Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656170 | XP_024627676.1 | 95.565 | 248 | 10 | 1 | 1 | 247 | 1 | 248 | 1.76e-175 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617160 | Msa0656170 | 0.945593 | 2.283902e-104 | -8.615850e-47 |
| Msa0656170 | Msa0699970 | 0.898262 | 6.301284e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656170 | MtrunA17_Chr8g0376721 | 95.565 | 248 | 10 | 1 | 1 | 247 | 1 | 248 | 1.62e-179 | 492 |
| Msa0656170 | MtrunA17_Chr2g0285421 | 65.587 | 247 | 83 | 2 | 2 | 247 | 1 | 246 | 1.29e-117 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATCCAGATTATAGAAAT+TGG | 0.211714 | 4_3:+65375266 | Msa0656170:CDS |
| ATCATACTTCATCATGTTAA+TGG | 0.223361 | 4_3:-65375314 | None:intergenic |
| ATGCAATCCTTGCAATATTT+AGG | 0.247387 | 4_3:+65375125 | Msa0656170:CDS |
| ATCATCCAATTTCTATAATC+TGG | 0.269076 | 4_3:-65375271 | None:intergenic |
| ATATAACATTAGGTAACTTT+TGG | 0.323032 | 4_3:-65375198 | None:intergenic |
| CAAGAGTATCCATGGAAATA+TGG | 0.330050 | 4_3:+65374178 | Msa0656170:CDS |
| TTGCATAGCACAAATCATTA+AGG | 0.358283 | 4_3:-65375108 | None:intergenic |
| ATTTGTGACTATTGAGTTCA+TGG | 0.370041 | 4_3:-65375077 | None:intergenic |
| TGTACTGATACTAGATCATA+TGG | 0.393061 | 4_3:+65374307 | Msa0656170:intron |
| TCCTCACGTGCTGAGAATCT+TGG | 0.396867 | 4_3:+65374134 | Msa0656170:CDS |
| TTTCGAGTGGTATATGTTAG+TGG | 0.405631 | 4_3:+65375340 | Msa0656170:CDS |
| AATTCAGGACTTTGCTTGAA+AGG | 0.417371 | 4_3:+65375175 | Msa0656170:CDS |
| ACATGAATGCATATAACATT+AGG | 0.425221 | 4_3:-65375208 | None:intergenic |
| TGATTATAATGTTCAGATGT+TGG | 0.449350 | 4_3:+65375387 | Msa0656170:CDS |
| GTTTGATTTCATGAATAAGA+TGG | 0.454595 | 4_3:-65374106 | None:intergenic |
| TGATACTAGATCATATGGTT+TGG | 0.460097 | 4_3:+65374312 | Msa0656170:intron |
| AAAACGGTCTTATGATGAAA+AGG | 0.477023 | 4_3:+65374344 | Msa0656170:CDS |
| ATGGAGAACCGTTCAAGATA+AGG | 0.494548 | 4_3:-65375295 | None:intergenic |
| TATTTCCTCAATGCATATGC+TGG | 0.506807 | 4_3:+65375001 | Msa0656170:CDS |
| GGATGATTCCTTATCTTGAA+CGG | 0.529425 | 4_3:+65375287 | Msa0656170:CDS |
| GCTAATGCATGTAACAAGAA+TGG | 0.535827 | 4_3:+65374961 | Msa0656170:CDS |
| AGATCATATGGTTTGGAGCA+TGG | 0.539450 | 4_3:+65374319 | Msa0656170:intron |
| ATTCTCCAGCATATGCATTG+AGG | 0.539548 | 4_3:-65375006 | None:intergenic |
| TGTAACAAGAATGGCTGTCT+TGG | 0.548408 | 4_3:+65374970 | Msa0656170:CDS |
| TGGTCAATAATTACTACAGT+TGG | 0.556797 | 4_3:-65374086 | None:intergenic |
| TCTATACTCAAGAGTATCCA+TGG | 0.558936 | 4_3:+65374170 | Msa0656170:CDS |
| ATATATATACCATATTTCCA+TGG | 0.601472 | 4_3:-65374187 | None:intergenic |
| AACGTGACCTAAATATTGCA+AGG | 0.604286 | 4_3:-65375132 | None:intergenic |
| AATGAAGAAGAGAGTAGACA+TGG | 0.612945 | 4_3:+65375412 | Msa0656170:CDS |
| ATCTGAACATTATAATCACA+AGG | 0.647029 | 4_3:-65375382 | None:intergenic |
