Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617160 | XP_024627676.1 | 95.968 | 248 | 9 | 1 | 1 | 247 | 1 | 248 | 9.19e-176 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617160 | Msa0656170 | 0.945593 | 2.283902e-104 | -8.615850e-47 |
| Msa0617160 | Msa0699970 | 0.906802 | 1.005218e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617160 | MtrunA17_Chr8g0376721 | 95.968 | 248 | 9 | 1 | 1 | 247 | 1 | 248 | 8.45e-180 | 493 |
| Msa0617160 | MtrunA17_Chr2g0285421 | 65.182 | 247 | 84 | 2 | 2 | 247 | 1 | 246 | 1.91e-117 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATCCAGATTATAGAAAT+TGG | 0.211714 | 4_2:+67555955 | Msa0617160:CDS |
| ATCATACTTCATCATGTTAA+TGG | 0.223361 | 4_2:-67556003 | None:intergenic |
| ATGCAATCCTTGCAATATTT+AGG | 0.247387 | 4_2:+67555814 | Msa0617160:CDS |
| ATCATCCAATTTCTATAATC+TGG | 0.269076 | 4_2:-67555960 | None:intergenic |
| ATATAACATTAGGTAACTTT+TGG | 0.323032 | 4_2:-67555887 | None:intergenic |
| CAAGAGTATCCATGGAAATA+TGG | 0.330050 | 4_2:+67554869 | Msa0617160:CDS |
| TTGCATAGCACAAATCATTA+AGG | 0.358283 | 4_2:-67555797 | None:intergenic |
| ATTTGTGACTATTGAGTTCA+TGG | 0.370041 | 4_2:-67555766 | None:intergenic |
| TGTACTGATACTAGATCATA+TGG | 0.393061 | 4_2:+67554998 | Msa0617160:intron |
| TCCTCACGTGCTGAGAATCT+TGG | 0.396867 | 4_2:+67554825 | Msa0617160:CDS |
| TTTCGAGTGGTATATGTTAG+TGG | 0.405631 | 4_2:+67556029 | Msa0617160:CDS |
| AATTCAGGACTTTGCTTGAA+AGG | 0.417371 | 4_2:+67555864 | Msa0617160:CDS |
| ACATGAATGCATATAACATT+AGG | 0.425221 | 4_2:-67555897 | None:intergenic |
| TGATTATAATGTTCAGATGT+TGG | 0.449350 | 4_2:+67556076 | Msa0617160:CDS |
| GTTTGATTTCATGAATAAGA+TGG | 0.454595 | 4_2:-67554797 | None:intergenic |
| TGATACTAGATCATATGGTT+TGG | 0.460097 | 4_2:+67555003 | Msa0617160:intron |
| AAAACGGTCTTATGATGAAA+AGG | 0.477023 | 4_2:+67555035 | Msa0617160:CDS |
| ATGGAGAACCGTTCAAGATA+AGG | 0.494548 | 4_2:-67555984 | None:intergenic |
| TATTTCCTCAATGCATATGC+TGG | 0.506807 | 4_2:+67555690 | Msa0617160:CDS |
| GGATGATTCCTTATCTTGAA+CGG | 0.529425 | 4_2:+67555976 | Msa0617160:CDS |
| GCTAATGCATGTAACAAGAA+TGG | 0.535827 | 4_2:+67555650 | Msa0617160:CDS |
| AGATCATATGGTTTGGAGCA+TGG | 0.539450 | 4_2:+67555010 | Msa0617160:intron |
| ATTCTCCAGCATATGCATTG+AGG | 0.539548 | 4_2:-67555695 | None:intergenic |
| TGGTCAACAATTACTACAGT+TGG | 0.545716 | 4_2:-67554777 | None:intergenic |
| TGTAACAAGAATGGCTGTCT+TGG | 0.548408 | 4_2:+67555659 | Msa0617160:CDS |
