AGG | - | chr4_4:70571188-70571207 | Msa0699790:intron | 35.0% | |
| !! | CTTTTGAGTAATCGTGTGTT+AGG | - | chr4_4:70571276-70571295 | Msa0699790:intron | 35.0% |
| TTAGTACTCGTTTGATTCCA+TGG | + | chr4_4:70571313-70571332 | None:intergenic | 35.0% | |
| TGAATAATGCATACCATCCA+TGG | - | chr4_4:70571384-70571403 | Msa0699790:intron | 35.0% | |
| !! | AAGTTTTATCGCTAGGTTCT+TGG | + | chr4_4:70571416-70571435 | None:intergenic | 35.0% |
| !! | TGTGTGTAAGTTTTATCGCT+AGG | + | chr4_4:70571423-70571442 | None:intergenic | 35.0% |
| TTACATGTTAGAACTCTCAC+TGG | - | chr4_4:70571499-70571518 | Msa0699790:intron | 35.0% | |
| ATTTACTTTCACGGGAGATA+TGG | + | chr4_4:70571796-70571815 | None:intergenic | 35.0% | |
| GCAATGATATTTGTTTGGGA+AGG | + | chr4_4:70571826-70571845 | None:intergenic | 35.0% | |
| AATTTCGGCATTTGTCAGTT+GGG | - | chr4_4:70572016-70572035 | Msa0699790:intron | 35.0% | |
| !!! | ACGCGTTTTAATTGGGTAAT+GGG | - | chr4_4:70572062-70572081 | Msa0699790:intron | 35.0% |
| !! | TAATTGGGTAATGGGTGTAT+CGG | - | chr4_4:70572070-70572089 | Msa0699790:intron | 35.0% |
| ! | TTATTTCAATGCTGCTTACC+AGG | - | chr4_4:70572277-70572296 | Msa0699790:intron | 35.0% |
| TGGGTTTGAATTTCAAGGAT+TGG | - | chr4_4:70572451-70572470 | Msa0699790:intron | 35.0% | |
| TTCCTTAAAAAGAAACGTGG+CGG | - | chr4_4:70572477-70572496 | Msa0699790:intron | 35.0% | |
| !! | CTCATCTTTGAGGTCTTAAA+TGG | - | chr4_4:70572549-70572568 | Msa0699790:intron | 35.0% |
| ! | CCAATTAGACCTTTTGTTAG+AGG | + | chr4_4:70572648-70572667 | None:intergenic | 35.0% |
| CCTCTAACAAAAGGTCTAAT+TGG | - | chr4_4:70572645-70572664 | Msa0699790:intron | 35.0% | |
| ! | TTTAAGACCTGGTACCTAAT+AGG | + | chr4_4:70572841-70572860 | None:intergenic | 35.0% |
| ! | GAGTCTAAACATTTAAGACC+TGG | + | chr4_4:70572852-70572871 | None:intergenic | 35.0% |
| ! | TTGAACAATGAACTTGCTTC+TGG | - | chr4_4:70572920-70572939 | Msa0699790:intron | 35.0% |
| GAAATGTTAACTAGTACTCC+TGG | - | chr4_4:70573119-70573138 | Msa0699790:CDS | 35.0% | |
| AATGTTAACTAGTACTCCTG+GGG | - | chr4_4:70573121-70573140 | Msa0699790:CDS | 35.0% | |
| TCTAGGAATGCAAAGTTGAA+TGG | - | chr4_4:70573283-70573302 | Msa0699790:CDS | 35.0% | |
| GCATGTTGAAGTTGTCTATA+GGG | - | chr4_4:70573305-70573324 | Msa0699790:CDS | 35.0% | |
| CATGTTGAAGTTGTCTATAG+GGG | - | chr4_4:70573306-70573325 | Msa0699790:CDS | 35.0% | |
| AGAATGGATAGAAGCTAGAA+CGG | - | chr4_4:70573344-70573363 | Msa0699790:CDS | 35.0% | |