| ATGTTATATGCATTCATGTG+TGG | 0.651979 | 4_3:+65375212 | Msa0656170:CDS |
| ACCAAGATTCTCAGCACGTG+AGG | 0.657985 | 4_3:-65374135 | None:intergenic |
| TATGCTGGAGAATCAAGAGA+TGG | 0.661834 | 4_3:+65375016 | Msa0656170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATTATATATATACTTTA+TGG | - | chr4_3:65374608-65374627 | None:intergenic | 10.0% |
| !! | TAGATTATATATATACTTTA+TGG | - | chr4_3:65374608-65374627 | None:intergenic | 10.0% |
| !!! | TTTTAAGTTTTCTTAGATTT+TGG | + | chr4_3:65374264-65374283 | Msa0656170:intron | 15.0% |
| !!! | TTTTAAGTTTTCTTAGATTT+TGG | + | chr4_3:65374264-65374283 | Msa0656170:intron | 15.0% |
| !! | ATATATATACCATATTTCCA+TGG | - | chr4_3:65374190-65374209 | None:intergenic | 20.0% |
| !! | GAAAGAATATTAAATTTCCT+TGG | - | chr4_3:65374749-65374768 | None:intergenic | 20.0% |
| !! | TTTAGATATTCTGTCATATT+AGG | - | chr4_3:65374834-65374853 | None:intergenic | 20.0% |
| !!! | TCAACTATAAATTTTAGTAC+AGG | + | chr4_3:65375043-65375062 | Msa0656170:CDS | 20.0% |
| !!! | ATATAACATTAGGTAACTTT+TGG | - | chr4_3:65375201-65375220 | None:intergenic | 20.0% |
| !! | TAAATCCAGATTATAGAAAT+TGG | + | chr4_3:65375266-65375285 | Msa0656170:CDS | 20.0% |
| !! | ATATATATACCATATTTCCA+TGG | - | chr4_3:65374190-65374209 | None:intergenic | 20.0% |
| !! | GAAAGAATATTAAATTTCCT+TGG | - | chr4_3:65374749-65374768 | None:intergenic | 20.0% |
| !! | TTTAGATATTCTGTCATATT+AGG | - | chr4_3:65374834-65374853 | None:intergenic | 20.0% |
| !!! | TCAACTATAAATTTTAGTAC+AGG | + | chr4_3:65375043-65375062 | Msa0656170:CDS | 20.0% |
| !!! | ATATAACATTAGGTAACTTT+TGG | - | chr4_3:65375201-65375220 | None:intergenic | 20.0% |
| !! | TAAATCCAGATTATAGAAAT+TGG | + | chr4_3:65375266-65375285 | Msa0656170:CDS | 20.0% |
| !! | GTTTGATTTCATGAATAAGA+TGG | - | chr4_3:65374109-65374128 | None:intergenic | 25.0% |
| ! | AAAACTAGAGAAATGAAAGA+TGG | - | chr4_3:65374215-65374234 | None:intergenic | 25.0% |
| ! | GTACATAAAAAGTCTACTTT+AGG | - | chr4_3:65374446-65374465 | None:intergenic | 25.0% |
| !!! | TGAGGAATGTTACTTATTTT+TGG | + | chr4_3:65374480-65374499 | Msa0656170:intron | 25.0% |
| !!! | TTACTTATTTTTGGTCATGA+GGG | + | chr4_3:65374489-65374508 | Msa0656170:intron | 25.0% |
| ! | ACATGAATGCATATAACATT+AGG | - | chr4_3:65375211-65375230 | None:intergenic | 25.0% |
| ! | ATCATCCAATTTCTATAATC+TGG | - | chr4_3:65375274-65375293 | None:intergenic | 25.0% |
| ! | ATCATACTTCATCATGTTAA+TGG | - | chr4_3:65375317-65375336 | None:intergenic | 25.0% |
| ! | ATCTGAACATTATAATCACA+AGG | - | chr4_3:65375385-65375404 | None:intergenic | 25.0% |
| ! | TGATTATAATGTTCAGATGT+TGG | + | chr4_3:65375387-65375406 | Msa0656170:CDS | 25.0% |
| !! | GTTTGATTTCATGAATAAGA+TGG | - | chr4_3:65374109-65374128 | None:intergenic | 25.0% |