| TCTATACTCAAGAGTATCCA+TGG | 0.558936 | 4_2:+67554861 | Msa0617160:CDS |
| ATATATATACCATATTTCCA+TGG | 0.601472 | 4_2:-67554878 | None:intergenic |
| AACGTGACCTAAATATTGCA+AGG | 0.604286 | 4_2:-67555821 | None:intergenic |
| AATGAAGAAGAGAGTAGACA+TGG | 0.612945 | 4_2:+67556101 | Msa0617160:CDS |
| ATCTGAACATTATAATCACA+AGG | 0.647029 | 4_2:-67556071 | None:intergenic |
| ATGTTATATGCATTCATGTG+TGG | 0.651979 | 4_2:+67555901 | Msa0617160:CDS |
| ACCAAGATTCTCAGCACGTG+AGG | 0.657985 | 4_2:-67554826 | None:intergenic |
| TATGCTGGAGAATCAAGAGA+TGG | 0.661834 | 4_2:+67555705 | Msa0617160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAGTTTTCTTAGATTT+TGG | + | chr4_2:67554955-67554974 | Msa0617160:intron | 15.0% |
| !! | GATAGATTATATATACTTTA+TGG | - | chr4_2:67555299-67555318 | None:intergenic | 15.0% |
| !!! | TTTTAAGTTTTCTTAGATTT+TGG | + | chr4_2:67554955-67554974 | Msa0617160:intron | 15.0% |
| !! | GATAGATTATATATACTTTA+TGG | - | chr4_2:67555299-67555318 | None:intergenic | 15.0% |
| !! | ATATATATACCATATTTCCA+TGG | - | chr4_2:67554881-67554900 | None:intergenic | 20.0% |
| !! | GAAAGAATATTAAATTTCCT+TGG | - | chr4_2:67555438-67555457 | None:intergenic | 20.0% |
| !! | TTTAGATATTCTGTCATATT+AGG | - | chr4_2:67555523-67555542 | None:intergenic | 20.0% |
| !!! | TCAACTATAAATTTTAGTAC+AGG | + | chr4_2:67555732-67555751 | Msa0617160:CDS | 20.0% |
| !!! | ATATAACATTAGGTAACTTT+TGG | - | chr4_2:67555890-67555909 | None:intergenic | 20.0% |
| !! | TAAATCCAGATTATAGAAAT+TGG | + | chr4_2:67555955-67555974 | Msa0617160:CDS | 20.0% |
| !! | ATATATATACCATATTTCCA+TGG | - | chr4_2:67554881-67554900 | None:intergenic | 20.0% |
| !! | GAAAGAATATTAAATTTCCT+TGG | - | chr4_2:67555438-67555457 | None:intergenic | 20.0% |
| !! | TTTAGATATTCTGTCATATT+AGG | - | chr4_2:67555523-67555542 | None:intergenic | 20.0% |
| !!! | TCAACTATAAATTTTAGTAC+AGG | + | chr4_2:67555732-67555751 | Msa0617160:CDS | 20.0% |
| !!! | ATATAACATTAGGTAACTTT+TGG | - | chr4_2:67555890-67555909 | None:intergenic | 20.0% |
| !! | TAAATCCAGATTATAGAAAT+TGG | + | chr4_2:67555955-67555974 | Msa0617160:CDS | 20.0% |
| !! | GTTTGATTTCATGAATAAGA+TGG | - | chr4_2:67554800-67554819 | None:intergenic | 25.0% |
| ! | AAAACTAGAGAAATGAAAGA+TGG | - | chr4_2:67554906-67554925 | None:intergenic | 25.0% |
| ! | AAGAAGGAAAAGCAATAAAT+GGG | - | chr4_2:67555107-67555126 | None:intergenic | 25.0% |
| ! | GTACATAAAAAGTCTACTTT+AGG | - | chr4_2:67555137-67555156 | None:intergenic | 25.0% |