| TGGTAAATCCTCAAATGAAG+TGG | - | chr4_4:70573394-70573413 | Msa0699790:CDS | 35.0% | |
| ! | GATGAAATGGAGTTTTTCGT+TGG | - | chr4_4:70573507-70573526 | Msa0699790:CDS | 35.0% |
| GATGACTCCAAACTTGAACT+TGG | - | chr4_4:70569178-70569197 | Msa0699790:CDS | 40.0% | |
| ! | TCAGGTTCCAAGTTCAAGTT+TGG | + | chr4_4:70569188-70569207 | None:intergenic | 40.0% |
| GTCATAGGATCTAGATCTTG+GGG | + | chr4_4:70569227-70569246 | None:intergenic | 40.0% | |
| GGTCATAGGATCTAGATCTT+GGG | + | chr4_4:70569228-70569247 | None:intergenic | 40.0% | |
| ACTCAATTTCAGTTCGAGTG+AGG | - | chr4_4:70569259-70569278 | Msa0699790:CDS | 40.0% | |
| AGTGATGCTAGTAGTGAAGT+AGG | - | chr4_4:70569299-70569318 | Msa0699790:CDS | 40.0% | |
| AATATCCTTGGAGTTACCGA+TGG | + | chr4_4:70569347-70569366 | None:intergenic | 40.0% | |
| TTCTATAGCTCGCAAGCATT+AGG | - | chr4_4:70569392-70569411 | Msa0699790:CDS | 40.0% | |
| TCATCAGAACGCTCACAAAA+GGG | - | chr4_4:70569418-70569437 | Msa0699790:CDS | 40.0% | |
| TGCAAGGCTTGTATACCTTT+CGG | + | chr4_4:70569486-70569505 | None:intergenic | 40.0% | |
| AGAATGAGCTTCAACACCAA+GGG | + | chr4_4:70569540-70569559 | None:intergenic | 40.0% | |
| CGAAAACTAGCGATCCAAAA+TGG | + | chr4_4:70569643-70569662 | None:intergenic | 40.0% | |
| !!! | TTTTGGATCGCTAGTTTTCG+TGG | - | chr4_4:70569643-70569662 | Msa0699790:intron | 40.0% |
| !! | ATGATGATGCAGGTAGCTTT+TGG | - | chr4_4:70569669-70569688 | Msa0699790:intron | 40.0% |
| GAACCGACACCTCATAAAAA+TGG | + | chr4_4:70569863-70569882 | None:intergenic | 40.0% | |
| GAGCTTGACTATGTAACTTC+AGG | - | chr4_4:70569892-70569911 | Msa0699790:intron | 40.0% | |
| AGGGGTTTATGACTTTGTGA+AGG | - | chr4_4:70570085-70570104 | Msa0699790:intron | 40.0% | |
| !! | CAAAGTGGACCGATTTTGTT+TGG | - | chr4_4:70570423-70570442 | Msa0699790:intron | 40.0% |
| ! | GACAAGAATCTAGAACCACT+GGG | + | chr4_4:70570558-70570577 | None:intergenic | 40.0% |
| !! | TGGTTCTAGATTCTTGTCCA+TGG | - | chr4_4:70570560-70570579 | Msa0699790:intron | 40.0% |
| TTGTCCATGGACCACAATAT+TGG | - | chr4_4:70570573-70570592 | Msa0699790:intron | 40.0% | |
| TTAGCCAATATTGTGGTCCA+TGG | + | chr4_4:70570580-70570599 | None:intergenic | 40.0% | |
| CACTACTGCATTAAAACGGA+AGG | - | chr4_4:70570719-70570738 | Msa0699790:intron | 40.0% | |
| TAAAACGGAAGGAATGACAG+TGG | - | chr4_4:70570730-70570749 | Msa0699790:intron | 40.0% | |
| AAGAGTGGTCGATCTAATAG+CGG | - | chr4_4:70570820-70570839 | Msa0699790:intron | 40.0% | |