| ! | AAAACTAGAGAAATGAAAGA+TGG | - | chr4_3:65374215-65374234 | None:intergenic | 25.0% |
| ! | GTACATAAAAAGTCTACTTT+AGG | - | chr4_3:65374446-65374465 | None:intergenic | 25.0% |
| !!! | TGAGGAATGTTACTTATTTT+TGG | + | chr4_3:65374480-65374499 | Msa0656170:intron | 25.0% |
| !!! | TTACTTATTTTTGGTCATGA+GGG | + | chr4_3:65374489-65374508 | Msa0656170:intron | 25.0% |
| ! | ACATGAATGCATATAACATT+AGG | - | chr4_3:65375211-65375230 | None:intergenic | 25.0% |
| ! | ATCATCCAATTTCTATAATC+TGG | - | chr4_3:65375274-65375293 | None:intergenic | 25.0% |
| ! | ATCATACTTCATCATGTTAA+TGG | - | chr4_3:65375317-65375336 | None:intergenic | 25.0% |
| ! | ATCTGAACATTATAATCACA+AGG | - | chr4_3:65375385-65375404 | None:intergenic | 25.0% |
| ! | TGATTATAATGTTCAGATGT+TGG | + | chr4_3:65375387-65375406 | Msa0656170:CDS | 25.0% |
| !! | AGATTTTAGCAACAAGGATT+TGG | + | chr4_3:65374040-65374059 | Msa0656170:CDS | 30.0% |
| TGGTCAATAATTACTACAGT+TGG | - | chr4_3:65374089-65374108 | None:intergenic | 30.0% | |
| ! | TGTACTGATACTAGATCATA+TGG | + | chr4_3:65374307-65374326 | Msa0656170:intron | 30.0% |
| TGATACTAGATCATATGGTT+TGG | + | chr4_3:65374312-65374331 | Msa0656170:intron | 30.0% | |
| ! | AAAACGGTCTTATGATGAAA+AGG | + | chr4_3:65374344-65374363 | Msa0656170:CDS | 30.0% |
| TAAATGTGAAGTAGTAGTGA+GGG | - | chr4_3:65374401-65374420 | None:intergenic | 30.0% | |
| ATAAATGTGAAGTAGTAGTG+AGG | - | chr4_3:65374402-65374421 | None:intergenic | 30.0% | |
| !! | TACTTTAGGACTAAACAAGA+AGG | - | chr4_3:65374432-65374451 | None:intergenic | 30.0% |
| ATAAGTAACATTCCTCATCA+CGG | - | chr4_3:65374477-65374496 | None:intergenic | 30.0% | |
| !!! | GTTACTTATTTTTGGTCATG+AGG | + | chr4_3:65374488-65374507 | Msa0656170:intron | 30.0% |
| ATAGCCCTTAACATCTTAAT+AGG | + | chr4_3:65374670-65374689 | Msa0656170:intron | 30.0% | |
| AAAATGTCCATAAAGAGATG+TGG | - | chr4_3:65374708-65374727 | None:intergenic | 30.0% | |
| ! | TCTAAAACTGACACATTAAC+TGG | + | chr4_3:65374848-65374867 | Msa0656170:intron | 30.0% |
| ATTTGTGACTATTGAGTTCA+TGG | - | chr4_3:65375080-65375099 | None:intergenic | 30.0% | |
| TTGCATAGCACAAATCATTA+AGG | - | chr4_3:65375111-65375130 | None:intergenic | 30.0% | |
| ATGCAATCCTTGCAATATTT+AGG | + | chr4_3:65375125-65375144 | Msa0656170:CDS | 30.0% | |
| ! | TCACGTTTTTCACAAATAGA+AGG | + | chr4_3:65375148-65375167 | Msa0656170:CDS | 30.0% |
| CAAATAGAAGGCAAAAATTC+AGG | + | chr4_3:65375160-65375179 | Msa0656170:CDS | 30.0% | |
| ATGTTATATGCATTCATGTG+TGG | + | chr4_3:65375212-65375231 | Msa0656170:CDS | 30.0% | |
| !!! | GAAGTATGATATTTTTCGAG+TGG | + | chr4_3:65375327-65375346 | Msa0656170:CDS | 30.0% |
| !! | AGATTTTAGCAACAAGGATT+TGG | + | chr4_3:65374040-65374059 | Msa0656170:CDS | 30.0% |
| TGGTCAATAATTACTACAGT+TGG | - | chr4_3:65374089-65374108 | None:intergenic | 30.0% | |