| !!! | TGAGGAATGTTACTTATTTT+TGG | + | chr4_2:67555171-67555190 | Msa0617160:intron | 25.0% |
| !!! | TTACTTATTTTTGGTCATGA+GGG | + | chr4_2:67555180-67555199 | Msa0617160:intron | 25.0% |
| ! | ACATGAATGCATATAACATT+AGG | - | chr4_2:67555900-67555919 | None:intergenic | 25.0% |
| ! | ATCATCCAATTTCTATAATC+TGG | - | chr4_2:67555963-67555982 | None:intergenic | 25.0% |
| ! | ATCATACTTCATCATGTTAA+TGG | - | chr4_2:67556006-67556025 | None:intergenic | 25.0% |
| ! | ATCTGAACATTATAATCACA+AGG | - | chr4_2:67556074-67556093 | None:intergenic | 25.0% |
| ! | TGATTATAATGTTCAGATGT+TGG | + | chr4_2:67556076-67556095 | Msa0617160:CDS | 25.0% |
| !! | GTTTGATTTCATGAATAAGA+TGG | - | chr4_2:67554800-67554819 | None:intergenic | 25.0% |
| ! | AAAACTAGAGAAATGAAAGA+TGG | - | chr4_2:67554906-67554925 | None:intergenic | 25.0% |
| ! | AAGAAGGAAAAGCAATAAAT+GGG | - | chr4_2:67555107-67555126 | None:intergenic | 25.0% |
| ! | GTACATAAAAAGTCTACTTT+AGG | - | chr4_2:67555137-67555156 | None:intergenic | 25.0% |
| !!! | TGAGGAATGTTACTTATTTT+TGG | + | chr4_2:67555171-67555190 | Msa0617160:intron | 25.0% |
| !!! | TTACTTATTTTTGGTCATGA+GGG | + | chr4_2:67555180-67555199 | Msa0617160:intron | 25.0% |
| ! | ACATGAATGCATATAACATT+AGG | - | chr4_2:67555900-67555919 | None:intergenic | 25.0% |
| ! | ATCATCCAATTTCTATAATC+TGG | - | chr4_2:67555963-67555982 | None:intergenic | 25.0% |
| ! | ATCATACTTCATCATGTTAA+TGG | - | chr4_2:67556006-67556025 | None:intergenic | 25.0% |
| ! | ATCTGAACATTATAATCACA+AGG | - | chr4_2:67556074-67556093 | None:intergenic | 25.0% |
| ! | TGATTATAATGTTCAGATGT+TGG | + | chr4_2:67556076-67556095 | Msa0617160:CDS | 25.0% |
| !! | AGATTTTAGCAACAAGGATT+TGG | + | chr4_2:67554731-67554750 | Msa0617160:CDS | 30.0% |
| ! | TGTACTGATACTAGATCATA+TGG | + | chr4_2:67554998-67555017 | Msa0617160:intron | 30.0% |
| TGATACTAGATCATATGGTT+TGG | + | chr4_2:67555003-67555022 | Msa0617160:intron | 30.0% | |
| ! | AAAACGGTCTTATGATGAAA+AGG | + | chr4_2:67555035-67555054 | Msa0617160:CDS | 30.0% |
| CAAGAAGGAAAAGCAATAAA+TGG | - | chr4_2:67555108-67555127 | None:intergenic | 30.0% | |
| !! | TACTTTAGGACAAAACAAGA+AGG | - | chr4_2:67555123-67555142 | None:intergenic | 30.0% |
| ATAAGTAACATTCCTCATCA+CGG | - | chr4_2:67555168-67555187 | None:intergenic | 30.0% | |
| !!! | GTTACTTATTTTTGGTCATG+AGG | + | chr4_2:67555179-67555198 | Msa0617160:intron | 30.0% |
| ATAGCCCTTAACATCTTAAT+AGG | + | chr4_2:67555359-67555378 | Msa0617160:intron | 30.0% | |
| AAAATGTCCATAAAGAGATG+TGG | - | chr4_2:67555397-67555416 | None:intergenic | 30.0% | |