| !! | TTGGTAATGTGATAGAAGGG+AGG | - | chr4_4:70570850-70570869 | Msa0699790:intron | 40.0% |
| CCCTCCATTAAAAACCTCAT+TGG | - | chr4_4:70570987-70571006 | Msa0699790:intron | 40.0% | |
| CACACGATTACTCAAAAGCT+AGG | + | chr4_4:70571274-70571293 | None:intergenic | 40.0% | |
| TTCTTGGAACATTCCATGGA+TGG | + | chr4_4:70571400-70571419 | None:intergenic | 40.0% | |
| TAGGTTCTTGGAACATTCCA+TGG | + | chr4_4:70571404-70571423 | None:intergenic | 40.0% | |
| TCTGGTAAGTGTAGCTCATA+TGG | + | chr4_4:70571553-70571572 | None:intergenic | 40.0% | |
| GCTTCGCTATTTACTTTCAC+GGG | + | chr4_4:70571804-70571823 | None:intergenic | 40.0% | |
| GGCTTCGCTATTTACTTTCA+CGG | + | chr4_4:70571805-70571824 | None:intergenic | 40.0% | |
| AAGGAGGAGAGAGAAAATTC+AGG | + | chr4_4:70571870-70571889 | None:intergenic | 40.0% | |
| TAAACTCACACACAACTGTG+AGG | - | chr4_4:70571955-70571974 | Msa0699790:intron | 40.0% | |
| TGACAAATGCCGAAATTGCA+AGG | + | chr4_4:70572013-70572032 | None:intergenic | 40.0% | |
| CAATTTCGGCATTTGTCAGT+TGG | - | chr4_4:70572015-70572034 | Msa0699790:intron | 40.0% | |
| !! | AGGAAAGGACGCGTTTTAAT+TGG | - | chr4_4:70572054-70572073 | Msa0699790:intron | 40.0% |
| !!! | GGAAAGGACGCGTTTTAATT+GGG | - | chr4_4:70572055-70572074 | Msa0699790:intron | 40.0% |
| !!! | GACGCGTTTTAATTGGGTAA+TGG | - | chr4_4:70572061-70572080 | Msa0699790:intron | 40.0% |
| !! | AATTGGGTAATGGGTGTATC+GGG | - | chr4_4:70572071-70572090 | Msa0699790:intron | 40.0% |
| TTACCAGGAAGGAATCACTA+TGG | - | chr4_4:70572292-70572311 | Msa0699790:intron | 40.0% | |
| TTACCTCAATTCCGGAAGTA+TGG | - | chr4_4:70572386-70572405 | Msa0699790:intron | 40.0% | |
| !! | AATTCCGGAAGTATGGCTTT+TGG | - | chr4_4:70572393-70572412 | Msa0699790:intron | 40.0% |
| !! | ATTCCGGAAGTATGGCTTTT+GGG | - | chr4_4:70572394-70572413 | Msa0699790:intron | 40.0% |
| AATGGAGACTCTCATCTTTG+AGG | - | chr4_4:70572539-70572558 | Msa0699790:intron | 40.0% | |
| ! | TTTTGTTAGAGGATCTCCAG+TGG | + | chr4_4:70572637-70572656 | None:intergenic | 40.0% |
| ACTGGAGATCCTCTAACAAA+AGG | - | chr4_4:70572636-70572655 | Msa0699790:intron | 40.0% | |
| ATGTTTAGACTCTCCCATTG+TGG | - | chr4_4:70572860-70572879 | Msa0699790:intron | 40.0% | |
| GGCATGTTGAAGTTGTCTAT+AGG | - | chr4_4:70573304-70573323 | Msa0699790:CDS | 40.0% | |
| ! | CACTTTAAAAAACCTCGTGG+AGG | + | chr4_4:70573426-70573445 | None:intergenic | 40.0% |