| ! | TGTACTGATACTAGATCATA+TGG | + | chr4_3:65374307-65374326 | Msa0656170:intron | 30.0% |
| TGATACTAGATCATATGGTT+TGG | + | chr4_3:65374312-65374331 | Msa0656170:intron | 30.0% | |
| ! | AAAACGGTCTTATGATGAAA+AGG | + | chr4_3:65374344-65374363 | Msa0656170:CDS | 30.0% |
| TAAATGTGAAGTAGTAGTGA+GGG | - | chr4_3:65374401-65374420 | None:intergenic | 30.0% | |
| ATAAATGTGAAGTAGTAGTG+AGG | - | chr4_3:65374402-65374421 | None:intergenic | 30.0% | |
| !! | TACTTTAGGACTAAACAAGA+AGG | - | chr4_3:65374432-65374451 | None:intergenic | 30.0% |
| ATAAGTAACATTCCTCATCA+CGG | - | chr4_3:65374477-65374496 | None:intergenic | 30.0% | |
| !!! | GTTACTTATTTTTGGTCATG+AGG | + | chr4_3:65374488-65374507 | Msa0656170:intron | 30.0% |
| ATAGCCCTTAACATCTTAAT+AGG | + | chr4_3:65374670-65374689 | Msa0656170:intron | 30.0% | |
| AAAATGTCCATAAAGAGATG+TGG | - | chr4_3:65374708-65374727 | None:intergenic | 30.0% | |
| ! | TCTAAAACTGACACATTAAC+TGG | + | chr4_3:65374848-65374867 | Msa0656170:intron | 30.0% |
| ATTTGTGACTATTGAGTTCA+TGG | - | chr4_3:65375080-65375099 | None:intergenic | 30.0% | |
| TTGCATAGCACAAATCATTA+AGG | - | chr4_3:65375111-65375130 | None:intergenic | 30.0% | |
| ATGCAATCCTTGCAATATTT+AGG | + | chr4_3:65375125-65375144 | Msa0656170:CDS | 30.0% | |
| ! | TCACGTTTTTCACAAATAGA+AGG | + | chr4_3:65375148-65375167 | Msa0656170:CDS | 30.0% |
| CAAATAGAAGGCAAAAATTC+AGG | + | chr4_3:65375160-65375179 | Msa0656170:CDS | 30.0% | |
| ATGTTATATGCATTCATGTG+TGG | + | chr4_3:65375212-65375231 | Msa0656170:CDS | 30.0% | |
| !!! | GAAGTATGATATTTTTCGAG+TGG | + | chr4_3:65375327-65375346 | Msa0656170:CDS | 30.0% |
| !! | CTGCATAGATTTTAGCAACA+AGG | + | chr4_3:65374034-65374053 | Msa0656170:CDS | 35.0% |
| !! | TCTATACTCAAGAGTATCCA+TGG | + | chr4_3:65374170-65374189 | Msa0656170:CDS | 35.0% |
| !! | CAAGAGTATCCATGGAAATA+TGG | + | chr4_3:65374178-65374197 | Msa0656170:CDS | 35.0% |
| AAATGTGAAGTAGTAGTGAG+GGG | - | chr4_3:65374400-65374419 | None:intergenic | 35.0% | |
| CTCTCTTCAATTTAGTGTTC+TGG | + | chr4_3:65374558-65374577 | Msa0656170:intron | 35.0% | |
| CCCTCCTATTAAGATGTTAA+GGG | - | chr4_3:65374677-65374696 | None:intergenic | 35.0% | |
| CCCTTAACATCTTAATAGGA+GGG | + | chr4_3:65374674-65374693 | Msa0656170:intron | 35.0% | |
| TCCCTCCTATTAAGATGTTA+AGG | - | chr4_3:65374678-65374697 | None:intergenic | 35.0% | |
| CTTTGATCCACATCTCTTTA+TGG | + | chr4_3:65374698-65374717 | Msa0656170:intron | 35.0% | |
| CTTGGCATGACTTTATACAT+GGG | - | chr4_3:65374731-65374750 | None:intergenic | 35.0% | |
| GGAAAGTAGAAATGCAAAAC+AGG | - | chr4_3:65374813-65374832 | None:intergenic | 35.0% | |
| GCTAATGCATGTAACAAGAA+TGG | + | chr4_3:65374961-65374980 | Msa0656170:CDS | 35.0% | |
| TATTTCCTCAATGCATATGC+TGG | + | chr4_3:65375001-65375020 | Msa0656170:CDS | 35.0% | |
| AACGTGACCTAAATATTGCA+AGG | - | chr4_3:65375135-65375154 | None:intergenic | 35.0% | |