| ! | TCTAAAACTGACACATTAAC+TGG | + | chr4_2:67555537-67555556 | Msa0617160:intron | 30.0% |
| ATTTGTGACTATTGAGTTCA+TGG | - | chr4_2:67555769-67555788 | None:intergenic | 30.0% | |
| TTGCATAGCACAAATCATTA+AGG | - | chr4_2:67555800-67555819 | None:intergenic | 30.0% | |
| ATGCAATCCTTGCAATATTT+AGG | + | chr4_2:67555814-67555833 | Msa0617160:CDS | 30.0% | |
| ! | TCACGTTTTTCACAAATAGA+AGG | + | chr4_2:67555837-67555856 | Msa0617160:CDS | 30.0% |
| CAAATAGAAGGCAAAAATTC+AGG | + | chr4_2:67555849-67555868 | Msa0617160:CDS | 30.0% | |
| ATGTTATATGCATTCATGTG+TGG | + | chr4_2:67555901-67555920 | Msa0617160:CDS | 30.0% | |
| !!! | GAAGTATGATATTTTTCGAG+TGG | + | chr4_2:67556016-67556035 | Msa0617160:CDS | 30.0% |
| !! | AGATTTTAGCAACAAGGATT+TGG | + | chr4_2:67554731-67554750 | Msa0617160:CDS | 30.0% |
| ! | TGTACTGATACTAGATCATA+TGG | + | chr4_2:67554998-67555017 | Msa0617160:intron | 30.0% |
| TGATACTAGATCATATGGTT+TGG | + | chr4_2:67555003-67555022 | Msa0617160:intron | 30.0% | |
| ! | AAAACGGTCTTATGATGAAA+AGG | + | chr4_2:67555035-67555054 | Msa0617160:CDS | 30.0% |
| CAAGAAGGAAAAGCAATAAA+TGG | - | chr4_2:67555108-67555127 | None:intergenic | 30.0% | |
| !! | TACTTTAGGACAAAACAAGA+AGG | - | chr4_2:67555123-67555142 | None:intergenic | 30.0% |
| ATAAGTAACATTCCTCATCA+CGG | - | chr4_2:67555168-67555187 | None:intergenic | 30.0% | |
| !!! | GTTACTTATTTTTGGTCATG+AGG | + | chr4_2:67555179-67555198 | Msa0617160:intron | 30.0% |
| ATAGCCCTTAACATCTTAAT+AGG | + | chr4_2:67555359-67555378 | Msa0617160:intron | 30.0% | |
| AAAATGTCCATAAAGAGATG+TGG | - | chr4_2:67555397-67555416 | None:intergenic | 30.0% | |
| ! | TCTAAAACTGACACATTAAC+TGG | + | chr4_2:67555537-67555556 | Msa0617160:intron | 30.0% |
| ATTTGTGACTATTGAGTTCA+TGG | - | chr4_2:67555769-67555788 | None:intergenic | 30.0% | |
| TTGCATAGCACAAATCATTA+AGG | - | chr4_2:67555800-67555819 | None:intergenic | 30.0% | |
| ATGCAATCCTTGCAATATTT+AGG | + | chr4_2:67555814-67555833 | Msa0617160:CDS | 30.0% | |
| ! | TCACGTTTTTCACAAATAGA+AGG | + | chr4_2:67555837-67555856 | Msa0617160:CDS | 30.0% |
| CAAATAGAAGGCAAAAATTC+AGG | + | chr4_2:67555849-67555868 | Msa0617160:CDS | 30.0% | |
| ATGTTATATGCATTCATGTG+TGG | + | chr4_2:67555901-67555920 | Msa0617160:CDS | 30.0% | |
| !!! | GAAGTATGATATTTTTCGAG+TGG | + | chr4_2:67556016-67556035 | Msa0617160:CDS | 30.0% |
| !! | CTGCATAGATTTTAGCAACA+AGG | + | chr4_2:67554725-67554744 | Msa0617160:CDS | 35.0% |