| !! | GGTGCTTCTGACTGATTTTC+AGG | + | chr4_4:70569206-70569225 | None:intergenic | 45.0% |
| GGGTCATAGGATCTAGATCT+TGG | + | chr4_4:70569229-70569248 | None:intergenic | 45.0% | |
| AGTGTCAAGTCAAGGGTCAT+AGG | + | chr4_4:70569242-70569261 | None:intergenic | 45.0% | |
| TGAAGTTCATGCTTCGCCAT+CGG | - | chr4_4:70569328-70569347 | Msa0699790:CDS | 45.0% | |
| TATAGCTCGCAAGCATTAGG+CGG | - | chr4_4:70569395-70569414 | Msa0699790:CDS | 45.0% | |
| GTCATCAGAACGCTCACAAA+AGG | - | chr4_4:70569417-70569436 | Msa0699790:CDS | 45.0% | |
| GCTAAACGTGCAATGCGAAT+GGG | - | chr4_4:70569452-70569471 | Msa0699790:intron | 45.0% | |
| GAATGGGAATGTTCACCGAA+AGG | - | chr4_4:70569468-70569487 | Msa0699790:intron | 45.0% | |
| CATGAAGAGGTAGAGATGCA+AGG | + | chr4_4:70569502-70569521 | None:intergenic | 45.0% | |
| CTTGCATCTCTACCTCTTCA+TGG | - | chr4_4:70569500-70569519 | Msa0699790:intron | 45.0% | |
| ! | CTCTTCATGGTTCGCCTTTT+CGG | - | chr4_4:70569513-70569532 | Msa0699790:intron | 45.0% |
| CAGAATGAGCTTCAACACCA+AGG | + | chr4_4:70569541-70569560 | None:intergenic | 45.0% | |
| TGCAACCATCGTCAACAATG+AGG | - | chr4_4:70569579-70569598 | Msa0699790:intron | 45.0% | |
| GCAACCATCGTCAACAATGA+GGG | - | chr4_4:70569580-70569599 | Msa0699790:intron | 45.0% | |
| ! | TTCGTGGAAGATGATGATGC+AGG | - | chr4_4:70569659-70569678 | Msa0699790:intron | 45.0% |
| ! | TCCACCTGTCTAAAACTTCC+GGG | + | chr4_4:70569695-70569714 | None:intergenic | 45.0% |
| ! | GTCCACCTGTCTAAAACTTC+CGG | + | chr4_4:70569696-70569715 | None:intergenic | 45.0% |
| !!! | AGTTTTAGACAGGTGGACCA+AGG | - | chr4_4:70569698-70569717 | Msa0699790:intron | 45.0% |
| !! | TTATGAGGTGTCGGTTCAAG+TGG | - | chr4_4:70569866-70569885 | Msa0699790:intron | 45.0% |
| !! | TATGAGGTGTCGGTTCAAGT+GGG | - | chr4_4:70569867-70569886 | Msa0699790:intron | 45.0% |
| !! | GAGTTGGTGGTTGTAAGAAG+TGG | - | chr4_4:70569999-70570018 | Msa0699790:intron | 45.0% |
| CCACTTTGAACCACATCTCA+CGG | + | chr4_4:70570411-70570430 | None:intergenic | 45.0% | |
| AGAACCACTGGGACTTTACT+TGG | + | chr4_4:70570547-70570566 | None:intergenic | 45.0% | |
| ! | GGACAAGAATCTAGAACCAC+TGG | + | chr4_4:70570559-70570578 | None:intergenic | 45.0% |
| GGAACGGCAAAGATTAACAC+TGG | - | chr4_4:70570961-70570980 | Msa0699790:intron | 45.0% | |
| AACCTCATTGGAGAGAATCC+TGG | - | chr4_4:70570999-70571018 | Msa0699790:intron | 45.0% | |
| ! | TAGTGTTTCTATCACGGACC+AGG | + | chr4_4:70571020-70571039 | None:intergenic | 45.0% |