| AATTCAGGACTTTGCTTGAA+AGG | + | chr4_3:65375175-65375194 | Msa0656170:CDS | 35.0% | |
| !!! | CACTACAGTTTTGTTACTCA+TGG | + | chr4_3:65375239-65375258 | Msa0656170:CDS | 35.0% |
| GGATGATTCCTTATCTTGAA+CGG | + | chr4_3:65375287-65375306 | Msa0656170:CDS | 35.0% | |
| ! | TTTCGAGTGGTATATGTTAG+TGG | + | chr4_3:65375340-65375359 | Msa0656170:CDS | 35.0% |
| AATGAAGAAGAGAGTAGACA+TGG | + | chr4_3:65375412-65375431 | Msa0656170:CDS | 35.0% | |
| !! | CTGCATAGATTTTAGCAACA+AGG | + | chr4_3:65374034-65374053 | Msa0656170:CDS | 35.0% |
| !! | TCTATACTCAAGAGTATCCA+TGG | + | chr4_3:65374170-65374189 | Msa0656170:CDS | 35.0% |
| !! | CAAGAGTATCCATGGAAATA+TGG | + | chr4_3:65374178-65374197 | Msa0656170:CDS | 35.0% |
| AAATGTGAAGTAGTAGTGAG+GGG | - | chr4_3:65374400-65374419 | None:intergenic | 35.0% | |
| CTCTCTTCAATTTAGTGTTC+TGG | + | chr4_3:65374558-65374577 | Msa0656170:intron | 35.0% | |
| CCCTCCTATTAAGATGTTAA+GGG | - | chr4_3:65374677-65374696 | None:intergenic | 35.0% | |
| CCCTTAACATCTTAATAGGA+GGG | + | chr4_3:65374674-65374693 | Msa0656170:intron | 35.0% | |
| TCCCTCCTATTAAGATGTTA+AGG | - | chr4_3:65374678-65374697 | None:intergenic | 35.0% | |
| CTTTGATCCACATCTCTTTA+TGG | + | chr4_3:65374698-65374717 | Msa0656170:intron | 35.0% | |
| CTTGGCATGACTTTATACAT+GGG | - | chr4_3:65374731-65374750 | None:intergenic | 35.0% | |
| GGAAAGTAGAAATGCAAAAC+AGG | - | chr4_3:65374813-65374832 | None:intergenic | 35.0% | |
| GCTAATGCATGTAACAAGAA+TGG | + | chr4_3:65374961-65374980 | Msa0656170:CDS | 35.0% | |
| TATTTCCTCAATGCATATGC+TGG | + | chr4_3:65375001-65375020 | Msa0656170:CDS | 35.0% | |
| AACGTGACCTAAATATTGCA+AGG | - | chr4_3:65375135-65375154 | None:intergenic | 35.0% | |
| AATTCAGGACTTTGCTTGAA+AGG | + | chr4_3:65375175-65375194 | Msa0656170:CDS | 35.0% | |
| !!! | CACTACAGTTTTGTTACTCA+TGG | + | chr4_3:65375239-65375258 | Msa0656170:CDS | 35.0% |
| GGATGATTCCTTATCTTGAA+CGG | + | chr4_3:65375287-65375306 | Msa0656170:CDS | 35.0% | |
| ! | TTTCGAGTGGTATATGTTAG+TGG | + | chr4_3:65375340-65375359 | Msa0656170:CDS | 35.0% |
| AATGAAGAAGAGAGTAGACA+TGG | + | chr4_3:65375412-65375431 | Msa0656170:CDS | 35.0% | |
| ! | AGATCATATGGTTTGGAGCA+TGG | + | chr4_3:65374319-65374338 | Msa0656170:intron | 40.0% |
| GCCCTTAACATCTTAATAGG+AGG | + | chr4_3:65374673-65374692 | Msa0656170:intron | 40.0% | |
| CCTTGGCATGACTTTATACA+TGG | - | chr4_3:65374732-65374751 | None:intergenic | 40.0% | |
| CCATGTATAAAGTCATGCCA+AGG | + | chr4_3:65374729-65374748 | Msa0656170:intron | 40.0% | |
| !! | TTAGCATTGATAGCTGCAAG+AGG | - | chr4_3:65374946-65374965 | None:intergenic | 40.0% |
| TGTAACAAGAATGGCTGTCT+TGG | + | chr4_3:65374970-65374989 | Msa0656170:CDS | 40.0% | |