| TGGTCAACAATTACTACAGT+TGG | - | chr4_2:67554780-67554799 | None:intergenic | 35.0% | |
| !! | TCTATACTCAAGAGTATCCA+TGG | + | chr4_2:67554861-67554880 | Msa0617160:CDS | 35.0% |
| !! | CAAGAGTATCCATGGAAATA+TGG | + | chr4_2:67554869-67554888 | Msa0617160:CDS | 35.0% |
| TAAATGGGAAGTAGTAGTGA+GGG | - | chr4_2:67555092-67555111 | None:intergenic | 35.0% | |
| ATAAATGGGAAGTAGTAGTG+AGG | - | chr4_2:67555093-67555112 | None:intergenic | 35.0% | |
| CTCTCTTCAATTTAGTGTTC+TGG | + | chr4_2:67555249-67555268 | Msa0617160:intron | 35.0% | |
| CCCTCCTATTAAGATGTTAA+GGG | - | chr4_2:67555366-67555385 | None:intergenic | 35.0% | |
| CCCTTAACATCTTAATAGGA+GGG | + | chr4_2:67555363-67555382 | Msa0617160:intron | 35.0% | |
| TCCCTCCTATTAAGATGTTA+AGG | - | chr4_2:67555367-67555386 | None:intergenic | 35.0% | |
| CTTTGATCCACATCTCTTTA+TGG | + | chr4_2:67555387-67555406 | Msa0617160:intron | 35.0% | |
| CTTGGCATGACTTTATACAT+GGG | - | chr4_2:67555420-67555439 | None:intergenic | 35.0% | |
| GGAAAGTAGAAATGCAAAAC+AGG | - | chr4_2:67555502-67555521 | None:intergenic | 35.0% | |
| GCTAATGCATGTAACAAGAA+TGG | + | chr4_2:67555650-67555669 | Msa0617160:CDS | 35.0% | |
| TATTTCCTCAATGCATATGC+TGG | + | chr4_2:67555690-67555709 | Msa0617160:CDS | 35.0% | |
| AACGTGACCTAAATATTGCA+AGG | - | chr4_2:67555824-67555843 | None:intergenic | 35.0% | |
| AATTCAGGACTTTGCTTGAA+AGG | + | chr4_2:67555864-67555883 | Msa0617160:CDS | 35.0% | |
| !!! | CACTACAGTTTTGTTACTCA+TGG | + | chr4_2:67555928-67555947 | Msa0617160:CDS | 35.0% |
| GGATGATTCCTTATCTTGAA+CGG | + | chr4_2:67555976-67555995 | Msa0617160:CDS | 35.0% | |
| ! | TTTCGAGTGGTATATGTTAG+TGG | + | chr4_2:67556029-67556048 | Msa0617160:CDS | 35.0% |
| AATGAAGAAGAGAGTAGACA+TGG | + | chr4_2:67556101-67556120 | Msa0617160:CDS | 35.0% | |
| !! | CTGCATAGATTTTAGCAACA+AGG | + | chr4_2:67554725-67554744 | Msa0617160:CDS | 35.0% |
| TGGTCAACAATTACTACAGT+TGG | - | chr4_2:67554780-67554799 | None:intergenic | 35.0% | |
| !! | TCTATACTCAAGAGTATCCA+TGG | + | chr4_2:67554861-67554880 | Msa0617160:CDS | 35.0% |
| !! | CAAGAGTATCCATGGAAATA+TGG | + | chr4_2:67554869-67554888 | Msa0617160:CDS | 35.0% |
| TAAATGGGAAGTAGTAGTGA+GGG | - | chr4_2:67555092-67555111 | None:intergenic | 35.0% | |
| ATAAATGGGAAGTAGTAGTG+AGG | - | chr4_2:67555093-67555112 | None:intergenic | 35.0% | |
| CTCTCTTCAATTTAGTGTTC+TGG | + | chr4_2:67555249-67555268 | Msa0617160:intron | 35.0% | |
| CCCTCCTATTAAGATGTTAA+GGG | - | chr4_2:67555366-67555385 | None:intergenic | 35.0% | |