| GAGAGTGATCGATCTAGTAG+AGG | - | chr4_4:70571056-70571075 | Msa0699790:intron | 45.0% | |
| GAGGAGAGAGAAAATTCAGG+AGG | + | chr4_4:70571867-70571886 | None:intergenic | 45.0% | |
| CTCCTCCTTGTATTCCGAAA+AGG | - | chr4_4:70571881-70571900 | Msa0699790:intron | 45.0% | |
| ! | GTCCTTTTCGGAATACAAGG+AGG | + | chr4_4:70571886-70571905 | None:intergenic | 45.0% |
| AAATGCCGAAATTGCAAGGC+CGG | + | chr4_4:70572009-70572028 | None:intergenic | 45.0% | |
| CTAGGACTTCTAGACAGGAA+AGG | - | chr4_4:70572039-70572058 | Msa0699790:intron | 45.0% | |
| TGGGTGTATCGGGATGATTT+CGG | - | chr4_4:70572081-70572100 | Msa0699790:intron | 45.0% | |
| TCTCGTCGCGTTATATAGCA+TGG | - | chr4_4:70572110-70572129 | Msa0699790:intron | 45.0% | |
| ! | TTCAATGCTGCTTACCAGGA+AGG | - | chr4_4:70572281-70572300 | Msa0699790:intron | 45.0% |
| AGTCCATAGTGATTCCTTCC+TGG | + | chr4_4:70572298-70572317 | None:intergenic | 45.0% | |
| AGGAAGGAATCACTATGGAC+TGG | - | chr4_4:70572297-70572316 | Msa0699790:intron | 45.0% | |
| GGAAGGAATCACTATGGACT+GGG | - | chr4_4:70572298-70572317 | Msa0699790:intron | 45.0% | |
| !!! | CACTATGGACTGGGTCTTTT+AGG | - | chr4_4:70572307-70572326 | Msa0699790:intron | 45.0% |
| !! | ACTGGGTCTTTTAGGTGCAA+AGG | - | chr4_4:70572315-70572334 | Msa0699790:intron | 45.0% |
| !! | CTGGGTCTTTTAGGTGCAAA+GGG | - | chr4_4:70572316-70572335 | Msa0699790:intron | 45.0% |
| AAGCCATACTTCCGGAATTG+AGG | + | chr4_4:70572392-70572411 | None:intergenic | 45.0% | |
| !! | TTCCGGAAGTATGGCTTTTG+GGG | - | chr4_4:70572395-70572414 | Msa0699790:intron | 45.0% |
| ! | CACCGCCACGTTTCTTTTTA+AGG | + | chr4_4:70572482-70572501 | None:intergenic | 45.0% |
| ! | ATGCTCTGAGTGGACAACAA+GGG | + | chr4_4:70572516-70572535 | None:intergenic | 45.0% |
| CCAGTGGTTGAGTACCTATT+AGG | + | chr4_4:70572621-70572640 | None:intergenic | 45.0% | |
| CCTAATAGGTACTCAACCAC+TGG | - | chr4_4:70572618-70572637 | Msa0699790:intron | 45.0% | |
| TGTGGGCCCATTTAAGAATG+AGG | - | chr4_4:70572754-70572773 | Msa0699790:intron | 45.0% | |
| CCTAATAGGTACTCCCATTG+TGG | + | chr4_4:70572827-70572846 | None:intergenic | 45.0% | |
| !! | CCACAATGGGAGTACCTATT+AGG | - | chr4_4:70572824-70572843 | Msa0699790:intron | 45.0% |
| !! | CACATGAGAGCATCCACAAT+GGG | + | chr4_4:70572876-70572895 | None:intergenic | 45.0% |
| !! | ACACATGAGAGCATCCACAA+TGG | + | chr4_4:70572877-70572896 | None:intergenic | 45.0% |