| ATTCTCCAGCATATGCATTG+AGG | - | chr4_3:65375009-65375028 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr4_3:65375016-65375035 | Msa0656170:CDS | 40.0% | |
| ATGGAGAACCGTTCAAGATA+AGG | - | chr4_3:65375298-65375317 | None:intergenic | 40.0% | |
| ! | AGATCATATGGTTTGGAGCA+TGG | + | chr4_3:65374319-65374338 | Msa0656170:intron | 40.0% |
| GCCCTTAACATCTTAATAGG+AGG | + | chr4_3:65374673-65374692 | Msa0656170:intron | 40.0% | |
| CCTTGGCATGACTTTATACA+TGG | - | chr4_3:65374732-65374751 | None:intergenic | 40.0% | |
| CCATGTATAAAGTCATGCCA+AGG | + | chr4_3:65374729-65374748 | Msa0656170:intron | 40.0% | |
| !! | TTAGCATTGATAGCTGCAAG+AGG | - | chr4_3:65374946-65374965 | None:intergenic | 40.0% |
| TGTAACAAGAATGGCTGTCT+TGG | + | chr4_3:65374970-65374989 | Msa0656170:CDS | 40.0% | |
| ATTCTCCAGCATATGCATTG+AGG | - | chr4_3:65375009-65375028 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr4_3:65375016-65375035 | Msa0656170:CDS | 40.0% | |
| ATGGAGAACCGTTCAAGATA+AGG | - | chr4_3:65375298-65375317 | None:intergenic | 40.0% | |
| ! | GGTTTGGAGCATGGCAAAAA+CGG | + | chr4_3:65374328-65374347 | Msa0656170:CDS | 45.0% |
| AGTGAGGGGTCATACTTACA+AGG | - | chr4_3:65374386-65374405 | None:intergenic | 45.0% | |
| GTACTTCTACAACCGTGATG+AGG | + | chr4_3:65374462-65374481 | Msa0656170:intron | 45.0% | |
| ! | GGTTTGGAGCATGGCAAAAA+CGG | + | chr4_3:65374328-65374347 | Msa0656170:CDS | 45.0% |
| AGTGAGGGGTCATACTTACA+AGG | - | chr4_3:65374386-65374405 | None:intergenic | 45.0% | |
| GTACTTCTACAACCGTGATG+AGG | + | chr4_3:65374462-65374481 | Msa0656170:intron | 45.0% | |
| TCCTCACGTGCTGAGAATCT+TGG | + | chr4_3:65374134-65374153 | Msa0656170:CDS | 50.0% | |
| ACCAAGATTCTCAGCACGTG+AGG | - | chr4_3:65374138-65374157 | None:intergenic | 50.0% | |
| TCCTCACGTGCTGAGAATCT+TGG | + | chr4_3:65374134-65374153 | Msa0656170:CDS | 50.0% | |
| ACCAAGATTCTCAGCACGTG+AGG | - | chr4_3:65374138-65374157 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65374023 | 65375453 | 65374023 | ID=Msa0656170;Name=Msa0656170 |
| chr4_3 | mRNA | 65374023 | 65375453 | 65374023 | ID=Msa0656170-mRNA-1;Parent=Msa0656170;Name=Msa0656170-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|247 |
| chr4_3 | exon | 65374023 | 65374199 | 65374023 | ID=Msa0656170-mRNA-1:exon:18512;Parent=Msa0656170-mRNA-1 |
| chr4_3 | exon | 65374321 | 65374386 | 65374321 | ID=Msa0656170-mRNA-1:exon:18513;Parent=Msa0656170-mRNA-1 |
| chr4_3 | exon | 65374953 | 65375453 | 65374953 | ID=Msa0656170-mRNA-1:exon:18514;Parent=Msa0656170-mRNA-1 |
| chr4_3 | CDS | 65374023 | 65374199 | 65374023 | ID=Msa0656170-mRNA-1:cds;Parent=Msa0656170-mRNA-1 |
| chr4_3 | CDS | 65374321 | 65374386 | 65374321 | ID=Msa0656170-mRNA-1:cds;Parent=Msa0656170-mRNA-1 |
| chr4_3 | CDS | 65374953 | 65375453 | 65374953 | ID=Msa0656170-mRNA-1:cds;Parent=Msa0656170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