| CCCTTAACATCTTAATAGGA+GGG | + | chr4_2:67555363-67555382 | Msa0617160:intron | 35.0% | |
| TCCCTCCTATTAAGATGTTA+AGG | - | chr4_2:67555367-67555386 | None:intergenic | 35.0% | |
| CTTTGATCCACATCTCTTTA+TGG | + | chr4_2:67555387-67555406 | Msa0617160:intron | 35.0% | |
| CTTGGCATGACTTTATACAT+GGG | - | chr4_2:67555420-67555439 | None:intergenic | 35.0% | |
| GGAAAGTAGAAATGCAAAAC+AGG | - | chr4_2:67555502-67555521 | None:intergenic | 35.0% | |
| GCTAATGCATGTAACAAGAA+TGG | + | chr4_2:67555650-67555669 | Msa0617160:CDS | 35.0% | |
| TATTTCCTCAATGCATATGC+TGG | + | chr4_2:67555690-67555709 | Msa0617160:CDS | 35.0% | |
| AACGTGACCTAAATATTGCA+AGG | - | chr4_2:67555824-67555843 | None:intergenic | 35.0% | |
| AATTCAGGACTTTGCTTGAA+AGG | + | chr4_2:67555864-67555883 | Msa0617160:CDS | 35.0% | |
| !!! | CACTACAGTTTTGTTACTCA+TGG | + | chr4_2:67555928-67555947 | Msa0617160:CDS | 35.0% |
| GGATGATTCCTTATCTTGAA+CGG | + | chr4_2:67555976-67555995 | Msa0617160:CDS | 35.0% | |
| ! | TTTCGAGTGGTATATGTTAG+TGG | + | chr4_2:67556029-67556048 | Msa0617160:CDS | 35.0% |
| AATGAAGAAGAGAGTAGACA+TGG | + | chr4_2:67556101-67556120 | Msa0617160:CDS | 35.0% | |
| ! | AGATCATATGGTTTGGAGCA+TGG | + | chr4_2:67555010-67555029 | Msa0617160:intron | 40.0% |
| AAATGGGAAGTAGTAGTGAG+GGG | - | chr4_2:67555091-67555110 | None:intergenic | 40.0% | |
| !!! | CTTATTTTTGGTCATGAGGG+TGG | + | chr4_2:67555183-67555202 | Msa0617160:intron | 40.0% |
| GCCCTTAACATCTTAATAGG+AGG | + | chr4_2:67555362-67555381 | Msa0617160:intron | 40.0% | |
| CCTTGGCATGACTTTATACA+TGG | - | chr4_2:67555421-67555440 | None:intergenic | 40.0% | |
| CCATGTATAAAGTCATGCCA+AGG | + | chr4_2:67555418-67555437 | Msa0617160:intron | 40.0% | |
| !! | TTAGCATTGATAGCTGCAAG+AGG | - | chr4_2:67555635-67555654 | None:intergenic | 40.0% |
| TGTAACAAGAATGGCTGTCT+TGG | + | chr4_2:67555659-67555678 | Msa0617160:CDS | 40.0% | |
| ATTCTCCAGCATATGCATTG+AGG | - | chr4_2:67555698-67555717 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr4_2:67555705-67555724 | Msa0617160:CDS | 40.0% | |
| ATGGAGAACCGTTCAAGATA+AGG | - | chr4_2:67555987-67556006 | None:intergenic | 40.0% | |
| ! | AGATCATATGGTTTGGAGCA+TGG | + | chr4_2:67555010-67555029 | Msa0617160:intron | 40.0% |
| AAATGGGAAGTAGTAGTGAG+GGG | - | chr4_2:67555091-67555110 | None:intergenic | 40.0% | |
| !!! | CTTATTTTTGGTCATGAGGG+TGG | + | chr4_2:67555183-67555202 | Msa0617160:intron | 40.0% |
| GCCCTTAACATCTTAATAGG+AGG | + | chr4_2:67555362-67555381 | Msa0617160:intron | 40.0% | |