| AAATGTCTAACTAGTGCCCC+AGG | + | chr4_4:70573140-70573159 | None:intergenic | 45.0% | |
| CTACAACGCTGTAGAGTTTG+TGG | - | chr4_4:70573241-70573260 | Msa0699790:CDS | 45.0% | |
| ATGGATAGAAGCTAGAACGG+TGG | - | chr4_4:70573347-70573366 | Msa0699790:CDS | 45.0% | |
| TGGATAGAAGCTAGAACGGT+GGG | - | chr4_4:70573348-70573367 | Msa0699790:CDS | 45.0% | |
| AAGCATAGGAGCAATGGGTA+TGG | - | chr4_4:70573374-70573393 | Msa0699790:CDS | 45.0% | |
| TCGTTGGAGCTAAAACAGTG+TGG | - | chr4_4:70573523-70573542 | Msa0699790:CDS | 45.0% | |
| !!! | ATTTATTATTATTTTTTATG+AGG | - | chr4_4:70570065-70570084 | Msa0699790:intron | 5.0% |
| !!! | TTTATTATTATTTTTTATGA+GGG | - | chr4_4:70570066-70570085 | Msa0699790:intron | 5.0% |
| !! | ATTAAATAAATAATATTGAT+GGG | + | chr4_4:70572673-70572692 | None:intergenic | 5.0% |
| !! | TATTAAATAAATAATATTGA+TGG | + | chr4_4:70572674-70572693 | None:intergenic | 5.0% |
| !!! | TTAATTTTAATTTGATATAA+TGG | - | chr4_4:70573022-70573041 | Msa0699790:intron | 5.0% |
| TTCGAGTGAGGCCGAGTTAA+TGG | - | chr4_4:70569271-70569290 | Msa0699790:CDS | 50.0% | |
| TCGAGTGAGGCCGAGTTAAT+GGG | - | chr4_4:70569272-70569291 | Msa0699790:CDS | 50.0% | |
| AGAACGCTCACAAAAGGGAG+AGG | - | chr4_4:70569423-70569442 | Msa0699790:intron | 50.0% | |
| TCACAAAAGGGAGAGGACGA+TGG | - | chr4_4:70569430-70569449 | Msa0699790:intron | 50.0% | |
| GGCTAAACGTGCAATGCGAA+TGG | - | chr4_4:70569451-70569470 | Msa0699790:intron | 50.0% | |
| CGAAAAGGCGAACCATGAAG+AGG | + | chr4_4:70569515-70569534 | None:intergenic | 50.0% | |
| TCAACACCAAGGGACCGAAA+AGG | + | chr4_4:70569530-70569549 | None:intergenic | 50.0% | |
| TTCGCAGCAGCTCTCATATC+TGG | + | chr4_4:70569608-70569627 | None:intergenic | 50.0% | |
| !!! | TTGGCCCGGAAGTTTTAGAC+AGG | - | chr4_4:70569688-70569707 | Msa0699790:intron | 50.0% |
| TTTAGACAGGTGGACCAAGG+AGG | - | chr4_4:70569701-70569720 | Msa0699790:intron | 50.0% | |
| TCAGGAGATGCAGATGCTTG+AGG | + | chr4_4:70569791-70569810 | None:intergenic | 50.0% | |
| CCGTGAGATGTGGTTCAAAG+TGG | - | chr4_4:70570408-70570427 | Msa0699790:CDS | 50.0% | |
| ACCACTGGGACTTTACTTGG+TGG | + | chr4_4:70570544-70570563 | None:intergenic | 50.0% | |
| ACACAGATATGTGGACCACG+TGG | - | chr4_4:70570663-70570682 | Msa0699790:intron | 50.0% | |
| CATGTGCATCTTCAACCACG+TGG | + | chr4_4:70570681-70570700 | None:intergenic | 50.0% | |
| !! | ATGAGTGGACTGGATTCCAC+TGG | + | chr4_4:70570901-70570920 | None:intergenic | 50.0% |
| GACCAGGATTCTCTCCAATG+AGG | + | chr4_4:70571004-70571023 | None:intergenic | 50.0% | |
| ! | CGCGTCCTTTTCGGAATACA+AGG | + | chr4_4:70571889-70571908 | None:intergenic | 50.0% |
| ! | TTGGGCTAGGACTTCTAGAC+AGG | - | chr4_4:70572034-70572053 | Msa0699790:intron | 50.0% |
| GGGTGTATCGGGATGATTTC+GGG | - | chr4_4:70572082-70572101 | Msa0699790:intron | 50.0% | |
| !! | TCCGGAAGTATGGCTTTTGG+GGG | - | chr4_4:70572396-70572415 | Msa0699790:intron | 50.0% |
| ! | GATGCTCTGAGTGGACAACA+AGG | + | chr4_4:70572517-70572536 | None:intergenic | 50.0% |
| ! | GTCCACTCAGAGCATCACAA+TGG | - | chr4_4:70572521-70572540 | Msa0699790:intron | 50.0% |
| ! | CTCCATTGTGATGCTCTGAG+TGG | + | chr4_4:70572526-70572545 | None:intergenic | 50.0% |
| !! | GGGAGTACCTATTAGGTACC+AGG | - | chr4_4:70572831-70572850 | Msa0699790:intron | 50.0% |
| ! | GGCAGAAGCATAGGAGCAAT+GGG | - | chr4_4:70573369-70573388 | Msa0699790:CDS | 50.0% |
| GGACGCAACCACTTCATTTG+AGG | + | chr4_4:70573405-70573424 | None:intergenic | 50.0% | |
| CTTCGCCATCGGTAACTCCA+AGG | - | chr4_4:70569339-70569358 | Msa0699790:CDS | 55.0% | |
| GGAGCCCTCATTGTTGACGA+TGG | + | chr4_4:70569587-70569606 | None:intergenic | 55.0% | |
| ! | GATGCAGGTAGCTTTTGGCC+CGG | - | chr4_4:70569674-70569693 | Msa0699790:intron | 55.0% |
| !!! | GCCCGGAAGTTTTAGACAGG+TGG | - | chr4_4:70569691-70569710 | Msa0699790:intron | 55.0% |
| GATGCAGATGCTTGAGGTGG+AGG | + | chr4_4:70569785-70569804 | None:intergenic | 55.0% | |
| GGAGATGCAGATGCTTGAGG+TGG | + | chr4_4:70569788-70569807 | None:intergenic | 55.0% | |
| GCCACCAAGTAAAGTCCCAG+TGG | - | chr4_4:70570540-70570559 | Msa0699790:intron | 55.0% | |
| ! | TTGAAAGGGCGTAGCAGCGT+AGG | - | chr4_4:70570615-70570634 | Msa0699790:intron | 55.0% |
| !! | GTGGACTGGATTCCACTGGA+CGG | + | chr4_4:70570897-70570916 | None:intergenic | 55.0% |
| CACACACAACTGTGAGGTCC+CGG | - | chr4_4:70571961-70571980 | Msa0699790:intron | 55.0% | |
| ACACACAACTGTGAGGTCCC+GGG | - | chr4_4:70571962-70571981 | Msa0699790:intron | 55.0% | |
| GACGTCCGGCCTTGCAATTT+CGG | - | chr4_4:70572001-70572020 | Msa0699790:intron | 55.0% | |
| CGGCATTTGTCAGTTGGGCT+AGG | - | chr4_4:70572021-70572040 | Msa0699790:intron | 55.0% | |
| CCCCCCAAAAGCCATACTTC+CGG | + | chr4_4:70572400-70572419 | None:intergenic | 55.0% | |
| !! | CCGGAAGTATGGCTTTTGGG+GGG | - | chr4_4:70572397-70572416 | Msa0699790:intron | 55.0% |
| ! | AGAACGGTGGGCAGAAGCAT+AGG | - | chr4_4:70573360-70573379 | Msa0699790:CDS | 55.0% |