| CCTTGGCATGACTTTATACA+TGG | - | chr4_2:67555421-67555440 | None:intergenic | 40.0% | |
| CCATGTATAAAGTCATGCCA+AGG | + | chr4_2:67555418-67555437 | Msa0617160:intron | 40.0% | |
| !! | TTAGCATTGATAGCTGCAAG+AGG | - | chr4_2:67555635-67555654 | None:intergenic | 40.0% |
| TGTAACAAGAATGGCTGTCT+TGG | + | chr4_2:67555659-67555678 | Msa0617160:CDS | 40.0% | |
| ATTCTCCAGCATATGCATTG+AGG | - | chr4_2:67555698-67555717 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr4_2:67555705-67555724 | Msa0617160:CDS | 40.0% | |
| ATGGAGAACCGTTCAAGATA+AGG | - | chr4_2:67555987-67556006 | None:intergenic | 40.0% | |
| ! | GGTTTGGAGCATGGCAAAAA+CGG | + | chr4_2:67555019-67555038 | Msa0617160:CDS | 45.0% |
| AGTGAGGGGTCATACTTACA+AGG | - | chr4_2:67555077-67555096 | None:intergenic | 45.0% | |
| GTACTTCTACAACCGTGATG+AGG | + | chr4_2:67555153-67555172 | Msa0617160:intron | 45.0% | |
| ! | GGTTTGGAGCATGGCAAAAA+CGG | + | chr4_2:67555019-67555038 | Msa0617160:CDS | 45.0% |
| AGTGAGGGGTCATACTTACA+AGG | - | chr4_2:67555077-67555096 | None:intergenic | 45.0% | |
| GTACTTCTACAACCGTGATG+AGG | + | chr4_2:67555153-67555172 | Msa0617160:intron | 45.0% | |
| TCCTCACGTGCTGAGAATCT+TGG | + | chr4_2:67554825-67554844 | Msa0617160:CDS | 50.0% | |
| ACCAAGATTCTCAGCACGTG+AGG | - | chr4_2:67554829-67554848 | None:intergenic | 50.0% | |
| TCCTCACGTGCTGAGAATCT+TGG | + | chr4_2:67554825-67554844 | Msa0617160:CDS | 50.0% | |
| ACCAAGATTCTCAGCACGTG+AGG | - | chr4_2:67554829-67554848 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 67554714 | 67556142 | 67554714 | ID=Msa0617160;Name=Msa0617160 |
| chr4_2 | mRNA | 67554714 | 67556142 | 67554714 | ID=Msa0617160-mRNA-1;Parent=Msa0617160;Name=Msa0617160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|247 |
| chr4_2 | exon | 67554714 | 67554890 | 67554714 | ID=Msa0617160-mRNA-1:exon:19303;Parent=Msa0617160-mRNA-1 |
| chr4_2 | exon | 67555012 | 67555077 | 67555012 | ID=Msa0617160-mRNA-1:exon:19304;Parent=Msa0617160-mRNA-1 |
| chr4_2 | exon | 67555642 | 67556142 | 67555642 | ID=Msa0617160-mRNA-1:exon:19305;Parent=Msa0617160-mRNA-1 |
| chr4_2 | CDS | 67554714 | 67554890 | 67554714 | ID=Msa0617160-mRNA-1:cds;Parent=Msa0617160-mRNA-1 |
| chr4_2 | CDS | 67555012 | 67555077 | 67555012 | ID=Msa0617160-mRNA-1:cds;Parent=Msa0617160-mRNA-1 |
| chr4_2 | CDS | 67555642 | 67556142 | 67555642 | ID=Msa0617160-mRNA-1:cds;Parent=Msa0617160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