| ! | GGGCAGAAGCATAGGAGCAA+TGG | - | chr4_4:70573368-70573387 | Msa0699790:CDS | 55.0% |
| ! | GGTTCGCCTTTTCGGTCCCT+TGG | - | chr4_4:70569521-70569540 | Msa0699790:intron | 60.0% |
| !! | TGAGGTGGAGGAGGTGCCAT+TGG | + | chr4_4:70569773-70569792 | None:intergenic | 60.0% |
| GCAGATGCTTGAGGTGGAGG+AGG | + | chr4_4:70569782-70569801 | None:intergenic | 60.0% | |
| AAGTGGTTGCGTCCTCCACG+AGG | - | chr4_4:70573411-70573430 | Msa0699790:CDS | 60.0% | |
| CGTAGCAGCGTAGGTGCCCA+AGG | - | chr4_4:70570624-70570643 | Msa0699790:intron | 65.0% | |
| GGACGGTGCAGTGACAGGAG+AGG | + | chr4_4:70570880-70570899 | None:intergenic | 65.0% | |
| CCACTGGACGGTGCAGTGAC+AGG | + | chr4_4:70570885-70570904 | None:intergenic | 65.0% | |
| CCTGTCACTGCACCGTCCAG+TGG | - | chr4_4:70570882-70570901 | Msa0699790:intron | 65.0% | |
| TGAGGTCCCGGGTTCGAACC+CGG | - | chr4_4:70571973-70571992 | Msa0699790:intron | 65.0% | |
| TCGTGACCCGGGTTCGAACC+CGG | + | chr4_4:70571983-70572002 | None:intergenic | 65.0% | |
| GAGGTCCCGGGTTCGAACCC+GGG | - | chr4_4:70571974-70571993 | Msa0699790:intron | 70.0% | |
| CGTGACCCGGGTTCGAACCC+GGG | + | chr4_4:70571982-70572001 | None:intergenic | 70.0% | |
| CGAACCCGGGTCACGACGTC+CGG | - | chr4_4:70571987-70572006 | Msa0699790:intron | 70.0% | |
| AAGGCCGGACGTCGTGACCC+GGG | + | chr4_4:70571994-70572013 | None:intergenic | 70.0% | |
| CAAGGCCGGACGTCGTGACC+CGG | + | chr4_4:70571995-70572014 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 70569176 | 70573551 | 70569176 | ID=Msa0699790;Name=Msa0699790 |
| chr4_4 | mRNA | 70569176 | 70573551 | 70569176 | ID=Msa0699790-mRNA-1;Parent=Msa0699790;Name=Msa0699790-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.66|1|1|3|0|290 |
| chr4_4 | exon | 70573047 | 70573551 | 70573047 | ID=Msa0699790-mRNA-1:exon:21365;Parent=Msa0699790-mRNA-1 |
| chr4_4 | exon | 70570325 | 70570428 | 70570325 | ID=Msa0699790-mRNA-1:exon:21364;Parent=Msa0699790-mRNA-1 |
| chr4_4 | exon | 70569176 | 70569439 | 70569176 | ID=Msa0699790-mRNA-1:exon:21363;Parent=Msa0699790-mRNA-1 |
| chr4_4 | CDS | 70573047 | 70573551 | 70573047 | ID=Msa0699790-mRNA-1:cds;Parent=Msa0699790-mRNA-1 |
| chr4_4 | CDS | 70570325 | 70570428 | 70570325 | ID=Msa0699790-mRNA-1:cds;Parent=Msa0699790-mRNA-1 |
| chr4_4 | CDS | 70569176 | 70569439 | 70569176 | ID=Msa0699790-mRNA-1:cds;Parent=Msa0699790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
